Query psy14676
Match_columns 1827
No_of_seqs 506 out of 1776
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:47:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1824|consensus 100.0 2E-181 5E-186 1624.6 85.0 1027 1-1784 94-1233(1233)
2 KOG1824|consensus 100.0 4E-49 8.7E-54 478.6 69.9 880 5-1293 187-1139(1233)
3 KOG2023|consensus 100.0 1.1E-49 2.4E-54 469.2 43.2 793 583-1772 10-857 (885)
4 PF08623 TIP120: TATA-binding 100.0 2.8E-50 6.1E-55 422.7 10.0 164 1585-1756 4-169 (169)
5 KOG2171|consensus 100.0 5.6E-39 1.2E-43 406.3 77.4 814 35-1331 116-1032(1075)
6 KOG2023|consensus 100.0 1.1E-40 2.3E-45 393.6 39.2 541 8-622 106-697 (885)
7 KOG2171|consensus 100.0 9.7E-31 2.1E-35 331.9 87.1 947 42-1460 9-1002(1075)
8 KOG1241|consensus 100.0 7.7E-28 1.7E-32 290.9 54.5 691 8-923 88-852 (859)
9 KOG1241|consensus 99.9 6.5E-24 1.4E-28 257.2 49.8 636 670-1435 82-821 (859)
10 COG5215 KAP95 Karyopherin (imp 99.9 1.9E-19 4.1E-24 210.8 57.1 391 8-496 92-531 (858)
11 PLN03200 cellulose synthase-in 99.9 3E-16 6.5E-21 215.8 80.1 1250 38-1568 59-1596(2102)
12 KOG0211|consensus 99.9 7.5E-20 1.6E-24 233.7 32.4 539 7-615 97-663 (759)
13 PLN03200 cellulose synthase-in 99.8 1.8E-13 4E-18 188.8 89.4 351 36-494 445-811 (2102)
14 KOG0211|consensus 99.8 7.4E-19 1.6E-23 224.7 34.1 543 873-1570 99-664 (759)
15 COG5215 KAP95 Karyopherin (imp 99.8 7.8E-16 1.7E-20 180.9 50.0 627 671-1430 87-814 (858)
16 KOG1242|consensus 99.8 4.1E-17 9E-22 198.4 38.9 533 89-926 27-564 (569)
17 KOG0213|consensus 99.8 6.7E-14 1.4E-18 168.7 52.4 637 261-1291 417-1069(1172)
18 KOG0915|consensus 99.7 1.1E-14 2.3E-19 188.6 42.1 333 42-480 823-1187(1702)
19 KOG0213|consensus 99.7 8.1E-13 1.8E-17 159.5 55.0 647 8-940 492-1156(1172)
20 COG5181 HSH155 U2 snRNP splice 99.7 5.8E-13 1.3E-17 158.0 39.7 537 436-1294 329-877 (975)
21 KOG0915|consensus 99.6 6.2E-10 1.3E-14 145.5 57.9 607 283-1268 816-1450(1702)
22 KOG1242|consensus 99.5 2E-11 4.4E-16 149.4 39.3 430 36-670 54-488 (569)
23 COG5181 HSH155 U2 snRNP splice 99.5 1.9E-10 4.1E-15 137.2 43.5 723 33-1072 203-956 (975)
24 KOG1248|consensus 99.4 2.6E-07 5.7E-12 120.1 65.9 406 871-1354 490-911 (1176)
25 PF01602 Adaptin_N: Adaptin N 99.4 2E-09 4.4E-14 141.0 41.0 426 1001-1522 80-522 (526)
26 KOG1248|consensus 99.4 2.7E-06 5.8E-11 111.1 67.2 814 14-1184 73-919 (1176)
27 KOG0212|consensus 99.3 1.3E-10 2.9E-15 138.5 25.5 362 851-1289 38-408 (675)
28 KOG1991|consensus 99.2 8E-06 1.7E-10 104.9 61.1 372 833-1268 478-872 (1010)
29 PRK09687 putative lyase; Provi 99.2 1.8E-09 3.9E-14 127.5 22.3 238 1035-1361 24-263 (280)
30 KOG0212|consensus 99.2 6.7E-08 1.5E-12 116.0 35.2 393 84-615 5-405 (675)
31 PRK13800 putative oxidoreducta 99.2 2.4E-09 5.2E-14 146.8 25.8 273 1177-1568 622-897 (897)
32 PRK13800 putative oxidoreducta 99.1 2.8E-09 6.2E-14 146.1 25.7 272 1086-1456 622-896 (897)
33 PF01602 Adaptin_N: Adaptin N 99.1 1E-07 2.2E-12 125.1 38.6 454 1010-1566 52-520 (526)
34 PRK09687 putative lyase; Provi 99.1 3.4E-09 7.3E-14 125.2 21.2 247 1138-1456 28-279 (280)
35 KOG1943|consensus 99.1 6.9E-05 1.5E-09 97.2 58.6 135 78-213 340-483 (1133)
36 PTZ00429 beta-adaptin; Provisi 99.1 1.6E-06 3.5E-11 114.1 45.5 424 1003-1522 108-544 (746)
37 KOG1943|consensus 99.0 2E-05 4.3E-10 102.0 48.8 469 833-1346 357-882 (1133)
38 PTZ00429 beta-adaptin; Provisi 98.8 1.7E-05 3.7E-10 104.6 42.0 385 997-1451 137-538 (746)
39 KOG0166|consensus 98.7 1.6E-06 3.4E-11 106.9 24.3 265 3-313 77-350 (514)
40 PF10508 Proteasom_PSMB: Prote 98.7 1.2E-05 2.6E-10 103.6 32.9 395 5-495 52-463 (503)
41 KOG1062|consensus 98.7 3.6E-05 7.9E-10 96.9 34.7 291 264-668 127-417 (866)
42 KOG0891|consensus 98.7 0.0062 1.3E-07 88.1 60.5 197 999-1219 564-773 (2341)
43 KOG0166|consensus 98.6 4.9E-06 1.1E-10 102.6 24.0 347 1036-1460 68-437 (514)
44 PF12348 CLASP_N: CLASP N term 98.4 3E-06 6.5E-11 98.3 15.9 199 344-623 5-213 (228)
45 PF12460 MMS19_C: RNAPII trans 98.4 3.1E-05 6.7E-10 97.8 25.3 290 38-395 91-414 (415)
46 COG5240 SEC21 Vesicle coat com 98.4 0.0023 5.1E-08 77.7 38.8 103 581-699 258-361 (898)
47 KOG2274|consensus 98.4 0.02 4.3E-07 73.9 48.8 246 1044-1359 501-759 (1005)
48 KOG1992|consensus 98.4 0.024 5.1E-07 72.5 57.4 201 5-209 52-297 (960)
49 PF10508 Proteasom_PSMB: Prote 98.4 0.00024 5.2E-09 91.7 32.5 408 84-619 43-465 (503)
50 KOG2274|consensus 98.4 0.031 6.6E-07 72.3 51.5 281 836-1188 469-762 (1005)
51 KOG0891|consensus 98.3 0.065 1.4E-06 78.1 55.8 542 473-1169 489-1046(2341)
52 PF12348 CLASP_N: CLASP N term 98.3 1.6E-05 3.4E-10 92.3 16.7 183 8-193 23-211 (228)
53 KOG1991|consensus 98.3 0.00084 1.8E-08 87.0 32.8 347 35-474 408-778 (1010)
54 KOG1060|consensus 98.3 0.0006 1.3E-08 85.8 30.0 428 864-1361 44-552 (968)
55 KOG1967|consensus 98.3 0.051 1.1E-06 70.5 59.9 153 1081-1241 863-1020(1030)
56 KOG1240|consensus 98.2 4.5E-05 9.8E-10 99.3 20.1 295 1035-1380 423-727 (1431)
57 KOG1020|consensus 98.2 0.0024 5.2E-08 85.8 36.0 512 41-619 820-1408(1692)
58 KOG1060|consensus 98.2 0.0047 1E-07 78.1 36.3 439 994-1540 69-548 (968)
59 KOG4224|consensus 98.2 0.00018 3.9E-09 82.8 22.1 401 1094-1571 57-494 (550)
60 PF12460 MMS19_C: RNAPII trans 98.2 0.0026 5.7E-08 80.5 34.9 347 33-473 34-414 (415)
61 KOG1062|consensus 98.1 0.0032 6.9E-08 80.1 32.7 384 1003-1459 110-544 (866)
62 KOG1240|consensus 98.1 0.0002 4.3E-09 93.6 22.1 289 1219-1571 425-726 (1431)
63 KOG4224|consensus 98.1 0.00055 1.2E-08 79.0 23.1 336 1035-1446 169-510 (550)
64 KOG1059|consensus 98.1 0.0099 2.1E-07 74.7 35.5 338 1020-1425 129-490 (877)
65 KOG1967|consensus 98.0 0.13 2.7E-06 67.1 60.3 229 776-1115 790-1025(1030)
66 KOG1020|consensus 98.0 0.18 4E-06 68.7 51.7 204 1103-1343 1190-1403(1692)
67 KOG4535|consensus 98.0 0.025 5.4E-07 67.9 35.6 99 1098-1203 497-603 (728)
68 KOG1059|consensus 98.0 0.0054 1.2E-07 76.9 31.3 281 837-1188 129-425 (877)
69 KOG4535|consensus 98.0 0.0011 2.4E-08 78.9 24.0 214 1048-1279 363-595 (728)
70 PF12755 Vac14_Fab1_bd: Vacuol 98.0 3.6E-05 7.8E-10 75.6 9.8 94 362-493 2-95 (97)
71 KOG1820|consensus 97.9 0.00065 1.4E-08 89.7 23.2 200 342-622 249-449 (815)
72 KOG2259|consensus 97.9 0.00082 1.8E-08 83.1 21.2 280 79-397 198-493 (823)
73 PF12755 Vac14_Fab1_bd: Vacuol 97.9 0.00012 2.6E-09 71.9 11.6 90 260-369 2-91 (97)
74 COG5240 SEC21 Vesicle coat com 97.9 0.14 3.1E-06 62.9 39.1 280 1174-1522 262-553 (898)
75 TIGR02270 conserved hypothetic 97.8 0.0016 3.5E-08 81.0 23.2 237 1136-1458 57-295 (410)
76 KOG1992|consensus 97.8 0.28 6.1E-06 63.2 54.9 268 1083-1407 496-774 (960)
77 KOG2032|consensus 97.8 0.0071 1.5E-07 73.4 25.9 200 1045-1267 191-393 (533)
78 COG1413 FOG: HEAT repeat [Ener 97.8 0.0035 7.5E-08 77.3 24.5 255 1135-1459 45-304 (335)
79 TIGR02270 conserved hypothetic 97.7 0.0012 2.6E-08 82.0 19.0 186 1002-1243 88-294 (410)
80 COG1413 FOG: HEAT repeat [Ener 97.6 0.004 8.6E-08 76.8 22.3 246 1035-1377 44-303 (335)
81 PF13513 HEAT_EZ: HEAT-like re 97.6 4.3E-05 9.3E-10 67.0 3.3 55 258-312 1-55 (55)
82 KOG1061|consensus 97.6 0.042 9.1E-07 70.6 29.9 365 833-1336 102-480 (734)
83 KOG2032|consensus 97.5 0.062 1.4E-06 65.6 29.3 104 259-381 273-377 (533)
84 KOG2021|consensus 97.5 0.59 1.3E-05 59.8 46.0 298 50-396 51-391 (980)
85 KOG2956|consensus 97.5 0.0069 1.5E-07 73.1 20.7 218 116-402 285-505 (516)
86 KOG2259|consensus 97.5 0.019 4.2E-07 71.5 24.5 286 1044-1378 208-511 (823)
87 KOG4653|consensus 97.5 0.0075 1.6E-07 77.2 21.0 219 49-313 738-963 (982)
88 COG5656 SXM1 Importin, protein 97.4 0.23 5E-06 63.2 33.1 308 35-396 406-735 (970)
89 PF13646 HEAT_2: HEAT repeats; 97.4 0.0012 2.5E-08 64.0 10.5 88 39-143 1-88 (88)
90 COG5064 SRP1 Karyopherin (impo 97.4 0.0071 1.5E-07 69.5 17.8 237 1086-1349 115-360 (526)
91 KOG0414|consensus 97.4 1.3 2.7E-05 59.9 50.0 132 58-191 291-431 (1251)
92 KOG1820|consensus 97.4 0.011 2.3E-07 78.6 22.0 344 76-497 60-446 (815)
93 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00022 4.8E-09 62.5 3.3 54 870-923 1-54 (55)
94 KOG2956|consensus 97.2 0.01 2.2E-07 71.7 17.9 172 33-209 325-499 (516)
95 KOG0168|consensus 97.2 0.14 3E-06 66.0 28.0 174 35-212 209-392 (1051)
96 KOG1077|consensus 97.2 0.49 1.1E-05 59.9 31.8 390 1010-1461 121-552 (938)
97 PF12717 Cnd1: non-SMC mitotic 97.2 0.0048 1E-07 68.5 13.8 112 51-167 1-113 (178)
98 PF03378 CAS_CSE1: CAS/CSE pro 97.2 0.14 3E-06 64.7 28.2 227 34-312 23-270 (435)
99 KOG1078|consensus 97.2 0.14 3.1E-06 65.5 27.7 264 1187-1523 258-531 (865)
100 COG5064 SRP1 Karyopherin (impo 97.2 0.015 3.3E-07 66.9 17.5 260 1176-1462 114-401 (526)
101 KOG2021|consensus 97.2 1.5 3.3E-05 56.3 36.1 332 34-396 182-585 (980)
102 KOG4524|consensus 97.1 0.067 1.4E-06 70.0 24.7 308 57-400 567-902 (1014)
103 PF12717 Cnd1: non-SMC mitotic 97.1 0.003 6.5E-08 70.1 11.0 107 1410-1543 2-111 (178)
104 PF11865 DUF3385: Domain of un 97.1 0.0021 4.5E-08 69.8 9.2 153 755-926 4-157 (160)
105 KOG0567|consensus 97.1 0.017 3.6E-07 65.3 16.1 231 957-1245 43-280 (289)
106 KOG1061|consensus 97.1 0.35 7.7E-06 62.5 29.7 410 893-1370 45-481 (734)
107 KOG4653|consensus 96.9 0.023 5E-07 73.0 17.5 198 858-1172 727-926 (982)
108 KOG4413|consensus 96.9 0.32 7E-06 56.2 24.2 349 875-1287 62-439 (524)
109 PF13646 HEAT_2: HEAT repeats; 96.8 0.0052 1.1E-07 59.4 8.5 86 1432-1565 1-87 (88)
110 KOG0946|consensus 96.7 3.4 7.3E-05 53.7 34.7 61 437-497 135-198 (970)
111 PF05004 IFRD: Interferon-rela 96.7 0.049 1.1E-06 65.8 17.9 188 1044-1246 53-258 (309)
112 KOG0168|consensus 96.7 1.7 3.7E-05 56.6 31.0 192 1036-1247 169-366 (1051)
113 cd00020 ARM Armadillo/beta-cat 96.7 0.007 1.5E-07 61.9 9.0 97 258-374 21-119 (120)
114 PF08506 Cse1: Cse1; InterPro 96.6 0.35 7.6E-06 59.9 24.8 188 191-454 73-285 (370)
115 PF05004 IFRD: Interferon-rela 96.6 0.35 7.6E-06 58.5 24.4 202 81-317 45-260 (309)
116 KOG2062|consensus 96.6 0.17 3.7E-06 64.2 21.1 264 36-399 412-677 (929)
117 KOG2025|consensus 96.5 0.019 4.1E-07 72.2 12.7 168 1433-1680 88-256 (892)
118 KOG1058|consensus 96.5 1.3 2.9E-05 56.8 28.5 332 1035-1410 58-410 (948)
119 PF12719 Cnd3: Nuclear condens 96.5 0.2 4.4E-06 60.5 21.4 130 57-188 2-143 (298)
120 KOG0413|consensus 96.5 5.2 0.00011 52.7 33.5 122 1411-1572 946-1075(1529)
121 cd00020 ARM Armadillo/beta-cat 96.4 0.013 2.9E-07 59.9 9.3 107 80-187 8-119 (120)
122 KOG1822|consensus 96.3 10 0.00022 54.1 69.7 156 59-214 853-1014(2067)
123 KOG1993|consensus 96.3 2.8 6.1E-05 54.4 29.4 298 35-397 429-750 (978)
124 KOG0392|consensus 96.3 0.083 1.8E-06 70.5 16.6 194 362-633 749-942 (1549)
125 PF03378 CAS_CSE1: CAS/CSE pro 96.2 0.89 1.9E-05 57.5 25.4 224 854-1154 25-263 (435)
126 KOG0414|consensus 96.2 8.7 0.00019 52.4 63.4 73 286-379 360-432 (1251)
127 PF05804 KAP: Kinesin-associat 96.2 2.3 5E-05 56.6 29.5 357 1153-1573 267-652 (708)
128 KOG1078|consensus 96.1 4.2 9.1E-05 52.9 30.0 237 1009-1286 291-531 (865)
129 KOG4413|consensus 96.1 2.2 4.7E-05 49.7 25.0 273 1219-1527 46-336 (524)
130 PF02985 HEAT: HEAT repeat; I 96.1 0.0061 1.3E-07 46.5 3.5 30 1496-1525 1-30 (31)
131 PF14500 MMS19_N: Dos2-interac 96.1 1.2 2.6E-05 52.5 24.2 238 50-353 11-257 (262)
132 PF08506 Cse1: Cse1; InterPro 96.1 0.11 2.4E-06 64.1 16.3 228 133-397 111-356 (370)
133 PF14500 MMS19_N: Dos2-interac 96.1 0.56 1.2E-05 55.3 21.4 228 1146-1403 10-257 (262)
134 PF13251 DUF4042: Domain of un 96.1 0.049 1.1E-06 60.0 11.5 137 54-190 2-176 (182)
135 KOG1993|consensus 96.0 8 0.00017 50.5 45.9 179 1050-1250 460-649 (978)
136 KOG1243|consensus 95.9 0.076 1.6E-06 67.7 13.6 233 15-316 277-517 (690)
137 COG5096 Vesicle coat complex, 95.9 7.8 0.00017 51.6 31.9 103 1035-1165 93-196 (757)
138 PF05804 KAP: Kinesin-associat 95.8 3 6.4E-05 55.6 28.4 339 1033-1428 289-652 (708)
139 PF08167 RIX1: rRNA processing 95.8 0.24 5.3E-06 54.2 15.5 132 76-209 22-164 (165)
140 PF11865 DUF3385: Domain of un 95.7 0.072 1.6E-06 57.9 10.8 142 34-188 7-157 (160)
141 PF13251 DUF4042: Domain of un 95.6 0.11 2.3E-06 57.4 11.5 162 259-497 1-177 (182)
142 KOG0413|consensus 95.5 13 0.00029 49.2 57.0 129 1014-1168 945-1077(1529)
143 PLN03076 ARF guanine nucleotid 95.5 7.9 0.00017 56.7 32.6 155 56-210 1110-1279(1780)
144 COG5096 Vesicle coat complex, 95.4 0.17 3.6E-06 66.5 14.3 154 1369-1568 36-193 (757)
145 PF10274 ParcG: Parkin co-regu 95.3 0.16 3.4E-06 55.6 11.5 94 283-395 36-132 (183)
146 PF04826 Arm_2: Armadillo-like 95.2 0.11 2.4E-06 60.8 10.9 141 39-185 14-160 (254)
147 KOG0889|consensus 95.1 38 0.00082 51.8 75.7 119 86-206 12-148 (3550)
148 PF02985 HEAT: HEAT repeat; I 95.1 0.032 7E-07 42.6 4.0 31 80-110 1-31 (31)
149 KOG1077|consensus 95.0 16 0.00035 47.2 35.9 288 34-396 108-413 (938)
150 PF10521 DUF2454: Protein of u 95.0 0.69 1.5E-05 55.4 17.1 155 13-171 97-277 (282)
151 KOG1058|consensus 94.8 19 0.00041 47.0 31.6 264 1009-1331 108-411 (948)
152 KOG1525|consensus 94.8 7 0.00015 55.1 27.6 150 282-494 256-405 (1266)
153 KOG0392|consensus 94.8 0.29 6.2E-06 65.7 13.8 178 9-191 750-928 (1549)
154 PF10274 ParcG: Parkin co-regu 94.6 0.14 3E-06 56.1 8.9 122 1033-1168 37-168 (183)
155 KOG2025|consensus 94.5 0.64 1.4E-05 59.2 15.4 125 16-144 66-190 (892)
156 PF08167 RIX1: rRNA processing 94.5 0.39 8.4E-06 52.6 12.2 132 33-168 21-164 (165)
157 PF04826 Arm_2: Armadillo-like 94.5 3 6.6E-05 48.9 20.1 234 78-364 11-251 (254)
158 PF05918 API5: Apoptosis inhib 94.3 2 4.4E-05 55.2 19.6 256 868-1209 34-303 (556)
159 cd00256 VATPase_H VATPase_H, r 94.2 13 0.00028 46.9 25.9 168 43-211 59-239 (429)
160 KOG1243|consensus 94.2 0.33 7.2E-06 62.2 12.1 185 1083-1290 328-518 (690)
161 KOG1525|consensus 94.1 1.4 3E-05 61.7 18.7 239 62-375 164-405 (1266)
162 COG5656 SXM1 Importin, protein 94.0 27 0.00059 45.5 29.6 108 830-941 473-583 (970)
163 PF05918 API5: Apoptosis inhib 94.0 3.2 7E-05 53.4 20.4 100 43-149 65-164 (556)
164 KOG2549|consensus 93.9 0.52 1.1E-05 58.8 12.7 130 1130-1271 204-352 (576)
165 PLN03076 ARF guanine nucleotid 93.8 19 0.00042 52.9 29.6 262 35-317 1180-1492(1780)
166 KOG2933|consensus 93.3 1.3 2.8E-05 51.8 13.7 113 345-494 87-199 (334)
167 KOG1822|consensus 93.1 62 0.0013 46.9 73.4 192 80-316 52-250 (2067)
168 PF08064 UME: UME (NUC010) dom 93.1 0.67 1.4E-05 46.8 10.0 80 128-209 25-105 (107)
169 COG5095 TAF6 Transcription ini 93.0 1.9 4.2E-05 49.6 14.2 80 1126-1205 270-361 (450)
170 KOG0567|consensus 92.8 4.2 9.1E-05 46.7 16.4 204 852-1111 64-277 (289)
171 COG5218 YCG1 Chromosome conden 92.7 26 0.00057 44.3 24.1 212 1212-1464 87-302 (885)
172 KOG1949|consensus 92.6 0.74 1.6E-05 58.3 11.3 149 1088-1243 177-329 (1005)
173 KOG2933|consensus 92.6 1.4 3.1E-05 51.4 12.8 179 256-497 100-280 (334)
174 COG5218 YCG1 Chromosome conden 92.4 6.2 0.00014 49.5 18.4 102 1433-1566 94-195 (885)
175 PF10521 DUF2454: Protein of u 92.0 1.8 3.9E-05 51.9 13.6 140 71-210 111-275 (282)
176 smart00802 UME Domain in UVSB 91.9 0.92 2E-05 45.6 9.1 93 1129-1221 7-101 (107)
177 cd08050 TAF6 TATA Binding Prot 91.9 1.9 4.1E-05 53.1 13.9 131 1131-1273 176-324 (343)
178 PF08064 UME: UME (NUC010) dom 91.9 0.84 1.8E-05 46.1 8.9 95 1129-1223 7-103 (107)
179 PF04931 DNA_pol_phi: DNA poly 91.8 2.1 4.6E-05 58.9 15.7 34 157-190 587-620 (784)
180 KOG2149|consensus 91.7 1.6 3.5E-05 52.9 12.4 129 80-209 59-191 (393)
181 KOG2022|consensus 91.7 61 0.0013 43.4 40.4 153 51-210 480-642 (982)
182 smart00802 UME Domain in UVSB 91.6 1.8 3.9E-05 43.5 10.8 77 131-209 28-105 (107)
183 PF12074 DUF3554: Domain of un 91.2 14 0.0003 45.7 20.7 102 16-126 7-112 (339)
184 PF12719 Cnd3: Nuclear condens 91.2 6.3 0.00014 47.7 17.2 166 11-188 6-185 (298)
185 KOG2081|consensus 90.9 57 0.0012 41.7 31.5 236 79-377 199-459 (559)
186 cd00256 VATPase_H VATPase_H, r 90.8 55 0.0012 41.4 25.3 82 1418-1523 342-424 (429)
187 smart00638 LPD_N Lipoprotein N 90.8 13 0.00028 49.6 21.3 125 1317-1455 447-574 (574)
188 KOG2549|consensus 90.7 4.3 9.3E-05 51.0 14.9 155 279-493 205-369 (576)
189 KOG1517|consensus 90.6 7.4 0.00016 52.1 17.4 226 1234-1523 488-731 (1387)
190 PF01347 Vitellogenin_N: Lipop 90.6 8.5 0.00018 51.8 19.5 224 1085-1361 325-569 (618)
191 PF01347 Vitellogenin_N: Lipop 89.8 7.4 0.00016 52.4 18.0 165 1270-1455 447-618 (618)
192 KOG2137|consensus 89.7 3.4 7.4E-05 53.6 13.3 113 1429-1575 388-501 (700)
193 PF12530 DUF3730: Protein of u 89.7 35 0.00076 39.8 20.9 140 38-187 1-150 (234)
194 COG5116 RPN2 26S proteasome re 89.4 5.9 0.00013 49.4 14.4 77 258-360 600-676 (926)
195 PF08767 CRM1_C: CRM1 C termin 89.3 19 0.00041 44.0 19.2 151 300-497 42-197 (319)
196 KOG1293|consensus 89.1 84 0.0018 40.9 30.4 184 554-745 340-531 (678)
197 PF13001 Ecm29: Proteasome sta 88.7 6.7 0.00015 51.0 15.6 176 5-192 250-447 (501)
198 KOG2022|consensus 88.6 1E+02 0.0023 41.4 36.6 369 841-1290 448-870 (982)
199 PF13001 Ecm29: Proteasome sta 88.6 92 0.002 40.7 29.7 95 1080-1186 18-112 (501)
200 PF10363 DUF2435: Protein of u 88.3 3.3 7.1E-05 40.5 9.4 79 43-123 9-87 (92)
201 PF01603 B56: Protein phosphat 88.2 18 0.00038 45.9 18.4 197 3-209 144-345 (409)
202 KOG1789|consensus 88.1 1.1E+02 0.0025 41.5 24.7 163 1274-1457 1741-1921(2235)
203 KOG1293|consensus 87.7 1E+02 0.0022 40.2 26.7 145 1185-1346 388-534 (678)
204 KOG2149|consensus 87.7 4.3 9.4E-05 49.4 11.8 130 1039-1186 63-192 (393)
205 KOG0946|consensus 87.6 12 0.00025 49.0 15.7 57 258-314 136-195 (970)
206 KOG2137|consensus 87.4 14 0.00031 48.3 16.6 127 77-206 387-518 (700)
207 PF10363 DUF2435: Protein of u 87.4 2.8 6.2E-05 41.0 8.3 81 1433-1538 6-86 (92)
208 KOG2005|consensus 86.9 15 0.00033 47.1 15.9 47 1315-1361 674-720 (878)
209 KOG2160|consensus 86.7 20 0.00044 43.3 16.4 142 3-147 135-282 (342)
210 KOG0803|consensus 86.3 54 0.0012 46.8 22.5 206 79-316 41-265 (1312)
211 COG5116 RPN2 26S proteasome re 85.8 12 0.00025 47.0 13.9 107 1406-1543 562-672 (926)
212 KOG2160|consensus 85.0 14 0.00029 44.7 13.9 151 1139-1290 87-243 (342)
213 PF03224 V-ATPase_H_N: V-ATPas 85.0 13 0.00028 45.3 14.5 168 41-211 62-250 (312)
214 PF12054 DUF3535: Domain of un 84.8 1.3E+02 0.0028 38.6 24.6 197 8-214 103-368 (441)
215 PF11698 V-ATPase_H_C: V-ATPas 84.7 1.9 4.2E-05 43.9 5.8 73 36-108 42-115 (119)
216 COG5095 TAF6 Transcription ini 84.3 27 0.00058 40.7 15.0 155 115-312 195-357 (450)
217 PF12074 DUF3554: Domain of un 84.1 45 0.00098 41.2 18.9 103 63-168 8-112 (339)
218 PF12530 DUF3730: Protein of u 83.7 75 0.0016 37.0 19.3 148 121-315 4-152 (234)
219 KOG2062|consensus 83.5 1.7E+02 0.0036 38.8 49.7 158 1146-1339 530-690 (929)
220 KOG0803|consensus 83.3 32 0.0007 48.9 18.3 242 1004-1292 45-309 (1312)
221 PF08623 TIP120: TATA-binding 83.3 6.8 0.00015 42.7 9.6 99 92-192 40-151 (169)
222 PF12231 Rif1_N: Rap1-interact 82.6 1.4E+02 0.0031 37.4 25.0 213 1227-1460 4-243 (372)
223 PF14225 MOR2-PAG1_C: Cell mor 82.2 80 0.0017 37.4 18.8 139 1395-1571 110-255 (262)
224 KOG1949|consensus 81.8 16 0.00035 47.0 13.2 141 38-181 175-324 (1005)
225 cd08050 TAF6 TATA Binding Prot 80.9 12 0.00026 46.2 11.9 125 79-209 178-318 (343)
226 KOG1517|consensus 79.9 22 0.00047 48.1 13.8 103 6-111 571-674 (1387)
227 PF14228 MOR2-PAG1_mid: Cell m 79.9 2.8E+02 0.0061 39.6 25.4 35 585-619 541-575 (1120)
228 PF08767 CRM1_C: CRM1 C termin 79.7 58 0.0013 39.8 17.2 161 7-171 39-226 (319)
229 PF08389 Xpo1: Exportin 1-like 79.3 9 0.0002 40.7 9.1 112 94-209 3-135 (148)
230 KOG2122|consensus 79.1 2.2E+02 0.0047 40.7 22.6 75 562-666 528-602 (2195)
231 smart00638 LPD_N Lipoprotein N 79.0 22 0.00048 47.3 14.6 161 264-488 376-539 (574)
232 PF12333 Ipi1_N: Rix1 complex 78.8 4.9 0.00011 40.2 6.2 62 150-211 2-64 (102)
233 COG5110 RPN1 26S proteasome re 78.5 62 0.0013 40.8 16.2 47 1315-1361 675-721 (881)
234 KOG1837|consensus 78.1 3.5E+02 0.0076 39.2 27.6 230 833-1114 1365-1611(1621)
235 KOG4524|consensus 77.1 3E+02 0.0065 37.8 54.3 97 1082-1184 800-897 (1014)
236 PF14911 MMS22L_C: S-phase gen 76.0 2.1E+02 0.0046 35.6 23.4 240 79-400 69-350 (373)
237 PF12054 DUF3535: Domain of un 75.9 2.4E+02 0.0053 36.2 24.2 57 93-150 101-158 (441)
238 COG5098 Chromosome condensatio 75.8 2.7E+02 0.0058 36.6 33.4 101 833-938 912-1012(1128)
239 PF08569 Mo25: Mo25-like; Int 75.2 88 0.0019 38.5 16.7 158 285-493 76-237 (335)
240 PF12765 Cohesin_HEAT: HEAT re 74.1 4 8.6E-05 33.7 3.4 41 266-308 1-41 (42)
241 COG5098 Chromosome condensatio 74.0 2.9E+02 0.0064 36.3 45.2 145 994-1165 890-1038(1128)
242 PF09324 DUF1981: Domain of un 73.0 16 0.00034 35.4 7.8 67 118-184 18-84 (86)
243 PF14225 MOR2-PAG1_C: Cell mor 72.8 1.6E+02 0.0034 35.0 17.5 218 1003-1249 32-258 (262)
244 PF04931 DNA_pol_phi: DNA poly 72.6 47 0.001 46.0 15.4 34 115-149 587-620 (784)
245 PF05327 RRN3: RNA polymerase 72.4 2.5E+02 0.0054 37.3 21.4 94 58-152 52-159 (563)
246 PF14664 RICTOR_N: Rapamycin-i 72.3 89 0.0019 39.0 16.2 237 1431-1752 26-285 (371)
247 KOG1851|consensus 72.2 49 0.0011 47.0 14.6 149 1019-1187 1506-1661(1710)
248 PF14664 RICTOR_N: Rapamycin-i 71.9 2.5E+02 0.0055 35.1 20.0 219 1317-1574 26-273 (371)
249 KOG1566|consensus 71.7 1.5E+02 0.0032 35.6 16.3 76 285-375 79-154 (342)
250 KOG2011|consensus 71.0 4.4E+02 0.0096 37.0 23.3 211 54-312 171-397 (1048)
251 PF07571 DUF1546: Protein of u 70.2 15 0.00033 36.0 7.1 59 255-313 17-77 (92)
252 KOG3961|consensus 69.1 13 0.00028 41.4 6.8 90 1035-1138 115-204 (262)
253 PF11864 DUF3384: Domain of un 68.3 3.6E+02 0.0078 34.9 34.2 116 343-497 214-334 (464)
254 PF12397 U3snoRNP10: U3 small 67.6 76 0.0017 32.7 12.2 73 33-110 2-76 (121)
255 PF12231 Rif1_N: Rap1-interact 67.0 3.3E+02 0.0073 34.1 29.9 275 3-315 5-304 (372)
256 PF10193 Telomere_reg-2: Telom 66.7 28 0.00061 35.6 8.5 104 156-311 4-112 (114)
257 KOG3961|consensus 66.3 20 0.00043 39.9 7.5 88 1085-1181 114-204 (262)
258 PF12765 Cohesin_HEAT: HEAT re 66.3 9.3 0.0002 31.5 4.0 41 61-103 2-42 (42)
259 PF01603 B56: Protein phosphat 65.6 3.7E+02 0.0081 34.1 24.6 86 338-461 289-378 (409)
260 PF07571 DUF1546: Protein of u 65.4 20 0.00044 35.1 6.9 60 50-109 18-79 (92)
261 PF09324 DUF1981: Domain of un 65.4 26 0.00056 33.9 7.5 68 855-922 17-84 (86)
262 PF08569 Mo25: Mo25-like; Int 64.9 3.4E+02 0.0074 33.4 21.0 108 351-495 169-284 (335)
263 COG5234 CIN1 Beta-tubulin fold 64.4 4.6E+02 0.0099 34.7 22.1 73 848-927 680-759 (993)
264 cd03561 VHS VHS domain family; 63.4 1.1E+02 0.0024 32.1 12.6 94 50-151 16-116 (133)
265 PF08161 NUC173: NUC173 domain 62.8 77 0.0017 35.9 11.8 157 53-213 15-184 (198)
266 KOG2081|consensus 62.8 4.5E+02 0.0098 34.1 37.1 178 1170-1380 334-538 (559)
267 KOG1837|consensus 62.7 7.1E+02 0.015 36.4 25.8 101 260-384 1520-1620(1621)
268 PF04510 DUF577: Family of unk 62.6 45 0.00098 36.3 9.3 145 37-188 3-164 (174)
269 PF08146 BP28CT: BP28CT (NUC21 61.7 87 0.0019 33.9 11.6 76 94-169 36-118 (153)
270 KOG0890|consensus 61.6 2.4E+02 0.0052 42.5 18.4 38 1392-1429 1080-1117(2382)
271 PF11698 V-ATPase_H_C: V-ATPas 61.5 29 0.00063 35.6 7.3 70 118-188 44-115 (119)
272 cd00872 PI3Ka_I Phosphoinositi 61.1 1.5E+02 0.0032 32.8 13.3 79 36-128 38-116 (171)
273 PF04118 Dopey_N: Dopey, N-ter 61.0 2.2E+02 0.0048 34.6 15.9 178 1039-1240 59-249 (307)
274 PF12830 Nipped-B_C: Sister ch 60.7 2.8E+02 0.0061 31.0 17.7 82 33-120 4-86 (187)
275 PF03130 HEAT_PBS: PBS lyase H 60.5 12 0.00025 27.7 3.2 25 1332-1359 1-25 (27)
276 PF00514 Arm: Armadillo/beta-c 60.2 14 0.00031 30.0 4.1 29 1316-1344 12-40 (41)
277 KOG2153|consensus 59.8 2.4E+02 0.0053 36.9 16.3 124 532-665 216-353 (704)
278 PF10193 Telomere_reg-2: Telom 59.1 27 0.00059 35.7 6.8 78 118-198 4-89 (114)
279 PF08146 BP28CT: BP28CT (NUC21 59.1 74 0.0016 34.5 10.5 91 833-923 37-144 (153)
280 PF04388 Hamartin: Hamartin pr 59.1 1.3E+02 0.0027 40.8 14.9 154 40-211 7-163 (668)
281 cd03572 ENTH_epsin_related ENT 58.9 38 0.00082 35.1 7.7 85 343-453 35-119 (122)
282 PF00514 Arm: Armadillo/beta-c 58.0 16 0.00035 29.6 4.1 29 79-107 12-40 (41)
283 cd03569 VHS_Hrs_Vps27p VHS dom 57.0 1.3E+02 0.0029 32.1 11.8 94 50-151 20-118 (142)
284 KOG2005|consensus 57.0 2.6E+02 0.0057 36.6 15.8 79 1430-1538 640-718 (878)
285 KOG2213|consensus 56.6 4.7E+02 0.01 32.4 19.4 46 64-109 46-91 (460)
286 PF04388 Hamartin: Hamartin pr 56.3 1.3E+02 0.0028 40.8 14.2 92 75-168 66-161 (668)
287 PF05536 Neurochondrin: Neuroc 56.1 6.1E+02 0.013 33.5 38.1 186 132-379 71-265 (543)
288 PF08389 Xpo1: Exportin 1-like 55.6 80 0.0017 33.3 10.3 130 1412-1564 4-147 (148)
289 KOG2122|consensus 54.4 9.3E+02 0.02 35.1 24.2 36 1494-1529 529-564 (2195)
290 PF04118 Dopey_N: Dopey, N-ter 53.9 2.3E+02 0.0051 34.4 14.5 151 43-193 16-172 (307)
291 smart00288 VHS Domain present 53.6 1.1E+02 0.0024 32.2 10.5 73 78-150 36-114 (133)
292 PF05536 Neurochondrin: Neuroc 53.0 6.8E+02 0.015 33.1 38.0 85 1083-1169 182-266 (543)
293 PF12397 U3snoRNP10: U3 small 52.3 1.1E+02 0.0024 31.5 10.2 73 1213-1289 3-76 (121)
294 PF10350 DUF2428: Putative dea 50.5 2.5E+02 0.0054 33.2 14.0 159 52-210 61-250 (255)
295 PF10446 DUF2457: Protein of u 50.2 10 0.00022 46.7 2.3 9 257-265 124-132 (458)
296 PF08161 NUC173: NUC173 domain 48.8 1.6E+02 0.0035 33.3 11.5 68 1092-1168 7-74 (198)
297 PF12333 Ipi1_N: Rix1 complex 48.3 53 0.0011 32.9 6.7 62 338-399 3-65 (102)
298 cd03569 VHS_Hrs_Vps27p VHS dom 48.1 2E+02 0.0044 30.7 11.5 86 117-205 41-129 (142)
299 cd03568 VHS_STAM VHS domain fa 47.7 1.5E+02 0.0032 31.8 10.3 93 50-150 16-113 (144)
300 PF14868 DUF4487: Domain of un 47.4 8.1E+02 0.018 32.4 24.8 72 835-907 246-317 (559)
301 PF00790 VHS: VHS domain; Int 47.3 3.6E+02 0.0078 28.6 13.3 73 77-149 40-120 (140)
302 COG5234 CIN1 Beta-tubulin fold 46.0 1.6E+02 0.0034 38.7 11.5 230 1128-1361 241-509 (993)
303 KOG1848|consensus 45.8 1.2E+03 0.026 33.9 21.0 246 35-315 839-1133(1610)
304 smart00567 EZ_HEAT E-Z type HE 45.5 20 0.00043 27.0 2.5 29 258-296 1-29 (30)
305 KOG4199|consensus 45.3 6.5E+02 0.014 30.6 28.2 299 88-492 116-442 (461)
306 KOG2759|consensus 43.6 32 0.0007 42.3 5.1 73 36-108 365-438 (442)
307 PF14911 MMS22L_C: S-phase gen 43.4 7.6E+02 0.016 30.9 22.6 47 888-934 60-106 (373)
308 KOG1222|consensus 43.3 7.2E+02 0.016 31.5 16.0 183 17-204 485-687 (791)
309 KOG1851|consensus 43.2 1.4E+03 0.029 33.8 29.3 183 259-502 1502-1686(1710)
310 cd03568 VHS_STAM VHS domain fa 42.2 1E+02 0.0022 33.0 8.1 63 50-112 49-114 (144)
311 cd03572 ENTH_epsin_related ENT 41.5 1.5E+02 0.0033 30.8 8.8 75 849-924 32-117 (122)
312 PF10350 DUF2428: Putative dea 41.4 4.3E+02 0.0093 31.2 14.1 157 13-169 68-250 (255)
313 PF00613 PI3Ka: Phosphoinositi 41.1 2.4E+02 0.0052 31.6 11.2 135 36-194 44-180 (184)
314 KOG1848|consensus 40.7 8.8E+02 0.019 35.0 17.8 35 585-619 1101-1135(1610)
315 KOG3723|consensus 40.6 2.8E+02 0.0061 35.5 12.3 163 3-166 24-210 (851)
316 PF04147 Nop14: Nop14-like fam 40.5 4.1E+02 0.0088 37.2 15.6 31 365-396 541-571 (840)
317 PF12830 Nipped-B_C: Sister ch 40.2 68 0.0015 35.9 6.8 65 1396-1460 8-75 (187)
318 KOG3687|consensus 39.3 1.2E+03 0.027 32.2 18.1 67 52-121 444-515 (1697)
319 PF03224 V-ATPase_H_N: V-ATPas 36.7 2.9E+02 0.0063 33.6 12.2 168 4-177 117-303 (312)
320 cd03561 VHS VHS domain family; 35.9 1.1E+02 0.0025 32.1 7.3 76 1216-1291 37-116 (133)
321 KOG2140|consensus 35.8 4.5E+02 0.0098 33.6 12.9 23 86-108 245-267 (739)
322 PF06524 NOA36: NOA36 protein; 35.6 30 0.00065 39.4 2.9 9 139-147 93-101 (314)
323 cd03565 VHS_Tom1 VHS domain fa 35.6 5.7E+02 0.012 27.2 12.6 76 118-193 39-120 (141)
324 smart00288 VHS Domain present 35.0 1.5E+02 0.0033 31.2 8.1 69 42-111 42-114 (133)
325 KOG2213|consensus 33.9 1E+03 0.022 29.7 17.7 57 578-648 52-108 (460)
326 KOG2140|consensus 33.3 1.1E+03 0.025 30.3 15.7 115 34-156 235-352 (739)
327 PF12783 Sec7_N: Guanine nucle 32.6 2.6E+02 0.0057 30.5 9.9 112 1047-1165 35-147 (168)
328 cd03567 VHS_GGA VHS domain fam 32.3 3.6E+02 0.0079 28.7 10.3 93 50-150 17-119 (139)
329 cd03567 VHS_GGA VHS domain fam 31.9 3.3E+02 0.0071 29.0 9.9 75 1216-1290 38-119 (139)
330 COG5537 IRR1 Cohesin [Cell div 31.5 5.1E+02 0.011 33.9 12.6 108 81-188 277-386 (740)
331 COG5537 IRR1 Cohesin [Cell div 30.7 1.2E+03 0.025 30.8 15.5 98 259-376 290-387 (740)
332 PF12783 Sec7_N: Guanine nucle 29.5 6.4E+02 0.014 27.5 12.3 97 51-147 35-146 (168)
333 KOG2973|consensus 28.8 2.7E+02 0.0058 33.4 9.1 96 49-147 14-111 (353)
334 smart00185 ARM Armadillo/beta- 28.2 74 0.0016 25.2 3.5 28 80-107 13-40 (41)
335 cd03565 VHS_Tom1 VHS domain fa 27.1 2.9E+02 0.0064 29.4 8.6 73 858-930 41-119 (141)
336 cd00197 VHS_ENTH_ANTH VHS, ENT 27.1 5.3E+02 0.011 26.1 10.3 72 114-187 34-114 (115)
337 PF03542 Tuberin: Tuberin; In 26.6 9E+02 0.02 30.1 13.8 134 52-190 211-352 (356)
338 PF10446 DUF2457: Protein of u 26.3 37 0.00081 42.0 1.9 9 430-438 251-259 (458)
339 PF08713 DNA_alkylation: DNA a 25.7 4E+02 0.0087 30.1 10.3 70 1496-1576 121-190 (213)
340 KOG2973|consensus 25.5 2.9E+02 0.0062 33.2 8.6 86 81-171 5-94 (353)
341 PF11919 DUF3437: Domain of un 25.5 1.1E+02 0.0024 29.9 4.6 53 871-924 4-56 (90)
342 PF14961 BROMI: Broad-minded p 25.1 6.2E+02 0.013 36.0 12.7 129 40-170 164-316 (1296)
343 cd00197 VHS_ENTH_ANTH VHS, ENT 24.9 7.3E+02 0.016 25.1 11.1 71 76-146 34-114 (115)
344 PF11701 UNC45-central: Myosin 24.8 1.7E+02 0.0036 31.9 6.4 136 42-183 8-154 (157)
345 PF00790 VHS: VHS domain; Int 24.2 8.7E+02 0.019 25.7 13.3 76 116-192 41-122 (140)
346 smart00185 ARM Armadillo/beta- 23.5 95 0.002 24.6 3.3 28 1317-1344 13-40 (41)
347 PF12243 CTK3: CTD kinase subu 23.2 8.6E+02 0.019 26.0 11.0 102 82-190 11-121 (139)
348 PF07539 DRIM: Down-regulated 22.7 3.1E+02 0.0067 29.3 7.7 83 77-168 15-97 (141)
349 KOG2153|consensus 22.3 8.6E+02 0.019 32.2 12.5 72 134-207 301-373 (704)
350 PF07834 RanGAP1_C: RanGAP1 C- 20.1 2.3E+02 0.0049 31.5 6.1 72 1627-1698 78-161 (183)
No 1
>KOG1824|consensus
Probab=100.00 E-value=2.4e-181 Score=1624.57 Aligned_cols=1027 Identities=59% Similarity=0.945 Sum_probs=941.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhhCCCCCh-hhhhhHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhccCCCCchhH
Q psy14676 1 MVSDKEQLRDISSIGLKTVISELPLGSN-ALAANVCRRITGKLSTAIEKQEDVS-VQLEALDILSDLLSRFGALLPSFHF 78 (1827)
Q Consensus 1 ~~~~~~~~Rdi~~~~Lktvi~~lp~~~~-~~~~~v~~~L~P~Ll~~l~~~~~~~-v~~~al~iL~~l~~~~~~~l~~~~~ 78 (1827)
|+++|||.|||++++|||+|+++|+.++ .++++||+.++|+|.+++..+++.. ++.++||+|++++.+||..+.++|.
