RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14675
(105 letters)
>gnl|CDD|238456 cd00914, PCD_DCoH_subfamily_b, PCD_DCoH: The bifunctional protein
pterin-4alpha-carbinolamine dehydratase (PCD), also
known as DCoH (dimerization cofactor of hepatocyte
nuclear factor-1), is both a transcription activator and
a metabolic enzyme. DCoH stimulates gene expression by
associating with specific DNA binding proteins such as
HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus
enhancer of rudimentary homologue (XERH). DCoH also
catalyzes the dehydration of 4alpha- hydroxy-
tetrahydrobiopterin (4alpha-OH-BH4) to
quinoiddihydrobiopterin, a percursor of the
phenylalanine hydroxylase cofactor BH4
(tetrahydrobiopterin). The DCoH homodimer has a
saddle-shaped structure similar to that of TBP (TATA
binding protein). Two DCoH proteins have been identifed
in humans: DCoH1 and DCoH2. Mutations in human DCoH1
cause hyperphenylalaninemia. Loss of enzymic activity of
DCoH in humans is associated with the depigmentation
disorder vitiligo. DCoH1 has been reported to be
overexpessed in colon cancer carcinomas and in malignant
melanomas.
Length = 76
Score = 153 bits (389), Expect = 1e-50
Identities = 52/76 (68%), Positives = 63/76 (82%)
Query: 25 GWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCN 84
GW LV+ RDAI+K + FK+FNEAFGFMTR AL AEKM+HHPEWFNVYNKV +TL+THD
Sbjct: 1 GWTLVDGRDAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFNVYNKVDITLTTHDAG 60
Query: 85 GLSNKDIKLASFMDTI 100
GL+ +DIKLA F++
Sbjct: 61 GLTERDIKLAKFIEKA 76
>gnl|CDD|234845 PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase;
Validated.
Length = 97
Score = 141 bits (357), Expect = 3e-45
Identities = 50/95 (52%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 8 KLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEW 67
KLS +E L + GW LV +RDAI + + FKNFNEAF FM R A +AE+ DHHP+W
Sbjct: 5 KLSDEEIAELLPQL--PGWTLVGDRDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDW 62
Query: 68 FNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIK 102
FNVYN+V VTL+THD GL+ D LA+ +D +
Sbjct: 63 FNVYNRVTVTLTTHDAGGLTENDFILAAKIDALAG 97
>gnl|CDD|216436 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase.
Pterin 4 alpha carbinolamine dehydratase is also known
as DCoH (dimerisation cofactor of hepatocyte nuclear
factor 1-alpha).
Length = 96
Score = 134 bits (339), Expect = 1e-42
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 4 SASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDH 63
+ LS +E L + GW LV+ DA+ + + FK+F EA F+ A LAE H
Sbjct: 1 GGAPPLSEEEIEELLAEL--PGWSLVDG-DALTRTFKFKDFKEALAFVNAVAELAEAEGH 57
Query: 64 HPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIK 102
HP+ NVYN+V VTL+THD GL+ D LA+ +D + +
Sbjct: 58 HPDLTNVYNRVTVTLTTHDIGGLTENDFILAAKIDALAE 96
>gnl|CDD|238272 cd00488, PCD_DCoH, PCD_DCoH: The bifunctional protein
pterin-4alpha-carbinolamine dehydratase (PCD), also
known as DCoH (dimerization cofactor of hepatocyte
nuclear factor-1), is both a transcription activator and
a metabolic enzyme. DCoH stimulates gene expression by
associating with specific DNA binding proteins such as
HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus
enhancer of rudimentary homologue (XERH). DCoH also
catalyzes the dehydration of 4alpha- hydroxy-
tetrahydrobiopterin (4alpha-OH-BH4) to
quinoiddihydrobiopterin, a percursor of the
phenylalanine hydroxylase cofactor BH4
(tetrahydrobiopterin). The DCoH homodimer has a
saddle-shaped structure similar to that of TBP (TATA
binding protein). Two DCoH proteins have been identifed
in humans: DCoH1 and DCoH2. Mutations in human DCoH1
cause hyperphenylalaninemia. Loss of enzymic activity of
DCoH in humans is associated with the depigmentation
disorder vitiligo. DCoH1 has been reported to be
overexpessed in colon cancer carcinomas and in malignant
melanomas.
Length = 75
Score = 122 bits (309), Expect = 3e-38
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 25 GWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCN 84
GW+L + DA+ + + FK+F EA F+ R A LAE ++HHP+ NVYNKV VTL+THD
Sbjct: 1 GWELAD-GDALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISNVYNKVTVTLTTHDAG 59
Query: 85 GLSNKDIKLASFMDTI 100
GL+ D LA+ +D +
Sbjct: 60 GLTENDFILAAKIDAL 75
>gnl|CDD|225065 COG2154, COG2154, Pterin-4a-carbinolamine dehydratase [Coenzyme
metabolism].
