BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14676
(1827 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/394 (54%), Positives = 278/394 (70%), Gaps = 10/394 (2%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 118 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 177
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 178 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 237
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 238 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 297
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITXXXXXXXXXXXXXXXXXXXXXXXXXXXX 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+T
Sbjct: 298 CIQAFESFVRRCPKEVYPHVSTIINICLKYLT-------YDPNYNYDDEDEDENAMDADG 350
Query: 239 XXXXXXXXXXXXXXXXXMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
MSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 351 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 410
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 411 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 469
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 470 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 503
Score = 267 bits (682), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 130/221 (58%), Positives = 166/221 (75%)
Query: 1086 LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAA 1145
L+ PV+A VGD FYKIT+EALLV QQ VKVIRPL PSS+D P+ D++ CT+ RLKAA
Sbjct: 543 LVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA 602
Query: 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASP 1205
DIDQEVKERAISCMGQIICNLGD L S+LP L I L+RL+NEITRLTTVKALT IA SP
Sbjct: 603 DIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP 662
Query: 1206 LRIDLRPILTDGIPILGSFLRKNQRAXXXXXXXXXXXXXVNYPSAISTEMLNKVTVELAP 1265
L+IDLRP+L +G+PIL SFLRKNQRA NY +++ M++ V EL P
Sbjct: 663 LKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP 722
Query: 1266 LVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIG 1306
L+SESD+H++Q+ ++ LT++AK+ P++L + + + + IG
Sbjct: 723 LISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIG 763
Score = 265 bits (676), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/164 (75%), Positives = 148/164 (90%)
Query: 1611 KTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRDHYDI 1670
K LIREVEMGPFKHTVDDGLDIRKAAFECMYTLLD+CLDR+D+FEFLNH+E GL+DHYDI
Sbjct: 1083 KELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDI 1142
Query: 1671 KMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRA 1730
KMLT+LML RL+ + P+A+LQRL+R+VEPLR T T KVKANSVKQE+EKQDELKRSAMRA
Sbjct: 1143 KMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRA 1202
Query: 1731 VAALLTIQDADKNPALNDFVATIKNSPELQTIFDSMQKDSSLSN 1774
VAALLTI +A+K+P +++F + I ++PEL IF+S+QKDSS +N
Sbjct: 1203 VAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKDSSSTN 1246
Score = 206 bits (525), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 103/160 (64%), Positives = 122/160 (76%), Gaps = 5/160 (3%)
Query: 1302 LPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361
L ++G H DL+ +LK VIL AF+ SEEVKSAASY LGSI+VGNL +Y+PFVL+EI +
Sbjct: 865 LGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITS 924
Query: 1362 QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG 1421
QPKRQYLLLHSLKEII S++ V L+ +V IWA L HCEC EEGTRNVV ECLG
Sbjct: 925 QPKRQYLLLHSLKEII-----SSASVVGLKPYVENIWALLLKHCECAEEGTRNVVVECLG 979
Query: 1422 KLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461
KLTLIDP LLPRL+ L S S+ R++V+TAVKFTISD
Sbjct: 980 KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDH 1019
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/103 (89%), Positives = 101/103 (98%)
Query: 1460 DQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCL 1519
++MTSSDKDFRFMATNDLM+ELQKDSIKLDDDSERKVVKM+L+LLEDKNGEVQNLAVKCL
Sbjct: 36 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 95
Query: 1520 GPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS 1562
GPLV+KVKE+QVETIVD LC+NM+SDKEQLRDISSIGLKTVI
Sbjct: 96 GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIG 138
Score = 180 bits (457), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 155/234 (66%), Gaps = 9/234 (3%)
Query: 616 KALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRAXXXXXXXXXXXXXVNYPSAISTEM 675
KALT IA SPL+IDLRP+L +G+PIL SFLRKNQRA NY +++ M
Sbjct: 653 KALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAM 712
Query: 676 LNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQ 735
++ V EL PL+SESD+H++Q+ ++ LT++AK+ P++L + + SIL +++ + +SPLLQ
Sbjct: 713 IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK-ISGSILNELIGLVRSPLLQ 771
Query: 736 GAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMT-GTAL-HKQAFHSLAKCVAALAI 793
G AL++ML+FF++LV+ L + +LL ML PV + TAL HKQ+++S+AKCVAAL