T Consensus 94 ~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~ 173 (1233)
T KOG1824|consen 94 MLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHL 173 (1233)
T ss_pred hccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHH
Confidence 7899999999999999999999997444 7888999999999999997655544 9999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE 158 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~ 158 (1827)
.++.+++++|++++..|||+|+.||++++.+++...+..++++++.+|.+.......|++++|+++++|+.|++|+.|++
T Consensus 174 ~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~ 253 (1233)
T KOG1824|consen 174 SILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLD 253 (1233)
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccc
Confidence 99999999999999999999999999999999999999999999999988777888999999999999999999999999
Q ss_pred HHHHHHHhhc---ccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCC
Q psy14676 159 RVMPLILKYS---REEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235 (1827)
Q Consensus 159 ~i~p~l~~~~---~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~ 235 (1827)
.++|++.+++ +.++||+||+|+||||.|+.+||+++.||.|.++.+|+.|++|||||+|+++||+ ++|..
T Consensus 254 ~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDe-------d~~~~ 326 (1233)
T KOG1824|consen 254 KIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDE-------DAMFL 326 (1233)
T ss_pred hhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccch-------hhhhh
Confidence 9999999999 7889999999999999999999999999999999999999999999998875432 12221
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q psy14676 236 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 236 ~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~ 315 (1827)
|| .||||.++||+||||+||||||+||||+.+++.++.+++..+|+.+.|.++.||+||||+||.+++.+|.+++++
T Consensus 327 ed---~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~q 403 (1233)
T KOG1824|consen 327 ED---EEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQ 403 (1233)
T ss_pred hc---cccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 11 223334689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCh--HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHH
Q psy14676 316 TRTFSPLTPSDPNQMDQEDSP--LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVT 393 (1827)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~ 393 (1827)
++....| ..+++.|++++.+ ..++..++|.||+++.++|++++.++|++||.+|.++..++||++++|++.++|+|.
T Consensus 404 t~~~~~~-~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~ 482 (1233)
T KOG1824|consen 404 TRPVIEV-LADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGII 482 (1233)
T ss_pred CCCCccc-ccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhh
Confidence 9876666 2345566664433 478999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHh
Q psy14676 394 SVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 473 (1827)
Q Consensus 394 ~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~ 473 (1827)
..+.|++.
T Consensus 483 ~~l~DkSs------------------------------------------------------------------------ 490 (1233)
T KOG1824|consen 483 YSLNDKSS------------------------------------------------------------------------ 490 (1233)
T ss_pred hhcCCccc------------------------------------------------------------------------
Confidence 88732100
Q ss_pred hcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHh
Q psy14676 474 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 553 (1827)
Q Consensus 474 ~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~ 553 (1827)
. .+
T Consensus 491 ----------------------------s-------------s~------------------------------------ 493 (1233)
T KOG1824|consen 491 ----------------------------S-------------SN------------------------------------ 493 (1233)
T ss_pred ----------------------------h-------------HH------------------------------------
Confidence 0 00
Q ss_pred hcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCccccccccc
Q psy14676 554 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPI 633 (1827)
Q Consensus 554 ~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~ 633 (1827)
+
T Consensus 494 ------------------------------------------------------------------------~------- 494 (1233)
T KOG1824|consen 494 ------------------------------------------------------------------------L------- 494 (1233)
T ss_pred ------------------------------------------------------------------------H-------
Confidence 0
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCcc
Q psy14676 634 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL 713 (1827)
Q Consensus 634 l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~ 713 (1827)
|.- ++
T Consensus 495 -------------------ki~------~L-------------------------------------------------- 499 (1233)
T KOG1824|consen 495 -------------------KID------AL-------------------------------------------------- 499 (1233)
T ss_pred -------------------HHH------HH--------------------------------------------------
Confidence 000 00
Q ss_pred chhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHH
Q psy14676 714 VEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAI 793 (1827)
Q Consensus 714 ~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~ 793 (1827)
.|.
T Consensus 500 ------------------------------~fl----------------------------------------------- 502 (1233)
T KOG1824|consen 500 ------------------------------VFL----------------------------------------------- 502 (1233)
T ss_pred ------------------------------HHH-----------------------------------------------
Confidence 000
Q ss_pred HhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhH
Q psy14676 794 TVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTN 873 (1827)
Q Consensus 794 ~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr 873 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1233)
T KOG1824|consen 503 -------------------------------------------------------------------------------- 502 (1233)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHH
Q psy14676 874 RTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQ 953 (1827)
Q Consensus 874 ~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~ 953 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1233)
T KOG1824|consen 503 -------------------------------------------------------------------------------- 502 (1233)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCC
Q psy14676 954 VILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS 1033 (1827)
Q Consensus 954 ~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~ 1033 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1233)
T KOG1824|consen 503 -------------------------------------------------------------------------------- 502 (1233)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
...+.+|.+..|+|| ++.+.|++..+++|+||+|++||+.++++++
T Consensus 503 ------------------------~~~L~s~~p~~fhp~----------~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lv 548 (1233)
T KOG1824|consen 503 ------------------------YSALISHPPEVFHPH----------LSALSPPVVAAVGDPFYKISAEALLVCQQLV 548 (1233)
T ss_pred ------------------------HHHHhcCChhhcccc----------hhhhhhHHHHHhcCchHhhhHHHHHHHHHHH
Confidence 001123344556777 8889999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHH
Q psy14676 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLT 1193 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~ 1193 (1827)
++++|...+.+.+..||+.++|...+.+|.++|.|+|||++||.|+|+++.++|+.++.+++.+||+|++|++||.||++
T Consensus 549 kvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~ 628 (1233)
T KOG1824|consen 549 KVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLT 628 (1233)
T ss_pred HHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHH
Confidence 99999876667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChh
Q psy14676 1194 TVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLH 1273 (1827)
Q Consensus 1194 av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~ 1273 (1827)
|+||++.|+.++..+++.|.+.++++++++|+||++|.+|.+++.++..|+++++..++.+.++.++.+++++++++|+|
T Consensus 629 AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlh 708 (1233)
T KOG1824|consen 629 AVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLH 708 (1233)
T ss_pred HHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccch---------------h-----h------------------------------------
Q psy14676 1274 IAQLTLTLLTSIAKIQPNALVE---------------P-----A------------------------------------ 1297 (1827)
Q Consensus 1274 l~~~al~~L~~l~~~~~~~~~~---------------~-----~------------------------------------ 1297 (1827)
+.+.++.+|+.++...|..... | +
T Consensus 709 vt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~ 788 (1233)
T KOG1824|consen 709 VTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQV 788 (1233)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccccc
Confidence 9999999999999987743322 0 0
Q ss_pred -----------H---------------------------------------HhhhhhcccccCCCchhhHHHHHHHhcCC
Q psy14676 1298 -----------A---------------------------------------ASILPQIGRHTDLTSVADLKQVILNAFTP 1327 (1827)
Q Consensus 1298 -----------i---------------------------------------~~~lgeiG~~~~~~~~~~l~~~~l~~~~~ 1327 (1827)
+ ...+||+|++.+++.++.+..+++++|++
T Consensus 789 ~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~s 868 (1233)
T KOG1824|consen 789 TDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNS 868 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCC
Confidence 0 01148999999988888999999999999
Q ss_pred CCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcC
Q psy14676 1328 TSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCEC 1407 (1827)
Q Consensus 1328 ~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~ 1407 (1827)
+++|||.||++|||++++||++.|||+|++++..++++||++||+|+|+|... + .+.++|+++.||+.|+++|++
T Consensus 869 p~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~--s---vd~~~~~v~~IW~lL~k~cE~ 943 (1233)
T KOG1824|consen 869 PSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSA--S---VDGLKPYVEKIWALLFKHCEC 943 (1233)
T ss_pred ChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHh--c---cchhhhhHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999853 3 457899999999999999999
Q ss_pred CchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccc
Q psy14676 1408 QEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIK 1487 (1827)
Q Consensus 1408 ~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~ 1487 (1827)
.+||+|+++|||||||+.++|+.++|+|+..+.++.+..|.++++|+||++++.++.+|+.++
T Consensus 944 ~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk----------------- 1006 (1233)
T KOG1824|consen 944 AEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK----------------- 1006 (1233)
T ss_pred chhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhh
Q psy14676 1488 LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCL 1567 (1827)
Q Consensus 1488 ~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s 1567 (1827)
+-+..|+.+++|||+ +|||+|+++|||
T Consensus 1007 -------~~ig~fl~~~~dpDl----------------------------------------------~VrrvaLvv~nS 1033 (1233)
T KOG1824|consen 1007 -------QQIGDFLKLLRDPDL----------------------------------------------EVRRVALVVLNS 1033 (1233)
T ss_pred -------HHHHHHHHHHhCCch----------------------------------------------hHHHHHHHHHHH
Confidence 566999999999999 999999999999
Q ss_pred hhccCCCCcccchhhhhhhhcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhh
Q psy14676 1568 GDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTC 1647 (1827)
Q Consensus 1568 ~a~~~p~li~~~~~~~~~~~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~ 1647 (1827)
++||||++| |++|+.++|.+| .||+||+||||||+||||||+|||||++||+||||||||||+|
T Consensus 1034 aahNKpslI--------rDllpeLLp~Ly--------~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1034 AAHNKPSLI--------RDLLPELLPLLY--------SETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC 1097 (1233)
T ss_pred HHccCHhHH--------HHHHHHHHHHHH--------HhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999 9999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHhhccchhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHH
Q psy14676 1648 LDRVDMFEFLNHLESGLRDHYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSA 1727 (1827)
Q Consensus 1648 ~~~~~~~~~~~~~~~gl~d~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~ 1727 (1827)
++++|+.+|+++++.||.|||||||+||+||.||+..||+.|++|+|+++||||+||+.|+|+|+||||+||++|++|||
T Consensus 1098 ld~~dit~Fl~~~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSA 1177 (1233)
T KOG1824|consen 1098 LDRLDITEFLNHVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSA 1177 (1233)
T ss_pred hhhccHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCChhHHHHHHHHhCCchHHHHHHHHhcccCCCCCCCCccccCC
Q psy14676 1728 MRAVAALLTIQDADKNPALNDFVATIKNSPELQTIFDSMQKDSSLSNQQDPHMMDMN 1784 (1827)
Q Consensus 1728 ~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1784 (1827)
||++.+|.+||++++||+|.+|..+|+++|+|..+|+.|+||+.++. .+.+.||++
T Consensus 1178 lRav~~L~~ip~v~~np~~~df~sqik~~pel~~~fe~I~kes~t~~-~~~~~m~~s 1233 (1233)
T KOG1824|consen 1178 LRAVAALLTIPEVEKNPQFSDFESQIKSNPELAAIFESIQKESKTTI-KTLESMDTS 1233 (1233)
T ss_pred HHHHHHHhcccccccChHHHHHHHHhhcChhHHHHHHHHHHHhhccc-cccccccCC
Confidence 99999999999999999999999999999999999999999998853 245789874
No 2
>KOG1824|consensus
Probab=100.00 E-value=4e-49 Score=478.60 Aligned_cols=880 Identities=28% Similarity=0.457 Sum_probs=645.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q psy14676 5 KEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTAL 84 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~l 84 (1827)
.+-+|.=+..||.-+....|.. ...+++-.|+.++.+..........+.+|+.++..-|.-++.|.+.+.+.+
T Consensus 187 R~aVrKkai~~l~~la~~~~~~-------ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v 259 (1233)
T KOG1824|consen 187 RLAVRKKAITALGHLASSCNRD-------LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLV 259 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHH
Confidence 3456777777877777777664 478888999999976666666678899999999999999988889999999
Q ss_pred hhhc---CCCCHHHHHHHHHHHHHHHHhhchhHH---HHHHHHHHHhcc----------C--------------------
Q psy14676 85 LPQL---SSPRQAVRKRTIVALSHLVMSCNLQLY---TKLIDFLLEGLT----------T-------------------- 128 (1827)
Q Consensus 85 l~~L---~~~~~~VRk~Ai~aL~~l~~~~~~~~~---~~l~~~ll~~L~----------~-------------------- 128 (1827)
.+.. +..+...|+..++|++.|...|+.+.. ..++..+++.+. +
T Consensus 260 ~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYs 339 (1233)
T KOG1824|consen 260 ADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYS 339 (1233)
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccc
Confidence 9998 445679999999999999999998753 334444444431 0
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHH
Q psy14676 129 ---NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELC 205 (1827)
Q Consensus 129 ---~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~l 205 (1827)
+-++.+||++..|+.++..+..+.+-..+..+-|.++.-+++..+.++--.+.++..+.+..+.
T Consensus 340 DDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~------------- 406 (1233)
T KOG1824|consen 340 DDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP------------- 406 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-------------
Confidence 0124699999999999999998888888899999999888876666653333333333322211
Q ss_pred HHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHh
Q psy14676 206 LTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRL 285 (1827)
Q Consensus 206 l~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~ 285 (1827)
-.+.++ |.| .|+.. +--+ ..|-.++.. ..
T Consensus 407 -----~~~~~~--d~d----------~~e~~-----------g~~s----~~~~L~~~~-------------------~~ 435 (1233)
T KOG1824|consen 407 -----VIEVLA--DND----------AMEQG-----------GTPS----DLSMLSDQV-------------------PL 435 (1233)
T ss_pred -----Cccccc--Cch----------hhhcc-----------CCcc----chHHHHhhh-------------------HH
Confidence 011111 111 11110 0000 012222211 12
Q ss_pred hhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHH
Q psy14676 286 VSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQD 365 (1827)
Q Consensus 286 v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a 365 (1827)
++..+...+++..-.-|...+.-+.+++.. .+..+.++++.++|.+...|.|++..--
T Consensus 436 iVkai~~qlr~ks~kt~~~cf~lL~eli~~--------------------lp~~l~~~~~slvpgI~~~l~DkSsss~-- 493 (1233)
T KOG1824|consen 436 IVKAIQKQLREKSVKTRQGCFLLLTELINV--------------------LPGALAQHIPSLVPGIIYSLNDKSSSSN-- 493 (1233)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHh--------------------CcchhhhcccccchhhhhhcCCccchHH--
Confidence 222333333332223455666666666632 1235678899999999999999863210
Q ss_pred HHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHH
Q psy14676 366 CLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAA 445 (1827)
Q Consensus 366 ~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~ 445 (1827)
.+..++
T Consensus 494 --------------------------------------------------------------------------~ki~~L 499 (1233)
T KOG1824|consen 494 --------------------------------------------------------------------------LKIDAL 499 (1233)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 122344
Q ss_pred HHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchh
Q psy14676 446 KCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQV 524 (1827)
Q Consensus 446 ~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~ 524 (1827)
.++......++ +.|.|+++.+.|++..+.+|.++.|-.+|+.++++++++.. |..+. +....++ .+....
T Consensus 500 ~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir---pl~~~----~~~d~~~--~v~~m~ 570 (1233)
T KOG1824|consen 500 VFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR---PLQPP----SSFDASP--YVKTMY 570 (1233)
T ss_pred HHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc---ccCCC----ccCCCCh--hHHHHH
Confidence 55555555566 89999999999999999999999999999999999999876 34221 1111122 245556
Q ss_pred hHHHHHHHHHhhhhhhhhHH-hHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhH
Q psy14676 525 PSLVKALQCQLREKSIRTRQ-DCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEV 603 (1827)
Q Consensus 525 ~~~~~~l~~~l~~~~~~~~~-~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV 603 (1827)
.++++++.....|..+|.+. .|++.+...++|... .-.+.+++.+..-++....
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~-----------------------~eL~~~L~il~eRl~nEiT-- 625 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLG-----------------------NELPRTLPILLERLGNEIT-- 625 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhh-----------------------hhhHHHHHHHHHHHhchhH--
Confidence 67777777777777777666 677766655555322 2335566666665654332
Q ss_pred HHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHh
Q psy14676 604 QNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVEL 683 (1827)
Q Consensus 604 ~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~ 683 (1827)
. + ..+|+++.|+.+|+.+|+++.+.+++|++.+++||++|.+|++++++++.++.+|+.+++..+++.|+.++
T Consensus 626 -R-----l-~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el 698 (1233)
T KOG1824|consen 626 -R-----L-TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVEL 698 (1233)
T ss_pred -H-----H-HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHh
Confidence 1 1 24578888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHH
Q psy14676 684 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELL 763 (1827)
Q Consensus 684 ~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll 763 (1827)
|.+++++|.|+++.|+.+++..+..+|...+. ..+.+++.++.+++||+.||+++.+++.||.++|.+..+..+|..++
T Consensus 699 ~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~-~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~ 777 (1233)
T KOG1824|consen 699 PPLISESDLHVTQLAVAFLTTLAIIQPSSLLK-ISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLL 777 (1233)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcccHHHHH-HhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 99999999999999999999999888875544 77899999999999999999999999999999999988887899999
Q ss_pred HHhhccccccc--hhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHH
Q psy14676 764 NMLIAPVMTGT--ALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVAL 841 (1827)
Q Consensus 764 ~~L~~~~~~~~--~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL 841 (1827)
+.+..|+..+. .+||||++++++|++.+|.....++.+.+.++++++.+ +.+
T Consensus 778 s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s------------------------ 831 (1233)
T KOG1824|consen 778 SLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKS------------------------ 831 (1233)
T ss_pred HHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCC------------------------
Confidence 99999997644 49999999999999999999998888888888888775 111
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHH
Q psy14676 842 SHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQAC 921 (1827)
Q Consensus 842 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Al 921 (1827)
++.+|-+|+-.
T Consensus 832 --------------------------------------------------------------------~~~ikvfa~Ls- 842 (1233)
T KOG1824|consen 832 --------------------------------------------------------------------SDSIKVFALLS- 842 (1233)
T ss_pred --------------------------------------------------------------------chhHHHHHHhh-
Confidence 11122222111
Q ss_pred HHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhH----------------------
Q psy14676 922 EAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAE---------------------- 979 (1827)
Q Consensus 922 e~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~---------------------- 979 (1827)
+++++++.+.++..++..++++.|+..+|++|.+|++++|+...
T Consensus 843 --------------lGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Qy 908 (1233)
T KOG1824|consen 843 --------------LGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQY 908 (1233)
T ss_pred --------------hhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHH
Confidence 67778888888788888889999999999999999999987542
Q ss_pred --------hhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhH
Q psy14676 980 --------IISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR 1051 (1827)
Q Consensus 980 --------~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R 1051 (1827)
.++|. ..+.+.++.+.+|..|++++++.|+++|++++||||+|+...|+.++|.+...+.++.+.+|
T Consensus 909 LLLhSlkevi~~~-----svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~r 983 (1233)
T KOG1824|consen 909 LLLHSLKEVIVSA-----SVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTR 983 (1233)
T ss_pred HHHHHHHHHHHHh-----ccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchh
Confidence 12233 23467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH
Q psy14676 1052 TTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT 1131 (1827)
Q Consensus 1052 ~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l 1131 (1827)
..+++++++..+..+..+.++ +.+-+..++.+
T Consensus 984 s~vvsavKfsisd~p~~id~~----------lk~~ig~fl~~-------------------------------------- 1015 (1233)
T KOG1824|consen 984 SSVVSAVKFSISDQPQPIDPL----------LKQQIGDFLKL-------------------------------------- 1015 (1233)
T ss_pred hhhhheeeeeecCCCCccCHH----------HHHHHHHHHHH--------------------------------------
Confidence 999998887777666666555 33333333333
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccc
Q psy14676 1132 SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLR 1211 (1827)
Q Consensus 1132 ~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~ 1211 (1827)
+. |.|.+||+.|+.++...+++-+..+.+-++++||.+.+.-+ .|..-+| .++..
T Consensus 1016 ----------~~--dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTk---vrkelIr----------eVeMG 1070 (1233)
T KOG1824|consen 1016 ----------LR--DPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETK---VRKELIR----------EVEMG 1070 (1233)
T ss_pred ----------Hh--CCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhh---hhHhhhh----------hhccc
Confidence 33 66667777777777777766666666667777777764311 1433333 24456
Q ss_pred hhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1212 PILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1212 p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
||-+.+ |+.-.+|+++++|+.+|+...-+.++. ...+..+...+.|. ..++...+.+|..++.-+|.
T Consensus 1071 PFKH~V---------DdgLd~RKaaFEcmytLLdscld~~di---t~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs 1137 (1233)
T KOG1824|consen 1071 PFKHTV---------DDGLDLRKAAFECMYTLLDSCLDRLDI---TEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPS 1137 (1233)
T ss_pred Cccccc---------cchHHHHHHHHHHHHHHHHhhhhhccH---HHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcH
Confidence 665432 344578999999999999986665553 33455556778877 77888899999999988886
Q ss_pred cc
Q psy14676 1292 AL 1293 (1827)
Q Consensus 1292 ~~ 1293 (1827)
.+
T Consensus 1138 ~V 1139 (1233)
T KOG1824|consen 1138 AV 1139 (1233)
T ss_pred HH
Confidence 43
No 3
>KOG2023|consensus
Probab=100.00 E-value=1.1e-49 Score=469.21 Aligned_cols=793 Identities=18% Similarity=0.230 Sum_probs=578.2
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14676 583 DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDT 662 (1827)
Q Consensus 583 ~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~ 662 (1827)
+...++..+|..++ .+++++|+.+...+-.+- . --||-.|| +=+|..+-.+.....-.++|.++|+
T Consensus 10 ~~l~ql~~lLk~s~-Spn~~~~~~~~~~leq~~----~------~pdfnnYL---~~IL~~~~~~d~~~Rs~aGLlLKNn 75 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQ-SPNSETRNNVQEKLEQFN----L------FPDFNNYL---IYILIRAKSEDVPTRSLAGLLLKNN 75 (885)
T ss_pred HHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHh----c------ccchhcee---eEEEecccccchhHHHHhhhhHhcc
Confidence 34445555544444 467888988777554431 1 13444555 6677777666666777889999999
Q ss_pred HHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccc--cchhhhh
Q psy14676 663 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPL--LQGAALT 740 (1827)
Q Consensus 663 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~--~~~~al~ 740 (1827)
+..+|. .+++....+++.+..+.++|+++.|+++.+.++++|+... .. ..|++++|.+.++++|+. .+++|+.
T Consensus 76 vr~~~~-~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~---~~-~~wpelLp~L~~~L~s~d~n~~EgA~~ 150 (885)
T KOG2023|consen 76 VRGHYN-SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTG---GL-QHWPELLPQLCELLDSPDYNTCEGAFG 150 (885)
T ss_pred cccccc-CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccc---cc-ccchhHHHHHHHHhcCCcccccchhHH
Confidence 988877 4677899999999999999999999999999999988632 22 379999999999998777 4689999
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhH
Q psy14676 741 SMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQV 820 (1827)
Q Consensus 741 ~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~ 820 (1827)
+|.+++ ++..+.++.-.. .++....++++++++++.. ++
T Consensus 151 AL~KIc----------EDsa~~lds~~~---------------------------~rpl~~mipkfl~f~~h~s---pk- 189 (885)
T KOG2023|consen 151 ALQKIC----------EDSAQFLDSDVL---------------------------TRPLNIMIPKFLQFFKHPS---PK- 189 (885)
T ss_pred HHHHHH----------hhhHHHHhhhcc---------------------------cCchHHhHHHHHHHHhCCC---hh-
Confidence 999985 556666644220 1122234568999998732 22
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHh--hhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhh
Q psy14676 821 TIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLE--GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERV 898 (1827)
Q Consensus 821 ~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~--~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~i 898 (1827)
+|+-|+.|+++++..-++.++.++..++.. .+.+|.++.||+.+|.+++.|-++-++++.||++.|
T Consensus 190 ------------iRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~I 257 (885)
T KOG2023|consen 190 ------------IRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNI 257 (885)
T ss_pred ------------HHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHH
Confidence 999999999999999999999999999888 467899999999999999999999999999999999
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhhC-----CCcccccccccccc----CCcchhhhhHHHHHh------hcCCCh
Q psy14676 899 MPLILKYSREEDDELREFCLQACEAFVQRC-----PKEITPHIQSIGRH----TDLTSVADLKQVILN------AFTPTS 963 (1827)
Q Consensus 899 lP~ll~~l~d~~~~vre~al~Ale~~v~~~-----~~~i~p~l~~i~~~----~~~s~~~~L~~~l~~------~~~~~~ 963 (1827)
+.++++..+|.|++| |++|||+|...+ +..+.||++.+++. +.|+ +...+|++ ...+++
T Consensus 258 veyML~~tqd~dE~V---ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ys---d~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 258 VEYMLQRTQDVDENV---ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYS---DDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred HHHHHHHccCcchhH---HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccc---cccHHHhcCccccccCCchh
Confidence 999999999999985 899999999864 45588999887762 2222 11122222 122356
Q ss_pred HhHhhh--hhccc--ch------------hh--Hhhhhc--ccccchhhhhhhhHH-HHHHHHHhhhhccccchhhHHHH
Q psy14676 964 EEVKSA--ASYTL--GS------------IA--EIISWQ--STSTSGVAQLQQFVP-AIWAQLFLHCECQEEGTRNVVAE 1022 (1827)
Q Consensus 964 e~~r~~--~~~~l--g~------------~~--~~i~Wk--~~~~~~~~~l~~~~p-~ll~~L~~~l~~~e~~vR~~a~e 1022 (1827)
|++|.. +++.- |. ++ ....|+ +|++.+++.+..+++ .++
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-------------------- 391 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-------------------- 391 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH--------------------
Confidence 666652 22221 11 01 113476 677777777777775 333
Q ss_pred HHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhH
Q psy14676 1023 CLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKIT 1102 (1827)
Q Consensus 1023 ~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~ 1102 (1827)
+.++|.|.+.|.+..|..|++++.+||+++.++.+++-|| ++.|+|.+++++.|.++-||
T Consensus 392 ----------~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~----------LpeLip~l~~~L~DKkplVR 451 (885)
T KOG2023|consen 392 ----------PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH----------LPELIPFLLSLLDDKKPLVR 451 (885)
T ss_pred ----------HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc----------hHHHHHHHHHHhccCcccee
Confidence 3457899999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH
Q psy14676 1103 AEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILL 1182 (1827)
Q Consensus 1103 ~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll 1182 (1827)
+-.+++++.+.+++-. ..-..|+.+++..++.++. |.+..|+|+|++++..+.+.+|..+.||+..+|..|+
T Consensus 452 sITCWTLsRys~wv~~------~~~~~~f~pvL~~ll~~ll--D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 452 SITCWTLSRYSKWVVQ------DSRDEYFKPVLEGLLRRLL--DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLV 523 (885)
T ss_pred eeeeeeHhhhhhhHhc------CChHhhhHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 9999999999988642 2234688999999999998 8899999999999999999999999999988887774
Q ss_pred HhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcCh-HhHHHHHH
Q psy14676 1183 DRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIST-EMLNKVTV 1261 (1827)
Q Consensus 1183 ~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~-~~~~~ll~ 1261 (1827)
. .+..+.+||- ..-++|+++|+.++|..++. .+++-++|
T Consensus 524 ~------------------------------------af~kYQ~KNL----lILYDAIgtlAdsvg~~Ln~~~YiqiLmP 563 (885)
T KOG2023|consen 524 F------------------------------------AFGKYQKKNL----LILYDAIGTLADSVGHALNKPAYIQILMP 563 (885)
T ss_pred H------------------------------------HHHHHhhcce----ehHHHHHHHHHHHHHHhcCcHHHHHHhcc
Confidence 2 2334445554 35688999999999988865 57888998
Q ss_pred Hhh---hhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHH
Q psy14676 1262 ELA---PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 1338 (1827)
Q Consensus 1262 ~L~---~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~ 1338 (1827)
.|. .+++|+|.++.++ ++||+.++...... +.|-..|++-.||.
T Consensus 564 PLi~KW~~lsd~DKdLfPL-LEClSsia~AL~~g--------------------F~P~~~~Vy~Rc~~------------ 610 (885)
T KOG2023|consen 564 PLIEKWELLSDSDKDLFPL-LECLSSIASALGVG--------------------FLPYAQPVYQRCFR------------ 610 (885)
T ss_pred HHHHHHHhcCcccchHHHH-HHHHHHHHHHHhcc--------------------ccccCHHHHHHHHH------------
Confidence 886 5889999988887 88888777632211 22333344444442
Q ss_pred HHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHH
Q psy14676 1339 TLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAE 1418 (1827)
Q Consensus 1339 aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAe 1418 (1827)
|++ +++..... ... .... . -.+ |+
T Consensus 611 ----------------il~-------------~t~q~~~~-~~~----~~~~------------~---~pd---kd---- 634 (885)
T KOG2023|consen 611 ----------------ILQ-------------KTLQLLAK-VQQ----DPTV------------E---APD---KD---- 634 (885)
T ss_pred ----------------HHH-------------HHHHHHHh-ccC----Cccc------------c---CCC---cc----
Confidence 111 11111100 000 0000 0 000 00
Q ss_pred HHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHH
Q psy14676 1419 CLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVK 1498 (1827)
Q Consensus 1419 cLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~ 1498 (1827)
++ .+++.-+..+...-+..+++.+ ..+.+..
T Consensus 635 ------------fi---------------I~sLDL~SGLaegLg~~ie~Lv----------------------a~snl~~ 665 (885)
T KOG2023|consen 635 ------------FI---------------IVSLDLLSGLAEGLGSHIEPLV----------------------AQSNLLD 665 (885)
T ss_pred ------------eE---------------EEeHHHHhHHHHHhhhchHHHh----------------------hhccHHH
Confidence 00 0001111111111111222222 1245778
Q ss_pred HHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCccc
Q psy14676 1499 MLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKI 1578 (1827)
Q Consensus 1499 ~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~ 1578 (1827)
.++.+++|+.|+||+++.+-||.+++.- ++.|
T Consensus 666 lll~C~~D~~peVRQS~FALLGDltk~c----------------------------------------------~~~v-- 697 (885)
T KOG2023|consen 666 LLLQCLQDEVPEVRQSAFALLGDLTKAC----------------------------------------------FEHV-- 697 (885)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHH----------------------------------------------HHhc--
Confidence 9999999999999999999999998621 2334
Q ss_pred chhhhhhhhcccCCccccccc----ccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCChH
Q psy14676 1579 DTLAFTHTLLTTHPPAVFHPH----IHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMF 1654 (1827)
Q Consensus 1579 ~~~~~~~~~l~~llp~l~~~~----~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~~~ 1654 (1827)
+|.+..++|.+.+|. +.+|++.+|.. .|+.| --|.++. ..+.
T Consensus 698 ------~p~~~~fl~~lg~Nl~~~~isv~nNA~WAi----Geia~-------k~g~~~~-----------------~~v~ 743 (885)
T KOG2023|consen 698 ------IPNLADFLPILGANLNPENISVCNNAIWAI----GEIAL-------KMGLKMK-----------------QYVS 743 (885)
T ss_pred ------cchHHHHHHHHhhcCChhhchHHHHHHHHH----HHHHH-------Hhchhhh-----------------hHHH
Confidence 566667777666555 55677778765 44322 1122322 2256
Q ss_pred HHHHHHHhhccchhhHHHH---HHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHH
Q psy14676 1655 EFLNHLESGLRDHYDIKML---TYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAV 1731 (1827)
Q Consensus 1655 ~~~~~~~~gl~d~~dik~l---~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~ 1731 (1827)
.++..++..++..+.-+.+ +..+++||+.+||..++++++++..||+..|+ .+++| |.|.||+|++
T Consensus 744 ~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~-~i~Dn----------eEK~sAFrG~ 812 (885)
T KOG2023|consen 744 PVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLR-NIDDN----------EEKESAFRGL 812 (885)
T ss_pred HHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhc-ccccc----------hhHHHHHHHH
Confidence 6677777777776655555 89999999999999999999999999999998 69999 9999999999
Q ss_pred HHHhcccCCCCChhHHHHHHHHhC----CchHHHHHHHHhcccCC
Q psy14676 1732 AALLTIQDADKNPALNDFVATIKN----SPELQTIFDSMQKDSSL 1772 (1827)
Q Consensus 1732 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1772 (1827)
|.+.++++.+....|..||+.|.. +.+++.+|.+|..++..
T Consensus 813 c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~ 857 (885)
T KOG2023|consen 813 CNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKN 857 (885)
T ss_pred HHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999983 46799999999998865
No 4
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=100.00 E-value=2.8e-50 Score=422.68 Aligned_cols=164 Identities=55% Similarity=0.883 Sum_probs=150.4
Q ss_pred hhhcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCChHHHHHHHHhhc
Q psy14676 1585 HTLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGL 1664 (1827)
Q Consensus 1585 ~~~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~~~~~~~~~~~gl 1664 (1827)
+|+|+.++|.|| .||.+||||||+|+||||||+||||||+||+|||||||||++|.+++|+.+|+++++.||
T Consensus 4 ~~~L~~llP~ly--------~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL 75 (169)
T PF08623_consen 4 RPHLDQLLPNLY--------AETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL 75 (169)
T ss_dssp TTTHHHHHHHHH--------HTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--------HHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHH-hcccCCCCC
Q psy14676 1665 RDHYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAAL-LTIQDADKN 1743 (1827)
Q Consensus 1665 ~d~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~~~l-~~~~~~~~~ 1743 (1827)
+|++|||+|||+||.||+.++|.++.++||++++||+++|++|+|++|||||+||++|++||++|++.+| .++++++.+
T Consensus 76 ~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~ 155 (169)
T PF08623_consen 76 KDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESS 155 (169)
T ss_dssp SS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSS
T ss_pred CCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred h-hHHHHHHHHhCC
Q psy14676 1744 P-ALNDFVATIKNS 1756 (1827)
Q Consensus 1744 ~-~~~~~~~~~~~~ 1756 (1827)
| +|.+|++.|++|
T Consensus 156 ~~~~~~f~~~i~~~ 169 (169)
T PF08623_consen 156 PNKWNEFVEWIKKN 169 (169)
T ss_dssp H-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcC
Confidence 9 999999999864
No 5
>KOG2171|consensus
Probab=100.00 E-value=5.6e-39 Score=406.34 Aligned_cols=814 Identities=17% Similarity=0.233 Sum_probs=548.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc--h
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN--L 112 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~--~ 112 (1827)
+++|+|.|.+...++ ++..|+.|+.+|..+.+.||..+.+|+..++..+.++|++++..||-.|++|++.++.+++ .
T Consensus 116 WPell~~L~q~~~S~-~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 116 WPELLQFLFQSTKSP-NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred hHHHHHHHHHHhcCC-CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 788999999998764 8999999999999999999999999999999999999999876699999999999999995 2
Q ss_pred h---HHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc--CchHHHHHHHHHHH
Q psy14676 113 Q---LYTKLIDFLLEGLT---TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE--EDDELREFCLQACE 184 (1827)
Q Consensus 113 ~---~~~~l~~~ll~~L~---~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~--~~delRe~al~ale 184 (1827)
. .|..+++.++..+. +.++.+....++.+|..++++.|+.++||+.+|+.+.+++..+ -++++|..|++.+-
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 2 45667787777763 3455667899999999999999999999999999999999865 37899999999999
Q ss_pred HHHHhCCC---ccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 185 AFVQRCPK---EITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 185 ~~~~~~p~---e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
++++..|. ...+|.+.+++.++..|.. .++|++|. ++| | .|+|+++ ..-
T Consensus 275 s~~e~Ap~~~k~~~~~~~~lv~~~l~~mte-----~~~D~ew~------------~~d--~--~ded~~~-------~~~ 326 (1075)
T KOG2171|consen 275 SLSEYAPAMCKKLALLGHTLVPVLLAMMTE-----EEDDDEWS------------NED--D--LDEDDEE-------TPY 326 (1075)
T ss_pred HHHHhhHHHhhhchhhhccHHHHHHHhcCC-----cccchhhc------------ccc--c--ccccccc-------CcH
Confidence 99888764 3457899999999998854 12223331 000 0 0011111 234
Q ss_pred HHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHH
Q psy14676 262 RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLS 341 (1827)
Q Consensus 262 raAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 341 (1827)
+.|.++|+.++.+.|+ ..+++.+++++...+.+.+|..|++++.|++.+. +||.+.+.
T Consensus 327 ~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~--------------------EGc~~~m~ 384 (1075)
T KOG2171|consen 327 RAAEQALDRLALHLGG--KQVLPPLFEALEAMLQSTEWKERHAALLALSVIA--------------------EGCSDVMI 384 (1075)
T ss_pred HHHHHHHHHHHhcCCh--hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--------------------cccHHHHH
Confidence 6799999999999885 2457778888889999999999999999999887 78889999
Q ss_pred hhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCC
Q psy14676 342 TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL-APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDG 420 (1827)
Q Consensus 342 ~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~ 420 (1827)
..+|+|++.++++|+|++|+||++|+..++++...++..+ ..|+..+.|++...+.
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld----------------------- 441 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD----------------------- 441 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc-----------------------
Confidence 9999999999999999999999999999999999998877 4566677778888862
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccC
Q psy14676 421 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 499 (1827)
Q Consensus 421 ~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~ 499 (1827)
+..+-||+.+|+.++-++.+... +.+.||++.++...+..+
T Consensus 442 -------------~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L------------------------- 483 (1075)
T KOG2171|consen 442 -------------STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLL------------------------- 483 (1075)
T ss_pred -------------ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 22356899999999888886665 788888887765322221
Q ss_pred CCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccc
Q psy14676 500 SPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIK 579 (1827)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~ 579 (1827)
T Consensus 484 -------------------------------------------------------------------------------- 483 (1075)
T KOG2171|consen 484 -------------------------------------------------------------------------------- 483 (1075)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHH
Q psy14676 580 LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 659 (1827)
Q Consensus 580 ~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~ 659 (1827)
++.....||..++++||..+.+-+. .|.||.+-++|.|..+|+..+.
T Consensus 484 ----------------~~~~~~~v~e~vvtaIasvA~AA~~--------~F~pY~d~~Mp~L~~~L~n~~~--------- 530 (1075)
T KOG2171|consen 484 ----------------LQSSKPYVQEQAVTAIASVADAAQE--------KFIPYFDRLMPLLKNFLQNADD--------- 530 (1075)
T ss_pred ----------------hcCCchhHHHHHHHHHHHHHHHHhh--------hhHhHHHHHHHHHHHHHhCCCc---------
Confidence 1223345666666666655544332 2233333333333222222110
Q ss_pred HHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhh
Q psy14676 660 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAAL 739 (1827)
Q Consensus 660 l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al 739 (1827)
T Consensus 531 -------------------------------------------------------------------------------- 530 (1075)
T KOG2171|consen 531 -------------------------------------------------------------------------------- 530 (1075)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchh
Q psy14676 740 TSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQ 819 (1827)
Q Consensus 740 ~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~ 819 (1827)
. .+
T Consensus 531 ---------------------------------------------------------~-----------d~--------- 533 (1075)
T KOG2171|consen 531 ---------------------------------------------------------K-----------DL--------- 533 (1075)
T ss_pred ---------------------------------------------------------h-----------hh---------
Confidence 0 00
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhh---cC---CCChhhHHHHHHHHHHHHHhccccchh
Q psy14676 820 VTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGL---TT---NKSTSTNRTYIQCFAAICRQAGHRFAE 893 (1827)
Q Consensus 820 ~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l---~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~ 893 (1827)
.-+|++.+.|++.+...++.+.|.++...++..+ +. +.+...|...++.|+.+|+.+|+.|.|
T Consensus 534 -----------r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p 602 (1075)
T KOG2171|consen 534 -----------RELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAP 602 (1075)
T ss_pred -----------HHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHh
Confidence 0156667777777777777777766666666632 11 345688999999999999999999999
Q ss_pred hhhhhHHHHHHhhccc--------------------------ch----------HHHHHHHHHHHHHHhhCCCccccccc
Q psy14676 894 HIERVMPLILKYSREE--------------------------DD----------ELREFCLQACEAFVQRCPKEITPHIQ 937 (1827)
Q Consensus 894 yl~~ilP~ll~~l~d~--------------------------~~----------~vre~al~Ale~~v~~~~~~i~p~l~ 937 (1827)
|++.+||.+++..+-+ +. +-++.|+.++..+....+..+.||+.
T Consensus 603 ~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve 682 (1075)
T KOG2171|consen 603 FLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVE 682 (1075)
T ss_pred HHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 9999999999876520 00 11334444444444444444445443
Q ss_pred cccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHH-HHhhhhccccch
Q psy14676 938 SIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQ-LFLHCECQEEGT 1016 (1827)
Q Consensus 938 ~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~-L~~~l~~~e~~v 1016 (1827)
+ .++. +....-...++|
T Consensus 683 ~--------------------------------------------------------------v~~l~v~~l~f~fhdgV 700 (1075)
T KOG2171|consen 683 Q--------------------------------------------------------------VVELMVPLLKFYFHDGV 700 (1075)
T ss_pred H--------------------------------------------------------------HHHHHHHHHHhhhhhHH
Confidence 2 2220 000011223444
Q ss_pred hhHHHHHHhhhccc-------CCC-------CchHHHHHHhc-cCChhhHHHHHHHHHHHHHhcc-ccccccccchhhhh
Q psy14676 1017 RNVVAECLGKLTLI-------DPS-------NLLPRLQESLK-SNSALMRTTHQSNQTFNVIIQR-NDIHNHNEETSFIY 1080 (1827)
Q Consensus 1017 R~~a~e~Lg~L~~~-------~~~-------~llP~L~~~L~-s~~~~~R~~a~~~L~~l~~~~~-~~l~~~~~~~~~~~ 1080 (1827)
|..+.++++.+..- .|. .+.|.+.+.+. .+...+-.+.+..++.....++ ..+.+- +.++...
T Consensus 701 R~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~-~~~~~~~ 779 (1075)
T KOG2171|consen 701 RKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNED-GLEALLG 779 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcH-HHHHHHH
Confidence 44444444433211 111 12233333332 2233344444444442222222 222221 0011100
Q ss_pred hhhhhhhHHHHHhhcCC--------------------chhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHH
Q psy14676 1081 SFYYFLLSPVIASVGDN--------------------FYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLV 1140 (1827)
Q Consensus 1081 ~~l~~Lip~l~~~l~D~--------------------~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~ 1140 (1827)
-....+..++ ...+|. ...+-.++...+..+++.. +..|.|++..+++.+..
T Consensus 780 ~~~~~~l~~~-~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~-------k~~f~p~f~~~~p~iv~ 851 (1075)
T KOG2171|consen 780 GLLAQLLQHF-KRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKAL-------KGSFLPFFENFLPLIVK 851 (1075)
T ss_pred HHHHHHHHHH-HHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHc-------cccccHHHHHHHHHHHH
Confidence 0011111111 111111 1111223334444455443 46788999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhhhH
Q psy14676 1141 RLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTDGI 1218 (1827)
Q Consensus 1141 ~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l 1218 (1827)
.+..+ ...+ |+.|+.+++.++...|..-.++...++|.+++.+.++.+ |..|++.+|.++...+. +..|.+....
T Consensus 852 ~l~~~-~~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~-~y~~v~~~~l 928 (1075)
T KOG2171|consen 852 LLKSK-KTVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGE-DYAPVCSEAL 928 (1075)
T ss_pred HHhcC-CcHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc-chHHHHHHHH
Confidence 99843 3445 999999999999999998888999999999999988776 99999999999987653 3566666667
Q ss_pred hhhhhhhcc------hhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHh-hhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1219 PILGSFLRK------NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVEL-APLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1219 ~~L~~~Lrk------~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L-~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
+.|...+.. .++..+.++..|+..++...+..++ +..+++.+ ..+.-.+|..-.......|+.+.+.++.
