RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14675
(105 letters)
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure,
lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A
{Rattus norvegicus} PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Length = 104
Score = 155 bits (393), Expect = 5e-51
Identities = 59/105 (56%), Positives = 78/105 (74%), Gaps = 1/105 (0%)
Query: 1 MSASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEK 60
M+ A +LSA+ER L + GW +E RDAI+K++ FK+FN AFGFM+R AL AEK
Sbjct: 1 MAGKAH-RLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEK 59
Query: 61 MDHHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIKAES 105
+DHHPEWFNVYNKV +TLSTH+C GLS +DI LASF++ + + +
Sbjct: 60 LDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A
{Mus musculus} SCOP: d.74.1.1
Length = 105
Score = 152 bits (386), Expect = 6e-50
Identities = 58/103 (56%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 1 MSASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEK 60
MS+ A L+A+ER + + +GW + RDAIYKE+ FKNFN+AFGFM+R AL AEK
Sbjct: 3 MSSDAQ-WLTAEERDQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEK 61
Query: 61 MDHHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIKA 103
M+HHPEWFNVYNKVQ+TL++HDC GL+ +D+KLA F++ +
Sbjct: 62 MNHHPEWFNVYNKVQITLTSHDCGGLTKRDVKLAQFIEKAAAS 104
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A
{Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Length = 104
Score = 148 bits (375), Expect = 3e-48
Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 1 MSASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEK 60
M+ A + ++ L + + W L + +I +++ F +FNEA+GFM+R AL A+K
Sbjct: 1 MAPLARLAANSARLLQLHKTV--PQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADK 58
Query: 61 MDHHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIK 102
+DHHP W+NVYN V V LSTHD GL+ KD LA FMD K
Sbjct: 59 VDHHPNWYNVYNTVDVELSTHDAAGLTEKDFALAKFMDDAAK 100
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase,
structural genomics, seattle structural genomics CENT
infectious disease, ssgcid; 2.10A {Brucella melitensis}
Length = 97
Score = 147 bits (373), Expect = 6e-48
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 8 KLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEW 67
+L+ E L + GW+ V+ R+AI + + FK+F+ AFGFM + AL AEK+DHHPEW
Sbjct: 5 RLTESEMNEALRAL--DGWQKVDGREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEW 62
Query: 68 FNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTI 100
FN YN+V VTL+TH NG++ DIK+A M+ I
Sbjct: 63 FNAYNRVDVTLATHSENGVTELDIKMARKMNAI 95
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional
stimulator, dimerization cofactor, dehydratase,
4A-carbinolamine dehydratase; 1.2A {Thermus
thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Length = 80
Score = 129 bits (327), Expect = 3e-41
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 26 WKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCNG 85
W+ EN + K + F NF EA F R LAE+ +HHP + +V V TH G
Sbjct: 3 WEERENLKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGG 62
Query: 86 LSNKDIKLASFMDTIIK 102
++ KD ++A D +++
Sbjct: 63 VTEKDREMARLTDALLQ 79
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses,
GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus
kaustophilus}
Length = 101
Score = 128 bits (324), Expect = 1e-40
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 7 VKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPE 66
++L+ +E + LE GWKL + R I K+Y F+++ + F+ R A ++E +HHP
Sbjct: 1 MRLTEEEVQALLEKA--DGWKLADER-WIVKKYRFQDYLQGIEFVRRIAAISENANHHPF 57
Query: 67 WFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIK 102
Y + V LS+ GL+ D LA D +
Sbjct: 58 ISIDYKLITVKLSSWRAKGLTKLDFDLAKQYDEVYN 93
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.083
Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
Query: 57 LAEKM-DHHPEW--FN 69
L++K+ D EW F+
Sbjct: 52 LSDKLVDTRSEWRTFS 67
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Length = 825
Score = 25.8 bits (57), Expect = 3.4
Identities = 1/18 (5%), Positives = 5/18 (27%)
Query: 51 MTRTALLAEKMDHHPEWF 68
+ + +P +
Sbjct: 710 AYHDQYNSLMQERYPMAY 727
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 24.5 bits (54), Expect = 7.0
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 84 NGLSNKDIKLASFMDTIIKA 103
N + K+ S D IIKA
Sbjct: 57 NKILEGRSKI-SVNDFIIKA 75
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides);
2.00A {Arthrobacter SP} SCOP: c.33.1.3
Length = 264
Score = 24.7 bits (54), Expect = 7.8
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 34 AIYKEYLFKNFNEAFGFMTRTALL 57
+IY E FK G+ R A++
Sbjct: 28 SIYNERGFKR---RIGYGNRPAVI 48
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 24.6 bits (54), Expect = 8.8
Identities = 4/36 (11%), Positives = 8/36 (22%), Gaps = 10/36 (27%)
Query: 50 FMTRTALLA----------EKMDHHPEWFNVYNKVQ 75
+ A E+ D + +Q
Sbjct: 468 LPQEHVMWADVILPEATYLERYDDFVLVAHKTPFIQ 503
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase,
oxidoreductase, non heme iron; 1.70A {Sphingobium
yanoikuyae} PDB: 2gbx_A* 2ckf_A
Length = 454
Score = 24.4 bits (53), Expect = 8.9
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Query: 23 KSGWKLVENRDAIYKEYLFKNFN-EAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTH 81
K R YK ++F + EA +D E ++
Sbjct: 129 KQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKS 188
Query: 82 --DCN 84
CN
Sbjct: 189 LLQCN 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.374
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,525,131
Number of extensions: 76348
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 16
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)