Query psy14675
Match_columns 105
No_of_seqs 132 out of 1016
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:44:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hxa_A Pterin-4-alpha-carbinol 100.0 3.9E-40 1.3E-44 217.6 11.7 100 4-103 3-102 (104)
2 3jst_A Putative pterin-4-alpha 100.0 6.6E-40 2.3E-44 214.0 12.1 96 5-102 2-97 (97)
3 1ru0_A DCOH-like protein dcohm 100.0 7.2E-40 2.4E-44 216.6 10.7 101 3-103 4-104 (105)
4 2v6u_A Pterin-4A-carbinolamine 100.0 5.8E-39 2E-43 211.9 12.0 100 2-103 2-101 (104)
5 2ebb_A Pterin-4-alpha-carbinol 100.0 2E-38 6.7E-43 208.5 13.6 94 7-103 1-94 (101)
6 1usm_A DCOH, hepatocyte nuclea 100.0 1.4E-35 4.9E-40 187.4 10.6 79 24-102 1-79 (80)
7 4hti_A Receptor-type tyrosine- 86.2 2.6 9E-05 26.8 6.0 54 40-94 19-73 (99)
8 2qt7_A Receptor-type tyrosine- 76.3 12 0.0004 23.4 6.7 54 41-95 13-67 (91)
9 3zxw_B Ribulose bisphosphate c 74.7 0.55 1.9E-05 30.9 -0.3 62 6-67 16-87 (118)
10 4f0h_B Ribulose bisphosphate c 74.4 0.78 2.7E-05 31.0 0.4 63 5-67 10-82 (138)
11 1svd_M Ribulose bisphosphate c 74.1 0.81 2.8E-05 29.7 0.4 62 6-67 19-90 (110)
12 1z9b_A Translation initiation 73.9 0.91 3.1E-05 30.4 0.7 28 72-99 67-94 (135)
13 1bwv_S Rubisco, protein (ribul 70.9 1.1 3.6E-05 30.3 0.4 62 6-67 11-82 (138)
14 1wdd_S Ribulose bisphosphate c 70.7 1 3.6E-05 30.0 0.4 24 6-29 18-41 (128)
15 1rbl_M Ribulose 1,5 bisphospha 70.7 0.75 2.6E-05 29.8 -0.3 62 6-67 17-88 (109)
16 1gk8_I Ribulose bisphosphate c 68.3 1.3 4.3E-05 30.0 0.4 24 6-29 18-41 (140)
17 1bxn_I Rubisco, protein (ribul 67.2 0.99 3.4E-05 30.5 -0.3 62 6-67 11-82 (139)
18 1uw4_A UPF3X; nonsense mediate 58.1 17 0.00058 22.3 4.3 49 6-54 10-65 (91)
19 3lqv_P Splicing factor 3B subu 48.8 12 0.00041 19.8 2.0 19 6-28 20-38 (39)
20 2l08_A Regulator of nonsense t 48.2 7.3 0.00025 24.5 1.4 50 5-54 17-73 (97)
21 3nqj_A Histone H3-like centrom 36.2 18 0.0006 22.0 1.7 14 85-98 62-75 (82)
22 2hue_B Histone H3; mini beta s 32.6 19 0.00066 21.6 1.4 13 86-98 61-73 (77)
23 2jya_A AGR_C_3324P, uncharacte 31.2 56 0.0019 20.7 3.6 30 24-54 42-71 (106)
24 1qys_A TOP7; alpha-beta, novel 28.8 45 0.0015 20.4 2.7 67 10-78 25-92 (106)
25 3jtn_A YPBH, adapter protein M 26.6 60 0.0021 19.4 3.0 20 38-57 4-23 (91)
26 3bbn_E Ribosomal protein S5; s 26.4 14 0.00048 27.9 0.0 25 6-30 96-120 (308)
27 3izy_P Translation initiation 26.3 10 0.00036 30.3 -0.7 28 72-99 366-393 (537)
28 2fho_A Spliceosomal protein SF 25.7 29 0.00099 19.0 1.2 20 7-30 20-39 (47)
29 2ee7_A Sperm flagellar protein 25.3 40 0.0014 21.9 2.1 18 2-19 5-22 (127)
30 2yfv_A Histone H3-like centrom 24.7 24 0.00083 22.2 0.9 12 86-97 88-99 (100)
31 2b3y_A Iron-responsive element 23.3 1.7E+02 0.0058 25.1 6.0 40 56-95 224-263 (888)
32 3jtp_A Adapter protein MECA 1; 22.2 77 0.0026 19.2 2.9 19 34-52 6-24 (98)
33 2kie_A Inositol polyphosphate 22.0 1.7E+02 0.0057 18.9 4.6 27 34-60 96-122 (124)
34 2kjs_A Putative acyl carrier p 21.9 51 0.0017 19.5 2.0 26 39-64 60-86 (87)