T Consensus 929 ~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~---vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p 1005 (1075)
T KOG2171|consen 929 PLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP---VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHP 1005 (1075)
T ss_pred HHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc---HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCC
Confidence 766665442 2355778899999999998887766 33444444 4455678888889999999999997654
Q ss_pred ccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHh
Q psy14676 1292 ALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEE 1331 (1827)
Q Consensus 1292 ~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~e 1331 (1827)
.+. |.-++ .+|.+..++...+.+..-+
T Consensus 1006 ~v~--------~~~n~-----~ip~i~~v~~~~~~~~~~~ 1032 (1075)
T KOG2171|consen 1006 IVL--------GPNNQ-----NIPKILSVCAESLADKKIE 1032 (1075)
T ss_pred eee--------CCCcc-----cchHHHHHHHhhhhccCCC
Confidence 321 11111 2356777777777655433
No 6
>KOG2023|consensus
Probab=100.00 E-value=1.1e-40 Score=393.64 Aligned_cols=541 Identities=19% Similarity=0.277 Sum_probs=383.4
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-----hhHHHHH
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-----FHFVILT 82 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-----~~~~il~ 82 (1827)
+|.+.++-..||++.=... ..++++|.|.+.++++ +..+.++|+.+|..++++-+..++. ...-+++
T Consensus 106 Ir~tvGivITTI~s~~~~~-------~wpelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mip 177 (885)
T KOG2023|consen 106 IRATVGIVITTIASTGGLQ-------HWPELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIP 177 (885)
T ss_pred HHhhhhheeeeeecccccc-------cchhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHH
Confidence 5666666666665544333 3799999999999864 7789999999999999999877654 2446888
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH
Q psy14676 83 ALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL---TTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER 159 (1827)
Q Consensus 83 ~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L---~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~ 159 (1827)
.+++.++|++|.+|+.|+.|+..++..-++.++.+ ++.+++.| .++.++.||+..|.++.-+.+..++++.||++.
T Consensus 178 kfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~ 256 (885)
T KOG2023|consen 178 KFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDN 256 (885)
T ss_pred HHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHH
Confidence 89999999999999999999999999888776543 56666664 678889999999999999999999999999999
Q ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHhC-----CCccccchHHHHHHHHHHhccCCCCC--cccccccCCCCCCCCC
Q psy14676 160 VMPLILKYSREEDDELREFCLQACEAFVQRC-----PKEITPHIQSITELCLTYITYDPNYN--YEDEEEGLGGEGGGEG 232 (1827)
Q Consensus 160 i~p~l~~~~~~~~delRe~al~ale~~~~~~-----p~e~~p~l~~ii~~ll~~l~~dpn~~--~~ddd~~~~~~~~~~~ 232 (1827)
|+.+|++..++.+++ .|++|+|+|...+ +..+.||++.++|+++..|.|...-. .+++||+..-.|-+++
T Consensus 257 IveyML~~tqd~dE~---VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeD 333 (885)
T KOG2023|consen 257 IVEYMLQRTQDVDEN---VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREED 333 (885)
T ss_pred HHHHHHHHccCcchh---HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhh
Confidence 999999988876665 7899999999865 34578999999999999999953211 1111111000000000
Q ss_pred CC---------CcccCCCCCCCCCCCC-CCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHH
Q psy14676 233 MD---------TEEEDGEDEGEDDNEY-SDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVK 302 (1827)
Q Consensus 233 ~d---------~~~~d~dde~e~~~e~-sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR 302 (1827)
+- ..+++.+||||+|||+ +||.+..|+.|+|+|++|+-+++..++ ++++.++|.|.+.+.+.+|-||
T Consensus 334 IkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vr 410 (885)
T KOG2023|consen 334 IKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVR 410 (885)
T ss_pred ccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhh
Confidence 00 0000101122222222 334456799999999999999998775 5788899999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH-HHHHHHHHHHHhCcccc
Q psy14676 303 SDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ-DCLALLRELVQTLPGCL 381 (1827)
Q Consensus 303 ~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~-a~~~ll~~L~~vl~~~l 381 (1827)
.+++.|+|++. +||.+.+-+++|.++|.++++|.|+.+-||. +||++-+.-..++...-
T Consensus 411 EagvLAlGAIA--------------------EGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~ 470 (885)
T KOG2023|consen 411 EAGVLALGAIA--------------------EGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR 470 (885)
T ss_pred hhhHHHHHHHH--------------------HHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh
Confidence 99999999998 6799999999999999999999999999998 99988766666665555
Q ss_pred cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14676 382 APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGD 461 (1827)
Q Consensus 382 ~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~ 461 (1827)
.+|+.+++.++.+.+- |.+=+|+.||+.++.++-+..|..+-|
T Consensus 471 ~~~f~pvL~~ll~~ll-------------------------------------D~NK~VQEAAcsAfAtleE~A~~eLVp 513 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLL-------------------------------------DSNKKVQEAACSAFATLEEEAGEELVP 513 (885)
T ss_pred HhhhHHHHHHHHHHHh-------------------------------------cccHHHHHHHHHHHHHHHHhccchhHH
Confidence 5788888888777763 235569999999999999999999999
Q ss_pred hHHhhhhhHHHhhcch-hh--hhHHHHHHHHHHHHhhcccCCC------CCCCCCcccccCCCccch--hhchhhHHHHH
Q psy14676 462 MYRLVSPPLIARFKER-EE--NVKSDIFHAYMALLKGTRTFSP------LTPSDPNQMDQEDSPVCL--LSTQVPSLVKA 530 (1827)
Q Consensus 462 ~~~~l~~~L~~~~~d~-~~--~Vr~~a~~~l~~L~~~~g~~~~------~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~ 530 (1827)
|+..++..|+.+|+.. +. -|--+|+.++.+-+-.. +..| +.+...++....++...+ +-...-++..+
T Consensus 514 ~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~-Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~A 592 (885)
T KOG2023|consen 514 YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHA-LNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASA 592 (885)
T ss_pred HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHh-cCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 9999999999888544 22 34455666665543100 0000 111111222222221110 00011112222
Q ss_pred HHHHhhhhhhhhHHhH-------HHHHHHh-----hcCCCccccccchHHHHHHHhhhccccch--hhHHHHHHHHHHHh
Q psy14676 531 LQCQLREKSIRTRQDC-------LALLREL-----MTSSDKDFRFMATNDLMSELQKDSIKLDD--DSERKVVKMLLRLL 596 (1827)
Q Consensus 531 l~~~l~~~~~~~~~~~-------l~~l~~~-----~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~--~~~~~i~~~l~~~l 596 (1827)
+...+-+-...+.+.| +..+... +..||+||-.+++ ||.+.+.++...+.. ...+.++.+++.|+
T Consensus 593 L~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sL-DL~SGLaegLg~~ie~Lva~snl~~lll~C~ 671 (885)
T KOG2023|consen 593 LGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSL-DLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL 671 (885)
T ss_pred HhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeH-HHHhHHHHHhhhchHHHhhhccHHHHHHHHh
Confidence 2222212222222222 2233222 2345666666665 666666666654333 46677999999999
Q ss_pred hcchhhHHHHHHHhhhhHHHHhhhhh
Q psy14676 597 EDKNGEVQNLAVKCLGPLFKALTKIA 622 (1827)
Q Consensus 597 ~D~~~eV~~~A~~~lg~l~~~~~~~~ 622 (1827)
.|+.+|||+.|.+.||+++|++.+.+
T Consensus 672 ~D~~peVRQS~FALLGDltk~c~~~v 697 (885)
T KOG2023|consen 672 QDEVPEVRQSAFALLGDLTKACFEHV 697 (885)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998744
No 7
>KOG2171|consensus
Probab=100.00 E-value=9.7e-31 Score=331.94 Aligned_cols=947 Identities=16% Similarity=0.190 Sum_probs=591.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHH----hhchhHHH
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS-PRQAVRKRTIVALSHLVM----SCNLQLYT 116 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~----~~~~~~~~ 116 (1827)
|+..+.+ +|..+|..|=..|..+... +.+++.|...+++ +++.||.-|..-+..++. .++.+.-+
T Consensus 9 Ll~~l~s-pDn~vr~~Ae~~l~~~~~~---------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 9 LLQQLLS-PDNEVRRQAEEALETLAKT---------EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQ 78 (1075)
T ss_pred HHHHhcC-CCchHHHHHHHHHHHhhcc---------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 3344433 3667788888887765332 1267777777774 789999888776666554 45555666
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcccc
Q psy14676 117 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITP 196 (1827)
Q Consensus 117 ~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p 196 (1827)
++-..++..+.+...+.+|+..++.++.+++...+. .++++++++++..+..++..||.|+.-|-++....+...+|
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 777788888877778899999999999999988766 69999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcC
Q psy14676 197 HIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR 276 (1827)
Q Consensus 197 ~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~ 276 (1827)
|++.+.+++.+.|.. .|-.||-+|++++++++....
T Consensus 156 ~~~~l~~lf~q~~~d--------------------------------------------~s~~vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTD--------------------------------------------PSSPVRVAAVRALGAFAEYLE 191 (1075)
T ss_pred hHHHHHHHHHHhccC--------------------------------------------CcchHHHHHHHHHHHHHHHhc
Confidence 999999999998731 011499999999999998774
Q ss_pred --CchhhhHHhhhHH----HHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHH
Q psy14676 277 --DLIGDMYRLVSPP----LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKA 350 (1827)
Q Consensus 277 --~~l~~~~~~v~p~----L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~ 350 (1827)
....+.|..++|. +....++.+...-..++.+|..++. ...+.+.+++..|+..
T Consensus 192 ~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e--------------------~~pk~l~~~l~~ii~~ 251 (1075)
T KOG2171|consen 192 NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE--------------------SEPKLLRPHLSQIIQF 251 (1075)
T ss_pred cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh--------------------hchHHHHHHHHHHHHH
Confidence 2233345555554 4455577888888999999998883 2457889999999999
Q ss_pred HHHHhccC--CHhHHHHHHHHHHHHHHhCccc---ccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCC
Q psy14676 351 LQCQLREK--SIRTRQDCLALLRELVQTLPGC---LAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGE 425 (1827)
Q Consensus 351 l~~~L~d~--~~~vR~a~~~ll~~L~~vl~~~---l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~ 425 (1827)
.++..+++ +..+|+.+++++..+.+..|.- ..++.++|+|.+..++.+. +.|+|.-++++.
T Consensus 252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~--------------~~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 252 SLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEE--------------EDDDEWSNEDDL 317 (1075)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCc--------------ccchhhcccccc
Confidence 99988665 4679999999999999998873 3578899999999997321 111111122222
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCC
Q psy14676 426 DDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTP 504 (1827)
Q Consensus 426 ~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~ 504 (1827)
||+++++ -...|.+++-.++.++| +.+.| .+++.+...++...++-|.+|+-.++.+.++.+
T Consensus 318 ded~~~~-------~~~~A~~~lDrlA~~L~g~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~------- 380 (1075)
T KOG2171|consen 318 DEDDEET-------PYRAAEQALDRLALHLGGKQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCS------- 380 (1075)
T ss_pred ccccccC-------cHHHHHHHHHHHHhcCChhhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-------
Confidence 2222221 23567888888888888 44443 344555666777888888888877666665433
Q ss_pred CCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhh
Q psy14676 505 SDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDS 584 (1827)
Q Consensus 505 ~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~ 584 (1827)
+ .+.+ .
T Consensus 381 --------------------------------~-------~m~~-----------------------------------~ 386 (1075)
T KOG2171|consen 381 --------------------------------D-------VMIG-----------------------------------N 386 (1075)
T ss_pred --------------------------------H-------HHHH-----------------------------------H
Confidence 0 0111 3
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14676 585 ERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLL 664 (1827)
Q Consensus 585 ~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~ 664 (1827)
.++++++++..++|++++||+-|..++|++. .||.|.+
T Consensus 387 l~~Il~~Vl~~l~DphprVr~AA~naigQ~s------------tdl~p~i------------------------------ 424 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPRVRYAALNAIGQMS------------TDLQPEI------------------------------ 424 (1075)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh------------hhhcHHH------------------------------
Confidence 4678899999999999999999999888775 2222111
Q ss_pred hhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchh-hhhhhhHHHhhhhc---ccccchhhhh
Q psy14676 665 VNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEP-AAASILPQVLQIAK---SPLLQGAALT 740 (1827)
Q Consensus 665 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~-~~~~llp~ll~l~~---s~~~~~~al~ 740 (1827)
+. +...++|.++...+ +++++-+|-.
T Consensus 425 --------------------------------------------------qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~ 454 (1075)
T KOG2171|consen 425 --------------------------------------------------QKKHHERLPPALIALLDSTQNVRVQAHAAA 454 (1075)
T ss_pred --------------------------------------------------HHHHHHhccHHHHHHhcccCchHHHHHHHH
Confidence 11 12334455555443 2333444455
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhH
Q psy14676 741 SMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQV 820 (1827)
Q Consensus 741 ~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~ 820 (1827)
++.+|+
T Consensus 455 al~nf~-------------------------------------------------------------------------- 460 (1075)
T KOG2171|consen 455 ALVNFS-------------------------------------------------------------------------- 460 (1075)
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 555543
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHh----hhcCCCChhhHHHHHHHHHHHHHhccccchhhhh
Q psy14676 821 TIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLE----GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE 896 (1827)
Q Consensus 821 ~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~----~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~ 896 (1827)
..+..+.+..+.+.+.. .+.++.++.+|+.++++++.+|..+++.|.||.+
T Consensus 461 -------------------------E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d 515 (1075)
T KOG2171|consen 461 -------------------------EECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD 515 (1075)
T ss_pred -------------------------HhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 33333333333333333 3455678899999999999999999999999999
Q ss_pred hhHHHHHHhhcccc-hHHHHHHHHHHHHHHh---hCC-CccccccccccccCCcchhhhhHHHHHhh-cCCChHhHhhhh
Q psy14676 897 RVMPLILKYSREED-DELREFCLQACEAFVQ---RCP-KEITPHIQSIGRHTDLTSVADLKQVILNA-FTPTSEEVKSAA 970 (1827)
Q Consensus 897 ~ilP~ll~~l~d~~-~~vre~al~Ale~~v~---~~~-~~i~p~l~~i~~~~~~s~~~~L~~~l~~~-~~~~~e~~r~~~ 970 (1827)
++||.+.+.++..+ ++.|+...+++|.... -.+ ..+.|+..+++. ++... .++-++ .+...
T Consensus 516 ~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliq------------ll~~~~~~~~~~-dd~~~ 582 (1075)
T KOG2171|consen 516 RLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQ------------LLLELQGSDQDD-DDPLR 582 (1075)
T ss_pred HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHH------------HHHhhcccchhh-ccccH
Confidence 99999999999754 7778777777666432 122 345555544432 11100 000000 00000
Q ss_pred hcccchhhHhhhhcccccchhhhhhh----hHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHH---HHHh
Q psy14676 971 SYTLGSIAEIISWQSTSTSGVAQLQQ----FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRL---QESL 1043 (1827)
Q Consensus 971 ~~~lg~~~~~i~Wk~~~~~~~~~l~~----~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L---~~~L 1043 (1827)
+|.... -+...+.+-+ ++|.+|.-+++..+-..+..- .--+..............+.= .=.+
T Consensus 583 sy~~~~----------warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~-~d~~d~e~~~~~~~~e~~~~~~~e~~~I 651 (1075)
T KOG2171|consen 583 SYMIAF----------WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL-SDEEDEEEEQDLDGWEVVELGDKENIGI 651 (1075)
T ss_pred HHHHHH----------HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-cCchhhhhccccccchhhccCCceeeee
Confidence 000000 0112233332 224444444443211100000 000000000000000000000 0001
Q ss_pred ccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhh-cCCchhhHHHHHHHHHHHHHHhccCCCC
Q psy14676 1044 KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASV-GDNFYKITAEALLVLQQFVKVIRPLTSP 1122 (1827)
Q Consensus 1044 ~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l-~D~~~~V~~eAl~~l~~lv~~l~~~~~~ 1122 (1827)
+.+-...|..+|.+|+.++...+..|.|| +.+.++.++..+ -.....||..|+..+..+++..+..-..
T Consensus 652 ~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pY----------ve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~ 721 (1075)
T KOG2171|consen 652 RTSVLDEKETACEALGEYAKELKEAFAPY----------VEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQG 721 (1075)
T ss_pred eehhHHHHHHHHHHHHHHHHhhhhhhhhH----------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22345689999999999999999999999 666666333333 3445679999999998888875531001
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh-hhh-hhhhhhHHHHHHhhhhhhhHHHHHHHHHH
Q psy14676 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGD-YLK-SELPVCLPILLDRLRNEITRLTTVKALTK 1200 (1827)
Q Consensus 1123 ~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~-~l~-~~l~~lL~~Ll~~L~~e~tR~~av~al~~ 1200 (1827)
+.....+....+.+.++..+. ...+.+|-..-+++++..++..|+ .|. ++...++..+..++.+-..|..-.+.-+.
T Consensus 722 ~p~~l~~l~~~~~~~l~~~l~-~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~ 800 (1075)
T KOG2171|consen 722 GPEYLKQLWEAIRPALIKALE-EEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDD 800 (1075)
T ss_pred ChHHHHHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 112222333444455555554 355788999999999999999996 444 46777777777776655444332222110
Q ss_pred HhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHH
Q psy14676 1201 IAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLT 1280 (1827)
Q Consensus 1201 ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~ 1280 (1827)
- +.+.. ...+... .++..+-....+.+..+++..+....+ ....+.|.+..++..+...-|+.++.
T Consensus 801 e---------ed~d~-~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p-~f~~~~p~iv~~l~~~~~~~r~~av~ 866 (1075)
T KOG2171|consen 801 E---------EDDDI-EEEEDLD---EQDAYLLDAISDILAALAKALKGSFLP-FFENFLPLIVKLLKSKKTVARQWAVC 866 (1075)
T ss_pred h---------hhhhh-HHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccH-HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 0 01111 0111111 344445556667777777777766554 46788888899998887777999888
Q ss_pred HHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q psy14676 1281 LLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIE 1360 (1827)
Q Consensus 1281 ~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~ 1360 (1827)
++..+++.+... . +.....+.|.++.++.|.++|||++|++.+|-.+--.=..|-|.+...+.
T Consensus 867 ~~~d~ie~~~~a----------------~-~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~ 929 (1075)
T KOG2171|consen 867 IFDDLIEGCGEA----------------S-AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALP 929 (1075)
T ss_pred HHHHHHHhcccc----------------c-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 888887754321 1 23446799999999999999999999999998653222224444433221
Q ss_pred cCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-----cchHHH
Q psy14676 1361 NQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-----NLLPRL 1435 (1827)
Q Consensus 1361 ~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-----~~lP~L 1435 (1827)
.|..++.. .+.+ .......+.++..|++|+...+|. .++|.+
T Consensus 930 -----------~L~~~iq~--------------------~~ar--~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~ 976 (1075)
T KOG2171|consen 930 -----------LLVQVLQP--------------------PLAR--TEENRRATENAIGAIAKILLFNPNRIPVDQVLPAW 976 (1075)
T ss_pred -----------HHHHHHcC--------------------hhhh--hHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHH
Confidence 11112110 0000 001122466788999999987764 466666
Q ss_pred HHhhh-cCCHHHHHHHHHHHHHHhhh
Q psy14676 1436 QESLK-SNSALMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1436 ~~~l~-~~~~~~R~t~l~Alk~~~~~ 1460 (1827)
...|. ..|...-....+-|..++..
T Consensus 977 l~~LPl~~D~eEa~~iy~~l~~L~e~ 1002 (1075)
T KOG2171|consen 977 LSWLPLKEDKEEAVPIYTFLSDLYES 1002 (1075)
T ss_pred HHhCCCccchhhhhhHHHHHHHHHHh
Confidence 66664 33444444455555666543
No 8
>KOG1241|consensus
Probab=99.98 E-value=7.7e-28 Score=290.91 Aligned_cols=691 Identities=15% Similarity=0.214 Sum_probs=464.2
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhh------------hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC-
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAA------------NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP- 74 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~------------~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~- 74 (1827)
-+.|.+..|+|+.+--|...+..++ +..+.+++.|...+.++....+|+.+|.+||.+|++..|...
T Consensus 88 reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~ 167 (859)
T KOG1241|consen 88 REQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE 167 (859)
T ss_pred HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH
Confidence 4556777888888777776653333 334778888888875543446999999999999999987643
Q ss_pred chhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHH
Q psy14676 75 SFHFVILTALLPQLSS--PRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL----TTNKSTSTNRTYIQCFAAICRQ 148 (1827)
Q Consensus 75 ~~~~~il~~ll~~L~~--~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L----~~~~~~~~r~~ai~~l~~la~~ 148 (1827)
.....++.++...+.. ++..||-.|..||-+-.+.....+-.+.-.+++... .+.++..++..+++||..|...
T Consensus 168 ~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L 247 (859)
T KOG1241|consen 168 QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL 247 (859)
T ss_pred HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence 3566899999999875 567999999999999888776543333333444332 3456788999999999999999
Q ss_pred hchhhHHhHHH-HHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccc----------cc------------hHHHHHHH
Q psy14676 149 AGHRFAEHIER-VMPLILKYSREEDDELREFCLQACEAFVQRCPKEIT----------PH------------IQSITELC 205 (1827)
Q Consensus 149 ~~~~~~p~l~~-i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~----------p~------------l~~ii~~l 205 (1827)
..+++.+|+.+ +++..+..+..++|+ .|+|++|+|...|.+|+. .+ ++.++|.+
T Consensus 248 yY~~m~~yM~~alfaitl~amks~~de---ValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 248 YYEFMEPYMEQALFAITLAAMKSDNDE---VALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVL 324 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence 99999999987 899989988877776 579999999998865443 22 34789999
Q ss_pred HHHhcc-CCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH
Q psy14676 206 LTYITY-DPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR 284 (1827)
Q Consensus 206 l~~l~~-dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~ 284 (1827)
++.+.. |||+ ||| .|++-+||..||.-++...++ .+.+
T Consensus 325 l~~L~kqde~~------------------------------------d~D--dWnp~kAAg~CL~l~A~~~~D---~Iv~ 363 (859)
T KOG1241|consen 325 LELLTKQDEDD------------------------------------DDD--DWNPAKAAGVCLMLFAQCVGD---DIVP 363 (859)
T ss_pred HHHHHhCCCCc------------------------------------ccc--cCcHHHHHHHHHHHHHHHhcc---cchh
Confidence 988865 2110 111 299999999999999999887 4566
Q ss_pred hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH
Q psy14676 285 LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ 364 (1827)
Q Consensus 285 ~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~ 364 (1827)
.++|++.+.++.++|.-|.+++.|||.++.. -+...+.+.++..+|.+++.+.|++.-||.
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g-------------------p~~~~Lt~iV~qalp~ii~lm~D~sl~Vkd 424 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEG-------------------PEPDKLTPIVIQALPSIINLMSDPSLWVKD 424 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC-------------------CchhhhhHHHhhhhHHHHHHhcCchhhhcc
Confidence 8999999999999999999999999999842 123567889999999999999999999999
Q ss_pred HHHHHHHHHHHhCcccc--cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHH
Q psy14676 365 DCLALLRELVQTLPGCL--APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRR 442 (1827)
Q Consensus 365 a~~~ll~~L~~vl~~~l--~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~ 442 (1827)
++...|+.++..+|.+. ..|++.+++.+...|+|.+..+.+ .+|+.-.
T Consensus 425 TaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N------------------------------~CWAf~~ 474 (859)
T KOG1241|consen 425 TAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASN------------------------------VCWAFIS 474 (859)
T ss_pred hHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHH------------------------------HHHHHHH
Confidence 77777899999999755 568899999999999877666422 4675532
Q ss_pred HHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcc---hhhhhHHHHHHHHHHHHhhccc-CCCCCCCCCcccccCCCc
Q psy14676 443 AAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKE---REENVKSDIFHAYMALLKGTRT-FSPLTPSDPNQMDQEDSP 516 (1827)
Q Consensus 443 ~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d---~~~~Vr~~a~~~l~~L~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (1827)
.|-.+--..... | +...|||+.++..|+....- ...+.|.+|++.|.++++...- .+|
T Consensus 475 Laea~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~--------------- 538 (859)
T KOG1241|consen 475 LAEAAYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP--------------- 538 (859)
T ss_pred HHHHHHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH---------------
Confidence 221111111111 2 34558999999999987633 4679999999999999987541 111
Q ss_pred cchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHH----HHHHhhhccccchhhHHHHHHHH
Q psy14676 517 VCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDL----MSELQKDSIKLDDDSERKVVKML 592 (1827)
Q Consensus 517 ~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl----~~~~~~~~~~~d~~~~~~i~~~l 592 (1827)
.+....+.++.++.+.+.......-. .-.++.+.++ ++.+.++.-+--......++..+
T Consensus 539 --~v~~~~l~il~kl~q~i~~~~l~~~d---------------r~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lf 601 (859)
T KOG1241|consen 539 --MVQKLTLVILEKLDQTISSQILSLAD---------------RAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLF 601 (859)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhccHhh---------------HHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Confidence 13344566666666555411110000 0001111110 11111221121124667889999
Q ss_pred HHHhhc-chhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhh-hhhhhhhhHHHHHHHHhhCCCc
Q psy14676 593 LRLLED-KNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKN-QRALKLSTLLLLDTLLVNYPSA 670 (1827)
Q Consensus 593 ~~~l~D-~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~-~~~lk~~~l~~l~~l~~~~~~~ 670 (1827)
+++++- .+.-|+..|+-+++.++..++. .|.+|+|.++|-|..+|+.. .+.
T Consensus 602 lri~~s~~s~~v~e~a~laV~tl~~~Lg~--------~F~kym~~f~pyL~~gL~n~~e~q------------------- 654 (859)
T KOG1241|consen 602 LRIFESKRSAVVHEEAFLAVSTLAESLGK--------GFAKYMPAFKPYLLMGLSNFQEYQ------------------- 654 (859)
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhH--------hHHHHHHHHHHHHHHHhhcchHHH-------------------
Confidence 999987 6678999999999999999985 78899999999999888543 332
Q ss_pred ccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHH
Q psy14676 671 ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLV 750 (1827)
Q Consensus 671 ~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv 750 (1827)
+...|..+++-++.. + .+ +|
T Consensus 655 -----------------------Vc~~aVglVgdl~ra---------L---------------------~~--~i----- 674 (859)
T KOG1241|consen 655 -----------------------VCAAAVGLVGDLARA---------L---------------------ED--DI----- 674 (859)
T ss_pred -----------------------HHHHHHHHHHHHHHH---------H---------------------Hh--hh-----
Confidence 333333333333210 0 00 00
Q ss_pred hhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcc----CCCchhHHHHHHh
Q psy14676 751 LAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTN----KDDAHQVTIVALS 826 (1827)
Q Consensus 751 ~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~----~~~~~~~~~~~~~ 826 (1827)
.++..+++..|+..+. ++.+||..=-.|..|||.+.-+++.+-.++.+.++..++.. +++++ ++
T Consensus 675 -----~py~d~~mt~Lvq~Ls-s~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~------~~ 742 (859)
T KOG1241|consen 675 -----LPYCDELMTVLVQCLS-SPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPAD------DS 742 (859)
T ss_pred -----hhHHHHHHHHHHHHcc-CccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCc------cc
Confidence 1223334444443332 23344444446777888888888877666666666655431 11100 11
Q ss_pred hhhh-hhhhHHHHHHHHHHHhhhc----HHHHHHHHHHHHhhh---cCC--CChhhHHHHHHHHHHHHHhccccchhhhh
Q psy14676 827 HLVM-SCNLQLTIVALSHLVMSCN----LQLYTKLIDFLLEGL---TTN--KSTSTNRTYIQCFAAICRQAGHRFAEHIE 896 (1827)
Q Consensus 827 ~~~~-~~~r~~Ai~aL~~l~~~~~----~~~~~~l~~~l~~~l---~~~--~~~~vr~~~l~~l~~L~~~~~~~~~~yl~ 896 (1827)
.+-| --+|..++++.+-++-.+. ..+...+.+.++.-+ ..+ .+-.+.++++.++|.|+..+|.+..+.+.
T Consensus 743 ~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 743 MVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 1111 1277777777766665554 234445566655533 333 34578899999999999999988776544
Q ss_pred h---hHHHHHHhhcccchHHHHHHHHHHHH
Q psy14676 897 R---VMPLILKYSREEDDELREFCLQACEA 923 (1827)
Q Consensus 897 ~---ilP~ll~~l~d~~~~vre~al~Ale~ 923 (1827)
+ |..++-++.+..+...|+.|--|.+.
T Consensus 823 ~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ 852 (859)
T KOG1241|consen 823 DEDWIKDFLNEGRKSSTQKTKDLARWATEE 852 (859)
T ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3 55555555544556667776555544
No 9
>KOG1241|consensus
Probab=99.95 E-value=6.5e-24 Score=257.20 Aligned_cols=636 Identities=16% Similarity=0.207 Sum_probs=431.5
Q ss_pred cccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHH
Q psy14676 670 AISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSL 749 (1827)
Q Consensus 670 ~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~l 749 (1827)
+++++..++|+..+...++.+-+..+..|..++..|+.
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~------------------------------------------ 119 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIAC------------------------------------------ 119 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHH------------------------------------------
Confidence 56777777777777777776666667777666666653
Q ss_pred HhhhCCCCCHHHHHHHhhccccc-cchhhhhhHHHHHHHHHHHHHHhhhhhh-----hHHHHHHHHhhccCCCchhHHHH
Q psy14676 750 VLAELPGLSFSELLNMLIAPVMT-GTALHKQAFHSLAKCVAALAITVQREAL-----PVVEKFLKELKTNKDDAHQVTIV 823 (1827)
Q Consensus 750 v~~~~~~~~~~~ll~~L~~~~~~-~~~~~~~al~~~~~~~g~~~~~~~~~~~-----~~v~~~l~~l~~~~~~~~~~~~~ 823 (1827)
.|+|..-|++++..|.+.++. ++...|+ +....+|++|..+.++.+ ..++.+++.+.....++
T Consensus 120 --~ElP~n~wp~li~~lv~nv~~~~~~~~k~---~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~------ 188 (859)
T KOG1241|consen 120 --IELPQNQWPELIVTLVSNVGEEQASMVKE---SSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSA------ 188 (859)
T ss_pred --hhCchhhCHHHHHHHHHhcccccchHHHH---HHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCch------
Confidence 233444444444444444432 2223344 567778999988777643 33466666766533222
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhh-cC---CCChhhHHHHHHHHHHHHHhccccchhhhhh-h
Q psy14676 824 ALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGL-TT---NKSTSTNRTYIQCFAAICRQAGHRFAEHIER-V 898 (1827)
Q Consensus 824 ~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l-~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~-i 898 (1827)
.+|-.|..||.+...|...+|-++..+..++.. +. .++..++.++++|+..+..-+++.+.+|+.+ +
T Consensus 189 --------~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~al 260 (859)
T KOG1241|consen 189 --------AVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQAL 260 (859)
T ss_pred --------hHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999988863 33 6778999999999999999999999999999 9
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhh
Q psy14676 899 MPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA 978 (1827)
Q Consensus 899 lP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~ 978 (1827)
.+..+.++..++++| |+||+|+|...|..+++.++.- .. .++. + +..
T Consensus 261 faitl~amks~~deV---alQaiEFWsticeEEiD~~~e~-~e----------------~~d~----------~-~~p-- 307 (859)
T KOG1241|consen 261 FAITLAAMKSDNDEV---ALQAIEFWSTICEEEIDLAIEY-GE----------------AVDQ----------G-LPP-- 307 (859)
T ss_pred HHHHHHHHcCCcHHH---HHHHHHHHHHHHHHHHHHHHHH-HH----------------Hhhc----------C-CCc--
Confidence 999999999888886 7999999999999998876541 00 0000 0 000
Q ss_pred HhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhh---HHHHHHhhhcccCCC----CchHHHHHHhccCChhhH
Q psy14676 979 EIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN---VVAECLGKLTLIDPS----NLLPRLQESLKSNSALMR 1051 (1827)
Q Consensus 979 ~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~---~a~e~Lg~L~~~~~~----~llP~L~~~L~s~~~~~R 1051 (1827)
.+-+....++..+.|.+++.|-++-++.+++.|+ .|..||.-++....+ .++|.+.+.+++++|.-|
T Consensus 308 ------~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~r 381 (859)
T KOG1241|consen 308 ------SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNR 381 (859)
T ss_pred ------hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhh
Confidence 0001234567888999999999887666666664 578999888877554 466677778899999999
Q ss_pred HHHHHHHHH-HHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc--------------------------------
Q psy14676 1052 TTHQSNQTF-NVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF-------------------------------- 1098 (1827)
Q Consensus 1052 ~~a~~~L~~-l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~-------------------------------- 1098 (1827)
+.++-++|. +.-..+..++|+ ++..+|.++..+.|+.
T Consensus 382 eaavmAFGSIl~gp~~~~Lt~i----------V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKLTPI----------VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred hHHHHHHHhhhcCCchhhhhHH----------HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 999999994 444445566665 6677777776666655
Q ss_pred ----------hhhHHHHHHHHHHHHHHhccC-CCC-CCCCcchhHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHH
Q psy14676 1099 ----------YKITAEALLVLQQFVKVIRPL-TSP-SSYDFAPFTSDIYQCTLVRLKAAD-IDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1099 ----------~~V~~eAl~~l~~lv~~l~~~-~~~-~~~~~~~~l~~l~~~ll~~L~~~D-~d~eVre~Ai~alg~l~~~ 1165 (1827)
|+|++.+++++..|++....- .+. ......||++.|+..++......| .+...|-+|.++|++++.+
T Consensus 452 ~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~ 531 (859)
T KOG1241|consen 452 SALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN 531 (859)
T ss_pred HHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence 444445555555555443210 011 112334788888888888766555 4677999999999999999
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhh--------HHH-----H--HHHHHHHhcCCCccccchhhhhhHhhhhhhhcc-hh
Q psy14676 1166 LGDYLKSELPVCLPILLDRLRNEIT--------RLT-----T--VKALTKIAASPLRIDLRPILTDGIPILGSFLRK-NQ 1229 (1827)
Q Consensus 1166 ~g~~l~~~l~~lL~~Ll~~L~~e~t--------R~~-----a--v~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk-~~ 1229 (1827)
..+...+-...+...++++|.+... |.. + .-.|+.|.....+ |..++...++..|.+.+.+ .+
T Consensus 532 st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s 610 (859)
T KOG1241|consen 532 STDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRS 610 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCcc
Confidence 9988888788888888887754321 211 1 1123333332222 5667777777777766655 33
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc-CCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV-SESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRH 1308 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll-~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~ 1308 (1827)
..+...++-|+++++.+.+..+. .+++.+.|.|...+ +-.|.+|...+.+..+.++...... +-+
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~-kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~------------i~p- 676 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFA-KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD------------ILP- 676 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh------------hhh-
Confidence 45778899999999998666542 36777888888877 6689999999999999988843321 111
Q ss_pred cCCCchhhHHHHHHHhcCCC--CHhHHHHHHHHHhhhhh---hhhhhhHHHHHHhhhc------Cc----------hhhH
Q psy14676 1309 TDLTSVADLKQVILNAFTPT--SEEVKSAASYTLGSIAV---GNLQQYVPFVLKEIEN------QP----------KRQY 1367 (1827)
Q Consensus 1309 ~~~~~~~~l~~~~l~~~~~~--s~eVr~aAa~aLG~i~~---~~l~~~LP~Il~~i~~------~~----------~~q~ 1367 (1827)
+-..++..+++++.++ ..+||=+.....|+|+. .++.+||-.++..++. .+ +.|.
T Consensus 677 ----y~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe 752 (859)
T KOG1241|consen 677 ----YCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELRE 752 (859)
T ss_pred ----HHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHH
Confidence 2257888999999886 56788888888898653 4788888877765532 11 1222
Q ss_pred HHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCC--chhHHHHHHHHHHHhhccCCCcchHHH
Q psy14676 1368 LLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQ--EEGTRNVVAECLGKLTLIDPSNLLPRL 1435 (1827)
Q Consensus 1368 ~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~--~e~vR~~aAecLGkL~~~~p~~~lP~L 1435 (1827)
-++.+---+++.+... --...+.||++.|+..+-+....+ +|.+-..++.-||-|+..+|..+++.+
T Consensus 753 ~~leay~gi~qglk~~-~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~ 821 (859)
T KOG1241|consen 753 GILEAYTGIIQGLKTH-ADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLF 821 (859)
T ss_pred HHHHHHHHHHHHhhcc-cchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhh
Confidence 3344443444322110 002346799999988776654322 255566677889999999886555443
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.91 E-value=1.9e-19 Score=210.84 Aligned_cols=391 Identities=15% Similarity=0.208 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhh------------hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccC-CCC
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAA------------NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGA-LLP 74 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~------------~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~-~l~ 74 (1827)
-..+.+.+|+++.+--|+.++..++ +..+.++-.+......+....++.+++.++|.+|+.-.| .+.
T Consensus 92 k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li 171 (858)
T COG5215 92 KEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI 171 (858)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence 3456778888888888887753333 122334444444444444677899999999999999888 343
Q ss_pred chhHHHHHHHhhh-cCC-CCHHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHhc---cCCCCHHHHHHHHHHHHHHHHH
Q psy14676 75 SFHFVILTALLPQ-LSS-PRQAVRKRTIVALSHLVMSCNLQLYTKLI-DFLLEGL---TTNKSTSTNRTYIQCFAAICRQ 148 (1827)
Q Consensus 75 ~~~~~il~~ll~~-L~~-~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~-~~ll~~L---~~~~~~~~r~~ai~~l~~la~~ 148 (1827)
.....++..+... ++. +..+||-.|..||-.-........-.+.- ..+++.. .+.++.+++..++.|+..+.-.
T Consensus 172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 3344555555444 554 56799999999988754444333222221 2223322 4456788999999999999999
Q ss_pred hchhhHHhHHHHH-HHHHhhcccCchHHHHHHHHHHHHHHHhCCCccc-----cc---------------hHHHHHHHHH
Q psy14676 149 AGHRFAEHIERVM-PLILKYSREEDDELREFCLQACEAFVQRCPKEIT-----PH---------------IQSITELCLT 207 (1827)
Q Consensus 149 ~~~~~~p~l~~i~-p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~-----p~---------------l~~ii~~ll~ 207 (1827)
..+.+.+|+++.+ .+..+.+....|+ .++|+.|+|...|.+++. .| ...++|.++.
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~---va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~ 328 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDE---VAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLS 328 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchH---HHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHH
Confidence 9999999998644 4445666777776 579999999998866432 22 2347888887
Q ss_pred Hhcc-CCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhh
Q psy14676 208 YITY-DPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 286 (1827)
Q Consensus 208 ~l~~-dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v 286 (1827)
.+.. +||| . +..|.+-.+|+.||.-++...++. +++.+
T Consensus 329 LL~~q~ed~-----------------------------------~---~DdWn~smaA~sCLqlfaq~~gd~---i~~pV 367 (858)
T COG5215 329 LLEKQGEDY-----------------------------------Y---GDDWNPSMAASSCLQLFAQLKGDK---IMRPV 367 (858)
T ss_pred HHHhcCCCc-----------------------------------c---ccccchhhhHHHHHHHHHHHhhhH---hHHHH
Confidence 7754 3332 0 113999999999999999988864 45567
Q ss_pred hHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH-H
Q psy14676 287 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ-D 365 (1827)
Q Consensus 287 ~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~-a 365 (1827)
+.++.+.+..+.|.-|.++.+|||+++. +.|...+...+|+.+|.+...+.|+..-|.. +
T Consensus 368 l~FvEqni~~~~w~nreaavmAfGSvm~-------------------gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~tt 428 (858)
T COG5215 368 LGFVEQNIRSESWANREAAVMAFGSVMH-------------------GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTT 428 (858)
T ss_pred HHHHHHhccCchhhhHHHHHHHhhhhhc-------------------CccHHHHHhhHHhhhHHHHHhcccceeehhhHH
Confidence 8888899999999999999999999983 2245678899999999999999999888888 6
Q ss_pred HHHHHHHHHHhCccccc--CchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHH
Q psy14676 366 CLALLRELVQTLPGCLA--PSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRA 443 (1827)
Q Consensus 366 ~~~ll~~L~~vl~~~l~--~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~ 443 (1827)
+|+ ++.++...+..+. .|++..+.....-++|.+.++.+ .+|+.-
T Consensus 429 Awc-~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~n------------------------------csw~~~-- 475 (858)
T COG5215 429 AWC-FGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSIN------------------------------CSWRKE-- 475 (858)
T ss_pred HHH-HHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhh------------------------------hHHHHH--
Confidence 666 8999999988775 47776666666666665544322 357653
Q ss_pred HHHHHHHHHHHh---hhhhhhhHHhhhhhHHHhh--cchhhhhHHHHHHHHHHHHhhc
Q psy14676 444 AAKCLEAIIATR---RDLIGDMYRLVSPPLIARF--KEREENVKSDIFHAYMALLKGT 496 (1827)
Q Consensus 444 a~~~l~~l~~~~---~~~f~~~~~~l~~~L~~~~--~d~~~~Vr~~a~~~l~~L~~~~ 496 (1827)
.+...+++.. ..++.+|+..++..|+... .+.+.+.|.++|.+++.|+...
T Consensus 476 --nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 476 --NLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred --hHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 3333334333 3556689999988888764 4557789999999999888643
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=3e-16 Score=215.77 Aligned_cols=1250 Identities=15% Similarity=0.128 Sum_probs=660.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc-hhH
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS--FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN-LQL 114 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~--~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~-~~~ 114 (1827)
.+|.|+..+.++ +..+|..|..+|..+..+ +.... .....++.++..|++.++..|+.|+.+|..++..-. +..
T Consensus 59 aIP~LV~lL~sg-~~~vk~nAaaaL~nLS~~--e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 59 AMPLLVSLLRSG-TLGAKVNAAAVLGVLCKE--EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh
Confidence 578899988754 788999999998888755 11100 013456677888888899999999999999997642 211
Q ss_pred ----H--HHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHHHhhcccCchHHHHHHHHHHHH
Q psy14676 115 ----Y--TKLIDFLLEGLTTNK--STSTNRTYIQCFAAICRQAGHRFAEHI-ERVMPLILKYSREEDDELREFCLQACEA 185 (1827)
Q Consensus 115 ----~--~~l~~~ll~~L~~~~--~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~p~l~~~~~~~~delRe~al~ale~ 185 (1827)
+ ...++.|+..|.... +..+++.++.+|..++.....+-..-+ ...+|.+++.++.+++++++.|..++..
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~ 215 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLAR 215 (2102)
T ss_pred hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 234677777775532 233567777888888876554322212 3588999999988889999888777766
Q ss_pred HHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHH
Q psy14676 186 FVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAA 264 (1827)
Q Consensus 186 ~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraA 264 (1827)
++..+++-....+ ...+|.+.+.+..++ .-++|..|
T Consensus 216 Lass~ee~~~aVIeaGaVP~LV~LL~sg~-------------------------------------------~~~VRE~A 252 (2102)
T PLN03200 216 LMMAFESSISKVLDAGAVKQLLKLLGQGN-------------------------------------------EVSVRAEA 252 (2102)
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHccCC-------------------------------------------ChHHHHHH
Confidence 6655543111111 235677777663210 01589999
Q ss_pred HHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCH---------hHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCC
Q psy14676 265 AKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREE---------NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQED 334 (1827)
Q Consensus 265 ak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee---------~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~ 334 (1827)
+.+|..++...++.-..+. ...+|.|+..+..+.+ ..+..++.+++.++..
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg------------------- 313 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG------------------- 313 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-------------------
Confidence 9999999975333211111 2457778877765443 3488899999988821
Q ss_pred ChHhhHHhhhHHHHHHHHHHhccCC-HhHHHHHHHHHHHHHHhCcccc--cCch--hhHHHHHHHHhhhhhcccCCCCCC
Q psy14676 335 SPLCLLSTQVPSLVKALQCQLREKS-IRTRQDCLALLRELVQTLPGCL--APSL--PALIPDVTSVAEWDEEEGLGGEGG 409 (1827)
Q Consensus 335 ~~~~~l~~~lp~Iv~~l~~~L~d~~-~~vR~a~~~ll~~L~~vl~~~l--~~~l--~~Llp~i~~~L~~~~~~~~~~~~~ 409 (1827)
.+.+++.+.+.+.... ..+.-.++..+..+...+.+.- ..-+ ..+++.+.+++++.
T Consensus 314 ---------~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k---------- 374 (2102)
T PLN03200 314 ---------MSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPR---------- 374 (2102)
T ss_pred ---------chhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCC----------
Confidence 1445666666554432 2222244444455544443321 1111 23456777777431
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcchhhhhHHHHHH
Q psy14676 410 GEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFH 487 (1827)
Q Consensus 410 ~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~ 487 (1827)
+ .-.++..+.++|..++...- ..|.. ....+.|+..+......++..+..
T Consensus 375 ------------------------~--p~~vqe~V~eALasl~gN~~l~~~L~~--~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 375 ------------------------D--TKLVQERIIEALASLYGNAYLSRKLNH--AEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred ------------------------C--CchhHHHHHHHHHHhcCChHHHHHHHh--ccchhhhhhhhccCCHHHHHHHHH
Confidence 0 00123445555544332111 12221 234566777777677778888887
Q ss_pred HHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchH
Q psy14676 488 AYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATN 567 (1827)
Q Consensus 488 ~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~ 567 (1827)
.+..|...-.- ..+.+ .....+|.+.+++...+++++..+..