Length = 101
Score = 120 bits (304), Expect = 3e-37
Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 8 KLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEW 67
KL+ +E L + GW+L ++ + + + FKNF +A F+ R A +AEK++HHP+
Sbjct: 5 KLTDEELAELLRAL--PGWELADDGAKLTRTFKFKNFKQAIAFVNRVAEIAEKLNHHPDI 62
Query: 68 FNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIKAE 104
VYN+V VTL+THD GL++ D KLA+ +D + K E
Sbjct: 63 EVVYNRVTVTLTTHDAGGLTDLDFKLAAKIDALAKTE 99
>gnl|CDD|238455 cd00913, PCD_DCoH_subfamily_a, PCD_DCoH: The bifunctional protein
pterin-4alpha-carbinolamine dehydratase (PCD), also
known as DCoH (dimerization cofactor of hepatocyte
nuclear factor-1), is both a transcription activator and
a metabolic enzyme. DCoH stimulates gene expression by
associating with specific DNA binding proteins such as
HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus
enhancer of rudimentary homologue (XERH). DCoH also
catalyzes the dehydration of 4alpha- hydroxy-
tetrahydrobiopterin (4alpha-OH-BH4) to
quinoiddihydrobiopterin, a percursor of the
phenylalanine hydroxylase cofactor BH4
(tetrahydrobiopterin). The DCoH homodimer has a
saddle-shaped structure similar to that of TBP (TATA
binding protein).
Length = 76
Score = 69.2 bits (170), Expect = 4e-17
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 25 GWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCN 84
GW+L ++ + + + FKNF EA F+ +AE HHP+ + +V+VT TH
Sbjct: 1 GWELADDGLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGWGRVRVTWWTHSIG 60
Query: 85 GLSNKDIKLASFMDTI 100
GLS D +A+ +D +
Sbjct: 61 GLSENDFIMAAKIDAL 76
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2. Members
of this protein family are homologous to SecA and part
of the accessory Sec system. This system, including both
five core proteins for export and a variable number of
proteins for glycosylation, operates in certain
Gram-positive pathogens for the maturation and delivery
of serine-rich glycoproteins such as the cell surface
glycoprotein GspB in Streptococcus gordonii [Protein
fate, Protein and peptide secretion and trafficking].
Length = 762
Score = 32.3 bits (74), Expect = 0.026
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 40 LFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTH 81
LFK FN+ G MT T +AEK E+ Y+ V + T+
Sbjct: 355 LFKMFNKLSG-MTGTGKVAEK-----EFIETYSLSVVKIPTN 390
>gnl|CDD|128350 smart00035, CLa, CLUSTERIN alpha chain.
Length = 216
Score = 25.9 bits (57), Expect = 3.6
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 13 ERLSKL-EPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVY 71
ER ++ + +L+S K + N L + NE FG++++ A L + D + Y
Sbjct: 108 ERFTQQYDQLLQSYQKKMLN-----TSSLLEQLNEQFGWVSQLANLTQGEDQY------Y 156
Query: 72 NKVQVTLSTHDCN-----GLSNKDIKL 93
+V T+ +H + G + +KL
Sbjct: 157 LQVT-TVPSHTSDSSVPSGTTKVVVKL 182
>gnl|CDD|239192 cd02791, MopB_CT_Nitrate-R-NapA-like, Nitrate reductases, NapA
(Nitrate-R-NapA), NasA, and NarB catalyze the reduction
of nitrate to nitrite. Monomeric Nas is located in the
cytoplasm and participates in nitrogen assimilation.
Dimeric Nap is located in the periplasm and is coupled
to quinol oxidation via a membrane-anchored tetraheme
cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the
conserved molybdopterin_binding C-terminal (MopB_CT)
region present in many, but not all, MopB homologs.
Length = 122
Score = 25.2 bits (56), Expect = 5.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 51 MTRTALLAEKMDHHPE 66
MTRT + H PE
Sbjct: 19 MTRTGRVPRLNAHVPE 34
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 25.8 bits (57), Expect = 5.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 57 LAEKMDHHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMD 98
LAE D + KVQ TLS +G+ + + SF +
Sbjct: 979 LAEGKDLQELKDALKGKVQETLSAVADDGIEQSGLHIWSFGE 1020
>gnl|CDD|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and
9B (TBC1D9 and TBC1D9B) Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain, repeat 1.
TBC1D9 and TCB1D9B may act as a GTPase-activating
proteins for Rab family protein(s). TBC1D9 and TCB1D9B
contain two N-terminal PH-GRAM domain and a C-terminal
Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This
cd contains the first repeat of the PH-GRAM domain. The
GRAM domain is found in glucosyltransferases,
myotubularins and other putative membrane-associated
proteins. The GRAM domain is part of a larger motif with
a pleckstrin homology (PH) domain fold.
Length = 125
Score = 25.3 bits (56), Expect = 5.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 29 VENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFN 69
V RD + +F N +E F M + A LA K E F
Sbjct: 80 VVTRDKEHYFSMFLNISETFKLMEQLANLAMKQLLDEEGFE 120
>gnl|CDD|226706 COG4255, COG4255, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 318
Score = 25.3 bits (55), Expect = 6.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 62 DHHPEWFNVYNKVQVTLSTHDCN 84
+ EW V +VQ+ L+ H N
Sbjct: 158 EDAREWRRVQTEVQMWLAAHPVN 180
>gnl|CDD|183106 PRK11375, PRK11375, allantoin permease; Provisional.
Length = 484
Score = 25.1 bits (55), Expect = 9.4
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 26 WKLVENRDAIY 36
WKL+EN+D+IY
Sbjct: 364 WKLMENQDSIY 374
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.130 0.374
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,002,441
Number of extensions: 408601
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 22
Length of query: 105
Length of database: 10,937,602
Length adjustment: 70
Effective length of query: 35
Effective length of database: 7,832,822
Effective search space: 274148770
Effective search space used: 274148770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)