Sbjct: 772 GGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTR 831
Query: 794 TVQREALPVVEKFLKELKTNK--DDAHQVTIVALS----HLVMSCNLQLTIVAL 841
+E VV +F++++K ++ D + +++L H+ +S L+L V L
Sbjct: 832 ACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVIL 885
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 93/117 (79%), Gaps = 1/117 (0%)
Query: 438 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497
WKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKEREENVK+D+FHAY++LLK TR
Sbjct: 370 WKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 429
Query: 498 TFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELM 554
DP+ M+Q ++P+ +L +QVP++VKAL Q++EKS++TRQ C +L EL+
Sbjct: 430 PVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV 485
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Query: 767 IAPVMTGTALHKQAFHSL-AKCVAALA----ITVQREALPVVEKFLKELKTNKDDAHQVT 821
+ P +G+AL + + +A+A ++VQ EAL ++ L + H
Sbjct: 140 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSI 199
Query: 822 IVALSHLVMSCNLQL---TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQ 878
+ L + S L + TI+AL HLVMSC ++ LI+ LL L+ N S ST RTYIQ
Sbjct: 200 LTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ 259
Query: 879 CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQS 938
C AAI RQAGHR E++E+++PL++K+ +DDELRE+C+QA E+FV+RCPKE+ PH+ +
Sbjct: 260 CIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST 319
Query: 939 I 939
I
Sbjct: 320 I 320
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 550 LRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVK 609
L E MTSSDKDFRFMATNDLM+ELQKDSIKLDDDSERKVVKM+L+LLEDKNGEVQNLAVK
Sbjct: 34 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 93
Query: 610 CLGPL 614
CLGPL
Sbjct: 94 CLGPL 98
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 85/149 (57%), Gaps = 25/149 (16%)
Query: 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA-------------EIISW-- 983
+G H DL+ +LK VIL AF+ SEEVKSAASY LGSI+ EI S
Sbjct: 868 VGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPK 927
Query: 984 ----------QSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS 1033
+ S++ V L+ +V IWA L HCEC EEGTRNVV ECLGKLTLIDP
Sbjct: 928 RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVVECLGKLTLIDPE 987
Query: 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNV 1062
LLPRL+ L S S+ R++ + F +
Sbjct: 988 TLLPRLKGYLISGSSYARSSVVTAVKFTI 1016
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/394 (54%), Positives = 278/394 (70%), Gaps = 10/394 (2%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITXXXXXXXXXXXXXXXXXXXXXXXXXXXX 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+T
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLT-------YDPNYNYDDEDEDENAMDADG 327
Query: 239 XXXXXXXXXXXXXXXXXMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
MSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
Score = 266 bits (681), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 130/221 (58%), Positives = 166/221 (75%)
Query: 1086 LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAA 1145
L+ PV+A VGD FYKIT+EALLV QQ VKVIRPL PSS+D P+ D++ CT+ RLKAA
Sbjct: 520 LVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA 579
Query: 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASP 1205
DIDQEVKERAISCMGQIICNLGD L S+LP L I L+RL+NEITRLTTVKALT IA SP
Sbjct: 580 DIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP 639
Query: 1206 LRIDLRPILTDGIPILGSFLRKNQRAXXXXXXXXXXXXXVNYPSAISTEMLNKVTVELAP 1265
L+IDLRP+L +G+PIL SFLRKNQRA NY +++ M++ V EL P
Sbjct: 640 LKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP 699
Query: 1266 LVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIG 1306
L+SESD+H++Q+ ++ LT++AK+ P++L + + + + IG
Sbjct: 700 LISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIG 740
Score = 265 bits (676), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/164 (75%), Positives = 148/164 (90%)
Query: 1611 KTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRDHYDI 1670
K LIREVEMGPFKHTVDDGLDIRKAAFECMYTLLD+CLDR+D+FEFLNH+E GL+DHYDI
Sbjct: 1060 KELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDI 1119
Query: 1671 KMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRA 1730
KMLT+LML RL+ + P+A+LQRL+R+VEPLR T T KVKANSVKQE+EKQDELKRSAMRA
Sbjct: 1120 KMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRA 1179
Query: 1731 VAALLTIQDADKNPALNDFVATIKNSPELQTIFDSMQKDSSLSN 1774
VAALLTI +A+K+P +++F + I ++PEL IF+S+QKDSS +N
Sbjct: 1180 VAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKDSSSTN 1223
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 123/160 (76%), Gaps = 5/160 (3%)
Query: 1302 LPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361
L ++G H DL+ +LK VIL AF+ SEEVKSAASY LGSI+VGNL +Y+PFVL+EI +