T Consensus 427 aL~~L~~~~~e----------------------------~~~aI----------i~~ggIp~LV~LL~s~s~~iQ~~A~~ 468 (2102)
T PLN03200 427 ALSSLCCGKGG----------------------------LWEAL----------GGREGVQLLISLLGLSSEQQQEYAVA 468 (2102)
T ss_pred HHHHHhCCCHH----------------------------HHHHH----------HHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 77776643110 00000 11234677777777766666666555
Q ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccc--cchhhhhhhhh
Q psy14676 568 DLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPIL--TDGIPILGSFL 645 (1827)
Q Consensus 568 dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l--~~~i~~l~~~l 645 (1827)
.+-...+.+.-........-.++.|.++|...+.++|..|..+|+++...-.. ....+ .+++|.|..+|
T Consensus 469 ~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q---------ir~iV~~aGAIppLV~LL 539 (2102)
T PLN03200 469 LLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED---------IRACVESAGAVPALLWLL 539 (2102)
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH---------HHHHHHHCCCHHHHHHHH
Confidence 44444321100000112234588899999999999999999999998742111 11222 36788899999
Q ss_pred hhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccch-hh--hhhhh
Q psy14676 646 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVE-PA--AASIL 722 (1827)
Q Consensus 646 ~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~-~~--~~~ll 722 (1827)
++++...|..++.++..+...... ..++.+ ..++...+..+...++..++.+.......... .. -+.-+
T Consensus 540 ~sgd~~~q~~Aa~AL~nLi~~~d~----~~I~~L----v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 540 KNGGPKGQEIAAKTLTKLVRTADA----ATISQL----TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred hCCCHHHHHHHHHHHHHHHhccch----hHHHHH----HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 999888999999999988654332 223333 33345555666666777776665433222211 11 24578
Q ss_pred HHHhhhhccccc--chhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhh
Q psy14676 723 PQVLQIAKSPLL--QGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREAL 800 (1827)
Q Consensus 723 p~ll~l~~s~~~--~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~ 800 (1827)
|.+.++++++.. +..|.+.+.++|. ...+..+.+ + ..
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-------~~~d~~~av---v----------------------------~a--- 650 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFS-------SRQDLCESL---A----------------------------TD--- 650 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhc-------CChHHHHHH---H----------------------------Hc---
Confidence 888888765543 4566777666651 111111110 0 00
Q ss_pred hHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHH-----HHHHHHhhhcCCCChhhHHH
Q psy14676 801 PVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTK-----LIDFLLEGLTTNKSTSTNRT 875 (1827)
Q Consensus 801 ~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~-----l~~~l~~~l~~~~~~~vr~~ 875 (1827)
..|+.++..++++.. .+|+.|..||+++.....++.-.. .++.++.-+ ++.+..+++.
T Consensus 651 gaIpPLV~LLss~~~----------------~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~ 713 (2102)
T PLN03200 651 EIINPCIKLLTNNTE----------------AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQ 713 (2102)
T ss_pred CCHHHHHHHHhcCCh----------------HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHHHH
Confidence 112345555554221 267788888888887555543322 233444434 3567789999
Q ss_pred HHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCC--ccccccccccccCCcchhhhhHH
Q psy14676 876 YIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK--EITPHIQSIGRHTDLTSVADLKQ 953 (1827)
Q Consensus 876 ~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~--~i~p~l~~i~~~~~~s~~~~L~~ 953 (1827)
++.++..+++.....-.-.-...+|.+...+++.+++.|+.|..|+..+....+. .+.-++...+- +..|-+
T Consensus 714 Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~------v~~l~~ 787 (2102)
T PLN03200 714 AVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGT------VLALVD 787 (2102)
T ss_pred HHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCc------HHHHHH
Confidence 9999999998753332222356799999999999999999999999888766542 12222211110 111111
Q ss_pred HHHhhcCCChHhH-hhhhhcccchhhHhhhhc----ccccchh---hhhhhhHHHHHHHHHhhhhccccchhhHHHHHHh
Q psy14676 954 VILNAFTPTSEEV-KSAASYTLGSIAEIISWQ----STSTSGV---AQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG 1025 (1827)
Q Consensus 954 ~l~~~~~~~~e~~-r~~~~~~lg~~~~~i~Wk----~~~~~~~---~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg 1025 (1827)
+ ++..+.+.-.+ ... +.+.|= ..+...+ ..+.+ .|.-+.-|..++....+.+++.|++.|.
T Consensus 788 ~-L~~~~~~~~~~~~al---------~~l~~l~~~~~~~~~~~~~~~~~~e-~p~~l~~l~~~l~~~~p~~~~kai~il~ 856 (2102)
T PLN03200 788 L-LNSTDLDSSATSEAL---------EALALLARTKGGANFSHPPWAVLAE-VPSSLEPLVRCLAEGHPLVQDKAIEILS 856 (2102)
T ss_pred H-HhcCCcchhhHHHHH---------HHHHHHHhhcccCCCCCCchhhHHh-ccCchHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 11111110000 000 011110 0001111 11111 1333444555567778899999999999
Q ss_pred hhcccCCC-----------CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhh
Q psy14676 1026 KLTLIDPS-----------NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASV 1094 (1827)
Q Consensus 1026 ~L~~~~~~-----------~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l 1094 (1827)
+|+.-.|. .+-..-.+.+.+++..+|.+...+|-..+.+..+...+-+++...+.+.+..++..+.+--
T Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (2102)
T PLN03200 857 RLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNS 936 (2102)
T ss_pred HHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccC
Confidence 99876432 1222233445777888888777666643333332211112222233333334433332200
Q ss_pred -----------------------cCCc----hh-h--HHHHHHHHHHHH--------------------HHhc---cCCC
Q psy14676 1095 -----------------------GDNF----YK-I--TAEALLVLQQFV--------------------KVIR---PLTS 1121 (1827)
Q Consensus 1095 -----------------------~D~~----~~-V--~~eAl~~l~~lv--------------------~~l~---~~~~ 1121 (1827)
.|.+ |. + -.-|++.+..+. +.+. +...
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q 1016 (2102)
T PLN03200 937 KKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQ 1016 (2102)
T ss_pred cccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCcc
Confidence 0000 00 0 012333333322 2110 0000
Q ss_pred -CCCCCcchhHHH--------------------HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh--------------
Q psy14676 1122 -PSSYDFAPFTSD--------------------IYQCTLVRLKAADIDQEVKERAISCMGQIICNL-------------- 1166 (1827)
Q Consensus 1122 -~~~~~~~~~l~~--------------------l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~-------------- 1166 (1827)
...+.-..|+.. .++.+-.-++ .++.-=|-.|..+++.++.+-
T Consensus 1017 ~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~ 1094 (2102)
T PLN03200 1017 AEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLK--SEETIDRYFAAQALASLVCNGSRGTLLAVANSGAV 1094 (2102)
T ss_pred ccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhh--hHHHHHHHHHHHHHHHHHHcCCcchhhhhhccccc
Confidence 000001112222 1111111111 111111333334444333321
Q ss_pred -------hh---------------hhh--h------------------hhhhhHHHHHHhhhhhh----hHHHHHHHHHH
Q psy14676 1167 -------GD---------------YLK--S------------------ELPVCLPILLDRLRNEI----TRLTTVKALTK 1200 (1827)
Q Consensus 1167 -------g~---------------~l~--~------------------~l~~lL~~Ll~~L~~e~----tR~~av~al~~ 1200 (1827)
|. .+. | .-.+.+|.|++.|++-. .|..|++.+..
T Consensus 1095 ~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~ 1174 (2102)
T PLN03200 1095 GGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQ 1174 (2102)
T ss_pred chhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 00 000 0 01345899999998654 26788877777
Q ss_pred HhcCCC----------ccc-c-------------------------c------hhhhhhHhhhhhhhcchhHHHHHHHHH
Q psy14676 1201 IAASPL----------RID-L-------------------------R------PILTDGIPILGSFLRKNQRALKLSTLL 1238 (1827)
Q Consensus 1201 ia~~~~----------~~d-l-------------------------~------p~~~~~l~~L~~~Lrk~~r~lR~~al~ 1238 (1827)
++.... ..+ + . ......+..|...|+..++..|..+..
T Consensus 1175 LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~ 1254 (2102)
T PLN03200 1175 LAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAAR 1254 (2102)
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 774210 000 0 0 001134556777788778888888888
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC--ccc----------------------
Q psy14676 1239 LLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN--ALV---------------------- 1294 (1827)
Q Consensus 1239 aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~--~~~---------------------- 1294 (1827)
+|..+...-..+ ......+.++.|..+++.........++..|-.+++..+. ...
T Consensus 1255 aL~~L~~~~~~~-~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~ 1333 (2102)
T PLN03200 1255 ALQELFSAEHIR-DSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLE 1333 (2102)
T ss_pred HHHHHHhhhhhh-hhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchh
Confidence 888876642100 0001123444445555555555555555555555553321 100
Q ss_pred -hhhHHhhhhhc-c--cccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh--------hhhhhhHHHHHHhhhcC
Q psy14676 1295 -EPAAASILPQI-G--RHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV--------GNLQQYVPFVLKEIENQ 1362 (1827)
Q Consensus 1295 -~~~i~~~lgei-G--~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~--------~~l~~~LP~Il~~i~~~ 1362 (1827)
...++.+|.-+ + +.-....-...++.++..+.++...+.+.|..+|..++. .+-.-..|.+......+
T Consensus 1334 l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS 1413 (2102)
T PLN03200 1334 LKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTN 1413 (2102)
T ss_pred HHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCC
Confidence 01122223210 1 100000012356667777777777778888888877432 11123456666333333
Q ss_pred chhhHHHHHHHHHHHhhccccccchhhhh-chHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccC--------CCcchH
Q psy14676 1363 PKRQYLLLHSLKEIISWQSTSTSGVAQLQ-QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLID--------PSNLLP 1433 (1827)
Q Consensus 1363 ~~~q~~~l~aL~Eii~~~~~s~~g~~~L~-~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~--------p~~~lP 1433 (1827)
..-+.....+|--+-. +...+-.+.++ .-+..+.-.|.. | .+..++.|++-|.-|.... .+...|
T Consensus 1414 ~~a~E~AV~aL~kl~~--~~~~v~~Emv~~G~~~kllllLQ~-c---~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~ 1487 (2102)
T PLN03200 1414 YVLHEAAISALIKLGK--DRPPCKLDMVKAGIIERVLDILPE-A---PDSLCSAIAELLRILTNNSSIAKGQSAAKVVEP 1487 (2102)
T ss_pred HHHHHHHHHHHHHHhC--CChHHHHHHHHhCHHHHHHHHHHc-C---CHHHHHHHHHHHHHhccchhhccccchhhhhHH
Confidence 3344455555533321 11000001122 133444444443 3 3558888888876665421 134567
Q ss_pred HHHHhhhcC-CHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1434 RLQESLKSN-SALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1434 ~L~~~l~~~-~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
.+..+++.. .......+++|+-.++.+ ++.. ..+. | -....+..++.+|.++++.|+
T Consensus 1488 ~~~~l~~~~~~~~~~~~al~~l~~i~e~-~~~~-~~~~-~-------------------~~~~~i~~Li~lL~s~~~~vq 1545 (2102)
T PLN03200 1488 LFLLLTRPDLGTWGQHSALQALVNILEK-PQCL-ASLT-L-------------------TPSQAIEPLIPLLESPSQAVQ 1545 (2102)
T ss_pred HHHHHhccCcceecHHHHHHHHHHHHhC-cchh-hhhh-c-------------------CccchHHHHHHHHcCCcHHHH
Confidence 777777644 222233466666655532 2211 1110 0 114577899999999999999
Q ss_pred HHHHHHhhhhhhhhhhh---hHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhh
Q psy14676 1513 NLAVKCLGPLVNKVKEF---QVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~---~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~ 1568 (1827)
..|++.++-|...-... .....|.||.+.+..++. .+|..|..+|-..
T Consensus 1546 e~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~--------~~~~~A~~aL~~~ 1596 (2102)
T PLN03200 1546 QLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGIL--------SLQQRAVKALESI 1596 (2102)
T ss_pred HHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCCh--------hHHHHHHHHHHHh
Confidence 99999999888544332 245677788887775544 8888888888433
No 12
>KOG0211|consensus
Probab=99.86 E-value=7.5e-20 Score=233.75 Aligned_cols=539 Identities=15% Similarity=0.153 Sum_probs=352.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHh
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALL 85 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll 85 (1827)
+.|.....=++++-..+.... .+.+++|++.+.+.+ +. +.+.++++=++.|.+..+. ++..++...+
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~------tr~~lipf~~e~~~~--~d----ev~~~~a~~~~~~~~~v~~~~~~~~ll~~l 164 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVER------TRLELIPFLTEAEDD--ED----EVLLDLAEQLGTFLPDVGGPEYAHMLLPPL 164 (759)
T ss_pred hhhhhhhccccchhhhcccch------hhhhhhhHHHHhccc--hh----HHHHHHHHHhcccchhccchhHHHHhhHHH
Confidence 444444444444444443333 278999999998843 22 3334444444444444433 3333333334
Q ss_pred hh-cCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch-hhHHhHHHHHHH
Q psy14676 86 PQ-LSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH-RFAEHIERVMPL 163 (1827)
Q Consensus 86 ~~-L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~-~~~p~l~~i~p~ 163 (1827)
+. ..+....||++++..+..++...++......+..++..+...++...|-.++..++..+-..++ .+. .++-|.
T Consensus 165 e~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk---~elr~~ 241 (759)
T KOG0211|consen 165 ELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK---RELRPI 241 (759)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH---HHHHHH
Confidence 44 4466789999999999999999888766666677777776555555566666666666655552 222 345566
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCccc-ccccCCCCCCCCCCCCcccCCCC
Q psy14676 164 ILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYED-EEEGLGGEGGGEGMDTEEEDGED 242 (1827)
Q Consensus 164 l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~d-dd~~~~~~~~~~~~d~~~~d~dd 242 (1827)
..+.++++.+++|..+-.-++.++...+++... ..++|...+....|.+-.-.- -+.-. ...+-++.++ | -.
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~--s~v~~~~~~L~~DdqdsVr~~a~~~~~---~l~~l~~~~~-d-~~ 314 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK--SEVLPTLIQLLRDDQDSVREAAVESLV---SLLDLLDDDD-D-VV 314 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHH--hhccHHHhhhhhcchhhHHHHHHHHHH---HHHHhcCCch-h-hh
Confidence 677777777777776666677776655543211 112222222222211100000 00000 0000000000 0 00
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccC--
Q psy14676 243 EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS-- 320 (1827)
Q Consensus 243 e~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~-- 320 (1827)
....+.-..+.+|.+|++|+..++..-.+....++ ...-....|.....+++.+|++|.++..-...+........
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~ 392 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYP 392 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccccc
Confidence 00001112355788999999999888888776654 22333556677788899999999998755444432221000
Q ss_pred CC------CCCCCCCCCCCCChHhh-------------HHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc-c
Q psy14676 321 PL------TPSDPNQMDQEDSPLCL-------------LSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG-C 380 (1827)
Q Consensus 321 ~~------~~~~~~~~~~~~~~~~~-------------l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~-~ 380 (1827)
.. |......++...+++.. ....++.+.|..+..++|..+.||....-.+..+-.+.+. .
T Consensus 393 ~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g 472 (759)
T KOG0211|consen 393 NIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG 472 (759)
T ss_pred ccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc
Confidence 00 00000011222222222 3345777788899999999999999888655555554433 3
Q ss_pred ccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhh
Q psy14676 381 LAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLI 459 (1827)
Q Consensus 381 l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f 459 (1827)
...+-+.++|++.... .|.+||+|.+.++.++.++.+.| .+|
T Consensus 473 ~~~~s~slLp~i~el~-------------------------------------~d~~wRvr~ail~~ip~la~q~~~~~~ 515 (759)
T KOG0211|consen 473 ISTVSNSLLPAIVELA-------------------------------------EDLLWRVRLAILEYIPQLALQLGVEFF 515 (759)
T ss_pred chhhhhhhhhhhhhhc-------------------------------------cchhHHHHHHHHHHHHHHHHhhhhHHh
Confidence 3566678888887774 23589999999999999999999 777
Q ss_pred hhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhh
Q psy14676 460 GDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKS 539 (1827)
Q Consensus 460 ~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~ 539 (1827)
.+. +.+.+..|+.|.++.||..|..++..++..+|..|......|+..++..+++|.+|..+.+.+..+++.++...
T Consensus 516 ~~~---~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei 592 (759)
T KOG0211|consen 516 DEK---LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI 592 (759)
T ss_pred hHH---HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH
Confidence 765 66888999999999999999999999999999999999999999988888899999999999999999998764
Q ss_pred hhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccch-hhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHH
Q psy14676 540 IRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDD-DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLF 615 (1827)
Q Consensus 540 ~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~-~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~ 615 (1827)
+...++|.+..+.+|++|||||++++-|...++- ++. .....+.+++..+..|++.+||++|..+.+.+.
T Consensus 593 --~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~----L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 593 --TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL----LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred --HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh----cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 6779999999999999999999999877766542 233 356778888888889999999999999887653
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=1.8e-13 Score=188.81 Aligned_cols=351 Identities=15% Similarity=0.123 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch--
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL-- 112 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~-- 112 (1827)
...+|.|++.+.++ +..+|..|+..|+.+...-...-.. .+...++.|.+.|.+++..+|+.|+.+|++++..-++
T Consensus 445 ~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 445 REGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred cCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 44689999999865 7899999999999887533221111 1235688888999999999999999999999974221
Q ss_pred hHH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC
Q psy14676 113 QLY--TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRC 190 (1827)
Q Consensus 113 ~~~--~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~ 190 (1827)
..+ ...++.+++.|.+. ++..++.++.+|..++...... .++.+...+..+++.++..++.+++.++...
T Consensus 524 ~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~ 595 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLSVA 595 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Confidence 112 13467777777654 6788999999999998754332 2233444456677888889998888887755
Q ss_pred CCc-cc-cc--hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHH
Q psy14676 191 PKE-IT-PH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAK 266 (1827)
Q Consensus 191 p~e-~~-p~--l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak 266 (1827)
..+ +. .. -...++.+.+.+... +-++++-|+.
T Consensus 596 ~~~d~~~~g~~~~ggL~~Lv~LL~sg--------------------------------------------s~~ikk~Aa~ 631 (2102)
T PLN03200 596 SLEDLVREGSAANDALRTLIQLLSSS--------------------------------------------KEETQEKAAS 631 (2102)
T ss_pred chhHHHHHhhhccccHHHHHHHHcCC--------------------------------------------CHHHHHHHHH
Confidence 432 11 00 012445555544321 1157888999
Q ss_pred HHHHHHHHcCCchhh-hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhH
Q psy14676 267 CLEAIIATRRDLIGD-MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVP 345 (1827)
Q Consensus 267 ~L~~l~~~~~~~l~~-~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp 345 (1827)
+|..+...+++.... +....+|.++..++..+.++|.++..+++.+.+.... .-...+ .-.
T Consensus 632 iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~----------------~q~~~~--v~~ 693 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE----------------NRKVSY--AAE 693 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH----------------HHHHHH--HHc
Confidence 999999877764333 4457789999999999999999999999999852110 000111 112
Q ss_pred HHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCC
Q psy14676 346 SLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGE 425 (1827)
Q Consensus 346 ~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~ 425 (1827)
..+|.+++.|++++.+++..+...|..+.....+.-+-.-...+|.+.+.++.
T Consensus 694 GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~--------------------------- 746 (2102)
T PLN03200 694 DAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE--------------------------- 746 (2102)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh---------------------------
Confidence 25677888889999999999999999888876543211112447778888742
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHh--hhhhHHHhhcchhhhhHH--HHHHHHHHHHh
Q psy14676 426 DDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRL--VSPPLIARFKEREENVKS--DIFHAYMALLK 494 (1827)
Q Consensus 426 ~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~--l~~~L~~~~~d~~~~Vr~--~a~~~l~~L~~ 494 (1827)
.+.+.|+.|..+|..++...+ +.|..+... .+..|+..+.-...++-. +|++.+.-+.+
T Consensus 747 ----------G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 747 ----------GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred ----------CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 134589999999999998877 446444333 467777777555443333 47777777765
No 14
>KOG0211|consensus
Probab=99.84 E-value=7.4e-19 Score=224.70 Aligned_cols=543 Identities=15% Similarity=0.146 Sum_probs=383.8
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhH
Q psy14676 873 NRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLK 952 (1827)
Q Consensus 873 r~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~ 952 (1827)
|.....-+..++.+.|...+ ..+++|++.+++ +++.++++.+-.-++.+ .++.+
T Consensus 99 r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~dev~~~~a~~~~~~--------~~~v~--------------- 152 (759)
T KOG0211|consen 99 RLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDEDEVLLDLAEQLGTF--------LPDVG--------------- 152 (759)
T ss_pred hhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchhHHHHHHHHHhccc--------chhcc---------------
Confidence 44444445556666777666 778999999998 77777766653322221 11100
Q ss_pred HHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCC
Q psy14676 953 QVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP 1032 (1827)
Q Consensus 953 ~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~ 1032 (1827)
...+...++..+...+..++.++|+.+++++.+.+...+
T Consensus 153 -----------------------------------------~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~ 191 (759)
T KOG0211|consen 153 -----------------------------------------GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLP 191 (759)
T ss_pred -----------------------------------------chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112223333444444566788999999999988776655
Q ss_pred -----CCchHHHHHHhccCChhhHHHHHHHHHHHHHhcc-ccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHH
Q psy14676 1033 -----SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQR-NDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEAL 1106 (1827)
Q Consensus 1033 -----~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~-~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl 1106 (1827)
+.++|.+.+...+.+.+.|..+|.+++..+...+ +.++. .+.|.+.+.+.|.+|+||..+.
T Consensus 192 ~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~-------------elr~~~~~lc~d~~~~Vr~~~a 258 (759)
T KOG0211|consen 192 KEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR-------------ELRPIVQSLCQDDTPMVRRAVA 258 (759)
T ss_pred hHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH-------------HHHHHHHhhccccchhhHHHHH
Confidence 3467777776677777899999999996666554 44443 4778888889999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhh
Q psy14676 1107 LVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLR 1186 (1827)
Q Consensus 1107 ~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~ 1186 (1827)
.-++.+++++.. . .....+...+..|. .|....||+.|+.++..+...+.... +....+.+.+++...
T Consensus 259 ~~l~~~a~~~~~------~----~~~s~v~~~~~~L~-~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~ 326 (759)
T KOG0211|consen 259 SNLGNIAKVLES------E----IVKSEVLPTLIQLL-RDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVE 326 (759)
T ss_pred hhhHHHHHHHHH------H----HHHhhccHHHhhhh-hcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhc
Confidence 999999998752 1 12222222223333 37778899999999999998875533 667788889998888
Q ss_pred hhhh--HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCC-cChHhHHHHHHHh
Q psy14676 1187 NEIT--RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA-ISTEMLNKVTVEL 1263 (1827)
Q Consensus 1187 ~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~-l~~~~~~~ll~~L 1263 (1827)
+..| |....+..-.+...... +....+.++.+...+++..+..|.+...-...+....... ...-..+.++|++
T Consensus 327 d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~ 403 (759)
T KOG0211|consen 327 DGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEV 403 (759)
T ss_pred ChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHH
Confidence 8877 55555554444432211 1122355677778889999999999999888888765532 1111234568899
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhh-
Q psy14676 1264 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGS- 1342 (1827)
Q Consensus 1264 ~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~- 1342 (1827)
..++.|++.|++.........+.. .+|.. .+++.+.|.++..+++..++||.+-...+..
T Consensus 404 ~~lv~d~~~~vr~a~a~~~~~~~p----------------~~~k~---~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 404 QVLVLDNALHVRSALASVITGLSP----------------ILPKE---RTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred HHHHhcccchHHHHHhccccccCc----------------cCCcC---cCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 999999999999875543322222 22211 2456799999999999999999999853322
Q ss_pred ------hhhhhhh-hhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHH-HHhhhhcCCchhHHH
Q psy14676 1343 ------IAVGNLQ-QYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWA-QLFLHCECQEEGTRN 1414 (1827)
Q Consensus 1343 ------i~~~~l~-~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~-~L~~~~~~~~e~vR~ 1414 (1827)
+|...++ ..||.|.....+ ..|++.+++.+.|+..+ .+.|. +|....+. .+...+.+....+|+
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d---~~wRvr~ail~~ip~la-~q~~~----~~~~~~~~~l~~~~l~d~v~~Ir~ 536 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAED---LLWRVRLAILEYIPQLA-LQLGV----EFFDEKLAELLRTWLPDHVYSIRE 536 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccc---hhHHHHHHHHHHHHHHH-Hhhhh----HHhhHHHHHHHHhhhhhhHHHHHH
Confidence 4544444 488999888766 58999999999998763 23342 22222222 222222333445999
Q ss_pred HHHHHHHHhhccCC-----CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccC
Q psy14676 1415 VVAECLGKLTLIDP-----SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLD 1489 (1827)
Q Consensus 1415 ~aAecLGkL~~~~p-----~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~ 1489 (1827)
.+|.++-+|+..+. ..++|++..+..++++..|.|++.++..+..--+..
T Consensus 537 ~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e------------------------- 591 (759)
T KOG0211|consen 537 AAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE------------------------- 591 (759)
T ss_pred HHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-------------------------
Confidence 99999999998775 478899999999999999999999999776432211
Q ss_pred hhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhh
Q psy14676 1490 DDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGD 1569 (1827)
Q Consensus 1490 ~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a 1569 (1827)
-....++|.+..+..|+++|||+++++.|-++.+.+.....+..|.++...+..|++. |||+.|..++.+..
T Consensus 592 -i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~-------dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 592 -ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQEL-------DVRYRAILAFGSIE 663 (759)
T ss_pred -HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCccc-------chhHHHHHHHHHHH
Confidence 1335788999999999999999999999999999999999999999999988887654 99999999998875
Q ss_pred c
Q psy14676 1570 R 1570 (1827)
Q Consensus 1570 ~ 1570 (1827)
-
T Consensus 664 l 664 (759)
T KOG0211|consen 664 L 664 (759)
T ss_pred H
Confidence 4
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.82 E-value=7.8e-16 Score=180.95 Aligned_cols=627 Identities=13% Similarity=0.141 Sum_probs=383.7
Q ss_pred ccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhcc-CCCccchhhhhhhhHHHhhhhcccccchhh-hhhHHHHHHH
Q psy14676 671 ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKI-QPNALVEPAAASILPQVLQIAKSPLLQGAA-LTSMLEFFKS 748 (1827)
Q Consensus 671 ~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~-~~~~~~~~~~~~llp~ll~l~~s~~~~~~a-l~~l~~~~~~ 748 (1827)
++++.-++|+....+.+..+.+.+++.|..++..|+.+ -|. ..||.++..+..-. ..-|..+ -...+..
T Consensus 87 ~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~----~~wp~lm~~mv~nv--g~eqp~~~k~~sl~~--- 157 (858)
T COG5215 87 MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPN----SLWPGLMEEMVRNV--GDEQPVSGKCESLGI--- 157 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcc----ccchHHHHHHHHhc--cccCchHhHHHHHHH---
Confidence 78888889999888888888899999999999988864 111 14665555554321 0000000 0111122
Q ss_pred HHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhh-----hHHHHHHHHhhccCCCchhHHHH
Q psy14676 749 LVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREAL-----PVVEKFLKELKTNKDDAHQVTIV 823 (1827)
Q Consensus 749 lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~-----~~v~~~l~~l~~~~~~~~~~~~~ 823 (1827)
.|+.|....++.+ -.+..+...-.++ ++ ++
T Consensus 158 ---------------------------------------~gy~ces~~Pe~li~~sN~il~aiv~ga~k~-et-~~---- 192 (858)
T COG5215 158 ---------------------------------------CGYHCESEAPEDLIQMSNVILFAIVMGALKN-ET-TS---- 192 (858)
T ss_pred ---------------------------------------HHHHhhccCHHHHHHHhhHHHHHHHHhhccc-Cc-hH----
Confidence 3444433333211 0011111111111 22 22
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhh-hcC---CCChhhHHHHHHHHHHHHHhccccchhhhhhhH
Q psy14676 824 ALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEG-LTT---NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 899 (1827)
Q Consensus 824 ~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~-l~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~il 899 (1827)
-+|-.|+.||.....+...++-.+-.+..+++ .+. .++..++.+++.|+..+..-++..+.+|+...+
T Consensus 193 --------avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL 264 (858)
T COG5215 193 --------AVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL 264 (858)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 28889999999988999988888877766664 333 567789999999999999999999999999966
Q ss_pred HHHH-HhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHh-hhhhcccchh
Q psy14676 900 PLIL-KYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVK-SAASYTLGSI 977 (1827)
Q Consensus 900 P~ll-~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r-~~~~~~lg~~ 977 (1827)
-.+. ..+...+++| |++|.|+|.+.|..+++--+. ++.+.+ +- +..+
T Consensus 265 ~alt~~~mks~nd~v---a~qavEfWsticeEeid~~~e------------------~~~~pe----~p~qn~~------ 313 (858)
T COG5215 265 AALTGRFMKSQNDEV---AIQAVEFWSTICEEEIDGEME------------------DKYLPE----VPAQNHG------ 313 (858)
T ss_pred HHHHHHHhcCcchHH---HHHHHHHHHHHHHHHhhhHHH------------------Hhhccc----Cchhhcc------
Confidence 6655 4455666776 789999999999887654322 000000 00 0000
Q ss_pred hHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhh---HHHHHHhhhcccCCCCc----hHHHHHHhccCChhh
Q psy14676 978 AEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN---VVAECLGKLTLIDPSNL----LPRLQESLKSNSALM 1050 (1827)
Q Consensus 978 ~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~---~a~e~Lg~L~~~~~~~l----lP~L~~~L~s~~~~~ 1050 (1827)
-...+...++|.+++.|-++=++.+++.|+ .|..||-.++...++.+ +..+.+.+++++|..
T Consensus 314 -----------fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~n 382 (858)
T COG5215 314 -----------FARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWAN 382 (858)
T ss_pred -----------hHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhh
Confidence 122345667899999888876666666664 57899988877766554 445566678999999
Q ss_pred HHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHH----hccCC-----
Q psy14676 1051 RTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKV----IRPLT----- 1120 (1827)
Q Consensus 1051 R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~----l~~~~----- 1120 (1827)
|+.++-++| .+--.+...+.++ +++.+|.+.....|+---|...+.++++.++.. +.|.+
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~----------V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~ 452 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKI----------VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLE 452 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhh----------HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHH
Confidence 999999999 4444455566666 999999999888887755544444444443332 33221
Q ss_pred ---------------------------------CCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Q psy14676 1121 ---------------------------------SPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLG 1167 (1827)
Q Consensus 1121 ---------------------------------~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g 1167 (1827)
.+....+.+|...|+..++......+.+...|-++.++||.++....
T Consensus 453 vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~ 532 (858)
T COG5215 453 VSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP 532 (858)
T ss_pred HHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc
Confidence 01112234555666666666555556778899999999999999887
Q ss_pred hhhhhhhhhhHHHHHHhhhhh-----------hh------HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchh-
Q psy14676 1168 DYLKSELPVCLPILLDRLRNE-----------IT------RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ- 1229 (1827)
Q Consensus 1168 ~~l~~~l~~lL~~Ll~~L~~e-----------~t------R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~- 1229 (1827)
+.+.+.+..++...++++... +. ..--+..+..|.... +-|.++.-..++..+.+.+.+.+
T Consensus 533 d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~-~~~ie~v~D~lm~Lf~r~les~~~ 611 (858)
T COG5215 533 DAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR-RRDIEDVEDQLMELFIRILESTKP 611 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccHHHHHHHHHHHHHhccCC
Confidence 766665555555555554432 11 111222334343322 23445444556777777776653
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhccccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHT 1309 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~ 1309 (1827)
..+-.-.+.+++.+..+.+.++. .+...++|.|.+-++..|..+...+.+.++.++......+ -+
T Consensus 612 t~~~~dV~~aIsal~~sl~e~Fe-~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df------------~~-- 676 (858)
T COG5215 612 TTAFGDVYTAISALSTSLEERFE-QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF------------NI-- 676 (858)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH------------HH--
Confidence 34556677788877776444332 3677889999999999999999999999998887432111 11
Q ss_pred CCCchhhHHHHHHHhcCCC--CHhHHHHHHHHHhhhhh---hhhhhhHHHHHHhhhc----Cc--------hhhHHHHHH
Q psy14676 1310 DLTSVADLKQVILNAFTPT--SEEVKSAASYTLGSIAV---GNLQQYVPFVLKEIEN----QP--------KRQYLLLHS 1372 (1827)
Q Consensus 1310 ~~~~~~~l~~~~l~~~~~~--s~eVr~aAa~aLG~i~~---~~l~~~LP~Il~~i~~----~~--------~~q~~~l~a 1372 (1827)
.-..++..+.+++.++ ..++|-+.....|+|+. .++.+||-.|+-.... +| ..|-.++..
T Consensus 677 ---y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~ 753 (858)
T COG5215 677 ---YADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL 753 (858)
T ss_pred ---HHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH
Confidence 1145777778888765 45677777777787653 3788899888765432 11 122222333
Q ss_pred HHHHHhhcc-ccccchhhhhchHHHHHHHHhhhhcCCc--hhHHHHHHHHHHHhhccCCCc
Q psy14676 1373 LKEIISWQS-TSTSGVAQLQQFVPAIWAQLFLHCECQE--EGTRNVVAECLGKLTLIDPSN 1430 (1827)
Q Consensus 1373 L~Eii~~~~-~s~~g~~~L~~~~~~i~~~L~~~~~~~~--e~vR~~aAecLGkL~~~~p~~ 1430 (1827)
+-+....+. .+.--...+-||+..|+..+-...++.+ |.--+.+-.-+|-|+-.+|..
T Consensus 754 v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 754 VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCc
Confidence 322221111 1100023456888887766654333322 222234446677777777753
No 16
>KOG1242|consensus
Probab=99.82 E-value=4.1e-17 Score=198.43 Aligned_cols=533 Identities=13% Similarity=0.117 Sum_probs=359.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc
Q psy14676 89 SSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS 168 (1827)
Q Consensus 89 ~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~ 168 (1827)
.|+++.||+.-..|........+++...++++-.-+.|.+.....+|+..+-..|.++++.... .|....++..++..+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~-d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV-DPRPISIIEILLEEL 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc-CcchhHHHHHHHHhc
Confidence 6788999999999999999988888888888877788876556778999999999999987632 223445666777777
Q ss_pred ccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCC
Q psy14676 169 REEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN 248 (1827)
Q Consensus 169 ~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~ 248 (1827)
......+|+....++..+.-.....- -..+.+.+.+.+.- +
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~-~----------------------------------- 146 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTS-T----------------------------------- 146 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhcc-c-----------------------------------
Confidence 77777777654444433332211110 11233333333321 0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHcCC-chhhhHHhhhHHHHhhcCCCCHhH-HHHHHHHHHHHHhhhcccCCCCCCC
Q psy14676 249 EYSDDDDMSWKVRRAAAKCLEAIIATRRD-LIGDMYRLVSPPLIARFKEREENV-KSDIFHAYMALLKGTRTFSPLTPSD 326 (1827)
Q Consensus 249 e~sdddD~sWkVRraAak~L~~l~~~~~~-~l~~~~~~v~p~L~~~l~e~ee~V-R~aa~~al~~ll~~~~~~~~~~~~~ 326 (1827)
+..-|+.++..+..+....+. .+.+ ..++..|....++.+..- |..+..++.......+
T Consensus 147 --------~~~~~~~aa~~~ag~v~g~~i~~~~~--~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--------- 207 (569)
T KOG1242|consen 147 --------KIAERAGAAYGLAGLVNGLGIESLKE--FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--------- 207 (569)
T ss_pred --------cHHHHhhhhHHHHHHHcCcHHhhhhh--hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---------
Confidence 012355677777777765442 1221 123444555555555544 4456666665554433
Q ss_pred CCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc-cccCchhhHHHHHHHHhhhhhcccCC
Q psy14676 327 PNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG-CLAPSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 327 ~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~-~l~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
...++++..++|.++....|+.+.||+++......+..+++. .....++++++.+...
T Consensus 208 -----------~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~---------- 266 (569)
T KOG1242|consen 208 -----------PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA---------- 266 (569)
T ss_pred -----------CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----------
Confidence 223678889999999999999999999999999999998865 4444445544443332
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDI 485 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a 485 (1827)
.||-+.++++.++.++...+..+.-+++.++|.+...+.|.++.||.++
T Consensus 267 -------------------------------kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~ 315 (569)
T KOG1242|consen 267 -------------------------------KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAG 315 (569)
T ss_pred -------------------------------hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccc
Q psy14676 486 FHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMA 565 (1827)
Q Consensus 486 ~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a 565 (1827)
..++..+.+...- . ..+.++|.+.+.+.||.....
T Consensus 316 ~~~l~~~~svidN-----------------------~-------------------dI~~~ip~Lld~l~dp~~~~~--- 350 (569)
T KOG1242|consen 316 IETLLKFGSVIDN-----------------------P-------------------DIQKIIPTLLDALADPSCYTP--- 350 (569)
T ss_pred HHHHHHHHHhhcc-----------------------H-------------------HHHHHHHHHHHHhcCcccchH---
Confidence 9998888765430 1 123344555555555532111
Q ss_pred hHHHHHHHhhhccc-cchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhh
Q psy14676 566 TNDLMSELQKDSIK-LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSF 644 (1827)
Q Consensus 566 ~~dl~~~~~~~~~~-~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~ 644 (1827)
..+..+.+...++ .++...+.++|.|.+.+++++.+.+..+...+|.+++-+.+ ..+++||+|+++|-|-..
T Consensus 351 -e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD------p~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 351 -ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED------PKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred -HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC------HHHHhhhHHHHhhHHHHH
Confidence 2223333323333 45678899999999999999999999999999999988854 267889998888876644
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHH
Q psy14676 645 LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQ 724 (1827)
Q Consensus 645 l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ 724 (1827)
+... ++.++..+...++.+.+-- .+...+.++|.
T Consensus 424 ~~d~------------------------------------------~PEvR~vaarAL~~l~e~~----g~~~f~d~~p~ 457 (569)
T KOG1242|consen 424 LDDA------------------------------------------VPEVRAVAARALGALLERL----GEVSFDDLIPE 457 (569)
T ss_pred hcCC------------------------------------------ChhHHHHHHHHHHHHHHHH----HhhcccccccH
Confidence 3222 2333333333333222100 00012334444
Q ss_pred HhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHH
Q psy14676 725 VLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVE 804 (1827)
Q Consensus 725 ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~ 804 (1827)
+.+...+....
T Consensus 458 l~e~~~~~k~~--------------------------------------------------------------------- 468 (569)
T KOG1242|consen 458 LSETLTSEKSL--------------------------------------------------------------------- 468 (569)
T ss_pred HHHhhccchhh---------------------------------------------------------------------
Confidence 43221000000
Q ss_pred HHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcC-CCChhhHHHHHHHHHHH
Q psy14676 805 KFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAI 883 (1827)
Q Consensus 805 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~-~~~~~vr~~~l~~l~~L 883 (1827)
.-|..+.+.|+.+....+.+.+.++++.++....+ ..++.+|.+++..+..+
T Consensus 469 ---------------------------~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~l 521 (569)
T KOG1242|consen 469 ---------------------------VDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLL 521 (569)
T ss_pred ---------------------------hhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhcc
Confidence 02223445566666666667777777777776544 45778999999999999
Q ss_pred HHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHh
Q psy14676 884 CRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 926 (1827)
Q Consensus 884 ~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~ 926 (1827)
+...+.+|.+|+.++++.+++.+.|.++.+|.+++++.+..+.
T Consensus 522 p~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~~~~~~ 564 (569)
T KOG1242|consen 522 PYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAGEVEVL 564 (569)
T ss_pred chhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhhhhhhc
Confidence 9999999999999999999999999999999999888776543
No 17
>KOG0213|consensus
Probab=99.77 E-value=6.7e-14 Score=168.68 Aligned_cols=637 Identities=17% Similarity=0.224 Sum_probs=395.0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhH
Q psy14676 261 RRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLL 340 (1827)
Q Consensus 261 RraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l 340 (1827)
|.-..+.++.+.-...++..||.+.|+=++-.++-+++.-.|...-..++.|.+..|-+
T Consensus 417 rhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla--------------------- 475 (1172)
T KOG0213|consen 417 RHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA--------------------- 475 (1172)
T ss_pred hhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhH---------------------
Confidence 66688999999988888888888887655555555666777777766666666544321
Q ss_pred HhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCC
Q psy14676 341 STQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDG 420 (1827)
Q Consensus 341 ~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~ 420 (1827)
.++..+-.-....++=||....+.++..+..++ ++.++|.+..++..
T Consensus 476 -----~mistmrpDidn~deYVRnttarafavvasalg------ip~llpfLkavc~S---------------------- 522 (1172)
T KOG0213|consen 476 -----TMISTMRPDIDNKDEYVRNTTARAFAVVASALG------IPALLPFLKAVCGS---------------------- 522 (1172)
T ss_pred -----HHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC------cHHHHHHHHHHhcc----------------------
Confidence 111111111223556688877777777777665 47888888888732
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCC
Q psy14676 421 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS 500 (1827)
Q Consensus 421 ~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~ 500 (1827)
.++|.-|+.-++|++.++.-.|-...||+..++..+-..+.|....||..+..++..|.+..+
T Consensus 523 --------------kkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~--- 585 (1172)
T KOG0213|consen 523 --------------KKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAAT--- 585 (1172)
T ss_pred --------------ccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcC---
Confidence 258999999999999999999999999999999999999999999999999998888887655
Q ss_pred CCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhcccc
Q psy14676 501 PLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKL 580 (1827)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~ 580 (1827)
|. .+ .+...+++-|-+..+. .++..+..+++.++...|.-+- + -
T Consensus 586 Py---------------gi--e~fDsVlkpLwkgir~----hrgk~laafLkAigyliplmd~--------e-------y 629 (1172)
T KOG0213|consen 586 PY---------------GI--EQFDSVLKPLWKGIRQ----HRGKELAAFLKAIGYLIPLMDA--------E-------Y 629 (1172)
T ss_pred Cc---------------ch--HHHHHHHHHHHHHHHH----ccChHHHHHHHHHhhccccccH--------H-------H
Confidence 22 10 1123344444433333 3444445444444433222110 0 0
Q ss_pred chhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHH
Q psy14676 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLL 660 (1827)
Q Consensus 581 d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l 660 (1827)
-..+..+++-.+.+=.+-+|.|++..-.+.+.+++..-+
T Consensus 630 a~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~G----------------------------------------- 668 (1172)
T KOG0213|consen 630 ASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDG----------------------------------------- 668 (1172)
T ss_pred HHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC-----------------------------------------
Confidence 012345566666666777777776655544433321111
Q ss_pred HHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhh--hhhhHHHhhhhcccccchhh
Q psy14676 661 DTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAA--ASILPQVLQIAKSPLLQGAA 738 (1827)
Q Consensus 661 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~--~~llp~ll~l~~s~~~~~~a 738 (1827)
+.+.| .+++|..+. +.-.+..|
T Consensus 669 -----------------------------------------------------v~~~y~r~dilp~ff~---~fw~rrmA 692 (1172)
T KOG0213|consen 669 -----------------------------------------------------VEPAYIRFDILPEFFF---SFWGRRMA 692 (1172)
T ss_pred -----------------------------------------------------CCHHHHhhhhhHHHHh---hhhhhhhh
Confidence 11111 234444331 11111111
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCch
Q psy14676 739 LTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAH 818 (1827)
Q Consensus 739 l~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~ 818 (1827)
++ ...|.++++.-. +++..+|. .+.|.+++..+.+ .+.
T Consensus 693 ~d---------------rr~ykqlv~ttv---------------~ia~KvG~---------~~~v~R~v~~lkd---e~e 730 (1172)
T KOG0213|consen 693 LD---------------RRNYKQLVDTTV---------------EIAAKVGS---------DPIVSRVVLDLKD---EPE 730 (1172)
T ss_pred cc---------------ccchhhHHHHHH---------------HHHHHhCc---------hHHHHHHhhhhcc---ccH
Confidence 11 111222211100 22222222 2344445555543 111
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHH-HHHHHHHHHHh----hhcCCCChhhHHHHHHHHHHHHHhccccchh
Q psy14676 819 QVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQ-LYTKLIDFLLE----GLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 893 (1827)
Q Consensus 819 ~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~-~~~~l~~~l~~----~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~ 893 (1827)
+.|+.+..+.+-++..++.. +=..+.+.++. .++.+... -.-.+..|+.++..++.+..|
T Consensus 731 -------------~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~--d~vml~gfg~V~~~lg~r~kp 795 (1172)
T KOG0213|consen 731 -------------QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE--DSVMLLGFGTVVNALGGRVKP 795 (1172)
T ss_pred -------------HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc--hhhhhhhHHHHHHHHhhcccc
Confidence 26677777766666655432 22333334444 44432221 225678999999999999999
Q ss_pred hhhhhHHHHHHhhcccchHHHHHHHHHHHHHHh---hCCCc-cccccccccccCCcchhhhhHHHHHhhcCCChHhHhhh
Q psy14676 894 HIERVMPLILKYSREEDDELREFCLQACEAFVQ---RCPKE-ITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSA 969 (1827)
Q Consensus 894 yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~---~~~~~-i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~ 969 (1827)
|++.|+-.++.-|+...+.+|+-|...+..+.. .|+.+ +--|++-+ |..