35 3btp_B Protein VIRE1; TIM barr 21.7 55 0.0019 18.6 1.9 19 80-98 31-49 (63)
36 2ahq_A Sigma-54, RNA polymeras 21.6 62 0.0021 19.2 2.3 17 4-20 33-49 (76)
37 3r45_A Histone H3-like centrom 21.5 38 0.0013 23.1 1.4 15 86-100 137-151 (156)
38 1whz_A Hypothetical protein; a 21.1 65 0.0022 18.0 2.3 21 6-29 2-22 (70)
39 3nqu_A Histone H3-like centrom 20.8 40 0.0014 22.5 1.4 14 86-99 121-134 (140)
No 1
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=100.00 E-value=3.9e-40 Score=217.56 Aligned_cols=100 Identities=57% Similarity=1.009 Sum_probs=93.6
Q ss_pred cCCCCCCHHHHHhhhcCCCCCCCEEecCCccEEEEEEeCChHHHHHHHHHHHHHHHhcCCCceeEeecCEEEEEEEcCCC
Q psy14675 4 SASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDC 83 (105)
Q Consensus 4 ~~~~~Lt~~ei~~~L~~l~~~gW~~~~~~~~L~r~f~f~~f~~a~~fv~~Va~~ae~~~HHP~i~~~~~~V~v~l~Th~~ 83 (105)
+++++||++||+++|.+|+.|||++..++.+|+|+|+|+||.+|+.|||+|+.+||+++|||+|+++|++|+|+|+||++
T Consensus 3 ~~~~~Ls~~ei~~~L~~L~~~gW~~~~~~~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~~y~~V~v~l~THd~ 82 (104)
T 3hxa_A 3 GKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFNVYNKVHITLSTHEC 82 (104)
T ss_dssp --CCCCCHHHHHHHSHHHHTTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEEEEEECBTTT
T ss_pred CCCccCCHHHHHHHHhhCCCCCCEEecCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeCCEEEEEEEeCCC
Confidence 46889999999999999855799998766799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q psy14675 84 NGLSNKDIKLASFMDTIIKA 103 (105)
Q Consensus 84 ~glT~~D~~LA~~id~~~~~ 103 (105)
||||++||+||++||+++..
T Consensus 83 gGlT~~D~~lA~~id~la~~ 102 (104)
T 3hxa_A 83 AGLSERDINLASFIEQVAVS 102 (104)
T ss_dssp TBCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 2
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=100.00 E-value=6.6e-40 Score=214.02 Aligned_cols=96 Identities=49% Similarity=0.876 Sum_probs=92.1
Q ss_pred CCCCCCHHHHHhhhcCCCCCCCEEecCCccEEEEEEeCChHHHHHHHHHHHHHHHhcCCCceeEeecCEEEEEEEcCCCC
Q psy14675 5 ASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCN 84 (105)
Q Consensus 5 ~~~~Lt~~ei~~~L~~l~~~gW~~~~~~~~L~r~f~f~~f~~a~~fv~~Va~~ae~~~HHP~i~~~~~~V~v~l~Th~~~ 84 (105)
++++||++||+++|.+| |||++.+++.+|+|+|+|+||.+|+.|||+|+.+||+++|||+|+++|++|+|+|+||++|
T Consensus 2 ~~~~Ls~~ei~~~L~~l--~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~~~y~~V~v~l~THd~g 79 (97)
T 3jst_A 2 ARNRLTESEMNEALRAL--DGWQKVDGREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWFNAYNRVDVTLATHSEN 79 (97)
T ss_dssp CCSCCCHHHHHHHHHTS--TTCEECTTSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEEEEEECBGGGT
T ss_pred CCCCCCHHHHHHHhhcC--CCCeEeCCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeCCEEEEEEEeCCCC
Confidence 56799999999999999 9999997777999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy14675 85 GLSNKDIKLASFMDTIIK 102 (105)
Q Consensus 85 glT~~D~~LA~~id~~~~ 102 (105)
|||++||+||++||+++.