Sbjct: 842 LGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITS 901
Query: 1362 QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG 1421
QPKRQYLLLHSLKEII S++ V L+ +V IWA L HCEC EEGTRNVVAECLG
Sbjct: 902 QPKRQYLLLHSLKEII-----SSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG 956
Query: 1422 KLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461
KLTLIDP LLPRL+ L S S+ R++V+TAVKFTISD
Sbjct: 957 KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDH 996
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/103 (89%), Positives = 101/103 (98%)
Query: 1460 DQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCL 1519
++MTSSDKDFRFMATNDLM+ELQKDSIKLDDDSERKVVKM+L+LLEDKNGEVQNLAVKCL
Sbjct: 13 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 72
Query: 1520 GPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS 1562
GPLV+KVKE+QVETIVD LC+NM+SDKEQLRDISSIGLKTVI
Sbjct: 73 GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIG 115
Score = 180 bits (456), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 155/234 (66%), Gaps = 9/234 (3%)
Query: 616 KALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRAXXXXXXXXXXXXXVNYPSAISTEM 675
KALT IA SPL+IDLRP+L +G+PIL SFLRKNQRA NY +++ M
Sbjct: 630 KALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAM 689
Query: 676 LNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQ 735
++ V EL PL+SESD+H++Q+ ++ LT++AK+ P++L + + SIL +++ + +SPLLQ
Sbjct: 690 IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK-ISGSILNELIGLVRSPLLQ 748
Query: 736 GAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMT-GTAL-HKQAFHSLAKCVAALAI 793
G AL++ML+FF++LV+ L + +LL ML PV + TAL HKQ+++S+AKCVAAL
Sbjct: 749 GGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTR 808
Query: 794 TVQREALPVVEKFLKELKTNK--DDAHQVTIVALS----HLVMSCNLQLTIVAL 841
+E VV +F++++K ++ D + +++L H+ +S L+L V L
Sbjct: 809 ACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVIL 862
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 93/117 (79%), Gaps = 1/117 (0%)
Query: 438 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497
WKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKEREENVK+D+FHAY++LLK TR
Sbjct: 347 WKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 406
Query: 498 TFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELM 554
DP+ M+Q ++P+ +L +QVP++VKAL Q++EKS++TRQ C +L EL+
Sbjct: 407 PVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV 462
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Query: 767 IAPVMTGTALHKQAFHSL-AKCVAALA----ITVQREALPVVEKFLKELKTNKDDAHQVT 821
+ P +G+AL + + +A+A ++VQ EAL ++ L + H
Sbjct: 117 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSI 176
Query: 822 IVALSHLVMSCNLQL---TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQ 878
+ L + S L + TI+AL HLVMSC ++ LI+ LL L+ N S ST RTYIQ
Sbjct: 177 LTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ 236
Query: 879 CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQS 938
C AAI RQAGHR E++E+++PL++K+ +DDELRE+C+QA E+FV+RCPKE+ PH+ +
Sbjct: 237 CIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST 296
Query: 939 I 939
I
Sbjct: 297 I 297
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 550 LRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVK 609
L E MTSSDKDFRFMATNDLM+ELQKDSIKLDDDSERKVVKM+L+LLEDKNGEVQNLAVK
Sbjct: 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 70
Query: 610 CLGPL 614
CLGPL
Sbjct: 71 CLGPL 75
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 86/149 (57%), Gaps = 25/149 (16%)
Query: 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA-------------EIISW-- 983
+G H DL+ +LK VIL AF+ SEEVKSAASY LGSI+ EI S
Sbjct: 845 VGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPK 904
Query: 984 ----------QSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS 1033
+ S++ V L+ +V IWA L HCEC EEGTRNVVAECLGKLTLIDP
Sbjct: 905 RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE 964
Query: 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNV 1062
LLPRL+ L S S+ R++ + F +
Sbjct: 965 TLLPRLKGYLISGSSYARSSVVTAVKFTI 993
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 569 LMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 606
L++ L++ KLD+D +R++ LR+L+ KN EVQ L
Sbjct: 180 LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL 217
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 1477 LMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 1514
L++ L++ KLD+D +R++ LR+L+ KN EVQ L
Sbjct: 180 LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL 217
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 569 LMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 606
L++ L++ KLD+D +R++ LR+L+ KN EVQ L
Sbjct: 188 LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL 225
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 1477 LMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 1514