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv---------------LyE------------ 848 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV---------------LYE------------ 848 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH---------------HHH------------
Confidence 999999999999999999999888666554321 12111 11111100 000
Q ss_pred hhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChh
Q psy14676 970 ASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSAL 1049 (1827)
Q Consensus 970 ~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~ 1049 (1827)
.+..+. +.++|.|+
T Consensus 849 --------------------------------------ylgeey-------------------pEvLgsIL--------- 862 (1172)
T KOG0213|consen 849 --------------------------------------YLGEEY-------------------PEVLGSIL--------- 862 (1172)
T ss_pred --------------------------------------hcCccc-------------------HHHHHHHH---------
Confidence 000000 11222222
Q ss_pred hHHHHHHHHHHHHH-hccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCC--C
Q psy14676 1050 MRTTHQSNQTFNVI-IQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSY--D 1126 (1827)
Q Consensus 1050 ~R~~a~~~L~~l~~-~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~--~ 1126 (1827)
.+++++++ ++-....|= +..|+|.+...++....||...+...+|.++.. +++ .
T Consensus 863 ------gAikaI~nvigm~km~pP----------i~dllPrltPILknrheKVqen~IdLvg~Iadr-------gpE~v~ 919 (1172)
T KOG0213|consen 863 ------GAIKAIVNVIGMTKMTPP----------IKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-------GPEYVS 919 (1172)
T ss_pred ------HHHHHHHHhccccccCCC----------hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-------CcccCC
Confidence 22232222 222223333 667888888888999999999999988888853 111 1
Q ss_pred cchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcC
Q psy14676 1127 FAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAAS 1204 (1827)
Q Consensus 1127 ~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~ 1204 (1827)
.+.|+.-+|. +++.|. ....++|++|..++|.+.+..|. +.+|..|++.|+-+.- |..+.-|++.+++.
T Consensus 920 aREWMRIcfe-LlelLk--ahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~ 990 (1172)
T KOG0213|consen 920 AREWMRICFE-LLELLK--AHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAET 990 (1172)
T ss_pred HHHHHHHHHH-HHHHHH--HHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhh
Confidence 2356666665 556666 44679999999999999999886 4678888888876543 88888888888875
Q ss_pred CCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHH
Q psy14676 1205 PLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTS 1284 (1827)
Q Consensus 1205 ~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~ 1284 (1827)
. .|| .++|.|..--|-.+-.+....+.++..+....+. .+.+++-.+.|-|...+.|.|+.-|+.+..++..
T Consensus 991 c-----~pF--tVLPalmneYrtPe~nVQnGVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 991 C-----GPF--TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKH 1062 (1172)
T ss_pred c-----Cch--hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHH
Confidence 3 223 3577777777778888999999999998886554 4556777888888889999999999999999998
Q ss_pred HHHhCCC
Q psy14676 1285 IAKIQPN 1291 (1827)
Q Consensus 1285 l~~~~~~ 1291 (1827)
++...+.
T Consensus 1063 l~Lg~~g 1069 (1172)
T KOG0213|consen 1063 LALGVPG 1069 (1172)
T ss_pred HhcCCCC
Confidence 8876553
No 18
>KOG0915|consensus
Probab=99.74 E-value=1.1e-14 Score=188.59 Aligned_cols=333 Identities=16% Similarity=0.200 Sum_probs=236.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCC--CCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGAL--LPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLI 119 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~--l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~ 119 (1827)
|...+. +++|+.|.+++--|=.+..++|.+ +.....+|+.++...|++.+.-++.-|...+|-+=+.-....-..++
T Consensus 823 l~~~~~-s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV 901 (1702)
T KOG0915|consen 823 LDTLLT-SPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLV 901 (1702)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHH
Confidence 334444 468999999999988888888843 44456799999999999999999999999988766654444445566
Q ss_pred HHHHHhccCC--------C------------CHH-HHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC-chHHHH
Q psy14676 120 DFLLEGLTTN--------K------------STS-TNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-DDELRE 177 (1827)
Q Consensus 120 ~~ll~~L~~~--------~------------~~~-~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~-~delRe 177 (1827)
+.|+..|... + +++ -.-+..+=+.++|.-.++. +++=-+++..+.. .=--|.
T Consensus 902 ~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP------dLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 902 DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP------DLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh------HHHHHHHHHhhhhchhhccc
Confidence 6666665210 0 010 0112223344444443321 1111122222211 000134
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccch
Q psy14676 178 FCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS 257 (1827)
Q Consensus 178 ~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~s 257 (1827)
.|.-+|.++..+.++.+.||++.+||.+.+| +|||+.
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~~------------------------------------------ 1012 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPDK------------------------------------------ 1012 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCcH------------------------------------------
Confidence 5556688889999999999999999999998 788764
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChH
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPL 337 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1827)
+|+++.+.-.++++.-....+..||..|+..|+..+.++||.||.+++.|+..+++. .+.
T Consensus 1013 -~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g-------------------~~~ 1072 (1702)
T KOG0915|consen 1013 -KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG-------------------RPF 1072 (1702)
T ss_pred -HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC-------------------CCh
Confidence 688888888888887666788899999999999999999999999999999999953 133
Q ss_pred hhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC---ccc-----ccCchhhHHHHHHHHhhhhhcccCCCCCC
Q psy14676 338 CLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTL---PGC-----LAPSLPALIPDVTSVAEWDEEEGLGGEGG 409 (1827)
Q Consensus 338 ~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl---~~~-----l~~~l~~Llp~i~~~L~~~~~~~~~~~~~ 409 (1827)
..+...+|.+..++.+.+.|-...||.++-.+...+.... .+. -...+..++|.+..- ..
T Consensus 1073 ~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~------------gi 1140 (1702)
T KOG0915|consen 1073 DQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDE------------GI 1140 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhcc------------Cc
Confidence 5678889999999999999988899998777766665443 221 123445555553221 11
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhh
Q psy14676 410 GEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREEN 480 (1827)
Q Consensus 410 ~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~ 480 (1827)
|+ ..-.+|+.++..+..++++.|..+.||+++|+|.|+..+..-++.
T Consensus 1141 ---ms---------------------~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1141 ---MS---------------------KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred ---cc---------------------chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchH
Confidence 11 112399999999999999999999999999999999887766553
No 19
>KOG0213|consensus
Probab=99.74 E-value=8.1e-13 Score=159.51 Aligned_cols=647 Identities=15% Similarity=0.203 Sum_probs=404.6
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhh
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQ 87 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~ 87 (1827)
+|...+-|..++++.|. ...|+|+|-....+..++.-|..++.|..+++.-.|-.+-+|...++.++-.+
T Consensus 492 VRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 492 VRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred HHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 44444444444444442 25577877655555558999999999999999999998888888999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhch---hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH-HHHHH
Q psy14676 88 LSSPRQAVRKRTIVALSHLVMSCNL---QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE-RVMPL 163 (1827)
Q Consensus 88 L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~-~i~p~ 163 (1827)
|.|.+..||--+..|++.+++...+ +.|+.++..|.+++.++... .-...+.++|.++-........|+. ++|-.
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmli 640 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLI 640 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHH
Confidence 9999999999999999999998765 46777888888887664332 2344556666665444444444443 66666
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHhCCCcccc-ch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCC
Q psy14676 164 ILKYSREEDDELREFCLQACEAFVQRCPKEITP-HI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGE 241 (1827)
Q Consensus 164 l~~~~~~~~delRe~al~ale~~~~~~p~e~~p-~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~d 241 (1827)
+..-...+|+|.+...+-.++..+..-+ +.| |+ ..++|..++..
T Consensus 641 l~rEf~sPDeemkkivLKVv~qcc~t~G--v~~~y~r~dilp~ff~~f-------------------------------- 686 (1172)
T KOG0213|consen 641 LIREFGSPDEEMKKIVLKVVKQCCATDG--VEPAYIRFDILPEFFFSF-------------------------------- 686 (1172)
T ss_pred HHHhhCCChHHHHHHHHHHHHHHhcccC--CCHHHHhhhhhHHHHhhh--------------------------------
Confidence 6666666788877655443332222111 111 21 23444444321
Q ss_pred CCCCCCCCCCCCccchhhHHHHHH---------HHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy14676 242 DEGEDDNEYSDDDDMSWKVRRAAA---------KCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 242 de~e~~~e~sdddD~sWkVRraAa---------k~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~l 312 (1827)
|. ||.|. ..--.++...|- ..++.-++.-+++..|..|.-+..+...+
T Consensus 687 ----------------w~-rrmA~drr~ykqlv~ttv~ia~KvG~------~~~v~R~v~~lkde~e~yrkm~~etv~ri 743 (1172)
T KOG0213|consen 687 ----------------WG-RRMALDRRNYKQLVDTTVEIAAKVGS------DPIVSRVVLDLKDEPEQYRKMVAETVSRI 743 (1172)
T ss_pred ----------------hh-hhhhccccchhhHHHHHHHHHHHhCc------hHHHHHHhhhhccccHHHHHHHHHHHHHH
Confidence 21 22211 111123333231 12233344556788888999999888888
Q ss_pred HhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHH
Q psy14676 313 LKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392 (1827)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i 392 (1827)
+...+... .--..-+..+..|+-++..+ ...+. ..+..|+.++..+++-..+|+++|+..+
T Consensus 744 ~~~lg~~d--------------iderleE~lidgil~Afqeq----tt~d~-vml~gfg~V~~~lg~r~kpylpqi~sti 804 (1172)
T KOG0213|consen 744 VGRLGAAD--------------IDERLEERLIDGILYAFQEQ----TTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTI 804 (1172)
T ss_pred Hhcccccc--------------ccHHHHHHHHHHHHHHHHhc----ccchh-hhhhhHHHHHHHHhhccccchHHHHHHH
Confidence 75443211 00122233444444444443 22222 3455567888888888899999999999
Q ss_pred HHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh-hhhhHHhhhhhHH
Q psy14676 393 TSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-IGDMYRLVSPPLI 471 (1827)
Q Consensus 393 ~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~-f~~~~~~l~~~L~ 471 (1827)
+..|+. ++-++|..|++.++.++.....- =...+.++--.|.
T Consensus 805 L~rLnn-------------------------------------ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLy 847 (1172)
T KOG0213|consen 805 LWRLNN-------------------------------------KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLY 847 (1172)
T ss_pred HHHhcC-------------------------------------CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHH
Confidence 999843 34569999999999888554411 0112344556678
Q ss_pred HhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHH
Q psy14676 472 ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLR 551 (1827)
Q Consensus 472 ~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~ 551 (1827)
..+++.|++|--..+..+..+..+.|.++-. +-+..++.++..+++....|....|+..+.
T Consensus 848 EylgeeypEvLgsILgAikaI~nvigm~km~-------------------pPi~dllPrltPILknrheKVqen~IdLvg 908 (1172)
T KOG0213|consen 848 EYLGEEYPEVLGSILGAIKAIVNVIGMTKMT-------------------PPIKDLLPRLTPILKNRHEKVQENCIDLVG 908 (1172)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHhccccccC-------------------CChhhhcccchHhhhhhHHHHHHHHHHHHH
Confidence 8899999999999999999999999854322 112355666777777777777777776553
Q ss_pred HhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCccccccc
Q psy14676 552 ELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLR 631 (1827)
Q Consensus 552 ~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~ 631 (1827)
. +.|.-|. |.....-+.+ -=-|+.+|.--+.++|..|+..+|-++|++|.
T Consensus 909 ~-IadrgpE--~v~aREWMRI----------------cfeLlelLkahkK~iRRaa~nTfG~IakaIGP----------- 958 (1172)
T KOG0213|consen 909 T-IADRGPE--YVSAREWMRI----------------CFELLELLKAHKKEIRRAAVNTFGYIAKAIGP----------- 958 (1172)
T ss_pred H-HHhcCcc--cCCHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH-----------
Confidence 2 2233232 3322222111 11245566667789999999999999999997
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCC
Q psy14676 632 PILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 711 (1827)
Q Consensus 632 ~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~ 711 (1827)
.+++-.|...|+-+.|+.|.++-.++.-+- +.+.
T Consensus 959 ---qdVLatLlnnLkvqeRq~RvcTtvaIaIVa-----------------E~c~-------------------------- 992 (1172)
T KOG0213|consen 959 ---QDVLATLLNNLKVQERQNRVCTTVAIAIVA-----------------ETCG-------------------------- 992 (1172)
T ss_pred ---HHHHHHHHhcchHHHHHhchhhhhhhhhhh-----------------hhcC--------------------------
Confidence 235677888888899888887544443331 1100
Q ss_pred ccchhhhhhhhHHHhhhhc--ccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHH
Q psy14676 712 ALVEPAAASILPQVLQIAK--SPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVA 789 (1827)
Q Consensus 712 ~~~~~~~~~llp~ll~l~~--s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g 789 (1827)
-=.++|.+++=-. .-.+|-+-|.+|-.+|.-+- +.++.+.+.+.+.|...++.....|+|.-.++++-++
T Consensus 993 ------pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyig--emskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 993 ------PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIG--EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred ------chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH--HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 0124566555222 22345666777777775443 2455666777777776665554455554333333111
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCC
Q psy14676 790 ALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKS 869 (1827)
Q Consensus 790 ~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 869 (1827)
. + ...+-.++.+.++++.+...+- +++
T Consensus 1065 L---------------------------------------------------g-~~g~g~eda~iHLLN~iWpNIl-e~s 1091 (1172)
T KOG0213|consen 1065 L---------------------------------------------------G-VPGTGCEDALIHLLNLIWPNIL-ETS 1091 (1172)
T ss_pred c---------------------------------------------------C-CCCcCcHHHHHHHHHHhhhhhc-CCC
Confidence 1 0 1112234455555555444332 468
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcccccccccc
Q psy14676 870 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIG 940 (1827)
Q Consensus 870 ~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~ 940 (1827)
|++...+..++..+..+.|. ..++.+++++|=.....||+.-+...+.+--.....+.+++|.+.
T Consensus 1092 Phviqa~~e~~eg~r~~Lg~------~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dalv~~ypv~e 1156 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVALGP------QAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDALVACYPVEE 1156 (1172)
T ss_pred hHHHHHHHHHHHHHHHHhch------HHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchhhhccccCC
Confidence 89999999999999999886 567888888888888889999888887766666666777776443
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.66 E-value=5.8e-13 Score=158.04 Aligned_cols=537 Identities=15% Similarity=0.175 Sum_probs=327.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCC
Q psy14676 436 MSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDS 515 (1827)
Q Consensus 436 ~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~ 515 (1827)
++|.-|+.-+.|+++++.-.|....+|+..++..+-.++.|++..||..+..++.-|.+..| |.
T Consensus 329 kSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~---Py------------- 392 (975)
T COG5181 329 KSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVG---PY------------- 392 (975)
T ss_pred cchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcC---Cc-------------
Confidence 58999999999999999999988889999999999999999999999999999888887765 22
Q ss_pred ccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHH
Q psy14676 516 PVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL 595 (1827)
Q Consensus 516 ~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~ 595 (1827)
. ...+..+.+-+.+...+.++..+..+++.++...| .|..+ --.+...+.+..+++.
T Consensus 393 --g------ie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iip---lm~pe------------Ya~h~tre~m~iv~re 449 (975)
T COG5181 393 --G------IEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIP---LMSPE------------YACHDTREHMEIVFRE 449 (975)
T ss_pred --c------hHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccc---cCChH------------hhhhhHHHHHHHHHHH
Confidence 1 12344444555555555566666666666654333 11110 0013456788888888
Q ss_pred hhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHH
Q psy14676 596 LEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEM 675 (1827)
Q Consensus 596 l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~ 675 (1827)
++.++.+.+..-...+..+.+ + + ++.+.-
T Consensus 450 f~spdeemkk~~l~v~~~C~~-v-------------------------------------------------~-~~tp~~ 478 (975)
T COG5181 450 FKSPDEEMKKDLLVVERICDK-V-------------------------------------------------G-TDTPWK 478 (975)
T ss_pred hCCchhhcchhHHHHHHHHhc-c-------------------------------------------------C-CCCHHH
Confidence 888887655432221111100 0 0 000000
Q ss_pred HHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCC
Q psy14676 676 LNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELP 755 (1827)
Q Consensus 676 ~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~ 755 (1827)
-..++.|.+.+- ||.-=+ ...
T Consensus 479 -----------------------------------------lr~~v~pefF~~----------------fw~rr~--A~d 499 (975)
T COG5181 479 -----------------------------------------LRDQVSPEFFSP----------------FWRRRS--AGD 499 (975)
T ss_pred -----------------------------------------HHHhhcHHhhch----------------HHHhhh--ccc
Confidence 001122222110 000000 000
Q ss_pred CCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhH
Q psy14676 756 GLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQ 835 (1827)
Q Consensus 756 ~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 835 (1827)
...+ ||.... ..+-+..-....+++|++.-+++-+++ .|+
T Consensus 500 r~~~------------------k~v~~t------tvilAk~~g~~~v~~kil~~~~De~ep----------------~r~ 539 (975)
T COG5181 500 RRSY------------------KQVVLT------TVILAKMGGDPRVSRKILEYYSDEPEP----------------YRK 539 (975)
T ss_pred cccc------------------ceeehh------HHHHHHHcCChHHHHHHHhhccCCcch----------------hhh
Confidence 0000 000000 000001111234556777777652222 566
Q ss_pred HHHHHHHHHHhhhcH-----HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccc
Q psy14676 836 LTIVALSHLVMSCNL-----QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREED 910 (1827)
Q Consensus 836 ~Ai~aL~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~ 910 (1827)
.+..+.+-++..++. .+-..+...++-.++.+. ..-.-++.+|+.+..+.+-+..||++.|+..+++-|....
T Consensus 540 m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~--~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~ 617 (975)
T COG5181 540 MNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD--TTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKP 617 (975)
T ss_pred hhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc--ccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCC
Confidence 666666555554442 222333333333443321 2234466788888888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHh---hCCC-ccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhccc
Q psy14676 911 DELREFCLQACEAFVQ---RCPK-EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQST 986 (1827)
Q Consensus 911 ~~vre~al~Ale~~v~---~~~~-~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~ 986 (1827)
+.+|+-|...++.+.. .|+. +...+++- +
T Consensus 618 p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~---------------i-------------------------------- 650 (975)
T COG5181 618 PDVRIRAADLMGSLAKVLKACGETKELAKLGN---------------I-------------------------------- 650 (975)
T ss_pred ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH---------------H--------------------------------
Confidence 9999888776665321 1211 01111110 0
Q ss_pred ccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHH-Hhc
Q psy14676 987 STSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNV-IIQ 1065 (1827)
Q Consensus 987 ~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~-~~~ 1065 (1827)
| .|.||+- .+.++|.+++ ++..++ .+.
T Consensus 651 ------------------L---------------yE~lge~----ypEvLgsil~---------------Ai~~I~sv~~ 678 (975)
T COG5181 651 ------------------L---------------YENLGED----YPEVLGSILK---------------AICSIYSVHR 678 (975)
T ss_pred ------------------H---------------HHhcCcc----cHHHHHHHHH---------------HHHHHhhhhc
Confidence 0 0001000 0112222222 222222 233
Q ss_pred cccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhc
Q psy14676 1066 RNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAA 1145 (1827)
Q Consensus 1066 ~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~ 1145 (1827)
-..++|- +..|+|.+...++....||.......++.+.+. .| .--..+.|+.-.|. +++.|.
T Consensus 679 ~~~mqpP----------i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~-~p----eyi~~rEWMRIcfe-Lvd~Lk-- 740 (975)
T COG5181 679 FRSMQPP----------ISGILPSLTPILRNKHQKVVANTIALVGTICMN-SP----EYIGVREWMRICFE-LVDSLK-- 740 (975)
T ss_pred ccccCCc----------hhhccccccHhhhhhhHHHhhhHHHHHHHHHhc-Cc----ccCCHHHHHHHHHH-HHHHHH--
Confidence 3445565 778888888889999999999888888887753 11 11123456666665 556666
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGS 1223 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~ 1223 (1827)
..+.|+|+.|..++|-+....|. +.+|.+|++.|+-+. .|..+.-|++.+++... || .++|.|.+
T Consensus 741 s~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-----pf--sVlP~lm~ 807 (975)
T COG5181 741 SWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-----PF--SVLPTLMS 807 (975)
T ss_pred HhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-----ch--hhHHHHHh
Confidence 56789999999999999998886 568888999987654 38888888888887532 22 35787777
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccc
Q psy14676 1224 FLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALV 1294 (1827)
Q Consensus 1224 ~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~ 1294 (1827)
--+-.+..+....+.|+..+....+.+ +-+++-.+.|-|...+.|.|+.-|+.+.+.+..++..+|....
T Consensus 808 dY~TPe~nVQnGvLkam~fmFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~ 877 (975)
T COG5181 808 DYETPEANVQNGVLKAMCFMFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD 877 (975)
T ss_pred cccCchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc
Confidence 777788889999999999988875542 3356777888888899999999999999999999988776544
No 21
>KOG0915|consensus
Probab=99.57 E-value=6.2e-10 Score=145.47 Aligned_cols=607 Identities=14% Similarity=0.185 Sum_probs=363.0
Q ss_pred HHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhH
Q psy14676 283 YRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRT 362 (1827)
Q Consensus 283 ~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~v 362 (1827)
...+...|.....++++..|.++.--+-.+++..+.. .......+.|..++...|.|.+.=+
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~------------------~~v~l~~~eI~~aF~~~Lsd~dEf~ 877 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQ------------------PEVVLMLKEIQEAFSHLLSDNDEFS 877 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC------------------chhhhccHHHHHHHHHHhcccHHHH
Confidence 3345555666778899999999886666666443211 1234456777788888888887766
Q ss_pred HHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCC--------CCCCc-------cc---CCCCCC
Q psy14676 363 RQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGE--------GMDTE-------EE---DGEDEG 424 (1827)
Q Consensus 363 R~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~--------~~~~e-------~e---d~~~~~ 424 (1827)
...+-.-++-+=+...+.+. ..++.++...|.. ..++...-++++ +-+++ -| -.+|-+
T Consensus 878 QDvAsrGlglVYelgd~~~k---~~LV~sL~~tl~~-Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~ 953 (1702)
T KOG0915|consen 878 QDVASRGLGLVYELGDSSLK---KSLVDSLVNTLTG-GKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG 953 (1702)
T ss_pred HHHHhcCceEEEecCCchhH---HHHHHHHHHHHhc-cccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC
Confidence 66665444432222222333 6777887777754 112111111100 00000 00 012222
Q ss_pred CCCCCCC----CCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCC
Q psy14676 425 EDDNEYS----DDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS 500 (1827)
Q Consensus 425 ~~~~e~~----d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~ 500 (1827)
..|.-|. -.-...|.-|.+|+-.++.+++..|+.+.||+.+|+|.|...=.|....|+.+....-..|+.-..
T Consensus 954 qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k--- 1030 (1702)
T KOG0915|consen 954 QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK--- 1030 (1702)
T ss_pred ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH---
Confidence 2222221 012356888999999999999999999999999999999999999999999988877666653211
Q ss_pred CCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhcccc
Q psy14676 501 PLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKL 580 (1827)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~ 580 (1827)
..+-.....+++.+...++++.|+.|..+=-++..++..++ ..+.
T Consensus 1031 -----------------~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~----------~~~~-------- 1075 (1702)
T KOG0915|consen 1031 -----------------KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP----------FDQV-------- 1075 (1702)
T ss_pred -----------------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC----------hHHH--------
Confidence 12334567889999999999999988844333433333221 1111
Q ss_pred chhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHH
Q psy14676 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLL 660 (1827)
Q Consensus 581 d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l 660 (1827)
.+-.+++|..++|.++|....||+.|-++...+.|.+-.+.
T Consensus 1076 -~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~-------------------------------------- 1116 (1702)
T KOG0915|consen 1076 -KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC-------------------------------------- 1116 (1702)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------------------------------------
Confidence 13467899999999999999999988775544432222100
Q ss_pred HHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhh
Q psy14676 661 DTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALT 740 (1827)
Q Consensus 661 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~ 740 (1827)
+. ...+...+...-++|-++
T Consensus 1117 --------d~--------------------------------------~~~~~~~~~l~~iLPfLl-------------- 1136 (1702)
T KOG0915|consen 1117 --------DV--------------------------------------TNGAKGKEALDIILPFLL-------------- 1136 (1702)
T ss_pred --------cc--------------------------------------CCcccHHHHHHHHHHHHh--------------
Confidence 00 000000001111222221
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhH
Q psy14676 741 SMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQV 820 (1827)
Q Consensus 741 ~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~ 820 (1827)
T Consensus 1137 -------------------------------------------------------------------------------- 1136 (1702)
T KOG0915|consen 1137 -------------------------------------------------------------------------------- 1136 (1702)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHh-hhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhH
Q psy14676 821 TIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLE-GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 899 (1827)
Q Consensus 821 ~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~-~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~il 899 (1827)
. ++. +.-+.+|+..+.++.-|++++|..+.||+++++
T Consensus 1137 -----------------------------------------~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LI 1174 (1702)
T KOG0915|consen 1137 -----------------------------------------DEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLI 1174 (1702)
T ss_pred -----------------------------------------ccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHH
Confidence 1 011 223578899999999999999999999999999
Q ss_pred HHHHHhhcccchHH-HHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhh
Q psy14676 900 PLILKYSREEDDEL-REFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA 978 (1827)
Q Consensus 900 P~ll~~l~d~~~~v-re~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~ 978 (1827)
|.+++....-++.| -=.++++.+. . ..+ -++.|..++...
T Consensus 1175 p~ll~~~s~lE~~vLnYls~r~~~~----------------e---------------~ea----lDt~R~s~akss---- 1215 (1702)
T KOG0915|consen 1175 PLLLNAYSELEPQVLNYLSLRLINI----------------E---------------TEA----LDTLRASAAKSS---- 1215 (1702)
T ss_pred HHHHHHccccchHHHHHHHHhhhhh----------------H---------------HHH----HHHHHHhhhcCC----
Confidence 99999876533333 1111111000 0 000 001111111110
Q ss_pred HhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccC-ChhhHHHHHHH
Q psy14676 979 EIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSN-SALMRTTHQSN 1057 (1827)
Q Consensus 979 ~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~-~~~~R~~a~~~ 1057 (1827)
| .|+.+ ..|+.-+=.-..+.++|.+.+.++++ .-.+|.++.++
T Consensus 1216 -----------------p----mmeTi---------------~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~f 1259 (1702)
T KOG0915|consen 1216 -----------------P----MMETI---------------NKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASF 1259 (1702)
T ss_pred -----------------c----HHHHH---------------HHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHH
Confidence 0 11111 11111111112356789999999766 46799999999
Q ss_pred HHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHH
Q psy14676 1058 QTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQC 1137 (1827)
Q Consensus 1058 L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ 1137 (1827)
+..++...+..++|| .+.++..++..++|++.-++..-..++|.+++.=.| ..+..+++.+...
T Consensus 1260 I~~L~~r~~~emtP~----------sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~------dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1260 ISLLVQRLGSEMTPY----------SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP------DQMQKLIETLLAD 1323 (1702)
T ss_pred HHHHHHHhccccCcc----------hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999888999999975322 2344555555444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHH--HHHHHHHhcCCCccccchhhh
Q psy14676 1138 TLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTT--VKALTKIAASPLRIDLRPILT 1215 (1827)
Q Consensus 1138 ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~a--v~al~~ia~~~~~~dl~p~~~ 1215 (1827)
++.. +.+ .+..++..+..+..+..+.+++|-..++|.+.=....|.--... -+.+..+... ...-+.-|..
T Consensus 1324 ~l~k----~es--~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsg-gagtvrl~~~ 1396 (1702)
T KOG0915|consen 1324 LLGK----DES--LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSG-GAGTVRLYLL 1396 (1702)
T ss_pred Hhcc----CCC--ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC-CcchhhhhHH
Confidence 4332 222 23567777777888888899999999999887665544210000 1122333221 1111222445
Q ss_pred hhHhhhhhhhcchh-HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC
Q psy14676 1216 DGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS 1268 (1827)
Q Consensus 1216 ~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~ 1268 (1827)
+++-.+......++ |.+|..+..++...+....+..+.+.+..+.+.+...+.
T Consensus 1397 eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~ 1450 (1702)
T KOG0915|consen 1397 EILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLN 1450 (1702)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhh
Confidence 55555444444444 999999999998887766655554445555555544443
No 22
>KOG1242|consensus
Probab=99.55 E-value=2e-11 Score=149.38 Aligned_cols=430 Identities=20% Similarity=0.208 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY 115 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~ 115 (1827)
..+.|.--+.+.+..+..+|+..+- +...+.++++..++.-..++..++..++.|.+.||.....|+..+........-
T Consensus 54 ~~l~~~~~~~l~~~~~~~~~~~~~v-~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~ 132 (569)
T KOG1242|consen 54 LNLKPCFEQRLNSLHNDNLRNNVVV-LEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG 132 (569)
T ss_pred HHHHHHHHHHhccchhHHHhhhhHH-HHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH
Confidence 4455555566655545556655544 444445555555555557899999999999999999999999998887765544
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch-hhHHhHHHHHHHHHhhcccC-chHHHHHHHHHHHHHHHhCCCc
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH-RFAEHIERVMPLILKYSREE-DDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~-~~~p~l~~i~p~l~~~~~~~-~delRe~al~ale~~~~~~p~e 193 (1827)
..+.+.+.+.+. ..+...|+.+...+..+.+..+. .+.++ .++--+....++. ...-||.++.+++.+....+..
T Consensus 133 ~~~l~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~~i~~~~~~--~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 133 EYVLELLLELLT-STKIAERAGAAYGLAGLVNGLGIESLKEF--GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP 209 (569)
T ss_pred HHHHHHHHHHhc-cccHHHHhhhhHHHHHHHcCcHHhhhhhh--hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC
Confidence 444444455554 34456677777777777665442 23321 2344444455543 4445678899999999999999
Q ss_pred cccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q psy14676 194 ITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 273 (1827)
Q Consensus 194 ~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~ 273 (1827)
+.||+..++|.++..... ..-+||.+|..+..++..
T Consensus 210 ~EPyiv~~lp~il~~~~d--------------------------------------------~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGD--------------------------------------------KINKVREAAVEAAKAIMR 245 (569)
T ss_pred CCchHHhhHHHHHHHhhc--------------------------------------------cchhhhHHHHHHHHHHHH
Confidence 999999999999875411 112699999999999998
Q ss_pred HcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 274 TRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 274 ~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
+.+.+- .+.++|.++..+.+.-|.-+.+++..++.+... ....++..+|.++|-+.+
T Consensus 246 ~~~~~a---VK~llpsll~~l~~~kWrtK~aslellg~m~~~--------------------ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 246 CLSAYA---VKLLLPSLLGSLLEAKWRTKMASLELLGAMADC--------------------APKQLSLCLPDLIPVLSE 302 (569)
T ss_pred hcCcch---hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh--------------------chHHHHHHHhHhhHHHHH
Confidence 876432 445667766666666899999999999977732 236789999999999999
Q ss_pred HhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy14676 354 QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD 433 (1827)
Q Consensus 354 ~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~ 433 (1827)
.|.|.+++||.++...+..+..++-. +-+..++|.+.+++.+...+
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~------------------------------- 348 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCY------------------------------- 348 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccc-------------------------------
Confidence 99999999999999999988888754 33788889888888542111
Q ss_pred CcccHHHHHHHHHHHHHHHHHhh-hhh-hhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q psy14676 434 DDMSWKVRRAAAKCLEAIIATRR-DLI-GDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMD 511 (1827)
Q Consensus 434 ~d~~w~vr~~a~~~l~~l~~~~~-~~f-~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~ 511 (1827)
..+|+..+..+.. ... .|-+.-++|.+-..+++|...++..+...+..+.+
T Consensus 349 ----------~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~----------------- 401 (569)
T KOG1242|consen 349 ----------TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK----------------- 401 (569)
T ss_pred ----------hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH-----------------
Confidence 1355555555444 333 36777888888888888877666555544333332
Q ss_pred cCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHH
Q psy14676 512 QEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKM 591 (1827)
Q Consensus 512 ~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~ 591 (1827)
...|+ +++. .+.++++|.
T Consensus 402 -----------------------------------------LveDp---------~~la------------pfl~~Llp~ 419 (569)
T KOG1242|consen 402 -----------------------------------------LVEDP---------KDLA------------PFLPSLLPG 419 (569)
T ss_pred -----------------------------------------hhcCH---------HHHh------------hhHHHHhhH
Confidence 11111 1111 245677888
Q ss_pred HHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhh-hhhhhhHHHHHHHHhhCCCc
Q psy14676 592 LLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQR-ALKLSTLLLLDTLLVNYPSA 670 (1827)
Q Consensus 592 l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~-~lk~~~l~~l~~l~~~~~~~ 670 (1827)
+...+.|..+|||..|.++||.+++.++.. ..+..+|++.+.++.... .-|..+...+..++..++-.
T Consensus 420 lk~~~~d~~PEvR~vaarAL~~l~e~~g~~-----------~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 420 LKENLDDAVPEVRAVAARALGALLERLGEV-----------SFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVE 488 (569)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhh-----------cccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccch
Confidence 888899999999999999999999999973 236778999999988754 46777778888877666543
No 23
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.53 E-value=1.9e-10 Score=137.16 Aligned_cols=723 Identities=15% Similarity=0.161 Sum_probs=412.5
Q ss_pred hHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy14676 33 NVCRRITGKLSTA-IEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~-l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
.+..+++|.|++- ++++ -|+-....+..++..+++...+|--.||-.+-+.|-++++.+|-..-.-+.+++..|+
T Consensus 203 ~vfnkvLp~lm~r~LeDq----erhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~G 278 (975)
T COG5181 203 AVFNKVLPMLMSRELEDQ----ERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCG 278 (975)
T ss_pred HHHHHHHHHHHhhhhhhh----hhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhc
Confidence 4667777877653 2322 2455566666777777776666655667666777788888888776666777766664
Q ss_pred hhHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC-chHHHHHHHHHHHHHH
Q psy14676 112 LQLYTKLIDFLLEGLT---TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-DDELREFCLQACEAFV 187 (1827)
Q Consensus 112 ~~~~~~l~~~ll~~L~---~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~-~delRe~al~ale~~~ 187 (1827)
=. ..+..+. .+.++-+|...-.++|.++.+.+ ++++.|++-..|... .-+-|..+......++
T Consensus 279 l~-------~~vs~mrpDi~~~deYVRnvt~ra~~vva~alg------v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~ 345 (975)
T COG5181 279 LG-------FSVSSMRPDITSKDEYVRNVTGRAVGVVADALG------VEELLPFLEALCGSRKSWEARHTGIRIAQQIC 345 (975)
T ss_pred cc-------eeeeeccCCcccccHHHHHHHHHHHHHHHHhhC------cHHHHHHHHHHhcCccchhhhchhhHHHHHHH
Confidence 22 1222221 12456788888888888887665 677888888887643 5566666666556666
Q ss_pred HhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHH
Q psy14676 188 QRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKC 267 (1827)
Q Consensus 188 ~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~ 267 (1827)
...+...-+|+..++..+-+.++. .+-.||--+|.+
T Consensus 346 ~llG~s~l~hl~~l~~ci~~~l~D--------------------------------------------~~~~vRi~tA~a 381 (975)
T COG5181 346 ELLGRSRLSHLGPLLKCISKLLKD--------------------------------------------RSRFVRIDTANA 381 (975)
T ss_pred HHhCccHHhhhhhHHHHHHHHhhc--------------------------------------------cceeeeehhHhH
Confidence 666777778888888777665521 123688889999
Q ss_pred HHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHH
Q psy14676 268 LEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSL 347 (1827)
Q Consensus 268 L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~I 347 (1827)
|..++...+++-...|..++-.|-+. ++.--=..|.+++++++-..+ . |++ ++....-...
T Consensus 382 lS~lae~~~Pygie~fd~vl~pLw~g-------~~~hrgk~l~sfLkA~g~iip--l-----m~p-----eYa~h~tre~ 442 (975)
T COG5181 382 LSYLAELVGPYGIEQFDEVLCPLWEG-------ASQHRGKELVSFLKAMGFIIP--L-----MSP-----EYACHDTREH 442 (975)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHH-------HHhcCCchHHHHHHHhccccc--c-----CCh-----HhhhhhHHHH
Confidence 99999988877777777776666433 222223345566666653221 1 111 2333345566
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCC
Q psy14676 348 VKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDD 427 (1827)
Q Consensus 348 v~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~ 427 (1827)
++.+.+.++.++.+-.....-+...+..+.+..-..+..++.|...+..
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~f------------------------------- 491 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF------------------------------- 491 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchH-------------------------------
Confidence 7778888877776666555555555554443333334455555554443
Q ss_pred CCCCCCCcccHHHHHH--------HHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccC
Q psy14676 428 NEYSDDDDMSWKVRRA--------AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 499 (1827)
Q Consensus 428 ~e~~d~~d~~w~vr~~--------a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~ 499 (1827)
|+=|.| ...+-..+++..|. +..+..++.-+.|.-+--|.-+......++..+|.
T Consensus 492 ----------w~rr~A~dr~~~k~v~~ttvilAk~~g~------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~- 554 (975)
T COG5181 492 ----------WRRRSAGDRRSYKQVVLTTVILAKMGGD------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGR- 554 (975)
T ss_pred ----------HHhhhcccccccceeehhHHHHHHHcCC------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhccc-
Confidence 221111 11333344444441 12334455556666555666666666666655552
Q ss_pred CCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhh-----------------hhhHHhHHHHHHHhhcCCCcccc
Q psy14676 500 SPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKS-----------------IRTRQDCLALLRELMTSSDKDFR 562 (1827)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~-----------------~~~~~~~l~~l~~~~~d~dpd~R 562 (1827)
.+++.+ +.-.....++.++.++..... -+...-++..++..++.+-||+|
T Consensus 555 ---~~~dEr----------leerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR 621 (975)
T COG5181 555 ---LGFDER----------LEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVR 621 (975)
T ss_pred ---ccccHH----------HHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHH
Confidence 111100 111223444455554432111 11233456667788899999999
Q ss_pred ccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhh
Q psy14676 563 FMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILG 642 (1827)
Q Consensus 563 f~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~ 642 (1827)
.-+++-.....+-=.......-..++=..|..-++...+||--+-.+++..+....+- . .++|-..+++|.|.
T Consensus 622 ~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~---~----~mqpPi~~ilP~lt 694 (975)
T COG5181 622 IRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRF---R----SMQPPISGILPSLT 694 (975)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcc---c----ccCCchhhcccccc
Confidence 8887644333221000011112233344466677777777655544444433322221 1 23455556666666
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhh
Q psy14676 643 SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 722 (1827)
Q Consensus 643 ~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~ll 722 (1827)
-.||+-.+-...++..++..+..+.+..+++..-..+.=++..++-.-...++..|-
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~----------------------- 751 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNAT----------------------- 751 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhh-----------------------
Confidence 667777777777788888888666565555444433333332222211222221111
Q ss_pred HHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhH
Q psy14676 723 PQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPV 802 (1827)
Q Consensus 723 p~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~ 802 (1827)
+-||-+.++ .+--++|+.|++.+....
T Consensus 752 ---------------------~tfG~Is~a----iGPqdvL~~LlnnLkvqe---------------------------- 778 (975)
T COG5181 752 ---------------------ETFGCISRA----IGPQDVLDILLNNLKVQE---------------------------- 778 (975)
T ss_pred ---------------------hhhhhHHhh----cCHHHHHHHHHhcchHHH----------------------------
Confidence 112222221 112344444444332100
Q ss_pred HHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q psy14676 803 VEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAA 882 (1827)
Q Consensus 803 v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~ 882 (1827)
.+.|...-.|++-+...++.= .+++.+..-- +.|...|+.+++.++.+
T Consensus 779 ----------------------------Rq~RvctsvaI~iVae~cgpf---sVlP~lm~dY-~TPe~nVQnGvLkam~f 826 (975)
T COG5181 779 ----------------------------RQQRVCTSVAISIVAEYCGPF---SVLPTLMSDY-ETPEANVQNGVLKAMCF 826 (975)
T ss_pred ----------------------------HHhhhhhhhhhhhhHhhcCch---hhHHHHHhcc-cCchhHHHHhHHHHHHH
Confidence 012223334444444444431 1112211111 14667899999999999
Q ss_pred HHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCC
Q psy14676 883 ICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPT 962 (1827)
Q Consensus 883 L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~ 962 (1827)
+.+-.|+.=..|+--+.|.+-+++.|.|.--|.+|...+.-++.+|+...
T Consensus 827 mFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg------------------------------ 876 (975)
T COG5181 827 MFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG------------------------------ 876 (975)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc------------------------------
Confidence 99999999999999999999999999999999999877766655553311
Q ss_pred hHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCC-CCchHHHHH
Q psy14676 963 SEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP-SNLLPRLQE 1041 (1827)
Q Consensus 963 ~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~-~~llP~L~~ 1041 (1827)
.. +++...+.-+|+ .+-++++.+.+..-||+..++...+ ..++-.+.+
T Consensus 877 -------------~e--------------da~IHLlNllwp----NIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~q 925 (975)
T COG5181 877 -------------DE--------------DAAIHLLNLLWP----NILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQ 925 (975)
T ss_pred -------------cH--------------HHHHHHHHHhhh----hccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 10 111111222222 2234555566656677766665544 557889999
Q ss_pred HhccCChhhHHHHHHHHHHHHHhcccccccc
Q psy14676 1042 SLKSNSALMRTTHQSNQTFNVIIQRNDIHNH 1072 (1827)
Q Consensus 1042 ~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~ 1072 (1827)
.|-.++.++|..-+..+..++.-..+.+.||
T Consensus 926 GLFHPs~~VRk~ywtvyn~myv~~~damvp~ 956 (975)
T COG5181 926 GLFHPSSTVRKRYWTVYNIMYVFDSDAMVPC 956 (975)
T ss_pred hccCchHHHHHHHHHHHhhhhhccccccccc
Confidence 9999999999999999988877777777776
No 24
>KOG1248|consensus
Probab=99.44 E-value=2.6e-07 Score=120.14 Aligned_cols=406 Identities=14% Similarity=0.165 Sum_probs=246.9
Q ss_pred hhHHHHHHHHHHHHHhc--cccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchh
Q psy14676 871 STNRTYIQCFAAICRQA--GHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSV 948 (1827)
Q Consensus 871 ~vr~~~l~~l~~L~~~~--~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~ 948 (1827)
..+.-+.|+|+-|+.-| |-.+..-++.+-|.+..++.... ++|.+-+++|..++..+...-.+ -....-.+.+
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a----~e~~e~~s~~ 564 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDA----AENKEVLSND 564 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchH----HHHHHHHhhh
Confidence 56778889999998874 66677779999999999987655 99999999999999876310000 0000000011
Q ss_pred -hhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhh
Q psy14676 949 -ADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL 1027 (1827)
Q Consensus 949 -~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L 1027 (1827)
....+.+|+.|+..... +.+.+....+.|.......++....++..-..+.+|.+
T Consensus 565 AknfL~~lfn~ytq~~~~------------------------~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~ 620 (1176)
T KOG1248|consen 565 AKNFLPRLFNVYTQTVAA------------------------GRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGEL 620 (1176)
T ss_pred hhHHHHHHHHHhcCCCcc------------------------ccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhH
Confidence 13345666666531100 00111111111111111111111111111111222221
Q ss_pred cccCCCCchHHHHHHhccC-ChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHh-hcCCchhhHHHH
Q psy14676 1028 TLIDPSNLLPRLQESLKSN-SALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIAS-VGDNFYKITAEA 1105 (1827)
Q Consensus 1028 ~~~~~~~llP~L~~~L~s~-~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~-l~D~~~~V~~eA 1105 (1827)
+ .+. .+......+++|..+....+-.= ++. +..+. .+..- .+...++++..+
T Consensus 621 a---------------s~~~~s~~~~~~~slLdl~~~~a~~~~------e~~----vs~l~-~v~~~~e~~~~~~vQkK~ 674 (1176)
T KOG1248|consen 621 A---------------SDLDESVASFKTLSLLDLLIALAPVQT------ESQ----VSKLF-TVDPEFENSSSTKVQKKA 674 (1176)
T ss_pred h---------------ccchhhhhhHHHHHHHHHHHhhhcccc------chh----HHHHH-HhhHHhhccccHHHHHHH
Confidence 1 111 12233344444443322222111 111 22222 22222 233468899999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Q psy14676 1106 LLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRL 1185 (1827)
Q Consensus 1106 l~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L 1185 (1827)
.+.++++... |. +..-...++..|+..+.+.+. +.+.-.|..++.|+..++...+.......+..+|-++=.+
T Consensus 675 yrlL~~l~~~--~s---~~~~~~q~i~~I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~ 747 (1176)
T KOG1248|consen 675 YRLLEELSSS--PS---GEGLVEQRIDDIFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL 747 (1176)
T ss_pred HHHHHHHhcC--Cc---hhhHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 9998888754 11 112234578889998888877 6667789999999999999888544455666666655555
Q ss_pred h--hhhhHHHHHHHHHHHh--cCCCccccch---hhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHH
Q psy14676 1186 R--NEITRLTTVKALTKIA--ASPLRIDLRP---ILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNK 1258 (1827)
Q Consensus 1186 ~--~e~tR~~av~al~~ia--~~~~~~dl~p---~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ 1258 (1827)
+ |+..|..|-..|-.|+ .+.....-+| .+++.++.+...+-.....++..++-++..++..+..-++.+++..