T Consensus 80 GlT~~D~~lA~~id~la~ 97 (97)
T 3jst_A 80 GVTELDIKMARKMNAIAG 97 (97)
T ss_dssp BCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999999863
No 3
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=100.00 E-value=7.2e-40 Score=216.59 Aligned_cols=101 Identities=55% Similarity=0.994 Sum_probs=93.7
Q ss_pred CcCCCCCCHHHHHhhhcCCCCCCCEEecCCccEEEEEEeCChHHHHHHHHHHHHHHHhcCCCceeEeecCEEEEEEEcCC
Q psy14675 3 ASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHD 82 (105)
Q Consensus 3 ~~~~~~Lt~~ei~~~L~~l~~~gW~~~~~~~~L~r~f~f~~f~~a~~fv~~Va~~ae~~~HHP~i~~~~~~V~v~l~Th~ 82 (105)
++++++||++||+++|.+|+.|||++.+++.+|+|+|+|+||.+|+.||++|+.+||+++|||+|+++|++|+|+|+||+
T Consensus 4 ~~~~~~Ls~~ei~~~L~~l~~~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~~V~v~l~THd 83 (105)
T 1ru0_A 4 SSDAQWLTAEERDQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSHD 83 (105)
T ss_dssp --CCSBCCHHHHHHHHHHHHHTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEEEEEECBTT
T ss_pred CCCCCCCCHHHHHHHHHhCCCCCCeEECCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCCEEEEEEEeCC
Confidence 36788999999999999985469999877678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy14675 83 CNGLSNKDIKLASFMDTIIKA 103 (105)
Q Consensus 83 ~~glT~~D~~LA~~id~~~~~ 103 (105)
+||||++||+||++||+++.+
T Consensus 84 ~gGlt~~D~~lA~~id~l~~~ 104 (105)
T 1ru0_A 84 CGGLTKRDVKLAQFIEKAAAS 104 (105)
T ss_dssp TTBCBHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999864
No 4
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=100.00 E-value=5.8e-39 Score=211.90 Aligned_cols=100 Identities=44% Similarity=0.801 Sum_probs=94.2
Q ss_pred CCcCCCCCCHHHHHhhhcCCCCCCCEEecCCccEEEEEEeCChHHHHHHHHHHHHHHHhcCCCceeEeecCEEEEEEEcC
Q psy14675 2 SASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTH 81 (105)
Q Consensus 2 ~~~~~~~Lt~~ei~~~L~~l~~~gW~~~~~~~~L~r~f~f~~f~~a~~fv~~Va~~ae~~~HHP~i~~~~~~V~v~l~Th 81 (105)
.--++++||++||+++|.+| |||++.+++.+|+|+|+|+||.+|+.||++||.+||++||||+|+++|++|+|+|+||
T Consensus 2 ~~~~~~~Ls~~ei~~~L~~l--~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~~V~v~l~TH 79 (104)
T 2v6u_A 2 APLARLAANSARLLQLHKTV--PQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYNVYNTVDVELSTH 79 (104)
T ss_dssp CSSCCCCTTCHHHHHHHTTS--TTSEECGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEEEEEECBG
T ss_pred CCccCCCCCHHHHHHHhhcC--CCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCCEEEEEEEeC
Confidence 33456799999999999999 8999987766899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhh
Q psy14675 82 DCNGLSNKDIKLASFMDTIIKA 103 (105)
Q Consensus 82 ~~~glT~~D~~LA~~id~~~~~ 103 (105)
++||||++||+||++||+++.+
T Consensus 80 d~gGlT~~D~~lA~~id~l~~~ 101 (104)
T 2v6u_A 80 DAAGLTEKDFALAKFMDDAAKN 101 (104)
T ss_dssp GGTBCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865
No 5
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=100.00 E-value=2e-38 Score=208.46 Aligned_cols=94 Identities=32% Similarity=0.558 Sum_probs=90.1
Q ss_pred CCCCHHHHHhhhcCCCCCCCEEecCCccEEEEEEeCChHHHHHHHHHHHHHHHhcCCCceeEeecCEEEEEEEcCCCCCC
Q psy14675 7 VKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCNGL 86 (105)
Q Consensus 7 ~~Lt~~ei~~~L~~l~~~gW~~~~~~~~L~r~f~f~~f~~a~~fv~~Va~~ae~~~HHP~i~~~~~~V~v~l~Th~~~gl 86 (105)
.|||++||.++|.+| |||++.+++ .|+|+|+|+||.+|+.||++||.+||+++|||+|+++|++|+|+|+||++|||
T Consensus 1 ~~Ls~~ei~~~L~~l--~gW~~~~~~-~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGl 77 (101)
T 2ebb_A 1 MRLTEEEVQALLEKA--DGWKLADER-WIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISIDYKLITVKLSSWRAKGL 77 (101)
T ss_dssp CCCCHHHHHHHHHTS--TTCEEETTT-EEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEEECBTTTTBC
T ss_pred CCCCHHHHHHHhhcC--CCCeECCCC-CEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCCEEEEEEEeCCCCCC
Confidence 479999999999999 899999875 69999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy14675 87 SNKDIKLASFMDTIIKA 103 (105)
Q Consensus 87 T~~D~~LA~~id~~~~~ 103 (105)
|++||+||++||+++.+
T Consensus 78 t~~D~~lA~~id~l~~~ 94 (101)
T 2ebb_A 78 TKLDFDLAKQYDEVYNQ 94 (101)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999864
No 6
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=100.00 E-value=1.4e-35 Score=187.42 Aligned_cols=79 Identities=33% Similarity=0.598 Sum_probs=73.8
Q ss_pred CCCEEecCCccEEEEEEeCChHHHHHHHHHHHHHHHhcCCCceeEeecCEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q psy14675 24 SGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIK 102 (105)
Q Consensus 24 ~gW~~~~~~~~L~r~f~f~~f~~a~~fv~~Va~~ae~~~HHP~i~~~~~~V~v~l~Th~~~glT~~D~~LA~~id~~~~ 102 (105)
|||++.+++.+|+|+|+|+||.+|++||++||.+||+++|||+|+++|++|+|+|+||++||||++||+||++||+++.