L++ L++ KLD+D +R++ LR+L+ KN EVQ L
Sbjct: 188 LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL 225
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 569 LMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 606
L++ L++ KLD+D +R++ LR+L+ KN EVQ L
Sbjct: 181 LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL 218
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 1477 LMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 1514
L++ L++ KLD+D +R++ LR+L+ KN EVQ L
Sbjct: 181 LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL 218
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 568 DLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 606
+L+ L++ + KLDDD++R++ LR+L+ KN +Q +
Sbjct: 207 ELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEI 245
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 1476 DLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 1514
+L+ L++ + KLDDD++R++ LR+L+ KN +Q +
Sbjct: 207 ELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEI 245
>pdb|3BYD|A Chain A, Crystal Structure Of Beta-Lactamase Oxy-1-1 From Klebsiella
Oxytoca
Length = 267
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 928 CPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEE--------VKSAASYTLGSI-- 977
P+++T QSIG D+T D + LN+ P + +S TLG+
Sbjct: 123 GPEKVTAFAQSIG---DVTFRLDRTEPALNSAIPGDKRDTTTPLAMAESLRKLTLGNALG 179
Query: 978 ----AEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS 1033
A++++W +T+G ++ +PA WA + + GT N +A +I P
Sbjct: 180 EQQRAQLVTWLKGNTTGGQSIRAGLPASWA-VGDKTGAGDYGTTNDIA-------VIWPE 231
Query: 1034 NLLP 1037
N P
Sbjct: 232 NHAP 235
>pdb|2R02|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Ypltsl Late Domain
pdb|2R03|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE YPDL Late
Domain
pdb|2R05|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Yplasl Late Domain
Length = 697
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092
L ++QESLK L++ S+Q F+ + Q N+ N EE + Y ++A
Sbjct: 608 GGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVA 667
Query: 1093 SV--GDNFYKITAEALLVLQ 1110
++ G FY E L+ Q
Sbjct: 668 NLKEGTKFYNELTEILVRFQ 687
>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239
Pykevtedl Late Domain
pdb|2XS8|A Chain A, Crystal Structure Of Alix In Complex With The Sivagmtan-1
Aydparkll Late Domain
Length = 704
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092
L ++QESLK L++ S+Q F+ + Q N+ N EE + Y ++A
Sbjct: 615 GGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVA 674
Query: 1093 SV--GDNFYKITAEALLVLQ 1110
++ G FY E L+ Q
Sbjct: 675 NLKEGTKFYNELTEILVRFQ 694
>pdb|2OEV|A Chain A, Crystal Structure Of AlixAIP1
Length = 705
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092
L ++QESLK L++ S+Q F+ + Q N+ N EE + Y ++A
Sbjct: 616 GGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVA 675
Query: 1093 SV--GDNFYKITAEALLVLQ 1110
++ G FY E L+ Q
Sbjct: 676 NLKEGTKFYNELTEILVRFQ 695
>pdb|2OJQ|A Chain A, Crystal Structure Of Alix V Domain
Length = 348
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092
L ++QESLK L++ S+Q F+ Q N+ N EE + Y ++A
Sbjct: 255 GGLTTKVQESLKKQEGLLKNIQVSHQEFSKXKQSNNEANLREEVLKNLATAYDNFVELVA 314
Query: 1093 SV--GDNFYKITAEALLVLQ 1110
++ G FY E L+ Q
Sbjct: 315 NLKEGTKFYNELTEILVRFQ 334
>pdb|2OEX|A Chain A, Structure Of AlixAIP1 V DOMAIN
pdb|2OEX|B Chain B, Structure Of AlixAIP1 V DOMAIN
Length = 351
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092
L ++QESLK L++ S+Q F+ Q N+ N EE + Y ++A
Sbjct: 258 GGLTTKVQESLKKQEGLLKNIQVSHQEFSKXKQSNNEANLREEVLKNLATAYDNFVELVA 317
Query: 1093 SV--GDNFYKITAEALLVLQ 1110
++ G FY E L+ Q
Sbjct: 318 NLKEGTKFYNELTEILVRFQ 337
>pdb|1ZLP|A Chain A, Petal Death Protein Psr132 With Cysteine-Linked
Glutaraldehyde Forming A Thiohemiacetal Adduct
pdb|1ZLP|B Chain B, Petal Death Protein Psr132 With Cysteine-Linked
Glutaraldehyde Forming A Thiohemiacetal Adduct
Length = 318
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 750 VLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKE 809
V A+ GL + ++ P+ T + FH +A + A+ T + AL + K LKE
Sbjct: 220 VSAKTKGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAVYATAR--ALVNIMKILKE 277
Query: 810 LKTNKDDAHQV 820
T +DD Q+
Sbjct: 278 KGTTRDDLDQM 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,674,852
Number of Sequences: 62578
Number of extensions: 1536465
Number of successful extensions: 4051
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3986
Number of HSP's gapped (non-prelim): 62
length of query: 1827
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1714
effective length of database: 7,902,023
effective search space: 13544067422
effective search space used: 13544067422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)