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4 3345777777777766 3222111123 6777777777666555555666669999999999988899999999
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHH
Q psy14676 1259 VTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 1338 (1827)
Q Consensus 1259 ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~ 1338 (1827)
++..+.-.|..+.++++.+|+..+..++...|.... . ...+.+++.++...++..-.+|..+=.
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l-----------~-----~~~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL-----------S-----PHLEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH-----------h-----hhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999987774311 1 123678999999888888899998866
Q ss_pred HHhh----hhhhhhhhhHHH
Q psy14676 1339 TLGS----IAVGNLQQYVPF 1354 (1827)
Q Consensus 1339 aLG~----i~~~~l~~~LP~ 1354 (1827)
-|.. .|.+.+..|+|.
T Consensus 892 LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 892 LLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred HHHHHHHHhCHHHHHhhCHH
Confidence 5544 467778888883
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.36 E-value=2e-09 Score=140.98 Aligned_cols=426 Identities=17% Similarity=0.192 Sum_probs=296.8
Q ss_pred HHHHHHhhhhccccchhhHHHHHHhhhcccC-CCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhh
Q psy14676 1001 IWAQLFLHCECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFI 1079 (1827)
Q Consensus 1001 ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~ 1079 (1827)
..+.+.+-+.++.+.+|..|.++|+.++... .+.++|.+.+.+.++++.+|..|+.++..++...++.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----------- 148 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----------- 148 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----------
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----------
Confidence 3455566667888889989999999887442 2568899999999999999999999999887776665
Q ss_pred hhhhhh-hhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14676 1080 YSFYYF-LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISC 1158 (1827)
Q Consensus 1080 ~~~l~~-Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~a 1158 (1827)
++. +++.+.+.+.|+++.|+..|+.++.++ +.- ...+...+..++..+...+. +.++-++..++..
T Consensus 149 ---~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-------~~~~~~~~~~~~~~L~~~l~--~~~~~~q~~il~~ 215 (526)
T PF01602_consen 149 ---VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-------DDSYKSLIPKLIRILCQLLS--DPDPWLQIKILRL 215 (526)
T ss_dssp ---HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-------HHHHTTHHHHHHHHHHHHHT--CCSHHHHHHHHHH
T ss_pred ---HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccC-------cchhhhhHHHHHHHhhhccc--ccchHHHHHHHHH
Confidence 334 789999999999999999999999888 210 01112456666665555554 7777788888887
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHH
Q psy14676 1159 MGQIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLST 1236 (1827)
Q Consensus 1159 lg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~a 1236 (1827)
+..+.......-. . ..+++.+...+.+.. .+.++++++-.+... .+.+..+++.+..++..++..+|..+
T Consensus 216 l~~~~~~~~~~~~-~-~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------~~~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 216 LRRYAPMEPEDAD-K-NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------PELLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HTTSTSSSHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHhcccCChhhhh-H-HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------hHHHHhhHHHHHHHhhcccchhehhH
Confidence 7765432211110 0 456777777666443 488899988877654 23567889999999998889999999
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhh
Q psy14676 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVAD 1316 (1827)
Q Consensus 1237 l~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~ 1316 (1827)
+.+|..++...+..+. ..-..+..+..+.|..++..++++|..++... ....
T Consensus 288 L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~-----------------------n~~~ 339 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALDLLYKLANES-----------------------NVKE 339 (526)
T ss_dssp HHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH-----------------------HHHH
T ss_pred HHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHHHHhhccccc-----------------------chhh
Confidence 9999999887522221 11111234446899999999999999887621 2356
Q ss_pred HHHHHHHhcC-CCCHhHHHHHHHHHhhhhhh---hhhhhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhhhh
Q psy14676 1317 LKQVILNAFT-PTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQLQ 1391 (1827)
Q Consensus 1317 l~~~~l~~~~-~~s~eVr~aAa~aLG~i~~~---~l~~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~L~ 1391 (1827)
+++.+.+.+. .++.++|..++.++|.++.. ....|+..+++.+... .....-++..+..++... .+++
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~-------~~~~ 412 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN-------PELR 412 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS-------TTTH
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC-------hhhh
Confidence 7788888884 44788999999999997754 4467999999988753 334445677788877631 1222
Q ss_pred chHHHHHHHHhhhhc-CCchhHHHHHHHHHHHhhccCCC-----cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCC
Q psy14676 1392 QFVPAIWAQLFLHCE-CQEEGTRNVVAECLGKLTLIDPS-----NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSS 1465 (1827)
Q Consensus 1392 ~~~~~i~~~L~~~~~-~~~e~vR~~aAecLGkL~~~~p~-----~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~ 1465 (1827)
..+...+++.+. ..++..+.+++.++|.-+...+. .++..+.+.....++.+|..+++++-.+....+..
T Consensus 413 ---~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~- 488 (526)
T PF01602_consen 413 ---EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN- 488 (526)
T ss_dssp ---HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST-
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch-
Confidence 223334444432 34566899999999999986665 56677777777788889999999888877643321
Q ss_pred ChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc--CCchHHHHHHHHHhhhh
Q psy14676 1466 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE--DKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1466 d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~--D~~~~Vr~~a~~~Lg~L 1522 (1827)
. ..+.+...+..... +.+++||..|...++-|
T Consensus 489 --~-----------------------~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 489 --E-----------------------VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp --T-----------------------HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred --h-----------------------hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 0 12356678888877 88999999998876654
No 26
>KOG1248|consensus
Probab=99.36 E-value=2.7e-06 Score=111.08 Aligned_cols=814 Identities=16% Similarity=0.150 Sum_probs=423.7
Q ss_pred HHHHHHHhhCCCCCh-hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchh--HHHHHHHhhhcCC
Q psy14676 14 IGLKTVISELPLGSN-ALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFH--FVILTALLPQLSS 90 (1827)
Q Consensus 14 ~~Lktvi~~lp~~~~-~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~--~~il~~ll~~L~~ 90 (1827)
-.|-.++.-.|.+.- +-.......+.|.+. .+ ..+..|...++.+|+.++..-+-.-=++. -+.+..++...-|
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~--~~-stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h 149 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLT--AE-STNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH 149 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh--hh-cccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc
Confidence 456666777776431 222355666777775 22 34788999999999999987322111111 2455556666679
Q ss_pred CCHHHHHHHHHHHHHHHHhhc---hh------HHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHH
Q psy14676 91 PRQAVRKRTIVALSHLVMSCN---LQ------LYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERV 160 (1827)
Q Consensus 91 ~~~~VRk~Ai~aL~~l~~~~~---~~------~~~~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i 160 (1827)
+.|.||++|..++..+...-+ +. ....+.-..++.... .....+- ..+..|-.+..+-| .+.+..+
T Consensus 150 ~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~-~~L~Ll~~~~~~~p---~~li~sl 225 (1176)
T KOG1248|consen 150 KKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVL-RSLMLLRDVLSTFP---RPLIKSL 225 (1176)
T ss_pred CchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHH-HHHHHHHHhhccCC---HHHHHHH
Confidence 999999999999999877321 11 111122222222211 1111111 11222222222212 3456677
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcccc-chHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccC
Q psy14676 161 MPLILKYSREEDDELREFCLQACEAFVQRCPKEITP-HIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEED 239 (1827)
Q Consensus 161 ~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p-~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d 239 (1827)
...++..+...+-.++-.|+|+++.+...-|..... ..-.++..+ +.|.|.-+
T Consensus 226 ~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al---~~l~ps~~----------------------- 279 (1176)
T KOG1248|consen 226 CEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTAL---MTLSPSEN----------------------- 279 (1176)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH---HHhCCCcc-----------------------
Confidence 788888888888889999999999998877662211 111122222 23433210
Q ss_pred CCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhccc
Q psy14676 240 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 319 (1827)
Q Consensus 240 ~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~ 319 (1827)
++---..|- .+..++...++...++....-.+.+++.+...+.+..+++-.++-.++..+++...
T Consensus 280 -----------D~~~t~~W~--~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv-- 344 (1176)
T KOG1248|consen 280 -----------DDLLTVAWL--KVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESV-- 344 (1176)
T ss_pred -----------chHHHHHHH--HHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccC--
Confidence 000012342 23444445555544444333455566666666667777777777788877774211
Q ss_pred CCCCCCCCCCCCCCCChHhhHHhhhHHHHHH-HHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhh
Q psy14676 320 SPLTPSDPNQMDQEDSPLCLLSTQVPSLVKA-LQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEW 398 (1827)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~-l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~ 398 (1827)
+ ..+.+... +...|.=+...+-.-+++++..+.+.+|.-..+|+...+..|... +.
T Consensus 345 ------------------~----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~l-r~ 401 (1176)
T KOG1248|consen 345 ------------------T----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDL-RA 401 (1176)
T ss_pred ------------------c----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHh-hc
Confidence 0 22223322 455555555566667888888888888764454443333333222 00
Q ss_pred hhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcch
Q psy14676 399 DEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKER 477 (1827)
Q Consensus 399 ~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~ 477 (1827)
++ |.. -+...-+|+|..+...| +.+... +|.=+ ..+.
T Consensus 402 ---------~~-----------------------d~~----~~~~ld~~IGSAV~AmGPe~vL~~----lpLnl--~~~s 439 (1176)
T KOG1248|consen 402 ---------SP-----------------------DFF----HKLQLDQCIGSAVRAMGPERVLTI----LPLNL--HAES 439 (1176)
T ss_pred ---------CC-----------------------CCc----cHHHHHHHHHHHHHhhCHHHHHHH----cchhc--cccc
Confidence 00 111 22244578888888888 444422 22211 3333
Q ss_pred hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCC
Q psy14676 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557 (1827)
Q Consensus 478 ~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~ 557 (1827)
..-.|.+-+-.+.+-+.... + .+ ..+.++|...+++.
T Consensus 440 ~~~~RsWLLPvLR~~i~~A~----L---------------a~----------------------F~~~ivpla~sl~~-- 476 (1176)
T KOG1248|consen 440 LSFTRSWLLPVLRDYIIGAS----L---------------AF----------------------FTEYIVPLAMSLQL-- 476 (1176)
T ss_pred cccchhHhHHHHHHhhccCc----H---------------HH----------------------HHHHHHHHHHHHHH--
Confidence 34444444444333332211 0 00 11122222211100
Q ss_pred CccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccch
Q psy14676 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDG 637 (1827)
Q Consensus 558 dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~ 637 (1827)
-.++ +.+...-+. .--++..+|-.-++..+..|+ |+..=++.+
T Consensus 477 --------------K~~~--------------------l~~~~~~~~-~~~tl~~QLW~LLP~FC~~P~--Dl~~sF~~l 519 (1176)
T KOG1248|consen 477 --------------KAKK--------------------LKEAGSQVS-LYDTLVDQLWSLLPGFCNYPV--DLAESFTDL 519 (1176)
T ss_pred --------------HHHh--------------------hhhccCcHH-HHHHHHHHHHHhChhhhCCCc--cHHHHHHHH
Confidence 0000 000000000 000111233344444454444 555556667
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhh
Q psy14676 638 IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 717 (1827)
Q Consensus 638 i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~ 717 (1827)
-|++...+.+.. .+|..-|..+..++..-..+-.+..-..+ ..+.
T Consensus 520 a~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~----------------------------------~s~~ 564 (1176)
T KOG1248|consen 520 APILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEV----------------------------------LSND 564 (1176)
T ss_pred HHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHH----------------------------------Hhhh
Confidence 788888888877 88999888888886532110000000000 0012
Q ss_pred hhhhhHHHhhhhcccccch-hhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhh
Q psy14676 718 AASILPQVLQIAKSPLLQG-AALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQ 796 (1827)
Q Consensus 718 ~~~llp~ll~l~~s~~~~~-~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~ 796 (1827)
....+|.+.++-.++..++ ..+......+... +.+.-...+.++...|.+ ..|.+....+
T Consensus 565 AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i-~~~~~~~t~~dv~~~l~~------------------s~~e~as~~~ 625 (1176)
T KOG1248|consen 565 AKNFLPRLFNVYTQTVAAGRKILASRSTVLEII-RVDYFTVTPTDVVGSLKD------------------SAGELASDLD 625 (1176)
T ss_pred hhHHHHHHHHHhcCCCccccccHHHHHHHHHHH-HHHHhhcccHHHHHHHHH------------------HHHhHhccch
Confidence 2346777777644333333 3332222211110 000001111222222211 1111110111
Q ss_pred hhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHH
Q psy14676 797 REALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTY 876 (1827)
Q Consensus 797 ~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~ 876 (1827)
.. +++..+-.-+.=+.-++++..++.+..+. .+.....++.++.+++-.
T Consensus 626 ~s------------------------------~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~ 674 (1176)
T KOG1248|consen 626 ES------------------------------VASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKA 674 (1176)
T ss_pred hh------------------------------hhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHH
Confidence 00 00001111111122334455566666665 333344555577889888
Q ss_pred HHHHHHHHHh--ccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHH
Q psy14676 877 IQCFAAICRQ--AGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQV 954 (1827)
Q Consensus 877 l~~l~~L~~~--~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~ 954 (1827)
...++.+... .......++..|...+++.+++.....+-.++.++..++..++.+..-+++
T Consensus 675 yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~----------------- 737 (1176)
T KOG1248|consen 675 YRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP----------------- 737 (1176)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-----------------
Confidence 8999998887 334456688888888888888877777777777777766655543333333
Q ss_pred HHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhccc----
Q psy14676 955 ILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLI---- 1030 (1827)
Q Consensus 955 l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~---- 1030 (1827)
.+++.++-..++.+...|+.+++||-.++.+
T Consensus 738 ---------------------------------------------k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~ 772 (1176)
T KOG1248|consen 738 ---------------------------------------------KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSL 772 (1176)
T ss_pred ---------------------------------------------HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhh
Confidence 2222222222444455566666665444411
Q ss_pred ----CC-----CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhh
Q psy14676 1031 ----DP-----SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKI 1101 (1827)
Q Consensus 1031 ----~~-----~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V 1101 (1827)
.+ +.+++.|...+-+.....+...+.++..+....++.+.. +++..++..+...+....+.|
T Consensus 773 d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~---------~~l~~li~~V~~~L~s~sreI 843 (1176)
T KOG1248|consen 773 DDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD---------ETLEKLISMVCLYLASNSREI 843 (1176)
T ss_pred cccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH---------HHHHHHHHHHHHHHhcCCHHH
Confidence 11 124444555544444444444456666665555554443 248899999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhHHH
Q psy14676 1102 TAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGD-YLKSELPVCLPI 1180 (1827)
Q Consensus 1102 ~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~-~l~~~l~~lL~~ 1180 (1827)
+..|.+.+..++..+. ...+.++++.|++.++.-.. |..-++|-..-.-+..++..+|. .+..++|...-.
T Consensus 844 ~kaAI~fikvlv~~~p------e~~l~~~~~~LL~sll~ls~--d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~k 915 (1176)
T KOG1248|consen 844 AKAAIGFIKVLVYKFP------EECLSPHLEELLPSLLALSH--DHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMK 915 (1176)
T ss_pred HHHHHHHHHHHHHcCC------HHHHhhhHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHH
Confidence 9999999998887642 13467899999999988554 76788999999999999999886 455555543333
Q ss_pred HHHh
Q psy14676 1181 LLDR 1184 (1827)
Q Consensus 1181 Ll~~ 1184 (1827)
++..
T Consensus 916 lL~n 919 (1176)
T KOG1248|consen 916 LLTN 919 (1176)
T ss_pred HHHH
Confidence 3333
No 27
>KOG0212|consensus
Probab=99.35 E-value=1.3e-10 Score=138.49 Aligned_cols=362 Identities=17% Similarity=0.222 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCC
Q psy14676 851 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 930 (1827)
Q Consensus 851 ~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~ 930 (1827)
+..++++..+......++.+..|+|.+-.+++.+-+.|.+-.+|+..++|.++.+++|.+..+|-.|++++--.+..+..
T Consensus 38 ~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~ 117 (675)
T KOG0212|consen 38 DQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG 117 (675)
T ss_pred HHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc
Confidence 45566677777777777888889999999999999999999999999999999999999999999988888877788888
Q ss_pred ccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhh
Q psy14676 931 EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1010 (1827)
Q Consensus 931 ~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~ 1010 (1827)
++.+|.++|.+ .+.+.+.+.+..+|.. .+.++.+++.+.
T Consensus 118 ~v~~~Fn~iFd------------vL~klsaDsd~~V~~~-------------------------aeLLdRLikdIV---- 156 (675)
T KOG0212|consen 118 EVLVYFNEIFD------------VLCKLSADSDQNVRGG-------------------------AELLDRLIKDIV---- 156 (675)
T ss_pred CcccchHHHHH------------HHHHHhcCCccccccH-------------------------HHHHHHHHHHhc----
Confidence 88888765543 3333343333333321 111222222111
Q ss_pred ccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHH
Q psy14676 1011 CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPV 1090 (1827)
Q Consensus 1011 ~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l 1090 (1827)
-++.. ....+.++|.+.+.+...++.+|+..+.-+..+.+..+-.+-.| ++.+.+.+
T Consensus 157 te~~~-------------tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~y----------l~~~ldGL 213 (675)
T KOG0212|consen 157 TESAS-------------TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISY----------LPSLLDGL 213 (675)
T ss_pred ccccc-------------ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhc----------chHHHHHH
Confidence 11110 12236689999999988899999999999998888777666666 99999999
Q ss_pred HHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh
Q psy14676 1091 IASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYL 1170 (1827)
Q Consensus 1091 ~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l 1170 (1827)
++-++|+.+.||.-+=.+++++.+.++. ++.+-+ ..++.+.+...+. ..+++++..|+.=+.+++...|..+
T Consensus 214 f~~LsD~s~eVr~~~~t~l~~fL~eI~s--~P~s~d----~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 214 FNMLSDSSDEVRTLTDTLLSEFLAEIRS--SPSSMD----YDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhc--CccccC----cccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCcch
Confidence 9999999999998887888999988873 111112 2344555666665 7789999999999999999999988
Q ss_pred hhhhhhhHHHHHHhhhhhhh---HHHHHHHH---HHHhcCC-Cc--cccchhhhhhHhhhhhhhcchhHHHHHHHHHHHH
Q psy14676 1171 KSELPVCLPILLDRLRNEIT---RLTTVKAL---TKIAASP-LR--IDLRPILTDGIPILGSFLRKNQRALKLSTLLLLD 1241 (1827)
Q Consensus 1171 ~~~l~~lL~~Ll~~L~~e~t---R~~av~al---~~ia~~~-~~--~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~ 1241 (1827)
-++++.++..++.-+.+..+ +..+.-.- -.+..+. .. +|+ ..++..+..++.++..+.|.+++.=+.
T Consensus 286 l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~----~~ii~vl~~~l~~~~~~tri~~L~Wi~ 361 (675)
T KOG0212|consen 286 LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY----GSIIEVLTKYLSDDREETRIAVLNWII 361 (675)
T ss_pred hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch----HHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 89999999999888865543 22222221 1222111 11 233 356678888998888999999999999
Q ss_pred HHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhC
Q psy14676 1242 TLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1242 ~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~ 1289 (1827)
.+..+.+.++-. ..+.+.+.|..-++|.+-.+.-.++..++.+|...
T Consensus 362 ~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 362 LLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHhhCcchhhh-hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 999998887543 24567788888999999899999999999999743
No 28
>KOG1991|consensus
Probab=99.25 E-value=8e-06 Score=104.89 Aligned_cols=372 Identities=17% Similarity=0.204 Sum_probs=192.1
Q ss_pred hhHHHHHHHHHHH--hhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHh---ccccchhhhhhhHHHHHHhhc
Q psy14676 833 NLQLTIVALSHLV--MSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ---AGHRFAEHIERVMPLILKYSR 907 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~--~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~---~~~~~~~yl~~ilP~ll~~l~ 907 (1827)
+|.||.-.++.+. .+..++.+.+...-....+.+++.-+||-.+.-++..+-+. ..+++.+|++.+|.-+++-.+
T Consensus 478 Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 4444554454443 24444455555555555555555556665544444444444 447799999999999999988
Q ss_pred cc-chHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCC---C--hHhHhhhhhcccchhhHhh
Q psy14676 908 EE-DDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTP---T--SEEVKSAASYTLGSIAEII 981 (1827)
Q Consensus 908 d~-~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~---~--~e~~r~~~~~~lg~~~~~i 981 (1827)
+- ++.+ -..++.+|+.++.++.||-.++..+. ...-.+.+.+ . +++.|..+. .|-
T Consensus 558 e~End~L----t~vme~iV~~fseElsPfA~eL~q~L--------a~~F~k~l~~~~~~~~~~ddk~iaA--~Gi----- 618 (1010)
T KOG1991|consen 558 EVENDDL----TNVMEKIVCKFSEELSPFAVELCQNL--------AETFLKVLQTSEDEDESDDDKAIAA--SGI----- 618 (1010)
T ss_pred hcchhHH----HHHHHHHHHHHHHhhchhHHHHHHHH--------HHHHHHHHhccCCCCccchHHHHHH--HHH-----
Confidence 73 3444 24578999999999999987665422 1111111111 1 111111100 000
Q ss_pred hhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHH
Q psy14676 982 SWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFN 1061 (1827)
Q Consensus 982 ~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l 1061 (1827)
++++..++ ..+++..+-.++ .-..++|.+...++..-...=++++.+...+
T Consensus 619 ---------L~Ti~Til--------~s~e~~p~vl~~------------le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~ 669 (1010)
T KOG1991|consen 619 ---------LRTISTIL--------LSLENHPEVLKQ------------LEPIVLPVIGFILKNDITDFYEELLEIVSSL 669 (1010)
T ss_pred ---------HHHHHHHH--------HHHhccHHHHHH------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 11111111 000000000000 0134567777777766665566666555533
Q ss_pred HHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHH
Q psy14676 1062 VIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVR 1141 (1827)
Q Consensus 1062 ~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~ 1141 (1827)
.... ..+.|- +=.|.+.+..+..|+--.--.+..-.+..++..-++ .-..-.-|+..++..+-..
T Consensus 670 t~~~-~~Isp~----------mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~----~~~s~~~y~~il~~i~~~~ 734 (1010)
T KOG1991|consen 670 TFLS-KEISPI----------MWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP----SLLSNPDYLQILLEIIKKV 734 (1010)
T ss_pred hhhh-cccCHH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch----hhhccchHHHHHHHHHHHH
Confidence 2222 223443 667778888887776544444555555555543221 1111223666677666666
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh----HHHHHHHHHH-HhcCCCcccc-----c
Q psy14676 1142 LKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT----RLTTVKALTK-IAASPLRIDL-----R 1211 (1827)
Q Consensus 1142 L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t----R~~av~al~~-ia~~~~~~dl-----~ 1211 (1827)
+.+.+....=.+.|..-++.++-+.++.+..++|..+...+.|++.+.+ |..+++.+-. +--.|. .-+ .
T Consensus 735 l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~-ltL~iLe~~ 813 (1010)
T KOG1991|consen 735 LTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPK-LTLGILENQ 813 (1010)
T ss_pred HcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcH-HHHHHHHHc
Confidence 6544444455677999999999999887777888888888888876322 6555553221 111110 000 0
Q ss_pred hhhhhhHhhhhhhhcchh-HHHHHHHHHHHHHHHHh-CCCCcChHhHHHHHHHhhhhcC
Q psy14676 1212 PILTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVN-YPSAISTEMLNKVTVELAPLVS 1268 (1827)
Q Consensus 1212 p~~~~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~-~~~~l~~~~~~~ll~~L~~ll~ 1268 (1827)
.|.+..-+....++.+.- -.=|+.++-+|.+++.- ...++..+.+..+.+.+..++.
T Consensus 814 ~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~~ 872 (1010)
T KOG1991|consen 814 GFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELLL 872 (1010)
T ss_pred CCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 011111121112221111 22356677777777775 3334544445566665554443
No 29
>PRK09687 putative lyase; Provisional
Probab=99.17 E-value=1.8e-09 Score=127.53 Aligned_cols=238 Identities=13% Similarity=0.073 Sum_probs=173.7
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
-++.|.+.|.+.+..+|..++..|+.+.. +...+.+...+.|+++.+|..|.++++++-.
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------------------QDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 35667777888888999999988875532 1466777788899999999999999999652
Q ss_pred HhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HH
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RL 1192 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~ 1192 (1827)
. .. + ....++.+...+ .+|.+..||..|+.++|.+-... ....+.+++.+...+.++++ |.
T Consensus 84 ~---------~~--~-~~~a~~~L~~l~-~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 84 A---------KR--C-QDNVFNILNNLA-LEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred C---------cc--c-hHHHHHHHHHHH-hcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHH
Confidence 1 00 0 223344443332 25889999999999999963211 12245566666666665554 99
Q ss_pred HHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCCh
Q psy14676 1193 TTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1193 ~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~ 1272 (1827)
.++.+||.+.. ++.++.|...+.++++.+|..++.+|+.+ .+. ++ .+++.|...+.|.|.
T Consensus 147 ~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~~---~~----~~~~~L~~~L~D~~~ 206 (280)
T PRK09687 147 AVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSN--KYD---NP----DIREAFVAMLQDKNE 206 (280)
T ss_pred HHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC--CCC---CH----HHHHHHHHHhcCCCh
Confidence 99999987642 46788999999999999999999999976 111 12 356667788899999
Q ss_pred hHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhH
Q psy14676 1273 HIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYV 1352 (1827)
Q Consensus 1273 ~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~L 1352 (1827)
+||..++..|+.+ | .+..+|.+++.+.++. +|..|+.+||++|.. ..+
T Consensus 207 ~VR~~A~~aLg~~--------------------~-------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~---~a~ 254 (280)
T PRK09687 207 EIRIEAIIGLALR--------------------K-------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK---TLL 254 (280)
T ss_pred HHHHHHHHHHHcc--------------------C-------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---hHH
Confidence 9999887766531 1 1468888999998865 888999999999974 678
Q ss_pred HHHHHhhhc
Q psy14676 1353 PFVLKEIEN 1361 (1827)
Q Consensus 1353 P~Il~~i~~ 1361 (1827)
|.+.+.++.
T Consensus 255 p~L~~l~~~ 263 (280)
T PRK09687 255 PVLDTLLYK 263 (280)
T ss_pred HHHHHHHhh
Confidence 888887753
No 30
>KOG0212|consensus
Probab=99.17 E-value=6.7e-08 Score=115.98 Aligned_cols=393 Identities=17% Similarity=0.150 Sum_probs=273.6
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH
Q psy14676 84 LLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER 159 (1827)
Q Consensus 84 ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~ 159 (1827)
+...|+|---.-||.|+.-+..++..+-.+ .+.++++.+........+...|+..+-.+++++-..|..-.+|+..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 345566666788999999999998876543 2444555555555444445567788888888888888888889999
Q ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccC
Q psy14676 160 VMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEED 239 (1827)
Q Consensus 160 i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d 239 (1827)
++|-++..+++.+..+|=+|.+++-..++.|..++-+|.+.+...+-+..... + .
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDs-d-------~----------------- 139 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADS-D-------Q----------------- 139 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCC-c-------c-----------------
Confidence 99999999999999999888777777788888899999999998888765320 0 0
Q ss_pred CCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcC--CchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhc
Q psy14676 240 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 317 (1827)
Q Consensus 240 ~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~--~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~ 317 (1827)
.|| .+++.++++++.-. ..-.--++.++|.|..|+..-++..|...+.-+..+-..
T Consensus 140 -------------------~V~-~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-- 197 (675)
T KOG0212|consen 140 -------------------NVR-GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-- 197 (675)
T ss_pred -------------------ccc-cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--
Confidence 111 36677777776432 110124778899999999888999999887666544311
Q ss_pred ccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccC-chhhHHHHHHHHh
Q psy14676 318 TFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAP-SLPALIPDVTSVA 396 (1827)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~-~l~~Llp~i~~~L 396 (1827)
+.-.+-.++|.+++.+.+.|.|++++||.-|-.++++....+...-+. ..+..++.+..-+
T Consensus 198 ------------------P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l 259 (675)
T KOG0212|consen 198 ------------------PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL 259 (675)
T ss_pred ------------------CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc
Confidence 113466799999999999999999999998887777666554321110 1122222221111
Q ss_pred hhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcc
Q psy14676 397 EWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKE 476 (1827)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d 476 (1827)
.+ ...-++..|+.-+..|++..|..+.+|+..++..+++++.|
T Consensus 260 ----------------~s---------------------s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 260 ----------------QS---------------------SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD 302 (675)
T ss_pred ----------------cC---------------------CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC
Confidence 11 11237888999999999999999999999999999999999
Q ss_pred hhh-hhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhc
Q psy14676 477 REE-NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMT 555 (1827)
Q Consensus 477 ~~~-~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~ 555 (1827)
..+ +++..+..+=+.+++-++......++ -.-+++..+.+++.++.+.++-.++.-+.-..+
T Consensus 303 ~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-----------------d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 303 TEEMSIKEYAQMVNGLLLKLVSSERLKEEI-----------------DYGSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhcccc-----------------chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 988 68888887777777665521111000 013567777777777777777777666644332
Q ss_pred CCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHH
Q psy14676 556 SSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLF 615 (1827)
Q Consensus 556 d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~ 615 (1827)
.. | ..+. .-...+++.++..+.|++.+|-..+...+..++
T Consensus 366 ~~-p-------~ql~------------~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 366 KA-P-------GQLL------------VHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred hC-c-------chhh------------hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 21 0 0111 124578899999999999999988877666554
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.15 E-value=2.4e-09 Score=146.84 Aligned_cols=273 Identities=16% Similarity=0.127 Sum_probs=190.9
Q ss_pred hHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChH
Q psy14676 1177 CLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTE 1254 (1827)
Q Consensus 1177 lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~ 1254 (1827)
.++.|++.|++++ .|..|+++|+.+.. .+.++.|...|++++..+|..++.+|..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----
Confidence 4556777777665 49999999998752 44678888889999999999999999887543221
Q ss_pred hHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHH
Q psy14676 1255 MLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKS 1334 (1827)
Q Consensus 1255 ~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~ 1334 (1827)
.+.|...+.++|..+|..++..|+.+-. . -...++..+.|+++.||.
T Consensus 686 -----~~~L~~~L~~~d~~VR~~A~~aL~~~~~---------------------------~-~~~~l~~~L~D~d~~VR~ 732 (897)
T PRK13800 686 -----APALRDHLGSPDPVVRAAALDVLRALRA---------------------------G-DAALFAAALGDPDHRVRI 732 (897)
T ss_pred -----hHHHHHHhcCCCHHHHHHHHHHHHhhcc---------------------------C-CHHHHHHHhcCCCHHHHH
Confidence 1234556778999999998887765321 0 123577889999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHH
Q psy14676 1335 AASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTR 1413 (1827)
Q Consensus 1335 aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR 1413 (1827)
+|+.+||.++.. +.++..+.+ ++..|.....+|+.+-. .. ....+.|...+.+++..+|
T Consensus 733 ~Av~aL~~~~~~------~~l~~~l~D~~~~VR~~aa~aL~~~~~---------~~-----~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 733 EAVRALVSVDDV------ESVAGAATDENREVRIAVAKGLATLGA---------GG-----APAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHHHHHhcccCc------HHHHHHhcCCCHHHHHHHHHHHHHhcc---------cc-----chhHHHHHHHhcCCCHHHH
Confidence 999999987531 234455555 34456666666665521 00 1113444555556778899
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHH
Q psy14676 1414 NVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSE 1493 (1827)
Q Consensus 1414 ~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~ 1493 (1827)
..++.+||++.. +..+.+.+...++++++.+|..++.||..+-..
T Consensus 793 ~aA~~aLg~~g~--~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------------------------------- 837 (897)
T PRK13800 793 AAALAALAELGC--PPDDVAAATAALRASAWQVRQGAARALAGAAAD--------------------------------- 837 (897)
T ss_pred HHHHHHHHhcCC--cchhHHHHHHHhcCCChHHHHHHHHHHHhcccc---------------------------------
Confidence 999999999853 445557788999999999999999999754311
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhh
Q psy14676 1494 RKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1494 ~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~ 1568 (1827)
..++.+..+++|++..||..|+.+||.+. .+... +..|. ...++.+ .+||+.|..+|+.+
T Consensus 838 -~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~~~~a----~~~L~-~al~D~d-------~~Vr~~A~~aL~~~ 897 (897)
T PRK13800 838 -VAVPALVEALTDPHLDVRKAAVLALTRWP--GDPAA----RDALT-TALTDSD-------ADVRAYARRALAHA 897 (897)
T ss_pred -chHHHHHHHhcCCCHHHHHHHHHHHhccC--CCHHH----HHHHH-HHHhCCC-------HHHHHHHHHHHhhC
Confidence 23488899999999999999999999972 12222 22222 2223333 39999999999753
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.14 E-value=2.8e-09 Score=146.14 Aligned_cols=272 Identities=13% Similarity=0.099 Sum_probs=193.2
Q ss_pred hhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1086 Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
-++.++..+.|+++.||..|+..++.+.. ...++.+...|. |.+..||..|+.+|+.+...
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------------~~~~~~L~~aL~--D~d~~VR~~Aa~aL~~l~~~ 682 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------------PGFGPALVAALG--DGAAAVRRAAAEGLRELVEV 682 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------------hhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhc
Confidence 45667778899999999999888877541 123444555554 88999999999999887543
Q ss_pred hhhhhhhhhhhhHHHHHHhhh--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHH
Q psy14676 1166 LGDYLKSELPVCLPILLDRLR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTL 1243 (1827)
Q Consensus 1166 ~g~~l~~~l~~lL~~Ll~~L~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L 1243 (1827)
... .+.+...|+ +...|..|+++|+.+.... ...|...|++.+..+|.+++.+|..+
T Consensus 683 ~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 683 LPP---------APALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred cCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 221 123444444 3445999999999865210 23456688999999999999999864
Q ss_pred HHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHH
Q psy14676 1244 LVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILN 1323 (1827)
Q Consensus 1244 ~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~ 1323 (1827)
+ . .+.|..++.|.|..||..+...|+.+.... +...+.+..
T Consensus 742 ----~----~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-------------------------~~~~~~L~~ 782 (897)
T PRK13800 742 ----D----D------VESVAGAATDENREVRIAVAKGLATLGAGG-------------------------APAGDAVRA 782 (897)
T ss_pred ----c----C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-------------------------chhHHHHHH
Confidence 1 1 123456789999999999888776543210 223567888
Q ss_pred hcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHh
Q psy14676 1324 AFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLF 1402 (1827)
Q Consensus 1324 ~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~ 1402 (1827)
.+.|+++.||.+|+.+||.++... ...+.+...+.+ ++..|.....+|+++- . +..++.|.
T Consensus 783 ll~D~d~~VR~aA~~aLg~~g~~~--~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~---------~-------~~a~~~L~ 844 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAELGCPP--DDVAAATAALRASAWQVRQGAARALAGAA---------A-------DVAVPALV 844 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCcc--hhHHHHHHHhcCCChHHHHHHHHHHHhcc---------c-------cchHHHHH
Confidence 899999999999999999997642 233446666655 3445555556665431 1 22346666
Q ss_pred hhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHH
Q psy14676 1403 LHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKF 1456 (1827)
Q Consensus 1403 ~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~ 1456 (1827)
..+.+++..||..++.+||++ -.+....+.|...++++++.+|..+..||..
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~--~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRW--PGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 666788899999999999996 2345677999999999999999999998864
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.13 E-value=1e-07 Score=125.05 Aligned_cols=454 Identities=18% Similarity=0.156 Sum_probs=296.6
Q ss_pred hccccchhhHHHHHHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhh
Q psy14676 1010 ECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFL 1086 (1827)
Q Consensus 1010 ~~~e~~vR~~a~e~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~L 1086 (1827)
.+.+...+.++--.+..+....++. ++..+.+-+.++++..|..|+.+++.+.... ..+.+
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~----------------~~~~l 115 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPE----------------MAEPL 115 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH----------------HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccc----------------hhhHH
Confidence 3444444444444444444433331 4667778889999999999999999765332 27789
Q ss_pred hHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q psy14676 1087 LSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNL 1166 (1827)
Q Consensus 1087 ip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~ 1166 (1827)
+|.+.+++.|+.+-||..|+.++..+.+.- | +.+... +++.+...+. |.++.|+.+|+.++..+ ..-
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p------~~~~~~---~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKD-P------DLVEDE---LIPKLKQLLS--DKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-H------CCHHGG---HHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCT
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccC-H------HHHHHH---HHHHHhhhcc--CCcchhHHHHHHHHHHH-ccC
Confidence 999999999999999999999999988752 1 122221 3455555554 78899999999999998 222
Q ss_pred hhhhhhhhhhhHHHHHHhhh-hhhh-HHHHHHHHHHHhcCCCccccchhh--hhhHhhhhhhhcchhHHHHHHHHHHHHH
Q psy14676 1167 GDYLKSELPVCLPILLDRLR-NEIT-RLTTVKALTKIAASPLRIDLRPIL--TDGIPILGSFLRKNQRALKLSTLLLLDT 1242 (1827)
Q Consensus 1167 g~~l~~~l~~lL~~Ll~~L~-~e~t-R~~av~al~~ia~~~~~~dl~p~~--~~~l~~L~~~Lrk~~r~lR~~al~aL~~ 1242 (1827)
.+.....++.+...|.+.+. ...| +...++.++.++.... ... ..+++.+..+++..+..+...+..++-.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 22212334444444444432 2233 7777777776654321 111 3567778888887778777777766654
Q ss_pred HHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHH
Q psy14676 1243 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVIL 1322 (1827)
Q Consensus 1243 L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l 1322 (1827)
+.. .+.....+++.|..+++++|..++-.++..|..++...+.. .......+.
T Consensus 258 l~~------~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~---------------------v~~~~~~~~ 310 (526)
T PF01602_consen 258 LSP------SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA---------------------VFNQSLILF 310 (526)
T ss_dssp HSS------SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---------------------HGTHHHHHH
T ss_pred hhc------chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---------------------hhhhhhhhh
Confidence 322 12367788999999999999999999999998887754211 011222233
Q ss_pred HhcCCCCHhHHHHHHHHHhhhh-hhhhhhhHHHHHHhhhc--CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHH
Q psy14676 1323 NAFTPTSEEVKSAASYTLGSIA-VGNLQQYVPFVLKEIEN--QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWA 1399 (1827)
Q Consensus 1323 ~~~~~~s~eVr~aAa~aLG~i~-~~~l~~~LP~Il~~i~~--~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~ 1399 (1827)
....+++..+|..|...|..++ ..|...+++.+.+.+.+ ++..+-.+..+++.+.... .+...|..+
T Consensus 311 ~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~----------~~~~~~~v~ 380 (526)
T PF01602_consen 311 FLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF----------PPDAEWYVD 380 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH----------GSSHHHHHH
T ss_pred eecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc----------CchHHHHHH
Confidence 3334888999999999988865 46888899999998843 3335556667777765532 234466666
Q ss_pred HHhhhhcCCchhHHHHHHHHHHHhhccCCC---cchHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhh
Q psy14676 1400 QLFLHCECQEEGTRNVVAECLGKLTLIDPS---NLLPRLQESLKS-NSALMRTTVLTAVKFTISDQMTSSDKDFRFMATN 1475 (1827)
Q Consensus 1400 ~L~~~~~~~~e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~-~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~ 1475 (1827)
.+++.+....+.++.-+..++-++...+|+ ..+..|.+.+.+ .++..+.+++-.+.......+.
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~------------ 448 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN------------ 448 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT------------
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc------------
Confidence 666666656667788888888888877776 367777777765 4666666666666665433221
Q ss_pred hhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHH-HHHHHHHhhhcccccccccCCc
Q psy14676 1476 DLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVE-TIVDALCSNMVSDKEQLRDISS 1554 (1827)
Q Consensus 1476 ~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~-~~v~~l~~~l~~~~~~~~~~~~ 1554 (1827)
.. ....++..+.....+..+.||.....++.++..+.+..... .+++.+......+ ..|
T Consensus 449 -------------~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~------s~~ 508 (526)
T PF01602_consen 449 -------------TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATED------SSD 508 (526)
T ss_dssp -------------TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-------SS
T ss_pred -------------cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccC------CCC
Confidence 00 12356677777778888999999999999999887765444 4444444333311 234
Q ss_pred cchhHHHHHHHh
Q psy14676 1555 IGLKTVISVVYC 1566 (1827)
Q Consensus 1555 ~~vRr~Al~~l~ 1566 (1827)
++||.-|..-++
T Consensus 509 ~evr~Ra~~y~~ 520 (526)
T PF01602_consen 509 PEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599987766543
No 34
>PRK09687 putative lyase; Provisional
Probab=99.11 E-value=3.4e-09 Score=125.24 Aligned_cols=247 Identities=13% Similarity=0.112 Sum_probs=176.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhh
Q psy14676 1138 TLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILT 1215 (1827)
Q Consensus 1138 ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~ 1215 (1827)
++..|. |.+..||..|+.+|+.+- + +.+++.+...+++++ .|..++.+||.+..... ...
T Consensus 28 L~~~L~--d~d~~vR~~A~~aL~~~~----~------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~------~~~ 89 (280)
T PRK09687 28 LFRLLD--DHNSLKRISSIRVLQLRG----G------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR------CQD 89 (280)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHhcC----c------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc------chH
Confidence 344554 889999999999998753 2 445666666566554 49999999999875311 023
Q ss_pred hhHhhhhhh-hcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccc
Q psy14676 1216 DGIPILGSF-LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALV 1294 (1827)
Q Consensus 1216 ~~l~~L~~~-Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~ 1294 (1827)
.+++.|... +++.+..+|.+++.+|+.+...... +...++..+...+.|.|.+||..+...|+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~---------- 154 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPL-----YSPKIVEQSQITAFDKSTNVRFAVAFALSV---------- 154 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-----cchHHHHHHHHHhhCCCHHHHHHHHHHHhc----------
Confidence 566777665 6777899999999999987432111 122355566778889999999987776642
Q ss_pred hhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHH
Q psy14676 1295 EPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSL 1373 (1827)
Q Consensus 1295 ~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL 1373 (1827)
+| -+..++.++..+.|++.+||..|+++||.++.++ +...|.+.+.+.+ ++..+....++|
T Consensus 155 ----------~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~-~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 155 ----------IN-------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN-PDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred ----------cC-------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 21 1457899999999999999999999999985432 3566777777766 345666677777
Q ss_pred HHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhh-cCCHHHHHHHHH
Q psy14676 1374 KEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLK-SNSALMRTTVLT 1452 (1827)
Q Consensus 1374 ~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~-~~~~~~R~t~l~ 1452 (1827)
+++-. +...+.|++.+.++. +|..++++||.+.. ...+|.|.++++ ++|..+|..++.
T Consensus 217 g~~~~----------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 217 ALRKD----------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD---KTLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred HccCC----------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---HhHHHHHHHHHhhCCChhHHHHHHH
Confidence 76411 233455566554433 78889999999876 468899999997 889999988888
Q ss_pred HHHH
Q psy14676 1453 AVKF 1456 (1827)
Q Consensus 1453 Alk~ 1456 (1827)
+++.
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 7763
No 35
>KOG1943|consensus
Probab=99.08 E-value=6.9e-05 Score=97.22 Aligned_cols=135 Identities=21% Similarity=0.304 Sum_probs=104.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH
Q psy14676 78 FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI 157 (1827)
Q Consensus 78 ~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l 157 (1827)
..++..+++.|+|.+..||=.|+..++.+...++.++..+.+...+..+.-.++...=-.+|-+++.+|+.- --+..-+
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlps~l 418 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLPSLL 418 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-CcchHHH
Confidence 367778888899999999999999999999999988888888888885533233444457888888888642 1222246
Q ss_pred HHHHHHHHhhcccC--------chHHHHHHHHHHHHHHHhC-CCccccchHHHHHHHHHHhccCC
Q psy14676 158 ERVMPLILKYSREE--------DDELREFCLQACEAFVQRC-PKEITPHIQSITELCLTYITYDP 213 (1827)
Q Consensus 158 ~~i~p~l~~~~~~~--------~delRe~al~ale~~~~~~-p~e~~p~l~~ii~~ll~~l~~dp 213 (1827)
+.++|++++.+..+ ...+|+.|.+.+=+|.+.. |.++.||+..+.+.++....+||
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr 483 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR 483 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc
Confidence 78999999887642 4568999998887877754 77899999999999988766654
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=99.08 E-value=1.6e-06 Score=114.13 Aligned_cols=424 Identities=11% Similarity=0.092 Sum_probs=254.7
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhccc-CCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLI-DPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~-~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.+.+-+.++.+.+|-.|.++|+.+... ..+.+++.+.+++.+.++.+|.+|+.++.-++...++.+...