T Consensus 1 ~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlt~~D~~lA~~id~l~~ 79 (80)
T 1usm_A 1 MDWEERENLKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMARLTDALLQ 79 (80)
T ss_dssp CCCEEC---CCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEEEEEECBTTTTBCCHHHHHHHHHHHHTTC
T ss_pred CCCeEeCCccEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHhh
Confidence 6999988767899999999999999999999999999999999999999999999999999999999999999999874
No 7
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=86.25 E-value=2.6 Score=26.79 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=41.6
Q ss_pred EeCChHHHHHHHHHHHHHHHhc-CCCceeEeecCEEEEEEEcCCCCCCCHHHHHHH
Q psy14675 40 LFKNFNEAFGFMTRTALLAEKM-DHHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLA 94 (105)
Q Consensus 40 ~f~~f~~a~~fv~~Va~~ae~~-~HHP~i~~~~~~V~v~l~Th~~~glT~~D~~LA 94 (105)
.|.++.++..+|..++++-.-. +-.-+|......|++++..-+ .++|.-|+.=+
T Consensus 19 ~~l~~~~G~~l~~~la~~l~l~~~~F~~isV~g~aVTFrV~~N~-~n~taadVA~~ 73 (99)
T 4hti_A 19 DPLRPEEGRRLVEDVARLLQVPSSAFADVEVLGPAVTFKVSANV-QNVTTEDVEKA 73 (99)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEEEECCCT-TCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCchhheeeeeecCceEEEEeccCC-CCCCHHHHHHH
Confidence 5688999999999888775433 444567788999999996554 58999998533
No 8
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=76.25 E-value=12 Score=23.42 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=44.6
Q ss_pred eCChHHHHHHHHHHHHHHHhc-CCCceeEeecCEEEEEEEcCCCCCCCHHHHHHHH
Q psy14675 41 FKNFNEAFGFMTRTALLAEKM-DHHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLAS 95 (105)
Q Consensus 41 f~~f~~a~~fv~~Va~~ae~~-~HHP~i~~~~~~V~v~l~Th~~~glT~~D~~LA~ 95 (105)
+.++.++..+|..||++-.-. +-.-++.....-|++++ .+...++|.-|+.=++
T Consensus 13 ~ls~~eG~~l~~~la~ll~l~~~~Ft~i~V~g~aVTFrV-~~N~~n~taadVa~~a 67 (91)
T 2qt7_A 13 PLSLAAGVKLLEILAEHVHMSSGSFINISVVGPALTFRI-RHNEQNLSLADVTQQA 67 (91)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCGGGEEEEEEETTEEEEEE-CCCTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCccceeeeEeecceEEEEe-ccCcccCCHHHHHHHH
Confidence 347899999999999988763 66678888999999999 7777899999985443
No 9
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=74.67 E-value=0.55 Score=30.91 Aligned_cols=62 Identities=8% Similarity=0.053 Sum_probs=38.6
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEec----CC---ccEEEEEEeCCh--HHHHHHHHHHHHHHH-hcCCCcee
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLVE----NR---DAIYKEYLFKNF--NEAFGFMTRTALLAE-KMDHHPEW 67 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~~----~~---~~L~r~f~f~~f--~~a~~fv~~Va~~ae-~~~HHP~i 67 (105)
.++||++||.+.+..|+..||..-- .+ ..-...|+.+-| .++.+.+..|.+.-. --+||-.|
T Consensus 16 LP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p~~yVRl 87 (118)
T 3zxw_B 16 LPPLSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYPNCFIRV 87 (118)
T ss_dssp SCCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 5799999999988888778998741 11 233344455555 344556666655533 34555544
No 10
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=74.40 E-value=0.78 Score=30.96 Aligned_cols=63 Identities=5% Similarity=0.082 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHhhhcCCCCCCCEEe----cCC---ccEEEEEEeCCh--HHHHHHHHHHHHHHH-hcCCCcee
Q psy14675 5 ASVKLSADERLSKLEPILKSGWKLV----ENR---DAIYKEYLFKNF--NEAFGFMTRTALLAE-KMDHHPEW 67 (105)
Q Consensus 5 ~~~~Lt~~ei~~~L~~l~~~gW~~~----~~~---~~L~r~f~f~~f--~~a~~fv~~Va~~ae-~~~HHP~i 67 (105)
-.++||++||.+.+..++..||.+. +++ ..-..-|+.+-| .++.+.+..|.+.-. --|||-.+
T Consensus 10 yLP~ltd~qI~kQI~YlL~qGw~~~iEf~d~~~~r~~yW~mWkLPmFg~~d~~~Vl~Ele~C~k~~p~~YVRl 82 (138)
T 4f0h_B 10 FLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKAKSNFYIKV 82 (138)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEESSCCBCSCCSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCCCCcCCEEeecCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 3579999999999999888999874 111 122223333333 345666666665533 34666554
No 11
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=74.09 E-value=0.81 Score=29.71 Aligned_cols=62 Identities=8% Similarity=0.119 Sum_probs=38.6
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEec----C---CccEEEEEEeCCh--HHHHHHHHHHHHHH-HhcCCCcee
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLVE----N---RDAIYKEYLFKNF--NEAFGFMTRTALLA-EKMDHHPEW 67 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~~----~---~~~L~r~f~f~~f--~~a~~fv~~Va~~a-e~~~HHP~i 67 (105)
.++||++||.+.+..+...||..-- . ...-..-|+.+-| .++.+.+..|.+.- +--++|-.+
T Consensus 19 LP~lt~eqI~kQV~Yll~qGw~p~iEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~El~~C~k~~p~~yVRl 90 (110)
T 1svd_M 19 LPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKL 90 (110)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCeeEEEeccCCccCCcEEeecccCCcCCCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 4699999999999988889998741 1 1233444555555 34556666665553 333555443
No 12
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=73.93 E-value=0.91 Score=30.41 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.8
Q ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q psy14675 72 NKVQVTLSTHDCNGLSNKDIKLASFMDT 99 (105)
Q Consensus 72 ~~V~v~l~Th~~~glT~~D~~LA~~id~ 99 (105)
..|.|.+-...+|++|+.|+.||...+.
