RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14675
         (105 letters)



>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 100

 Score =  117 bits (294), Expect = 2e-36
 Identities = 55/93 (59%), Positives = 73/93 (78%)

Query: 8   KLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEW 67
            L+A+ER   +  +  +GW  +  RDAIYKE+ FKNFN+AFGFM+R AL AEKM+HHPEW
Sbjct: 4   WLTAEERDQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEW 63

Query: 68  FNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTI 100
           FNVYNKVQ+TL++HDC GL+ +D+KLA F++  
Sbjct: 64  FNVYNKVQITLTSHDCGGLTKRDVKLAQFIEKA 96


>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase
           (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 99

 Score =  115 bits (289), Expect = 1e-35
 Identities = 58/93 (62%), Positives = 73/93 (78%)

Query: 8   KLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEW 67
           +LSA+ER   L  +   GW  +E RDAI+K++ FK+FN AFGFMTR AL AEK+DHHPEW
Sbjct: 2   RLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEW 61

Query: 68  FNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTI 100
           FNVYNKV +TLSTH+C GLS +DI LASF++ +
Sbjct: 62  FNVYNKVHITLSTHECAGLSERDINLASFIEQV 94


>d1usma_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase
           (PCD)/dimerization cofactor of HNF1 (DCoH) {Thermus
           thermophilus [TaxId: 274]}
          Length = 80

 Score =  102 bits (257), Expect = 4e-31
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query: 26  WKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCNG 85
           W+  EN   + K + F NF EA  F  R   LAE+ +HHP     + +V V   TH   G
Sbjct: 3   WEERENLKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGG 62

Query: 86  LSNKDIKLASFMDTIIK 102
           ++ KD ++A   D +++
Sbjct: 63  VTEKDREMARLTDALLQ 79


>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase
          {Arthrobacter sp. [TaxId: 1667]}
          Length = 253

 Score = 26.3 bits (57), Expect = 0.78
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 16 SKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALL 57
          ++L  +L+      E   +IY E   + F    G+  R A++
Sbjct: 7  ARLAAVLEEA---FEAGTSIYNE---RGFKRRIGYGNRPAVI 42


>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 23.4 bits (50), Expect = 4.5
 Identities = 5/35 (14%), Positives = 14/35 (40%)

Query: 42 KNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQV 76
          +    ++GF+  +   A    H  ++      ++V
Sbjct: 24 EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKV 58


>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max)
           [TaxId: 3847]}
          Length = 490

 Score = 24.0 bits (52), Expect = 4.6
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 73  KVQVTLSTHDCNGLSNKD--IKLASFMDTIIKAE 104
            +Q  +S H C G       I +  ++  I ++ 
Sbjct: 80  TLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESN 113


>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare)
          [TaxId: 4513]}
          Length = 500

 Score = 24.0 bits (52), Expect = 5.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 73 KVQVTLSTHDCNG 85
          K+Q  +S H C G
Sbjct: 79 KLQAIMSFHQCGG 91


>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
          [TaxId: 4120]}
          Length = 498

 Score = 23.6 bits (51), Expect = 7.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 73 KVQVTLSTHDCNG 85
          K+Q  +S H C G
Sbjct: 86 KIQAIMSFHQCGG 98


>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 23.3 bits (50), Expect = 8.0
 Identities = 4/38 (10%), Positives = 12/38 (31%)

Query: 36  YKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNK 73
            ++   ++      +M     L    +  P    V+ +
Sbjct: 267 LQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQ 304


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,058
Number of extensions: 14864
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 12
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)