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~--------- 178 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ--------- 178 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc---------
Confidence 4444555677778888888887776443 235677888888999999999999988887777666544322
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQ 1161 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~ 1161 (1827)
.+++.+...+.|.++.|.+.|+.++.++... .+..+ ......+..++..+. +-+.=-+-..+..+
T Consensus 179 ---~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~-------~~~~l-~l~~~~~~~Ll~~L~--e~~EW~Qi~IL~lL-- 243 (746)
T PTZ00429 179 ---DFKKDLVELLNDNNPVVASNAAAIVCEVNDY-------GSEKI-ESSNEWVNRLVYHLP--ECNEWGQLYILELL-- 243 (746)
T ss_pred ---chHHHHHHHhcCCCccHHHHHHHHHHHHHHh-------Cchhh-HHHHHHHHHHHHHhh--cCChHHHHHHHHHH--
Confidence 4667777788999999999999988888642 01111 223344444455554 22211122222222
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHhhh--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHH
Q psy14676 1162 IICNLGDYLKSELPVCLPILLDRLR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 1239 (1827)
Q Consensus 1162 l~~~~g~~l~~~l~~lL~~Ll~~L~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~a 1239 (1827)
......-......++..+..+++ |...-++|++++-.+.......-.......+...+..++ .++.++|..++..
T Consensus 244 --~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~ 320 (746)
T PTZ00429 244 --AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKN 320 (746)
T ss_pred --HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHH
Confidence 22111111234567777777765 444588888887776543110000111112223344444 3567899999999
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHH
Q psy14676 1240 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQ 1319 (1827)
Q Consensus 1240 L~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~ 1319 (1827)
+..++..++.-+ ..-+..+-...+|.+ .++...+++|..++.. +....++.
T Consensus 321 I~~i~~~~P~lf-----~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane-----------------------~Nv~~IL~ 371 (746)
T PTZ00429 321 IHALLVIFPNLL-----RTNLDSFYVRYSDPP-FVKLEKLRLLLKLVTP-----------------------SVAPEILK 371 (746)
T ss_pred HHHHHHHCHHHH-----HHHHHhhhcccCCcH-HHHHHHHHHHHHHcCc-----------------------ccHHHHHH
Confidence 998888754322 222333334556666 4899999999887642 12345667
Q ss_pred HHHHhcCCCCHhHHHHHHHHHhhhhhh---hhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHH
Q psy14676 1320 VILNAFTPTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPA 1396 (1827)
Q Consensus 1320 ~~l~~~~~~s~eVr~aAa~aLG~i~~~---~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~ 1396 (1827)
-+.+...+.+.+++..|..++|.++.. ....++..+++.+........-++..++.++.+- +.. +
T Consensus 372 EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~Ilrky------P~~---~--- 439 (746)
T PTZ00429 372 ELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKY------PEL---L--- 439 (746)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHC------ccH---H---
Confidence 777777788899999999999998763 2446888888887654332222456677776532 111 1
Q ss_pred HHHHHhhhh---cCCchhHHHHHHHHHHHhhccCC--CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHH
Q psy14676 1397 IWAQLFLHC---ECQEEGTRNVVAECLGKLTLIDP--SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRF 1471 (1827)
Q Consensus 1397 i~~~L~~~~---~~~~e~vR~~aAecLGkL~~~~p--~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~ 1471 (1827)
+...|...+ .-.+...|......||..+..-+ ..++-.+.+....+++.+|...++|.-.+....+.. .
T Consensus 440 il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~----~-- 513 (746)
T PTZ00429 440 MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG----M-- 513 (746)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH----H--
Confidence 334444432 12345578888889999885332 233333444445678889988888766555443311 1
Q ss_pred HHhhhhhhhhhhcccccChhHHHHHHHHHH-Hhh-cCCchHHHHHHHHHhhhh
Q psy14676 1472 MATNDLMSELQKDSIKLDDDSERKVVKMLL-RLL-EDKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1472 ~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll-~~l-~D~~~~Vr~~a~~~Lg~L 1522 (1827)
...+..++ .+. .+.+++||..|.--..-|
T Consensus 514 ----------------------~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 514 ----------------------EPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred ----------------------HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 12334444 343 467889999987655444
No 37
>KOG1943|consensus
Probab=99.00 E-value=2e-05 Score=102.03 Aligned_cols=469 Identities=16% Similarity=0.166 Sum_probs=258.9
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcC---CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcc-
Q psy14676 833 NLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTT---NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE- 908 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d- 908 (1827)
+|-.|..+++-+...++.++-..++..++.-+.- +...+ |.|-+++.|+.. |--+..-+.+|+|.|++++.=
T Consensus 357 VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r-GlLlps~l~dVvplI~kaL~Yd 432 (1133)
T KOG1943|consen 357 VRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR-GLLLPSLLEDVVPLILKALHYD 432 (1133)
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc-CCcchHHHHHHHHHHHHHhhhh
Confidence 5556888888888888888888888888883321 22334 788888888754 333444588999999999873
Q ss_pred -------cchHHHHHHHHHHHHHHh-hCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhccc----ch
Q psy14676 909 -------EDDELREFCLQACEAFVQ-RCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTL----GS 976 (1827)
Q Consensus 909 -------~~~~vre~al~Ale~~v~-~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~l----g~ 976 (1827)
.-..||++|+..|=.|.- +-+.++.|++..+.. .++...+=+++-..|.+++-++ |.
T Consensus 433 ~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s-----------~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 433 VRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLAS-----------ALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred hhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHH-----------HHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 235699999999977775 456689998764432 3344443334555555544332 21
Q ss_pred ---h---------hHhhhhcccccc--hhhhhhhhHHHHHHHHHhhh-----hccccchhhHHHHHHhhhcccCC----C
Q psy14676 977 ---I---------AEIISWQSTSTS--GVAQLQQFVPAIWAQLFLHC-----ECQEEGTRNVVAECLGKLTLIDP----S 1033 (1827)
Q Consensus 977 ---~---------~~~i~Wk~~~~~--~~~~l~~~~p~ll~~L~~~l-----~~~e~~vR~~a~e~Lg~L~~~~~----~ 1033 (1827)
. .+.++-+.++.+ .+...-..+|+..+.+|.++ -.=+..+|+.++.+|.+|....| +
T Consensus 502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~ 581 (1133)
T KOG1943|consen 502 QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD 581 (1133)
T ss_pred CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc
Confidence 1 011111101110 11122223344444444443 22346788899999999887766 4
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhcccc--ccccccchhhhhhhhhhhhHHHHHhhcCCc--hhhHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRND--IHNHNEETSFIYSFYYFLLSPVIASVGDNF--YKITAEALLVL 1109 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~--l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~--~~V~~eAl~~l 1109 (1827)
..+|+++...-+.+...|.+...+.+.+.-..... +-++ -.+..+..++.++|++...--++- ...+...++.+
T Consensus 582 ~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~--l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~I 659 (1133)
T KOG1943|consen 582 YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKG--LDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFI 659 (1133)
T ss_pred cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhh--hHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHH
Confidence 68899999998889999999988888544333211 1111 112222233344554433222211 12233333333
Q ss_pred HHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhhhhhhhhhh-hhHHHHHHhhhh
Q psy14676 1110 QQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQ-EVKERAISCMGQIICNLGDYLKSELP-VCLPILLDRLRN 1187 (1827)
Q Consensus 1110 ~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~-eVre~Ai~alg~l~~~~g~~l~~~l~-~lL~~Ll~~L~~ 1187 (1827)
+.+.-. ...-+..++-.=+..++. .+++++ -+|+.|..+++++....-. ..++.. +++...+.++.+
T Consensus 660 e~~s~s-------~~~~~~~~v~e~~~~ll~---~~l~~~n~i~~~av~av~~l~s~y~~-~d~~~~~~li~~~ls~~~~ 728 (1133)
T KOG1943|consen 660 EQLSLS-------KDRLFQDFVIENWQMLLA---QNLTLPNQIRDAAVSAVSDLVSTYVK-ADEGEEAPLITRYLSRLTK 728 (1133)
T ss_pred HHhhhc-------cchhHHHHHHHHHHHHHH---HhhcchHHHHHHHHHHHHHHHHHHHh-cCchhhhHHHHHHHHHhcC
Confidence 333210 001111122221222222 223223 5899999999999876521 112222 466667777765
Q ss_pred h---hhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcc-hhHHHHHHHHHHHHHHHHhCCCCcCh----HhHHHH
Q psy14676 1188 E---ITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRK-NQRALKLSTLLLLDTLLVNYPSAIST----EMLNKV 1259 (1827)
Q Consensus 1188 e---~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk-~~r~lR~~al~aL~~L~~~~~~~l~~----~~~~~l 1259 (1827)
. ..|..-.-++|.+-.+..+.... ..+...+....-. ....-|...+.++...++..++.+.. +.++.+
T Consensus 729 ~~~~~~r~g~~lal~~lp~~~i~~~~q---~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~L 805 (1133)
T KOG1943|consen 729 CSEERIRRGLILALGVLPSELIHRHLQ---EKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETL 805 (1133)
T ss_pred chHHHHHHHHHHHHccCcHHhhchHHH---HHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4 33666666666544322221111 2222222222211 14557889999999999877644333 345555
Q ss_pred HHHhhhhcCCCC----hhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHH
Q psy14676 1260 TVELAPLVSESD----LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSA 1335 (1827)
Q Consensus 1260 l~~L~~ll~d~D----~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~a 1335 (1827)
+..+-....|+. .-||.+++..+..+.-..+. +...+......++.-+++..-+..+..|+-
T Consensus 806 L~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~--------------p~~ld~~~i~~~~~~~vqQ~veKIdrlre~ 871 (1133)
T KOG1943|consen 806 LNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS--------------PKLLDEDSINRIIRYFVQQAVEKIDRLREL 871 (1133)
T ss_pred HHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC--------------cccccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555532 56888888887766553321 122222233445555666666667778888
Q ss_pred HHHHHhhhhhh
Q psy14676 1336 ASYTLGSIAVG 1346 (1827)
Q Consensus 1336 Aa~aLG~i~~~ 1346 (1827)
|+.++..+..-
T Consensus 872 a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 872 AASALNQIVVH 882 (1133)
T ss_pred HHHHHhceeec
Confidence 88888876543
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=1.7e-05 Score=104.61 Aligned_cols=385 Identities=16% Similarity=0.109 Sum_probs=229.4
Q ss_pred hHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCC-----CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccc
Q psy14676 997 FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-----NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHN 1071 (1827)
Q Consensus 997 ~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~-----~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~ 1071 (1827)
+++.++..+.+.+.+.+..||+.|+-|+.++....|+ .+++.+.+.+.+.++.+...|+.+|..+....+..+..
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l 216 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES 216 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH
Confidence 3455556666667899999999999999999887663 46789999999999999999999999776655443211
Q ss_pred cccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHH
Q psy14676 1072 HNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEV 1151 (1827)
Q Consensus 1072 ~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eV 1151 (1827)
....+..++..+.+-+.--....++.+ . ...|. -......++..+..++. ..+..|
T Consensus 217 -----------~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~-~y~P~-------~~~e~~~il~~l~~~Lq--~~N~AV 272 (746)
T PTZ00429 217 -----------SNEWVNRLVYHLPECNEWGQLYILELL---A-AQRPS-------DKESAETLLTRVLPRMS--HQNPAV 272 (746)
T ss_pred -----------HHHHHHHHHHHhhcCChHHHHHHHHHH---H-hcCCC-------CcHHHHHHHHHHHHHhc--CCCHHH
Confidence 233444455555432222222233332 2 23331 12345678888888887 456778
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhhhhhhHHHHHHhhh-hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchh
Q psy14676 1152 KERAISCMGQIICNLGDYL-KSELPVCLPILLDRLR-NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ 1229 (1827)
Q Consensus 1152 re~Ai~alg~l~~~~g~~l-~~~l~~lL~~Ll~~L~-~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~ 1229 (1827)
.-.|+.++-.+.......+ ......+-+.++..+. +...|..+++.+..++.... ..+..-+..+.-...+..
T Consensus 273 Vl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P-----~lf~~~~~~Ff~~~~Dp~ 347 (746)
T PTZ00429 273 VMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFP-----NLLRTNLDSFYVRYSDPP 347 (746)
T ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCH-----HHHHHHHHhhhcccCCcH
Confidence 6666666655543321111 1122222233333332 23469999999988876421 112111222222223333
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhccccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHT 1309 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~ 1309 (1827)
.+|...++.|..++.. +-+..++.+|....++.|.+++.-++..++.++...|..
T Consensus 348 -yIK~~KLeIL~~Lane-------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----------------- 402 (746)
T PTZ00429 348 -FVKLEKLRLLLKLVTP-------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----------------- 402 (746)
T ss_pred -HHHHHHHHHHHHHcCc-------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH-----------------
Confidence 3788888888776542 336679999999999999999999999999988765531
Q ss_pred CCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhh-hHHHHHHhh--h--cCchhhHHHHHHHHHHHhhccccc
Q psy14676 1310 DLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQ-YVPFVLKEI--E--NQPKRQYLLLHSLKEIISWQSTST 1384 (1827)
Q Consensus 1310 ~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~-~LP~Il~~i--~--~~~~~q~~~l~aL~Eii~~~~~s~ 1384 (1827)
....+..+++.+.+.. ++...+...+-++--.+... .++.+...+ . ..+..+..++|.|||+.....
T Consensus 403 ----a~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~--- 474 (746)
T PTZ00429 403 ----APDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE--- 474 (746)
T ss_pred ----HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh---
Confidence 2456666666665543 34444555555553332222 244444332 1 245567778999999855321
Q ss_pred cchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcc---hHHHHHhh-h-cCCHHHHHHHH
Q psy14676 1385 SGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNL---LPRLQESL-K-SNSALMRTTVL 1451 (1827)
Q Consensus 1385 ~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~---lP~L~~~l-~-~~~~~~R~t~l 1451 (1827)
-.+.++..+++.+..++..||-..-.+..|+....|... +.++.+.+ + +.++.+|.-+.
T Consensus 475 --------~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~ 538 (746)
T PTZ00429 475 --------NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAF 538 (746)
T ss_pred --------hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 123444445555555566688887788889988887532 33333332 1 34555555444
No 39
>KOG0166|consensus
Probab=98.71 E-value=1.6e-06 Score=106.88 Aligned_cols=265 Identities=16% Similarity=0.179 Sum_probs=182.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch-hHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~-~~~il 81 (1827)
|++.+.+--+-.+++.+.+.-.. +.....+..-++|+|.+.+..+.++.++.+|--+|..++..-...-.-+ ....+
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~--ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agav 154 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERN--PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAV 154 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCC--CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCch
Confidence 55555443344455555554443 2466667778999999999877689999999999999987544321111 22467
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-chhhHHh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA-GHRFAEH 156 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~-~~~~~p~ 156 (1827)
+.++..+.+++..||+.|+-|||+++...+.- .+ ...+++++..+..+......|.+.-++..+|+.- |..=...
T Consensus 155 p~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~ 234 (514)
T KOG0166|consen 155 PIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDV 234 (514)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHH
Confidence 77999999999999999999999999876532 22 2256778887776554578899999999999976 5433346
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCC
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~ 235 (1827)
+..++|.+...+...|.++..-|.-|+..+...-++.+.-.+ ..++|.+...+...
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~----------------------- 291 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS----------------------- 291 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-----------------------
Confidence 788999999999989999887777777666554444332222 13445555544331
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhh-hHHhhhHHHHhhcC-CCCHhHHHHHHHHHHHHH
Q psy14676 236 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGD-MYRLVSPPLIARFK-EREENVKSDIFHAYMALL 313 (1827)
Q Consensus 236 ~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~-~~~~v~p~L~~~l~-e~ee~VR~aa~~al~~ll 313 (1827)
+-+|+..|.+++|.++......-.. +-...+|.|...+. ++++.+|++|+.+++.+.
T Consensus 292 ---------------------~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 292 ---------------------SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred ---------------------CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence 1157778888888866443322111 22356788888886 677789999999998887
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.69 E-value=1.2e-05 Score=103.58 Aligned_cols=395 Identities=15% Similarity=0.129 Sum_probs=252.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHH
Q psy14676 5 KEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTA 83 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ 83 (1827)
.|++ +.++..|+.+...+++.. +...+.|.|..++.++ ++.||.-++..|+.+.++-.....- ....+++.
T Consensus 52 ~e~v-~~~~~iL~~~l~~~~~~~------l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 52 REQV-ELICDILKRLLSALSPDS------LLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred hHHH-HHHHHHHHHHHhccCHHH------HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 3444 566677888888886643 3778889999999864 8999999999998887765432221 23478999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHH-----HHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH-
Q psy14676 84 LLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL-----IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI- 157 (1827)
Q Consensus 84 ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l-----~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l- 157 (1827)
++.+|.+++..|.+.|+.+|..++..-. .+..+ ...+...+.+ .+..+|..+++++..++...++.+.-..
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 9999999999999999999999997532 23333 3333333333 3567899999999999998887775433
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH--HHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCC
Q psy14676 158 ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ--SITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235 (1827)
Q Consensus 158 ~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~--~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~ 235 (1827)
.++++.+++.+.++|.=+|..|++.+..++. .+.. ..|+. .+++.+...+... +
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~--------~-------------- 256 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG-LQYLEQQGIFDKLSNLLQDS--------E-------------- 256 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH-HHHHHhCCHHHHHHHHHhcc--------c--------------
Confidence 2599999998887666678777777777766 3322 33432 3566665554321 0
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHH-HHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 236 EEEDGEDEGEDDNEYSDDDDMSWKVR-RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 236 ~~~d~dde~e~~~e~sdddD~sWkVR-raAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
+ |. + .-.+. -+..+-.+.++...|..+...|+.++..+...+...+...+..|+.++|.+..
T Consensus 257 -------~----dp--~----~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 257 -------E----DP--R----LSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred -------c----CC--c----ccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 0 00 0 00011 12335667777655655556777777777788888999999999999998874
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhH----HhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLL----STQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIP 390 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp 390 (1827)
.. +| ...+ .+.+..+++.+....+....++|..|+..++.+....+..-.+.+..+..
T Consensus 320 t~-----------------~G-~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~ 381 (503)
T PF10508_consen 320 TV-----------------EG-KQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITE 381 (503)
T ss_pred CH-----------------HH-HHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 32 11 2223 34677788888888877888899999988888876544322222333344
Q ss_pred HHHHHhhhhhccc-CCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhh
Q psy14676 391 DVTSVAEWDEEEG-LGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVS 467 (1827)
Q Consensus 391 ~i~~~L~~~~~~~-~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~ 467 (1827)
.....+.+++... .. +-.+. +=.-+|.+++..+..++.+-- ..+. ..+..+
T Consensus 382 ~w~~~~~~~~~~~~l~-----~~~~q--------------------PF~elr~a~~~~l~~l~~~~Wg~~~i~-~~~gfi 435 (503)
T PF10508_consen 382 SWYESLSGSPLSNLLM-----SLLKQ--------------------PFPELRCAAYRLLQALAAQPWGQREIC-SSPGFI 435 (503)
T ss_pred HHHHHhcCCchHHHHH-----HHhcC--------------------CchHHHHHHHHHHHHHhcCHHHHHHHH-hCccHH
Confidence 4444432211000 00 00000 001289999999999986432 2222 224455
Q ss_pred hhHHHhhcchhhhhHHHHHHHHHHHHhh
Q psy14676 468 PPLIARFKEREENVKSDIFHAYMALLKG 495 (1827)
Q Consensus 468 ~~L~~~~~d~~~~Vr~~a~~~l~~L~~~ 495 (1827)
..++..-.+.....+++=++.++.|.+.
T Consensus 436 e~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 436 EYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5566666666667777777777777654
No 41
>KOG1062|consensus
Probab=98.68 E-value=3.6e-05 Score=96.89 Aligned_cols=291 Identities=16% Similarity=0.228 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhh
Q psy14676 264 AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQ 343 (1827)
Q Consensus 264 Aak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (1827)
|.-+|+.+++ .+..+.+.|.+...++.+++.||+-|+.|...+++.. | ..
T Consensus 127 AL~alg~i~s------~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~----------P--------------~l 176 (866)
T KOG1062|consen 127 ALCALGNICS------PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV----------P--------------DL 176 (866)
T ss_pred HHHHhhccCC------HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC----------c--------------hH
Confidence 4445555543 2356677888888889999999999999998888642 1 24
Q ss_pred hHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCC
Q psy14676 344 VPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDE 423 (1827)
Q Consensus 344 lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~ 423 (1827)
+..+++..-+.|.|++..|-.+...++.+++..-|+.+. |...++|.+...|++-.+..+..
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~ysp----------------- 238 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSP----------------- 238 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCC-----------------
Confidence 556677788889999999999999999999999887654 55668888888876643333321
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCC
Q psy14676 424 GEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLT 503 (1827)
Q Consensus 424 ~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~ 503 (1827)
||+--. .=.||++--+-.++..++..+.+..+.....|.++......+.
T Consensus 239 -----eydv~g-----------------------i~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdssk--- 287 (866)
T KOG1062|consen 239 -----EYDVHG-----------------------ISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSK--- 287 (866)
T ss_pred -----ccCccC-----------------------CCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccc---
Confidence 111100 0124444433344444544444444444444455544332110
Q ss_pred CCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchh
Q psy14676 504 PSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDD 583 (1827)
Q Consensus 504 ~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~ 583 (1827)
+..|.++=.++..++. . ..+...|...+..+.+.+..+|.|+||++++.|...+. .|+.
T Consensus 288 ----------N~GnAILYE~V~TI~~----I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~-----~d~~ 346 (866)
T KOG1062|consen 288 ----------NAGNAILYECVRTIMD----I--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ-----QDPT 346 (866)
T ss_pred ----------cchhHHHHHHHHHHHh----c--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc-----CCcH
Confidence 0011111111122211 1 11223445556666677889999999999999998864 5888
Q ss_pred hHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14676 584 SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTL 663 (1827)
Q Consensus 584 ~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l 663 (1827)
...+--..++.|++|+|.-+|.-|+..+-.+++.-- +..++.+|..||.+.+...|-.+-.-+..+
T Consensus 347 avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N--------------v~~mv~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 347 AVQRHRSTILECLKDPDVSIKRRALELSYALVNESN--------------VRVMVKELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888999999999999999999999997776663321 223467888888888777777766655555
Q ss_pred HhhCC
Q psy14676 664 LVNYP 668 (1827)
Q Consensus 664 ~~~~~ 668 (1827)
...|.
T Consensus 413 aEkfa 417 (866)
T KOG1062|consen 413 AEKFA 417 (866)
T ss_pred HHhcC
Confidence 55554
No 42
>KOG0891|consensus
Probab=98.66 E-value=0.0062 Score=88.11 Aligned_cols=197 Identities=17% Similarity=0.257 Sum_probs=151.1
Q ss_pred HHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHh--------ccCChhhHHHHHHHHHHHHHhcccccc
Q psy14676 999 PAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL--------KSNSALMRTTHQSNQTFNVIIQRNDIH 1070 (1827)
Q Consensus 999 p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L--------~s~~~~~R~~a~~~L~~l~~~~~~~l~ 1070 (1827)
|..+..++..++++..++|..+...+|.++..+|..++|.++... .+.-...++.....+..+.......+.
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 555667888888889999999999999999999999999998876 112234455555555566666666777
Q ss_pred ccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHH
Q psy14676 1071 NHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQE 1150 (1827)
Q Consensus 1071 ~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~e 1150 (1827)
+| +.+++-.+...++|....+...+..++++|+.+ ++.+...+++.++..+.+.+.+.+ ...
T Consensus 644 ~~----------v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v-------~g~~~~~~~~~~~~~~~~~l~~~s-~~~ 705 (2341)
T KOG0891|consen 644 PY----------VGPILLVLLPKLQDPSSGVEKAVLETIGELCAV-------GGEEMVKWVDELFSLIIKMLQDQS-SLG 705 (2341)
T ss_pred hh----------cCchHHHHHHHHhccchhhHHHHHHHHHHHHHh-------ccchhhhccchHHHHHHHHHHHhh-hhh
Confidence 77 888888888899999899999999999999965 235566677777777777776332 456
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHhhhhhhh---HHHHHHHHHHHhcCCCccccchhhhhhHh
Q psy14676 1151 VKERAISCMGQIICNLGDYLKS--ELPVCLPILLDRLRNEIT---RLTTVKALTKIAASPLRIDLRPILTDGIP 1219 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~l~~--~l~~lL~~Ll~~L~~e~t---R~~av~al~~ia~~~~~~dl~p~~~~~l~ 1219 (1827)
.|+++..+++.+.+..|..+.| ..|.++..+.+.++.+.- |.++++.+|..+. .+|+.+....
T Consensus 706 rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~------~d~~~~~~~~ 773 (2341)
T KOG0891|consen 706 KRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA------LDPYKHKVTE 773 (2341)
T ss_pred chhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc------cchhHHHHHh
Confidence 7999999999999999998777 578899999988876653 9999999995543 3555554333
No 43
>KOG0166|consensus
Probab=98.60 E-value=4.9e-06 Score=102.62 Aligned_cols=347 Identities=14% Similarity=0.132 Sum_probs=225.0
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhc-CCchhhHHHHHHHHHHHHH
Q psy14676 1036 LPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVG-DNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1036 lP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~-D~~~~V~~eAl~~l~~lv~ 1114 (1827)
.+...+.+.+++...+..+...+..+.+.... -|- ..+. -..++|.++.+++ +.+++++-||.+++..++.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~--ppi----~~vi--~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs 139 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERN--PPI----DEVI--QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS 139 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCC--CCH----HHHH--HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc
Confidence 45566666777777677777766644443332 111 0011 2268899999995 7889999999999998884
Q ss_pred HhccCCCCCCCCcchhHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHH
Q psy14676 1115 VIRPLTSPSSYDFAPFTS-DIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLT 1193 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~-~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~ 1193 (1827)
. +......+++ ..++.++..+. ..+..|++.|+.|+|.++..... ++. -
T Consensus 140 g-------tse~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~-----~Rd----------------~ 189 (514)
T KOG0166|consen 140 G-------TSEQTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPD-----CRD----------------Y 189 (514)
T ss_pred C-------chhhccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChH-----HHH----------------H
Confidence 2 1111111111 12233333344 67888999999999998743211 111 0
Q ss_pred HHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhH-HHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCCh
Q psy14676 1194 TVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQR-ALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1194 av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r-~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~ 1272 (1827)
.+ -..+++.|..++.++.. .....+.-+|..|+......-+-+.+..++|.|..++.+.|.
T Consensus 190 vl------------------~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 190 VL------------------SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred HH------------------hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 00 02234555555555543 344556778888887543222225788999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh-----
Q psy14676 1273 HIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN----- 1347 (1827)
Q Consensus 1273 ~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~----- 1347 (1827)
.+..-+.-+++.+....+... +--++ ..+.|.+...|...+..|+..|..++|+|+.|+
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~i------------q~vi~----~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKI------------QMVID----AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHH------------HHHHH----ccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH
Confidence 999999999988876433211 10011 246788889999999999999999999987664
Q ss_pred --h-hhhHHHHHHhhhcCch--hhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy14676 1348 --L-QQYVPFVLKEIENQPK--RQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLG 1421 (1827)
Q Consensus 1348 --l-~~~LP~Il~~i~~~~~--~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLG 1421 (1827)
+ ...||.+...+...++ .+.-+.|.|.-|.. +. ..+... .-..++|.|+..+...+..+|.-||-+++
T Consensus 316 ~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~----~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GN----QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CC----HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 2 2477888887765433 23446777777654 11 234443 23467788888888888899999999999
Q ss_pred HhhccCC---------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q psy14676 1422 KLTLIDP---------SNLLPRLQESLKSNSALMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1422 kL~~~~p---------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~ 1460 (1827)
.++.... ..+++.|..+|.-.+...-..++.++..++..
T Consensus 390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 9997442 24677788888766776666677788877753
No 44
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.44 E-value=3e-06 Score=98.29 Aligned_cols=199 Identities=21% Similarity=0.301 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC-c----ccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCccc
Q psy14676 344 VPSLVKALQCQLREKSIRTRQDCLALLRELVQTL-P----GCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEE 418 (1827)
Q Consensus 344 lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl-~----~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~e 418 (1827)
+.++.+.+.+.-.+.++..|..++.-+..+.... + +.+..++..+++.+...+.
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~--------------------- 63 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS--------------------- 63 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S----------------------
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh---------------------
Confidence 3444444544456789999999999998888765 1 1223334444455555542
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhccc
Q psy14676 419 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRT 498 (1827)
Q Consensus 419 d~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~ 498 (1827)
|....|-..|+.++..++...|..|.||++.++|.|+..+++....||..|..++..+++..+.
T Consensus 64 ----------------d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~ 127 (228)
T PF12348_consen 64 ----------------DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY 127 (228)
T ss_dssp ----------------HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc
Confidence 2345688899999999999999889999999999999999999999999999999999876441
Q ss_pred CCCCCCCCCcccccCCCccchhhchhhHH-HHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhc
Q psy14676 499 FSPLTPSDPNQMDQEDSPVCLLSTQVPSL-VKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDS 577 (1827)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~ 577 (1827)
. ..+ +..+. ...++..|.+|..++.-+...+....
T Consensus 128 ~-------------------------~~~~~~~l~-------------------~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 128 S-------------------------PKILLEILS-------------------QGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp ---------------------------HHHHHHHH-------------------HHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred H-------------------------HHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 0 111 23333 33444445555444444444443311
Q ss_pred ---cccch-hhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhc
Q psy14676 578 ---IKLDD-DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAA 623 (1827)
Q Consensus 578 ---~~~d~-~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~ 623 (1827)
-.+.. ...+.+.+.+..++.|.+++||..|.+++..+.+.+++.+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 11111 12467899999999999999999999999999999888654
No 45
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.42 E-value=3.1e-05 Score=97.81 Aligned_cols=290 Identities=20% Similarity=0.298 Sum_probs=190.0
Q ss_pred HHHHHHHHHhcCCCHH--HHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcC---------CCC---HHHHHHHHHH
Q psy14676 38 ITGKLSTAIEKQEDVS--VQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLS---------SPR---QAVRKRTIVA 102 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~--v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~---------~~~---~~VRk~Ai~a 102 (1827)
++|++++..-...... .....+..++.++......+.. .|..++..+...+- ... .....+.+.-
T Consensus 91 lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHH
Confidence 8899987663211111 2356677777777766666655 45566666655443 111 1245555555
Q ss_pred HHHHHHhhchhH----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc-ccCchHHHH
Q psy14676 103 LSHLVMSCNLQL----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS-REEDDELRE 177 (1827)
Q Consensus 103 L~~l~~~~~~~~----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~-~~~~delRe 177 (1827)
+..+...++.+. ...++..++....+..+...|..++++++.+++..+.. ..++.++..+.... ...+++.|.
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhH
Confidence 566666655442 34466666666555555889999999999999874321 13444444444433 444566665
Q ss_pred HHHHHHHHHHHhC-CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccc
Q psy14676 178 FCLQACEAFVQRC-PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDM 256 (1827)
Q Consensus 178 ~al~ale~~~~~~-p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~ 256 (1827)
.+++.+ .|+.+. =-.-.|....++..+++.+..
T Consensus 249 ~~~~~~-~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--------------------------------------------- 282 (415)
T PF12460_consen 249 QALEIL-IWITKALVMRGHPLATELLDKLLELLSS--------------------------------------------- 282 (415)
T ss_pred HHHHHH-HHHHHHHHHcCCchHHHHHHHHHHHhCC---------------------------------------------
Confidence 665544 233210 000013333444555544311
Q ss_pred hhhHHHHHHHHHHHHHHHcCC-------------chhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCC
Q psy14676 257 SWKVRRAAAKCLEAIIATRRD-------------LIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLT 323 (1827)
Q Consensus 257 sWkVRraAak~L~~l~~~~~~-------------~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~ 323 (1827)
.++.+.+|++++-+..-.++ +-+.+|..++|.|++.+++.....|..-+.|++.+++.+
T Consensus 283 -~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v------- 354 (415)
T PF12460_consen 283 -PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNV------- 354 (415)
T ss_pred -hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhC-------
Confidence 13555677777766654221 123478899999999999888889999999999999643
Q ss_pred CCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHH
Q psy14676 324 PSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSV 395 (1827)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~ 395 (1827)
+.+.+.++++.++|.+++.|.-+++.+|.+++..+..+...-|..+.+|+..|+|.+.+.
T Consensus 355 ------------P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 355 ------------PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred ------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 357789999999999999999899999999999999999999999999999999998764
No 46
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.41 E-value=0.0023 Score=77.66 Aligned_cols=103 Identities=20% Similarity=0.320 Sum_probs=73.6
Q ss_pred chhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHh-hhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHH
Q psy14676 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKAL-TKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 659 (1827)
Q Consensus 581 d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~-~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~ 659 (1827)
+++...++.|.|-.-+.|.-.-|+-.+.+.+.++.... + .+++...+..|-.+|+..+..+|.+++..
T Consensus 258 n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-----------~~~~~~~vs~L~~fL~s~rv~~rFsA~Ri 326 (898)
T COG5240 258 NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG-----------SQFVDQTVSSLRTFLKSTRVVLRFSAMRI 326 (898)
T ss_pred ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-----------HHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 45567788899999999988888888888887765332 2 24677888999999999999999999999
Q ss_pred HHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHH
Q psy14676 660 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTL 699 (1827)
Q Consensus 660 l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~ 699 (1827)
+|.+...|+..+..- =.++-.+++|+.+.|+..|.
T Consensus 327 ln~lam~~P~kv~vc-----N~evEsLIsd~Nr~IstyAI 361 (898)
T COG5240 327 LNQLAMKYPQKVSVC-----NKEVESLISDENRTISTYAI 361 (898)
T ss_pred HHHHHhhCCceeeec-----ChhHHHHhhcccccchHHHH
Confidence 999976666432210 11233445555665555553
No 47
>KOG2274|consensus
Probab=98.41 E-value=0.02 Score=73.94 Aligned_cols=246 Identities=15% Similarity=0.164 Sum_probs=144.3
Q ss_pred ccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCC
Q psy14676 1044 KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPS 1123 (1827)
Q Consensus 1044 ~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~ 1123 (1827)
.+.....|.+|+..+.... ....+.+ ++|.++..+++...+....+-.--..++...++ +.|...+.
T Consensus 501 ~~~~~~~ki~a~~~~~~~~--~~~vl~~----------~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as 567 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYC--KVKVLLS----------LQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAAS 567 (1005)
T ss_pred cCCCCchhHHHHHHHHhcc--Cceeccc----------cchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhh
Confidence 4556789999998887443 3344444 488899999888887766666555555665554 33322111
Q ss_pred -CCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHh
Q psy14676 1124 -SYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIA 1202 (1827)
Q Consensus 1124 -~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia 1202 (1827)
...+.|++..+| .....|+-|-..+-.++..++... ...+++...++|.++.-+..+.+
T Consensus 568 ~~skI~P~~i~lF-------~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e~~iPslisil~~~~~------------ 627 (1005)
T KOG2274|consen 568 MESKICPLTINLF-------LKYSEDPQVASLAQDLFEELLQIA-ANYGPMQERLIPSLISVLQLNAD------------ 627 (1005)
T ss_pred hhcchhHHHHHHH-------HHhcCCchHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHcCccc------------
Confidence 122334433333 233456677777777777777643 33445556666666544332111
Q ss_pred cCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc-CCCChhHHHHHHHH
Q psy14676 1203 ASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV-SESDLHIAQLTLTL 1281 (1827)
Q Consensus 1203 ~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll-~d~D~~l~~~al~~ 1281 (1827)
++...+-..+++-|.+++++.++.++...+...+|++.+.. -..|-...+.+-+|
T Consensus 628 ------------------------~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~Ec 683 (1005)
T KOG2274|consen 628 ------------------------KAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATEC 683 (1005)
T ss_pred ------------------------ccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHH
Confidence 11123345678888888998888898888888898887654 44577788999999
Q ss_pred HHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhh-----------hhhhhh
Q psy14676 1282 LTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA-----------VGNLQQ 1350 (1827)
Q Consensus 1282 L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~-----------~~~l~~ 1350 (1827)
|..++...+.. ++.--++-|. ..-.++.++-+.+.- +....+|.-.|++. ..|+++
T Consensus 684 Lra~Is~~~eq-----~~t~~~e~g~-----~~~yImqV~sqLLdp---~~sds~a~~VG~lV~tLit~a~~el~~n~d~ 750 (1005)
T KOG2274|consen 684 LRALISVTLEQ-----LLTWHDEPGH-----NLWYIMQVLSQLLDP---ETSDSAAAFVGPLVLTLITHASSELGPNLDQ 750 (1005)
T ss_pred HHHHHhcCHHH-----HHhhccCCCc-----cHHHHHHHHHHHcCC---ccchhHHHHHhHHHHHHHHHHHHHhchhHHH
Confidence 99988754321 1111111111 123567777766643 33445555666632 235555
Q ss_pred hHHHHHHhh
Q psy14676 1351 YVPFVLKEI 1359 (1827)
Q Consensus 1351 ~LP~Il~~i 1359 (1827)
+|-.++..+
T Consensus 751 IL~Avisrm 759 (1005)
T KOG2274|consen 751 ILRAVISRL 759 (1005)
T ss_pred HHHHHHHHH
Confidence 555555544
No 48
>KOG1992|consensus
Probab=98.39 E-value=0.024 Score=72.54 Aligned_cols=201 Identities=15% Similarity=0.173 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHh--hCCCCCh--hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHH
Q psy14676 5 KEQLRDISSIGLKTVIS--ELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVI 80 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~--~lp~~~~--~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~i 80 (1827)
+.+.|=+++.+.|+-|. +.|...+ .+..+.+..+-.-+++.+-+. ...++.---++|+-+.. ..+...++++
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s-~~~iQ~qlseal~~Ig~---~DFP~kWptL 127 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSS-PFNIQKQLSEALSLIGK---RDFPDKWPTL 127 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhc---cccchhhHHH
Confidence 46789999999999998 4444432 222233333333333444332 34444333333332221 1344478889
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHH-----hhchhHHHH--------------HHHHHHHhcc-CCCCHH-------
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVM-----SCNLQLYTK--------------LIDFLLEGLT-TNKSTS------- 133 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~-----~~~~~~~~~--------------l~~~ll~~L~-~~~~~~------- 133 (1827)
++-+...|++.+-.+-........++-. .-++++|.+ ++....+..+ .+++..
T Consensus 128 l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~ 207 (960)
T KOG1992|consen 128 LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFG 207 (960)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 9999888886554332222222221211 112333322 1122222221 122222
Q ss_pred HHHHHHHHHHHHHH-HhchhhHHhHHHHHHHHHhhcccC------c-------hHHHHHHHHHHHHHHHhCCCccccchH
Q psy14676 134 TNRTYIQCFAAICR-QAGHRFAEHIERVMPLILKYSREE------D-------DELREFCLQACEAFVQRCPKEITPHIQ 199 (1827)
Q Consensus 134 ~r~~ai~~l~~la~-~~~~~~~p~l~~i~p~l~~~~~~~------~-------delRe~al~ale~~~~~~p~e~~p~l~ 199 (1827)
+....+..+-++.- -.|+.|..|+++-|+.+.++++.+ + +++|..-.+-+.-++.+.+++|.||++
T Consensus 208 vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~ 287 (960)
T KOG1992|consen 208 VLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLP 287 (960)
T ss_pred HHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Confidence 33334444445433 358899999999999999988621 1 245544445556667788999999999
Q ss_pred HHHHHHHHHh
Q psy14676 200 SITELCLTYI 209 (1827)
Q Consensus 200 ~ii~~ll~~l 209 (1827)
..+...-..+
T Consensus 288 ~fv~~~W~LL 297 (960)
T KOG1992|consen 288 DFVTATWNLL 297 (960)
T ss_pred HHHHHHHHHH
Confidence 9886654443
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.38 E-value=0.00024 Score=91.68 Aligned_cols=408 Identities=16% Similarity=0.165 Sum_probs=249.2
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH-HHHH
Q psy14676 84 LLPQLSSPRQAVRKRTIVALSHLVMSCNLQL-YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI-ERVM 161 (1827)
Q Consensus 84 ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~-~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~ 161 (1827)
++.+|++.+...-..++.+|..+........ ..++.+.+..+|.. +++.+|+.++..++.++++......-.. .+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 7777877665555777888888888766544 56677777777765 5689999999999998876544322211 5689
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCC
Q psy14676 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~ 240 (1827)
+.++..+.+++.++.+.|..++..++.. +..+...+ +..++.+...+...
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~---------------------------- 172 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS---------------------------- 172 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc----------------------------
Confidence 9999999999999988888888777753 22111110 11133333333110
Q ss_pred CCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhccc
Q psy14676 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 319 (1827)
Q Consensus 241 dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~ 319 (1827)
+. .+|.-+..++..+++..++.+....+ .+++.+++.+++.+--||..++..+..++...
T Consensus 173 --------------~~--~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~--- 233 (503)
T PF10508_consen 173 --------------SD--IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP--- 233 (503)
T ss_pred --------------CH--HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh---
Confidence 00 35554666666776665554433222 37888889898878889999999999998521
Q ss_pred CCCCCCCCCCCCCCCChHhhHHh--hhHHHHHHHHHHhccC-CHhHHH-HHHHHHHHHHHhCcccccCchhhHHHHHHHH
Q psy14676 320 SPLTPSDPNQMDQEDSPLCLLST--QVPSLVKALQCQLREK-SIRTRQ-DCLALLRELVQTLPGCLAPSLPALIPDVTSV 395 (1827)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~--~lp~Iv~~l~~~L~d~-~~~vR~-a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~ 395 (1827)
+..+++.+ .++.++..+...-.|+ ...+.. +.+.+++.++.+-|..+....|.++..+...
T Consensus 234 ---------------~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~ 298 (503)
T PF10508_consen 234 ---------------HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSM 298 (503)
T ss_pred ---------------hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 12344443 3555555555544444 223333 6667778888876665555556666666665
Q ss_pred hhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHh-h-hhh----hhhHHhhhhh
Q psy14676 396 AEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-R-DLI----GDMYRLVSPP 469 (1827)
Q Consensus 396 L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~-~-~~f----~~~~~~l~~~ 469 (1827)
++. + .-..+..|+++++.++.+. | ..+ .+-+...+..
T Consensus 299 ~~s-----------------------------------~--d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~ 341 (503)
T PF10508_consen 299 LES-----------------------------------Q--DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKA 341 (503)
T ss_pred hCC-----------------------------------C--ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHH
Confidence 421 0 0126789999999999444 3 444 2344444555
Q ss_pred HHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHH-
Q psy14676 470 LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLA- 548 (1827)
Q Consensus 470 L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~- 548 (1827)
...........+|..+++++..++..... .+ + ..+..+....-+.++... ..
T Consensus 342 ~~~~~~~~~~~lk~r~l~al~~il~~~~~-~~--------------~-----~~i~~~~~~w~~~~~~~~-------~~~ 394 (503)
T PF10508_consen 342 IGDAIKSGSTELKLRALHALASILTSGTD-RQ--------------D-----NDILSITESWYESLSGSP-------LSN 394 (503)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhcCCC-Cc--------------h-----HHHHHHHHHHHHHhcCCc-------hHH
Confidence 55555555668999999999999854320 00 0 011233333333333322 22
Q ss_pred HHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhh
Q psy14676 549 LLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALT 619 (1827)
Q Consensus 549 ~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~ 619 (1827)
.+...++.|=||+|.-++.-+...+...-....-...+.+++.++.--.+.+.++++.=..++.++++...
T Consensus 395 ~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 395 LLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 56777889999999988887777665411110011223445555555556666777776777777776655
No 50
>KOG2274|consensus
Probab=98.36 E-value=0.031 Score=72.31 Aligned_cols=281 Identities=18% Similarity=0.224 Sum_probs=154.6
Q ss_pred HHHHHHHHHHhh--hcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHH
Q psy14676 836 LTIVALSHLVMS--CNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 913 (1827)
Q Consensus 836 ~Ai~aL~~l~~~--~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~v 913 (1827)
||.-+++-++.. ....++..+....+..+.-+..+.+|-+++.+|...+ ..+-+.+.+|.++-.+++...+..+++
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~ev 546 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEV 546 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHH
Confidence 677777777666 6667777777777777766677788888888888887 677788999999999999888888887
Q ss_pred HHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhh
Q psy14676 914 REFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQ 993 (1827)
Q Consensus 914 re~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~ 993 (1827)
--.-++|+...+..-+ +..--.+ ..+-|..+..|...++
T Consensus 547 l~llmE~Ls~vv~~dp-ef~as~~-----------skI~P~~i~lF~k~s~----------------------------- 585 (1005)
T KOG2274|consen 547 LVLLMEALSSVVKLDP-EFAASME-----------SKICPLTINLFLKYSE----------------------------- 585 (1005)
T ss_pred HHHHHHHHHHHhccCh-hhhhhhh-----------cchhHHHHHHHHHhcC-----------------------------
Confidence 6666666665544211 1111111 0111222222210000
Q ss_pred hhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCC----hhhHHHHHHHHHHHHHhccccc
Q psy14676 994 LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNS----ALMRTTHQSNQTFNVIIQRNDI 1069 (1827)
Q Consensus 994 l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~----~~~R~~a~~~L~~l~~~~~~~l 1069 (1827)
.|+.-.+.+.+|+.+-. ...|.|-+. +.++|.++..+..+. +..-..++-.|..+....+..+
T Consensus 586 -DP~V~~~~qd~f~el~q--------~~~~~g~m~----e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 586 -DPQVASLAQDLFEELLQ--------IAANYGPMQ----ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred -CchHHHHHHHHHHHHHH--------HHHhhcchH----HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 01111111111111000 123333322 357899999996665 4556667777776777776665
Q ss_pred cccccchhhhhhhhhhhhHHHHHhhc-CCchhhHHHHHHHHHHHHHHhcc-C-CCCCCCCcchhHHHHHHHHHHHHhhcC
Q psy14676 1070 HNHNEETSFIYSFYYFLLSPVIASVG-DNFYKITAEALLVLQQFVKVIRP-L-TSPSSYDFAPFTSDIYQCTLVRLKAAD 1146 (1827)
Q Consensus 1070 ~~~~~~~~~~~~~l~~Lip~l~~~l~-D~~~~V~~eAl~~l~~lv~~l~~-~-~~~~~~~~~~~l~~l~~~ll~~L~~~D 1146 (1827)
-.. ++....|++.+++- ..+...-..|-.++..++.+=.+ . ..+..+.+ . +..++..+ ++|.