T Consensus 67 ~ev~i~Ii~~gVG~ItesDV~lA~as~a 94 (135)
T 1z9b_A 67 EGVRVKIIHAAVGAITESDISLATASNA 94 (135)
T ss_dssp SSCEEEEEEEEESCBCHHHHHHHHHHTC
T ss_pred CceEEEEEeecCCCCCHHHHHHHHHcCC
Confidence 4588888888899999999999987653
No 13
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=70.88 E-value=1.1 Score=30.30 Aligned_cols=62 Identities=5% Similarity=0.091 Sum_probs=38.6
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEe----cCC---ccEEEEEEeCCh--HHHHHHHHHHHHHH-HhcCCCcee
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLV----ENR---DAIYKEYLFKNF--NEAFGFMTRTALLA-EKMDHHPEW 67 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~----~~~---~~L~r~f~f~~f--~~a~~fv~~Va~~a-e~~~HHP~i 67 (105)
.++||++||...+..+...||... +++ ..-..-|+.+-| .++.+.+..|.+.- +--|||-.|
T Consensus 11 LP~ltdeqI~kQI~Yll~qGw~p~iEf~d~~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~k~~p~~YVRl 82 (138)
T 1bwv_S 11 LPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKV 82 (138)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCeeeEEecCCCCCccCEEeccCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 579999999999998888999874 111 122233343334 34566677766654 344666544
No 14
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=70.72 E-value=1 Score=29.95 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEe
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLV 29 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~ 29 (105)
.++||++||.+.+..|...||..-
T Consensus 18 LP~lt~eqI~kQI~Yll~qGw~p~ 41 (128)
T 1wdd_S 18 LPPLTVEDLLKQIEYLLRSKWVPC 41 (128)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCeee
Confidence 479999999999998888999874
No 15
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=70.67 E-value=0.75 Score=29.81 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=37.5
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEe----cCC---ccEEEEEEeCCh--HHHHHHHHHHHHHH-HhcCCCcee
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLV----ENR---DAIYKEYLFKNF--NEAFGFMTRTALLA-EKMDHHPEW 67 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~----~~~---~~L~r~f~f~~f--~~a~~fv~~Va~~a-e~~~HHP~i 67 (105)
.++||++||.+.+..+...||..- +.+ ..-..-|+.+-| .++.+.+..|.+.- +--++|-.+
T Consensus 17 LP~lt~eqI~kQI~Yll~qGw~p~lEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~Ele~C~k~~p~~yVRl 88 (109)
T 1rbl_M 17 LPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRV 88 (109)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEeccCccccccEEeecccCCcCCCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 469999999999988877899864 111 223333444444 24556666665553 333555443
No 16
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=68.26 E-value=1.3 Score=29.99 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.8
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEe
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLV 29 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~ 29 (105)
.++||++||.+.+..|...||..-
T Consensus 18 LP~lt~eqI~kQI~YlL~qGw~p~ 41 (140)
T 1gk8_I 18 LPPLTDEQIAAQVDYIVANGWIPC 41 (140)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEee
Confidence 479999999999998888999864
No 17
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=67.17 E-value=0.99 Score=30.48 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=37.9
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEe----cCC---ccEEEEEEeCCh--HHHHHHHHHHHHHH-HhcCCCcee
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLV----ENR---DAIYKEYLFKNF--NEAFGFMTRTALLA-EKMDHHPEW 67 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~----~~~---~~L~r~f~f~~f--~~a~~fv~~Va~~a-e~~~HHP~i 67 (105)
.++||++||...+..+...||.+. +++ ..-..-|+.+-| .++.+.+..|.+.- +--|||-.|
T Consensus 11 LP~ltdeqI~kQI~YlL~qGw~p~lE~~d~~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~k~~p~~YVRl 82 (139)
T 1bxn_I 11 LPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRV 82 (139)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEeccCCccccCEEeecCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 579999999999998888899874 111 122233344444 34566666666654 333555443
No 18
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=58.07 E-value=17 Score=22.34 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCCCCHHHHHhhhcCCCCCCCE-EecC-----CccEEE-EEEeCChHHHHHHHHHH
Q psy14675 6 SVKLSADERLSKLEPILKSGWK-LVEN-----RDAIYK-EYLFKNFNEAFGFMTRT 54 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~-~~~~-----~~~L~r-~f~f~~f~~a~~fv~~V 54 (105)
++.||++|..+.|..+..-.|. ...| ...-+| -..|++..+..+|.+++
T Consensus 10 PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~ 65 (91)
T 1uw4_A 10 PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF 65 (91)
T ss_dssp CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 5789999999999877332232 2222 123344 45999988888887765
No 19
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=48.78 E-value=12 Score=19.80 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=14.7
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEE
Q psy14675 6 SVKLSADERLSKLEPILKSGWKL 28 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~ 28 (105)
-.|||++|+...|+ +|.++
T Consensus 20 NrpltDEeLD~mLP----~GYkI 38 (39)
T 3lqv_P 20 NRPLSDEELDAMFP----EGYKV 38 (39)
T ss_dssp TCCCCHHHHHHTCC----SSEEE
T ss_pred cCCCCHHHHHHhCC----CCccc
Confidence 35999999999886 36654
No 20
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=48.15 E-value=7.3 Score=24.51 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHhhhcCCCCCCCEE-ecC-----CccEE-EEEEeCChHHHHHHHHHH
Q psy14675 5 ASVKLSADERLSKLEPILKSGWKL-VEN-----RDAIY-KEYLFKNFNEAFGFMTRT 54 (105)
Q Consensus 5 ~~~~Lt~~ei~~~L~~l~~~gW~~-~~~-----~~~L~-r~f~f~~f~~a~~fv~~V 54 (105)
=++.||++|..+.|..+..-.|.. ..+ ...-+ .-..|++..+..+|.+++
T Consensus 17 LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 17 LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 367899999998888763222321 111 12223 355999998888887664
No 21
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=36.20 E-value=18 Score=22.03 Aligned_cols=14 Identities=36% Similarity=0.403 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHH
Q psy14675 85 GLSNKDIKLASFMD 98 (105)
Q Consensus 85 glT~~D~~LA~~id 98 (105)
.|..+|+.||.+|-
T Consensus 62 Ti~~kDiqLa~rir 75 (82)
T 3nqj_A 62 TLFPKDVQLARRIR 75 (82)
T ss_dssp SBCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHc
Confidence 36789999999985
No 22
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=32.62 E-value=19 Score=21.57 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHH
Q psy14675 86 LSNKDIKLASFMD 98 (105)
Q Consensus 86 lT~~D~~LA~~id 98 (105)
|..+|+.||.+|-
T Consensus 61 i~~kDiqLa~rir 73 (77)
T 2hue_B 61 IMPKDIQLARRIR 73 (77)
T ss_dssp ECHHHHHHHHHHT
T ss_pred CcHhhHHHHHHHh
Confidence 4679999999884
No 23
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=31.23 E-value=56 Score=20.73 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCCEEecCCccEEEEEEeCChHHHHHHHHHH
Q psy14675 24 SGWKLVENRDAIYKEYLFKNFNEAFGFMTRT 54 (105)
Q Consensus 24 ~gW~~~~~~~~L~r~f~f~~f~~a~~fv~~V 54 (105)
-||+-.++. .-.-...|++-++|++|..+=
T Consensus 42 MGWtsS~D~-~~qv~L~F~skE~AiayAek~ 71 (106)
T 2jya_A 42 MGYTSSSDM-KQQVKLTFETQEQAEAYAQRK 71 (106)
T ss_dssp TCSCSCCCS-EEEEEEEESSHHHHHHHHHHH
T ss_pred cCcCCCCCc-cccceEecCCHHHHHHHHHHc
Confidence 589887763 223468999999999987663
No 24
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=28.79 E-value=45 Score=20.44 Aligned_cols=67 Identities=13% Similarity=-0.012 Sum_probs=37.4
Q ss_pred CHHHHHhhhcCCCCCCCEEecCCccEEEEEEeCChHHHHHHHHH-HHHHHHhcCCCceeEeecCEEEEEE
Q psy14675 10 SADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTR-TALLAEKMDHHPEWFNVYNKVQVTL 78 (105)
Q Consensus 10 t~~ei~~~L~~l~~~gW~~~~~~~~L~r~f~f~~f~~a~~fv~~-Va~~ae~~~HHP~i~~~~~~V~v~l 78 (105)
++.|++.-|..| -.+-...+..+++-...-.+-.+|-.|..- |-.+||..-.--.+++.+++|+|.=
T Consensus 25 teselqkvlnel--mdyikkqgakrvrisitartkkeaekfaailikvfaelgyndinvtfdgdtvtveg 92 (106)
T 1qys_A 25 TESELQKVLNEL--MDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDINVTFDGDTVTVEG 92 (106)
T ss_dssp SSSHHHHHHHHH--HHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEE
T ss_pred eHHHHHHHHHHH--HHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcceeEEEcCCeEEEEe
Confidence 345555555444 122111222344445666677888888886 4445555444445567788888764
No 25
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=26.58 E-value=60 Score=19.38 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=16.4
Q ss_pred EEEeCChHHHHHHHHHHHHH
Q psy14675 38 EYLFKNFNEAFGFMTRTALL 57 (105)
Q Consensus 38 ~f~f~~f~~a~~fv~~Va~~ 57 (105)
.|.|+||.+.+.|...+...
T Consensus 4 i~~F~~~edvI~~a~~l~~~ 23 (91)
T 3jtn_A 4 IYQFHSFEDIIQLSESLQRI 23 (91)
T ss_dssp EEEESSHHHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHcccc
Confidence 58999999999988777543
No 26
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=26.36 E-value=14 Score=27.91 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=0.0
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEec
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLVE 30 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~~ 30 (105)
.+.++++|++++.+.|.++||.-..
T Consensus 96 ~~~~~e~e~~~~~e~l~ergwsg~T 120 (308)
T 3bbn_E 96 PPFESEEEIALAYEELYGAAYSGES 120 (308)
T ss_dssp -------------------------
T ss_pred ccccCHHHHHHHHHHhhccCccccc
Confidence 4589999999999999889997654
No 27
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=26.34 E-value=10 Score=30.29 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=23.1
Q ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q psy14675 72 NKVQVTLSTHDCNGLSNKDIKLASFMDT 99 (105)
Q Consensus 72 ~~V~v~l~Th~~~glT~~D~~LA~~id~ 99 (105)
..|.+.+-...+|++|+.|+.||...+.
T Consensus 366 ~~~~~~i~~~~vG~i~~~Dv~~a~~~~a 393 (537)
T 3izy_P 366 HECELDLVHFGVGDISENDVNLAETFHG 393 (537)
T ss_dssp SSCCCCBSCCCBSCBCHHHHHHHHHHSC
T ss_pred CcEEEEEEEecCCCCCHHHHHHHHhcCC
Confidence 3477888888899999999999987654
No 28
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.67 E-value=29 Score=19.00 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhhcCCCCCCCEEec
Q psy14675 7 VKLSADERLSKLEPILKSGWKLVE 30 (105)
Q Consensus 7 ~~Lt~~ei~~~L~~l~~~gW~~~~ 30 (105)
.+||++|+...|. +|.++..
T Consensus 20 rpltDEeLD~~LP----~GY~il~ 39 (47)
T 2fho_A 20 RPLSDEELDAMFP----EGYKVLP 39 (47)
T ss_dssp CCSCTTHHHHHSC----TTEEECC
T ss_pred CCCCHHHHHHhCC----CCCeecC
Confidence 5899999999987 4888764
No 29
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.34 E-value=40 Score=21.93 Aligned_cols=18 Identities=6% Similarity=-0.008 Sum_probs=15.6
Q ss_pred CCcCCCCCCHHHHHhhhc
Q psy14675 2 SASASVKLSADERLSKLE 19 (105)
Q Consensus 2 ~~~~~~~Lt~~ei~~~L~ 19 (105)
|+||.+.|+++|+.+.+.
T Consensus 5 ~~~~~~~l~~ee~~el~~ 22 (127)
T 2ee7_A 5 SSGMASSVDEEALHQLYL 22 (127)
T ss_dssp CCSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 678888999999998775
No 30
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=24.71 E-value=24 Score=22.15 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHH
Q psy14675 86 LSNKDIKLASFM 97 (105)
Q Consensus 86 lT~~D~~LA~~i 97 (105)
|..+|+.||.+|
T Consensus 88 i~~kDiqLa~ri 99 (100)
T 2yfv_A 88 IMRKDMQLARRI 99 (100)
T ss_dssp ECHHHHHHHHHC
T ss_pred CCHHHHHHHHHh
Confidence 467999999986
No 31
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=23.28 E-value=1.7e+02 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=32.1
Q ss_pred HHHHhcCCCceeEeecCEEEEEEEcCCCCCCCHHHHHHHH
Q psy14675 56 LLAEKMDHHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLAS 95 (105)
Q Consensus 56 ~~ae~~~HHP~i~~~~~~V~v~l~Th~~~glT~~D~~LA~ 95 (105)
+++..+---|-+......|.|+|+=.-..|+|.+|++|+-
T Consensus 224 eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakDviL~i 263 (888)
T 2b3y_A 224 EAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTI 263 (888)
T ss_dssp HHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHHHHHHH
T ss_pred HHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhHHHHHH
Confidence 3445566778888889999999977777799999999874
No 32
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=22.16 E-value=77 Score=19.22 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=15.4
Q ss_pred cEEEEEEeCChHHHHHHHH
Q psy14675 34 AIYKEYLFKNFNEAFGFMT 52 (105)
Q Consensus 34 ~L~r~f~f~~f~~a~~fv~ 52 (105)
.+.+.|.|++|.+.+.|..
T Consensus 6 ~~~~i~~F~d~edvI~~a~ 24 (98)
T 3jtp_A 6 KLQFVLRFGDFEDVISLSK 24 (98)
T ss_dssp -CEEEEEESSHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHhC
Confidence 5788999999999887655
No 33
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=22.04 E-value=1.7e+02 Score=18.93 Aligned_cols=27 Identities=4% Similarity=0.108 Sum_probs=22.9
Q ss_pred cEEEEEEeCChHHHHHHHHHHHHHHHh
Q psy14675 34 AIYKEYLFKNFNEAFGFMTRTALLAEK 60 (105)
Q Consensus 34 ~L~r~f~f~~f~~a~~fv~~Va~~ae~ 60 (105)
..+|.|..+|-..+..|+..|-.+-|.
T Consensus 96 t~ErlfEIpDee~cl~fL~~v~~aqea 122 (124)
T 2kie_A 96 IRERRFEIPDEEHCLKFLSAVLAAQKA 122 (124)
T ss_dssp CSCEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred chhheeeCCCHHHHHHHHHHHHHHHhh
Confidence 568999999999999999998766543
No 34
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=21.89 E-value=51 Score=19.51 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=18.8
Q ss_pred EEeCChHHHHHHHHH-HHHHHHhcCCC
Q psy14675 39 YLFKNFNEAFGFMTR-TALLAEKMDHH 64 (105)
Q Consensus 39 f~f~~f~~a~~fv~~-Va~~ae~~~HH 64 (105)
|.+++..+.++++.+ +++-.|...||
T Consensus 60 ~~~~TV~dl~~~I~~kl~~k~E~~~~~ 86 (87)
T 2kjs_A 60 QKLKNVGDLADLVDKKLARKLEHHHHH 86 (87)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccccc
Confidence 577888888888875 66666665555
No 35
>3btp_B Protein VIRE1; TIM barrel, unique topology, novel fold, structural genomics structural proteomics center, ISPC, crown GALL tumor; 2.30A {Agrobacterium tumefaciens str}
Probab=21.72 E-value=55 Score=18.64 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=15.0
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q psy14675 80 THDCNGLSNKDIKLASFMD 98 (105)
Q Consensus 80 Th~~~glT~~D~~LA~~id 98 (105)
.|..+|.|..|++|-..=+
T Consensus 31 ~h~~nGFTsLDL~MIELEn 49 (63)
T 3btp_B 31 HHQSNGFTSLDLEMIELEN 49 (63)
T ss_dssp CTTTTTSCHHHHHHHHHHH
T ss_pred cCCCCCcccccHHHHHHhh
Confidence 5778899999999876543
No 36
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=21.65 E-value=62 Score=19.18 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.0
Q ss_pred cCCCCCCHHHHHhhhcC
Q psy14675 4 SASVKLSADERLSKLEP 20 (105)
Q Consensus 4 ~~~~~Lt~~ei~~~L~~ 20 (105)
....|||+++|.+.|.+
T Consensus 33 d~~kPlSD~~I~~~L~~ 49 (76)
T 2ahq_A 33 DKRKPYSDQEIANILKE 49 (76)
T ss_dssp CSSSCCCHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 34569999999999975
No 37
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=21.46 E-value=38 Score=23.05 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHH
Q psy14675 86 LSNKDIKLASFMDTI 100 (105)
Q Consensus 86 lT~~D~~LA~~id~~ 100 (105)
|..+|+.||.+|--.
T Consensus 137 Im~kDIqLArrIrg~ 151 (156)
T 3r45_A 137 LFPKDVQLARRIRGL 151 (156)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccc
Confidence 467999999999643
No 38
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.14 E-value=65 Score=18.03 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=17.3
Q ss_pred CCCCCHHHHHhhhcCCCCCCCEEe
Q psy14675 6 SVKLSADERLSKLEPILKSGWKLV 29 (105)
Q Consensus 6 ~~~Lt~~ei~~~L~~l~~~gW~~~ 29 (105)
-.|++..|+...|+.. ||...
T Consensus 2 ~mp~~~~elik~L~~~---G~~~~ 22 (70)
T 1whz_A 2 WMPPRPEEVARKLRRL---GFVER 22 (70)
T ss_dssp CCCCCHHHHHHHHHHT---TCEEE
T ss_pred CCCCCHHHHHHHHHHC---CCEEe
Confidence 4578999999999885 99865
No 39
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=20.81 E-value=40 Score=22.48 Aligned_cols=14 Identities=36% Similarity=0.403 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHH
Q psy14675 86 LSNKDIKLASFMDT 99 (105)
Q Consensus 86 lT~~D~~LA~~id~ 99 (105)
|..+|+.||.+|--
T Consensus 121 Im~kDiqLArrirg 134 (140)
T 3nqu_A 121 LFPKDVQLARRIRG 134 (140)
T ss_dssp ECHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhcc
Confidence 45699999999954
Done!