T Consensus 653 ~~~---------l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~-~-~~yImqV~-sqLL--- 717 (1005)
T KOG2274|consen 653 PNL---------LICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGH-N-LWYIMQVL-SQLL--- 717 (1005)
T ss_pred cHH---------HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCc-c-HHHHHHHH-HHHc---
Confidence 432 36677888887773 22233322222333333332000 0 00111111 1 33444433 3454
Q ss_pred CCHHHHHHHHHHHHHHH----HHhhhhhhhhhhhhHHHHHHhhhhh
Q psy14676 1147 IDQEVKERAISCMGQII----CNLGDYLKSELPVCLPILLDRLRNE 1188 (1827)
Q Consensus 1147 ~d~eVre~Ai~alg~l~----~~~g~~l~~~l~~lL~~Ll~~L~~e 1188 (1827)
|++..+.|..-.|-++ .++|..+++.+..+|...+.|+.+-
T Consensus 718 -dp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~a 762 (1005)
T KOG2274|consen 718 -DPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQA 762 (1005)
T ss_pred -CCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHh
Confidence 3444555666666555 5557777788888888888777643
No 51
>KOG0891|consensus
Probab=98.30 E-value=0.065 Score=78.12 Aligned_cols=542 Identities=18% Similarity=0.229 Sum_probs=290.4
Q ss_pred hhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHH
Q psy14676 473 RFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRE 552 (1827)
Q Consensus 473 ~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~ 552 (1827)
++....+++|..+..++.+++...-- .++ ..+..+ ++-..++..+..
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~------------~~~---------~~~~~~------------~~v~~vl~~ll~ 535 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDII------------CSQ---------TSPHAL------------QVVKEVLSALLT 535 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhh------------hhc---------ccchHH------------HHHHHHHHHHHH
Confidence 44455789999999999998865331 011 111111 122334444444
Q ss_pred h-hcCCCccccccchHHHHHHHhhhccccchh-hHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccc
Q psy14676 553 L-MTSSDKDFRFMATNDLMSELQKDSIKLDDD-SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDL 630 (1827)
Q Consensus 553 ~-~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~-~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl 630 (1827)
. .+|++|++|...+.-+..- .|.. .++.....++..++|..-.++..++..+|++....+.+..+.++
T Consensus 536 ~aia~~~~~i~~~v~~~l~~~-------~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr--- 605 (2341)
T KOG0891|consen 536 VAIADTDPDIRIRVLSSLNER-------FDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR--- 605 (2341)
T ss_pred HhccCCCcchhhhHHhhhccc-------hhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH---
Confidence 4 6788999887766555411 1221 45666777899999999999999999999887643333332232
Q ss_pred cccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCC
Q psy14676 631 RPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQP 710 (1827)
Q Consensus 631 ~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~ 710 (1827)
-..+..+..+...+..+.+..+-..+..++..-..-+.+..-..+..-+|.+.+.+. -..+.+...+..++...-
T Consensus 606 ----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s-~~~~~~~~~~~eL~~v~g 680 (2341)
T KOG0891|consen 606 ----KTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSS-GVEKAVLETIGELCAVGG 680 (2341)
T ss_pred ----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccch-hhHHHHHHHHHHHHHhcc
Confidence 123455666677777777777766666665544444455555555666666655444 334444444554443211
Q ss_pred Cccchhhh-hhhhHHHhh-hh--cccccchhhhhhHHHHHHHHHhhh----CCCCCHHHHHHHhhccccc--cchhhhhh
Q psy14676 711 NALVEPAA-ASILPQVLQ-IA--KSPLLQGAALTSMLEFFKSLVLAE----LPGLSFSELLNMLIAPVMT--GTALHKQA 780 (1827)
Q Consensus 711 ~~~~~~~~-~~llp~ll~-l~--~s~~~~~~al~~l~~~~~~lv~~~----~~~~~~~~ll~~L~~~~~~--~~~~~~~a 780 (1827)
.... .| .++++.+.. +. .++..+.+++..+.+ +++.. .|+..++++++.|++...+ .+.+.++
T Consensus 681 -~~~~-~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~----l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~- 753 (2341)
T KOG0891|consen 681 -EEMV-KWVDELFSLIIKMLQDQSSLGKRLAALKALGQ----LESSTGYVVDPYLDYPELLDILINILKTEQSSTIRRE- 753 (2341)
T ss_pred -chhh-hccchHHHHHHHHHHHhhhhhchhHHHHHhhh----hhcccceEecccccChHHHHHHHHHHhHhhhhHHHHH-
Confidence 1122 23 456666655 33 244456677755444 44433 6888999999999987654 2333333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHH-HHHHhhhcHHHHHHHHHH
Q psy14676 781 FHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVAL-SHLVMSCNLQLYTKLIDF 859 (1827)
Q Consensus 781 l~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL-~~l~~~~~~~~~~~l~~~ 859 (1827)
+++-.|.++ +.++ +.+.+........- -.+.+.+.. .+.-+ .-+.+.+ +.++.-..-.
T Consensus 754 ---~v~~~g~~g-~~d~-~~~~~~~~~~~~~~------------~~~~~k~~~---~~~~~~~~~~~~~-~e~~p~v~I~ 812 (2341)
T KOG0891|consen 754 ---AIRLLGLLG-ALDP-YKHKVTEGTSASKI------------SSEQIKSDI---DISLLESGVNPSN-DEYYPAVTIH 812 (2341)
T ss_pred ---HHHHhhhhc-ccch-hHHHHHhhhhhHhh------------hhccccccc---hHHHHHhhhhhhh-hhhhhHHHHH
Confidence 344444222 2221 11111111100000 000000000 11101 0111111 3444444334
Q ss_pred HHhhhcCCC-ChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcccccccc
Q psy14676 860 LLEGLTTNK-STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQS 938 (1827)
Q Consensus 860 l~~~l~~~~-~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~ 938 (1827)
..+.+..++ ....-...+++...+....+-....|++.++|.++..........+++..+-+...++..+..+.||.+.
T Consensus 813 ~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~ 892 (2341)
T KOG0891|consen 813 ALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMES 892 (2341)
T ss_pred HHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhh
Confidence 444433333 4566788899999999999999999999999999999887667778887777777777777777777654
Q ss_pred ccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhh
Q psy14676 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN 1018 (1827)
Q Consensus 939 i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~ 1018 (1827)
+...+ +.|. . ...+...++.+....+.
T Consensus 893 i~~~i-------------~~~~-----------------------~-~~~~l~~~~~~l~~~i~---------------- 919 (2341)
T KOG0891|consen 893 IFTLI-------------KDFW-----------------------P-PDTSLQITIISLIEDIA---------------- 919 (2341)
T ss_pred HHHHH-------------Hhhh-----------------------h-hHHHHHHHHHHHHHHHH----------------
Confidence 33211 1111 0 00000011111111110
Q ss_pred HHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc
Q psy14676 1019 VVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF 1098 (1827)
Q Consensus 1019 ~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~ 1098 (1827)
...-+.+.... +..+|..+..........|.-....+..+ ...+..+..| ..-+.|++++.+.+.+
T Consensus 920 --~~l~~~f~~~l-~~~~~~~l~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~----------~hl~~~~~vkl~~~~~ 985 (2341)
T KOG0891|consen 920 --VALGGEFKKYL-PELLPTMLTVLQHDKSKDRVVSRKVLQSL-QKFGSNLEQY----------LHLLLPPIVKLFEDPT 985 (2341)
T ss_pred --HHHHhHHHHhh-hhhccchheeecccccchHHHHHHhhHHH-HhcCccHHhh----------HhhhccHHHHHHhhhh
Confidence 01111111111 11222222222222233333333333322 1222333334 5578888888888874
Q ss_pred --hhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh
Q psy14676 1099 --YKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDY 1169 (1827)
Q Consensus 1099 --~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~ 1169 (1827)
+.++-.++.+.+.+...+ ++..|...+...++..+..+ .+++......++.++...|..
T Consensus 986 ~~~~~~~~~l~t~~~l~~~~---------~~~~~~s~i~~~~~r~l~~s---~el~~~~~~~l~~l~~~~~~~ 1046 (2341)
T KOG0891|consen 986 VPLSIRKSALITIGRLAQQV---------DLSEYASRIIHPLVRVLSSS---PELRDVIMDTLIALVKQLGKD 1046 (2341)
T ss_pred hhHHHHhhHHHHHHHHHHhh---------HHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHhhcCc
Confidence 566667787877777643 33345555555556666532 889999999999999888763
No 52
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.28 E-value=1.6e-05 Score=92.26 Aligned_cols=183 Identities=19% Similarity=0.268 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHhhC-CCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhh
Q psy14676 8 LRDISSIGLKTVISEL-PLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLP 86 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~l-p~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~ 86 (1827)
.|--+-.-|+.++..- |...........+.+++.+...+.+. ...+...|+.+++.++..++..+.++...+++.++.
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~ 101 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3444444566666555 22221222233445556666666533 456788999999999999999998888899999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---hhhHHh--HHHHH
Q psy14676 87 QLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG---HRFAEH--IERVM 161 (1827)
Q Consensus 87 ~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~---~~~~p~--l~~i~ 161 (1827)
.+.+....+|..|..||..++..++ ....++..++....++.++.+|..+++++..+....+ ..+.+. ++.+.
T Consensus 102 ~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~ 179 (228)
T PF12348_consen 102 KLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLV 179 (228)
T ss_dssp GGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHH
Confidence 9999999999999999999999987 1123333444444455679999999999999998888 555543 58899
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHhCCCc
Q psy14676 162 PLILKYSREEDDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~ale~~~~~~p~e 193 (1827)
+.+.+.++|.++++|+.|..++..|...+|+.
T Consensus 180 ~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 180 KALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 99999999999999999999999999888864
No 53
>KOG1991|consensus
Probab=98.27 E-value=0.00084 Score=87.02 Aligned_cols=347 Identities=16% Similarity=0.236 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHhhccCCCCch----hHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy14676 35 CRRITGKLSTAIE-------KQEDVSVQLEALDILSDLLSRFGALLPSF----HFVILTALLPQLSSPRQAVRKRTIVAL 103 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~-------~~~~~~v~~~al~iL~~l~~~~~~~l~~~----~~~il~~ll~~L~~~~~~VRk~Ai~aL 103 (1827)
...+++++.+-+. ...+++-+++||.++|.+++-+-.. .+| ..-+.+.++|.++++-.-.|.||+--+
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence 3445555554443 2237889999999999999665432 222 335778888999999999999999999
Q ss_pred HHHH-Hhhch-hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---hhhHHhHHHHHHHHHhhccc-CchHHHH
Q psy14676 104 SHLV-MSCNL-QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG---HRFAEHIERVMPLILKYSRE-EDDELRE 177 (1827)
Q Consensus 104 ~~l~-~~~~~-~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~---~~~~p~l~~i~p~l~~~~~~-~~delRe 177 (1827)
+.++ ...++ ..+.+.++...+.|.++..-.||-.+.-++..+.++.. ..+.+|++.+|.-++...++ +.|.+-
T Consensus 487 ~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt- 565 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT- 565 (1010)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH-
Confidence 9999 45554 45677788888888766667788888888888888765 56999999999999998875 344442
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHH-hccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccc
Q psy14676 178 FCLQACEAFVQRCPKEITPHIQSITELCLTY-ITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDM 256 (1827)
Q Consensus 178 ~al~ale~~~~~~p~e~~p~l~~ii~~ll~~-l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~ 256 (1827)
..++.++...+++++||-..+...+-+. .+.-. ++++ +++++||.
T Consensus 566 ---~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~----~~~~---------------------------~~~~~ddk 611 (1010)
T KOG1991|consen 566 ---NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ----TSED---------------------------EDESDDDK 611 (1010)
T ss_pred ---HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh----ccCC---------------------------CCccchHH
Confidence 3468999999999999987776666432 11100 0000 00111222
Q ss_pred hhhHHHHHHHHHHHHHHH---cCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q psy14676 257 SWKVRRAAAKCLEAIIAT---RRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQE 333 (1827)
Q Consensus 257 sWkVRraAak~L~~l~~~---~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~ 333 (1827)
.- .-.+-.+++.+++.+ +|+.+..+.+.+.|.+..-++..-.++=.+++.-...+--
T Consensus 612 ~i-aA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~------------------- 671 (1010)
T KOG1991|consen 612 AI-AASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF------------------- 671 (1010)
T ss_pred HH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh-------------------
Confidence 11 111223344455544 4566777777888887777654434433333322211100
Q ss_pred CChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc---cCchhhHHHHHHHHhhhhhcccCCCCCCC
Q psy14676 334 DSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL---APSLPALIPDVTSVAEWDEEEGLGGEGGG 410 (1827)
Q Consensus 334 ~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l---~~~l~~Llp~i~~~L~~~~~~~~~~~~~~ 410 (1827)
....+++.+=.+++.+.+.++++...--....-+|........+.+ ..|+..+...+..++..+
T Consensus 672 --~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e----------- 738 (1010)
T KOG1991|consen 672 --LSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSE----------- 738 (1010)
T ss_pred --hhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCC-----------
Confidence 0012344555566677777766655544455555555555555544 357777888888887421
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhh
Q psy14676 411 EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARF 474 (1827)
Q Consensus 411 ~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~ 474 (1827)
.. +|+| ++.|.+.+..++-+++..+..+++..+...+..+
T Consensus 739 ---~~----------------~D~d-----~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l 778 (1010)
T KOG1991|consen 739 ---NG----------------EDSD-----CESACKLLEVIILNCKGLLDQYIPLFLELALSRL 778 (1010)
T ss_pred ---CC----------------chHH-----HHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHH
Confidence 00 0111 4568888888887777655555555444444444
No 54
>KOG1060|consensus
Probab=98.25 E-value=0.0006 Score=85.78 Aligned_cols=428 Identities=15% Similarity=0.220 Sum_probs=237.3
Q ss_pred hcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccC
Q psy14676 864 LTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHT 943 (1827)
Q Consensus 864 l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~ 943 (1827)
|.++.+..++++.=..++.+++ |.. ...+.|.+++-....+.||+-.-- .+..++.. -.|-+.
T Consensus 44 LdSnkd~~KleAmKRIia~iA~--G~d----vS~~Fp~VVKNVaskn~EVKkLVy----vYLlrYAE-eqpdLA------ 106 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAK--GKD----VSLLFPAVVKNVASKNIEVKKLVY----VYLLRYAE-EQPDLA------ 106 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhc--CCc----HHHHHHHHHHHhhccCHHHHHHHH----HHHHHHhh-cCCCce------
Confidence 4445667777877777888876 444 445555566666667777743321 11111110 011000
Q ss_pred Ccchhhhh-HHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHH
Q psy14676 944 DLTSVADL-KQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAE 1022 (1827)
Q Consensus 944 ~~s~~~~L-~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e 1022 (1827)
.| ....-+.+.+.+..+|..|.+.+.++. +--+.|-.+-++-++..|.+.-||+.|+.
T Consensus 107 ------LLSIntfQk~L~DpN~LiRasALRvlSsIR---------------vp~IaPI~llAIk~~~~D~s~yVRk~AA~ 165 (968)
T KOG1060|consen 107 ------LLSINTFQKALKDPNQLIRASALRVLSSIR---------------VPMIAPIMLLAIKKAVTDPSPYVRKTAAH 165 (968)
T ss_pred ------eeeHHHHHhhhcCCcHHHHHHHHHHHHhcc---------------hhhHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 00 011224566677778877666554431 12245666677777778888999998888
Q ss_pred HHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhcccccccc---------------------------
Q psy14676 1023 CLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNH--------------------------- 1072 (1827)
Q Consensus 1023 ~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~--------------------------- 1072 (1827)
++-+|-...+++ ++..|...|.+.++.+--+|+-++..++-+.-+.+.+|
T Consensus 166 AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 166 AIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred hhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 888887776533 55555555544433333333333221111100111110
Q ss_pred -------------ccchh-----------hhhh-----hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCC
Q psy14676 1073 -------------NEETS-----------FIYS-----FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPS 1123 (1827)
Q Consensus 1073 -------------~~~~~-----------~~~~-----~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~ 1123 (1827)
.|+.. ...| =+.-|+...-.++...++.|..++++++-.++ |.
T Consensus 246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA----P~---- 317 (968)
T KOG1060|consen 246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA----PK---- 317 (968)
T ss_pred HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC----CH----
Confidence 00000 0000 12222233333333444444444443333322 20
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh-hHHHHHHHHHHHh
Q psy14676 1124 SYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI-TRLTTVKALTKIA 1202 (1827)
Q Consensus 1124 ~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~-tR~~av~al~~ia 1202 (1827)
..+..+..+++..|. ..++||...+.++..+.......+.||++..+ =+-.+.+ +..-=+..|+.++
T Consensus 318 -----~~~~~i~kaLvrLLr---s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v~ssDp~~vk~lKleiLs~La 385 (968)
T KOG1060|consen 318 -----NQVTKIAKALVRLLR---SNREVQYVVLQNIATISIKRPTLFEPHLKSFF----VRSSDPTQVKILKLEILSNLA 385 (968)
T ss_pred -----HHHHHHHHHHHHHHh---cCCcchhhhHHHHHHHHhcchhhhhhhhhceE----eecCCHHHHHHHHHHHHHHHh
Confidence 134455555555444 34567777788887777766666666655421 1111111 1223344455555
Q ss_pred cCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHH
Q psy14676 1203 ASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLL 1282 (1827)
Q Consensus 1203 ~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L 1282 (1827)
... -+..++.+|..+++..++.+-.+++.|++.++++.+. +-+..+..|..+++..|..|...+...+
T Consensus 386 ~es-------ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vI 453 (968)
T KOG1060|consen 386 NES-------NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVI 453 (968)
T ss_pred hhc-------cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHH
Confidence 422 2467788999999999988889999999998887544 3445677778899999999999999999
Q ss_pred HHHHHhCCCccch--------------h-hHHhhhhhcccccCCC--chhhHHHHHHHhcCCCCHhHHHHHHHHHhhh--
Q psy14676 1283 TSIAKIQPNALVE--------------P-AAASILPQIGRHTDLT--SVADLKQVILNAFTPTSEEVKSAASYTLGSI-- 1343 (1827)
Q Consensus 1283 ~~l~~~~~~~~~~--------------~-~i~~~lgeiG~~~~~~--~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i-- 1343 (1827)
..+.+..|..-.. | +=+.++|-+|.++... -.|++...+.+.|.++.++||..+...-..+
T Consensus 454 k~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 454 KRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred HHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 9999887753211 1 1234456666665221 2378889999999999999999775432232
Q ss_pred -hhhhhhhhHHHHHHhhhc
Q psy14676 1344 -AVGNLQQYVPFVLKEIEN 1361 (1827)
Q Consensus 1344 -~~~~l~~~LP~Il~~i~~ 1361 (1827)
...+.+.+...+++..+-
T Consensus 534 ~~~~~~kll~~Yv~~L~~y 552 (968)
T KOG1060|consen 534 TNIDQTKLLVQYVFELARY 552 (968)
T ss_pred echhhHHHHHHHHHHHhcc
Confidence 223345555666666554
No 55
>KOG1967|consensus
Probab=98.25 E-value=0.051 Score=70.53 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=119.5
Q ss_pred hhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14676 1081 SFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1081 ~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg 1160 (1827)
.|...++|.+++......-.++.--+.+++.+.+.+ ..+.+.|.+..++|.+++.|. =.|.+||-.+..++.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v------P~~vllp~~~~LlPLLLq~Ls--~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNV------PKQVLLPQFPMLLPLLLQALS--MPDVIVRVSTLRTIP 934 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcC------CHHhhccchhhHHHHHHHhcC--CCccchhhhHhhhhh
Confidence 457778888887776433344444455555555432 135677999999999999998 456678999999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhhhhh-----hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHH
Q psy14676 1161 QIICNLGDYLKSELPVCLPILLDRLRNEI-----TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLS 1235 (1827)
Q Consensus 1161 ~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~-----tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~ 1235 (1827)
.++...+.....++.+++|.++..-++.+ .|..|+++++.+......-.+-||.++++..+..-|.+..|-+|..
T Consensus 935 ~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~e 1014 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKE 1014 (1030)
T ss_pred HHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHH
Confidence 99998888888899999999987754222 3999999999999865566677899999999999999999999999
Q ss_pred HHHHHH
Q psy14676 1236 TLLLLD 1241 (1827)
Q Consensus 1236 al~aL~ 1241 (1827)
|.++=+
T Consensus 1015 Av~tR~ 1020 (1030)
T KOG1967|consen 1015 AVDTRQ 1020 (1030)
T ss_pred HHHHhh
Confidence 887543
No 56
>KOG1240|consensus
Probab=98.22 E-value=4.5e-05 Score=99.27 Aligned_cols=295 Identities=15% Similarity=0.151 Sum_probs=181.1
Q ss_pred chHHHHHHhccC-ChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSN-SALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1035 llP~L~~~L~s~-~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
+++.+.-++++- ....|..|+.+|..++....+..+ +++++|.++.+..|+..+||+.|+.++.++.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~------------LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L 490 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK------------LDRVLPYFVHLLMDSEADVRATALETLTELL 490 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH------------HhhhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 455555555443 356789999999877665443322 9999999999999999999999999999988
Q ss_pred HHhccCCCCCCCCcchhHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH-HHHHhhhhhhhH
Q psy14676 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAAD-IDQEVKERAISCMGQIICNLGDYLKSELPVCLP-ILLDRLRNEITR 1191 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D-~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~-~Ll~~L~~e~tR 1191 (1827)
..+++.- ..+-.-|.+-|+|.+-.-+. | ...-||-+-..+++.++..+-..+. ....+=. -+.+...+| |
T Consensus 491 ~~Vr~~~---~~daniF~eYlfP~L~~l~~--d~~~~~vRiayAsnla~LA~tA~rFle-~~q~~~~~g~~n~~nse-t- 562 (1431)
T KOG1240|consen 491 ALVRDIP---PSDANIFPEYLFPHLNHLLN--DSSAQIVRIAYASNLAQLAKTAYRFLE-LTQELRQAGMLNDPNSE-T- 562 (1431)
T ss_pred hhccCCC---cccchhhHhhhhhhhHhhhc--cCccceehhhHHhhHHHHHHHHHHHHH-HHHHHHhcccccCcccc-c-
Confidence 7776531 12222345556665544443 5 5566888888999998876533211 0000000 001111111 0
Q ss_pred HHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCC
Q psy14676 1192 LTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESD 1271 (1827)
Q Consensus 1192 ~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D 1271 (1827)
........++....+.+-..+.+++.|++.-+|.+-++.+..|+.-+|.+=..+ .+++.|...|+|.|
T Consensus 563 ---------~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND---~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 563 ---------APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSND---VILSHLITFLNDKD 630 (1431)
T ss_pred ---------ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccccc---chHHHHHHHhcCcc
Confidence 000000111111122233446678888988999999999999999887653333 47888899999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhh-hhhhh-
Q psy14676 1272 LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA-VGNLQ- 1349 (1827)
Q Consensus 1272 ~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~-~~~l~- 1349 (1827)
+++|.+-++-+..++- -+|.+- .-.-++|++.+.|.|..|-|-..|..+|..+. .|++.
T Consensus 631 w~LR~aFfdsI~gvsi----------------~VG~rs---~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSI----------------FVGWRS---VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred HHHHHHHHhhccceEE----------------EEeeee---HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence 9999986655433221 223321 12469999999999999999999988877644 34443
Q ss_pred hhHHHHHHhhhc---Cch--hhHHHHHHHHHHHhhc
Q psy14676 1350 QYVPFVLKEIEN---QPK--RQYLLLHSLKEIISWQ 1380 (1827)
Q Consensus 1350 ~~LP~Il~~i~~---~~~--~q~~~l~aL~Eii~~~ 1380 (1827)
+++-.|++.+-- -|+ .|+.++.-|.+++.++
T Consensus 692 ~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 692 PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 244444443221 121 3445555555555543
No 57
>KOG1020|consensus
Probab=98.22 E-value=0.0024 Score=85.77 Aligned_cols=512 Identities=14% Similarity=0.128 Sum_probs=275.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy14676 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120 (1827)
Q Consensus 41 ~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~ 120 (1827)
.++..+. ++.+.+|..|+.+|+.+.+-=+..+ .++.+...+-.-+.|....||++|+.-+|.++.+.++ ...++.+
T Consensus 820 ~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e-~~~qyY~ 895 (1692)
T KOG1020|consen 820 LILSVLG-ENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE-LIFQYYD 895 (1692)
T ss_pred HHHHHhc-CchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-HHHHHHH
Confidence 3344454 4578999999999999988644433 4678888888999999999999999999999998755 5567889
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHH-HHHHHhCCCcc-c---
Q psy14676 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQAC-EAFVQRCPKEI-T--- 195 (1827)
Q Consensus 121 ~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~al-e~~~~~~p~e~-~--- 195 (1827)
.+.+++..+ ...||+.++..+-.+|...|..-. +..++--|+.-.+|+.+.+.+.+.+.| ..|..-+|+.. .
T Consensus 896 ~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~ 972 (1692)
T KOG1020|consen 896 QIIERILDT-GVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAK 972 (1692)
T ss_pred HHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHH
Confidence 999998764 578999999999999999887422 344444455555655555777666655 56666666521 1
Q ss_pred -------------------cchHHHHHHHHHHhc-------cCCC-CC-ccc-cc-ccCCCCCCCCCCCCcccCCCCCCC
Q psy14676 196 -------------------PHIQSITELCLTYIT-------YDPN-YN-YED-EE-EGLGGEGGGEGMDTEEEDGEDEGE 245 (1827)
Q Consensus 196 -------------------p~l~~ii~~ll~~l~-------~dpn-~~-~~d-dd-~~~~~~~~~~~~d~~~~d~dde~e 245 (1827)
-++++++-.+++.-. +.|- +. ..- .+ ....-.....+.+.+
T Consensus 973 ~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~--------- 1043 (1692)
T KOG1020|consen 973 ARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESD--------- 1043 (1692)
T ss_pred HHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH---------
Confidence 112222222221100 0000 00 000 00 000000000000000
Q ss_pred CCCCCCCCccchhhHHH-HHHHHHHHHHHHcCCchh-hhHHhhhHHHHhhcCCCCHh-HHHHHHHHHHHHHhhhcccCCC
Q psy14676 246 DDNEYSDDDDMSWKVRR-AAAKCLEAIIATRRDLIG-DMYRLVSPPLIARFKEREEN-VKSDIFHAYMALLKGTRTFSPL 322 (1827)
Q Consensus 246 ~~~e~sdddD~sWkVRr-aAak~L~~l~~~~~~~l~-~~~~~v~p~L~~~l~e~ee~-VR~aa~~al~~ll~~~~~~~~~ 322 (1827)
+ .-+.+-++|. +....|..++..+|-++. .+...+-|+|...-+.+++. +-..+ ..+++++-+....
T Consensus 1044 ~------~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~v----i~Ile~VlPlv~~ 1113 (1692)
T KOG1020|consen 1044 D------MNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYV----IQILECVLPLVAN 1113 (1692)
T ss_pred h------hhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHH----HHHHHHHhhhhcc
Confidence 0 0001113454 455667778888898887 68888999998775555443 23333 3334443322111
Q ss_pred CCCCCCCCCCCCChHhhHHhh------------hHHHHHHHHHHhc--cCCHhHHHHHHHHHHHHHHhCccccc-C----
Q psy14676 323 TPSDPNQMDQEDSPLCLLSTQ------------VPSLVKALQCQLR--EKSIRTRQDCLALLRELVQTLPGCLA-P---- 383 (1827)
Q Consensus 323 ~~~~~~~~~~~~~~~~~l~~~------------lp~Iv~~l~~~L~--d~~~~vR~a~~~ll~~L~~vl~~~l~-~---- 383 (1827)
+ .+.....++.. +-..|+-+....+ -+..++..+|++.+-...+++.+... .
T Consensus 1114 ~---------sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~ 1184 (1692)
T KOG1020|consen 1114 P---------SESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIV 1184 (1692)
T ss_pred c---------hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 0 01222222221 2222222222222 24456666777776666666554432 1
Q ss_pred chhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCC--------CcccHHHHHHHHHHHHHHHHHh
Q psy14676 384 SLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD--------DDMSWKVRRAAAKCLEAIIATR 455 (1827)
Q Consensus 384 ~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~--------~d~~w~vr~~a~~~l~~l~~~~ 455 (1827)
..|.+...| ..+.--..|.-- ..+..++..+.++.+.-++.- .+..-.+|..|+..++-+|..+
T Consensus 1185 ~~p~l~Rsi-ftlG~l~Ryfdf-------~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~h 1256 (1692)
T KOG1020|consen 1185 NFPKLQRSI-FTLGLLSRYFDF-------PKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQH 1256 (1692)
T ss_pred hhHHHHHHH-HHHHHHHHhccC-------CCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhC
Confidence 223222222 111111111110 011111111111111000000 0011347999999999999999
Q ss_pred hhhhh-hhHHhhhhhHHHhhcch-hhh-hHHHHHHHHHHHH-------hhcccCCCCCCCCCcccccCCCccchhhchhh
Q psy14676 456 RDLIG-DMYRLVSPPLIARFKER-EEN-VKSDIFHAYMALL-------KGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVP 525 (1827)
Q Consensus 456 ~~~f~-~~~~~l~~~L~~~~~d~-~~~-Vr~~a~~~l~~L~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 525 (1827)
+..|. +.+-.+ +..-+++. ... -+..+++++..++ ...|..|..... ..+ .
T Consensus 1257 p~l~~~~~v~nl---y~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k---~ed-------------l 1317 (1692)
T KOG1020|consen 1257 PSLFTSREVLNL---YDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNK---SED-------------L 1317 (1692)
T ss_pred chhhhhHHHHHH---HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh---HHH-------------H
Confidence 97666 433333 33333333 222 3667777777764 233333332100 000 0
Q ss_pred HHHHHHHHHhhhhh--hhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhH
Q psy14676 526 SLVKALQCQLREKS--IRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEV 603 (1827)
Q Consensus 526 ~~~~~l~~~l~~~~--~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV 603 (1827)
.=+.......+... ....+.+|+.+++..-+.|-.+|..|++-+.-.+.+|.++- ...+|.|+.+-.|+..+.
T Consensus 1318 kem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP-----~~cvPtLIAL~Tdp~~~~ 1392 (1692)
T KOG1020|consen 1318 KEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP-----VHCVPTLIALETDPSQAI 1392 (1692)
T ss_pred HhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc-----cchhhhheeecCChHHHH
Confidence 00000011111110 11455678888888888888999999998888888877663 467888999999999999
Q ss_pred HHHHHHhhhhHHHHhh
Q psy14676 604 QNLAVKCLGPLFKALT 619 (1827)
Q Consensus 604 ~~~A~~~lg~l~~~~~ 619 (1827)
|+.|-..|..+=++-.
T Consensus 1393 r~~Ad~LL~eid~kY~ 1408 (1692)
T KOG1020|consen 1393 RHVADELLKEIDEKYE 1408 (1692)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 9999888776654433
No 58
>KOG1060|consensus
Probab=98.21 E-value=0.0047 Score=78.08 Aligned_cols=439 Identities=15% Similarity=0.152 Sum_probs=239.7
Q ss_pred hhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhcccccc
Q psy14676 994 LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIH 1070 (1827)
Q Consensus 994 l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~ 1070 (1827)
.+.+||... +...+...+|++.+.--|=+.+...|+- =+..+++.|+++++-.|..|+..|..+-.+.
T Consensus 69 vS~~Fp~VV----KNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~----- 139 (968)
T KOG1060|consen 69 VSLLFPAVV----KNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPM----- 139 (968)
T ss_pred HHHHHHHHH----HHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh-----
Confidence 344555544 4446667777776665565556555543 2568999999999999999999887542211
Q ss_pred ccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHH
Q psy14676 1071 NHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQE 1150 (1827)
Q Consensus 1071 ~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~e 1150 (1827)
..|-++-.|.+++.|..+.||..|..++..+.. ++ .+..+ +|.+.+-.-|. |.++-
T Consensus 140 -----------IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld-------~e~k~---qL~e~I~~LLa--D~spl 195 (968)
T KOG1060|consen 140 -----------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LD-------PEQKD---QLEEVIKKLLA--DRSPL 195 (968)
T ss_pred -----------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CC-------hhhHH---HHHHHHHHHhc--CCCCc
Confidence 022344456678899999999999888877764 22 12223 33333333333 88999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh-HHHHHHHHHHHhcCCCc---c----------------cc
Q psy14676 1151 VKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT-RLTTVKALTKIAASPLR---I----------------DL 1210 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t-R~~av~al~~ia~~~~~---~----------------dl 1210 (1827)
|-.+|+.|+..+-..-=+.+-+++..+-..|.+ -++| ..-.+..|...|..... . ..
T Consensus 196 VvgsAv~AF~evCPerldLIHknyrklC~ll~d---vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~ 272 (968)
T KOG1060|consen 196 VVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPD---VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKY 272 (968)
T ss_pred chhHHHHHHHHhchhHHHHhhHHHHHHHhhccc---hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccc
Confidence 999999999887655444555555554333322 2455 45555555555542210 0 00
Q ss_pred ----chhhh-----hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHH
Q psy14676 1211 ----RPILT-----DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTL 1281 (1827)
Q Consensus 1211 ----~p~~~-----~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~ 1281 (1827)
.||+. -++.....++-..+.++-.++..++..++- +.-...++..|.+++..+. .++...+..
T Consensus 273 ~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP-------~~~~~~i~kaLvrLLrs~~-~vqyvvL~n 344 (968)
T KOG1060|consen 273 NEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP-------KNQVTKIAKALVRLLRSNR-EVQYVVLQN 344 (968)
T ss_pred cccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC-------HHHHHHHHHHHHHHHhcCC-cchhhhHHH
Confidence 12221 122222223334445555555555544322 1233445555555555432 334444444
Q ss_pred HHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhc---CCCCHhHHHHHHHHHhhhh-hhhhhhhHHHHHH
Q psy14676 1282 LTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAF---TPTSEEVKSAASYTLGSIA-VGNLQQYVPFVLK 1357 (1827)
Q Consensus 1282 L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~---~~~s~eVr~aAa~aLG~i~-~~~l~~~LP~Il~ 1357 (1827)
+..++...| .++.-.++.| .+++..++.-=..-|.+++ .+|++.+|+.+..
T Consensus 345 Ia~~s~~~~-------------------------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 345 IATISIKRP-------------------------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT 399 (968)
T ss_pred HHHHHhcch-------------------------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 444443222 2222233333 2233445554455566643 4688888888888
Q ss_pred hhhcCchhhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCc---chH
Q psy14676 1358 EIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSN---LLP 1433 (1827)
Q Consensus 1358 ~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~---~lP 1433 (1827)
.+.+.++ + ++--+++-+-.+... .....+ |+.++...+-. .++.|-..+.--+.+|...+|.. ++-
T Consensus 400 YI~s~d~-~-faa~aV~AiGrCA~~----~~sv~~tCL~gLv~Llss----hde~Vv~eaV~vIk~Llq~~p~~h~~ii~ 469 (968)
T KOG1060|consen 400 YIKSSDR-S-FAAAAVKAIGRCASR----IGSVTDTCLNGLVQLLSS----HDELVVAEAVVVIKRLLQKDPAEHLEILF 469 (968)
T ss_pred HHhcCch-h-HHHHHHHHHHHHHHh----hCchhhHHHHHHHHHHhc----ccchhHHHHHHHHHHHHhhChHHHHHHHH
Confidence 8877544 2 333333333222111 112333 66666555544 46777777778899999988853 666
Q ss_pred HHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1434 RLQESLKS-NSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1434 ~L~~~l~~-~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
+|...+.+ .-+..|++++=-+..-+... ++..-+++..+.+...|+.+.||
T Consensus 470 ~La~lldti~vp~ARA~IiWLige~~e~v----------------------------pri~PDVLR~laksFs~E~~evK 521 (968)
T KOG1060|consen 470 QLARLLDTILVPAARAGIIWLIGEYCEIV----------------------------PRIAPDVLRKLAKSFSDEGDEVK 521 (968)
T ss_pred HHHHHhhhhhhhhhhceeeeeehhhhhhc----------------------------chhchHHHHHHHHhhccccchhh
Confidence 77666643 23444544443232222111 11223444555566789999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHh
Q psy14676 1513 NLAVKCLGPLVNKVKEFQVETIVDALCS 1540 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~~~~~~v~~l~~ 1540 (1827)
......-.+|.-. +.++.+.++.-.+.
T Consensus 522 lQILnL~aKLyl~-~~~~~kll~~Yv~~ 548 (968)
T KOG1060|consen 522 LQILNLSAKLYLT-NIDQTKLLVQYVFE 548 (968)
T ss_pred HHHHHhhhhheEe-chhhHHHHHHHHHH
Confidence 9888887777532 23334444444443
No 59
>KOG4224|consensus
Probab=98.20 E-value=0.00018 Score=82.79 Aligned_cols=401 Identities=16% Similarity=0.181 Sum_probs=228.2
Q ss_pred hcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh-hh
Q psy14676 1094 VGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYL-KS 1172 (1827)
Q Consensus 1094 l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l-~~ 1172 (1827)
..|....+++.++....-.-+.++.. -.+..+.++..++ ..|+.++.+|..++|.++-+.+... --
T Consensus 57 ySDnlnlqrsaalafAeitek~vr~V-----------sres~epvl~llq--s~d~~Iq~aa~~alGnlAVn~enk~liv 123 (550)
T KOG4224|consen 57 YSDNLNLQRSAALAFAEITEKGVRRV-----------SRESNEPVLALLQ--SCDKCIQCAAGEALGNLAVNMENKGLIV 123 (550)
T ss_pred eccccccchHHHHHHHHHHHHHHHHh-----------hhhhhhHHHHHHh--CcchhhhhhhhhhhccceeccCCceEEE
Confidence 35666667777665444333333311 1122233333444 6788999999999999887776521 12
Q ss_pred hhhhhHHHHHHhhhhhh-hHHHHHHHHHHHhcCCC-ccccchhh-hhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCC
Q psy14676 1173 ELPVCLPILLDRLRNEI-TRLTTVKALTKIAASPL-RIDLRPIL-TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPS 1249 (1827)
Q Consensus 1173 ~l~~lL~~Ll~~L~~e~-tR~~av~al~~ia~~~~-~~dl~p~~-~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~ 1249 (1827)
.+.-+=+.+.+.+.+.. .|.-+++++..++.... +. .+. ...+..+.++-+..+-.+|..+.++|-.+-...-.
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~---kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En 200 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV---KIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN 200 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh---hhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh
Confidence 23333334555555443 38888999988885321 10 111 12344455533323455777888888776554332
Q ss_pred C---cChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcC
Q psy14676 1250 A---ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFT 1326 (1827)
Q Consensus 1250 ~---l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~ 1326 (1827)
+ ... +-+|.|..++...|+.++..+...++.++.. +..|+.-...-|.+++.+...+.
T Consensus 201 Rr~LV~a----G~lpvLVsll~s~d~dvqyycttaisnIaVd---------------~~~Rk~Laqaep~lv~~Lv~Lmd 261 (550)
T KOG4224|consen 201 RRVLVHA----GGLPVLVSLLKSGDLDVQYYCTTAISNIAVD---------------RRARKILAQAEPKLVPALVDLMD 261 (550)
T ss_pred hhhhhcc----CCchhhhhhhccCChhHHHHHHHHhhhhhhh---------------HHHHHHHHhcccchHHHHHHHHh
Confidence 2 122 2345667788889999988877777665531 11122101122679999999999
Q ss_pred CCCHhHHHHHHHHHhhhhhhh------h-hhhHHHHHHhhhcCchhhHHHH---HHHHHHHhhccccccchhhh---hch
Q psy14676 1327 PTSEEVKSAASYTLGSIAVGN------L-QQYVPFVLKEIENQPKRQYLLL---HSLKEIISWQSTSTSGVAQL---QQF 1393 (1827)
Q Consensus 1327 ~~s~eVr~aAa~aLG~i~~~~------l-~~~LP~Il~~i~~~~~~q~~~l---~aL~Eii~~~~~s~~g~~~L---~~~ 1393 (1827)
++++.||-.|..|||+++... . .--+|.+++.+++.. --+++ .+++-+-.+. |.+.+ ..|
T Consensus 262 ~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~--~plilasVaCIrnisihp-----lNe~lI~dagf 334 (550)
T KOG4224|consen 262 DGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM--GPLILASVACIRNISIHP-----LNEVLIADAGF 334 (550)
T ss_pred CCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc--hhHHHHHHHHHhhccccc-----Ccccceecccc
Confidence 999999999999999976532 1 124677777775531 12233 3333322111 01111 124
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhc--------cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCC
Q psy14676 1394 VPAIWAQLFLHCECQEEGTRNVVAECLGKLTL--------IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSS 1465 (1827)
Q Consensus 1394 ~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~--------~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~ 1465 (1827)
+.-+...|-. .++|++.-.|...|-.|+- +..+.-+|.|.+++.+..-.+|.-+--++..+.-.
T Consensus 335 l~pLVrlL~~---~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~----- 406 (550)
T KOG4224|consen 335 LRPLVRLLRA---GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN----- 406 (550)
T ss_pred hhHHHHHHhc---CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-----
Confidence 3333333322 3345455556566666654 33457789999999877665554443333332210
Q ss_pred ChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhh-hh-H-------HHHHH
Q psy14676 1466 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKE-FQ-V-------ETIVD 1536 (1827)
Q Consensus 1466 d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~-~~-~-------~~~v~ 1536 (1827)
+..+ ++| + -..++|.++.+..+...+||-||+++|+.+...++. .. . ..+-.
T Consensus 407 -d~~k----~~l---l-----------d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g 467 (550)
T KOG4224|consen 407 -DNDK----EAL---L-----------DSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQG 467 (550)
T ss_pred -cccH----HHH---h-----------hcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHH
Confidence 0111 001 1 123568888899999999999999999999987642 11 1 11112
Q ss_pred HHHhhhcccccccccCCccchhHHHHHHHhhhhcc
Q psy14676 1537 ALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRN 1571 (1827)
Q Consensus 1537 ~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~ 1571 (1827)
-|.+.+.++.. .+|+.|.+|+--.+|.
T Consensus 468 ~L~Rfl~S~~~--------tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 468 RLARFLASHEL--------TFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHHHhhhHH--------HHHHHHHHHHHHHHHh
Confidence 24444444333 7899999998777664
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.18 E-value=0.0026 Score=80.47 Aligned_cols=347 Identities=17% Similarity=0.200 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhccCCC-----CchhH-HHHHHHhhhcC-----CCC--HHH
Q psy14676 33 NVCRRITGKLSTAIE----KQEDVSVQLEALDILSDLLSRFGALL-----PSFHF-VILTALLPQLS-----SPR--QAV 95 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~l~----~~~~~~v~~~al~iL~~l~~~~~~~l-----~~~~~-~il~~ll~~L~-----~~~--~~V 95 (1827)
.+.+.++|+|++.+. ...+.+.....+..|..+++...... ..|.. .+++.++.... +.+ ..+
T Consensus 34 ~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~ 113 (415)
T PF12460_consen 34 QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRV 113 (415)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHH
Confidence 456777777776653 23367778889999999988876544 11323 36666665531 222 566
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhcc---------CCCC--HHHHHHHHHHHHHHHHHhch-hhHHhHHHHHHH
Q psy14676 96 RKRTIVALSHLVMSCNLQLYTKLIDFLLEGLT---------TNKS--TSTNRTYIQCFAAICRQAGH-RFAEHIERVMPL 163 (1827)
Q Consensus 96 Rk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~---------~~~~--~~~r~~ai~~l~~la~~~~~-~~~p~l~~i~p~ 163 (1827)
=..+...++.++..++.+.-++++..+...+. .... .......+..+.++.....+ .-.|+..+++.-
T Consensus 114 L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~ 193 (415)
T PF12460_consen 114 LELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQS 193 (415)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHH
Confidence 66677777777778877655555555554332 1111 12334444455555544433 223456666666
Q ss_pred HHhhc-ccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCC
Q psy14676 164 ILKYS-REEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGED 242 (1827)
Q Consensus 164 l~~~~-~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dd 242 (1827)
+++.. +.+++..|..+++.+..++.+++.+= ++..++......+... . +
T Consensus 194 l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~-------~---------------------~ 243 (415)
T PF12460_consen 194 LLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSS-------E---------------------D 243 (415)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhccc-------C---------------------C
Confidence 66654 33457788899999999999886531 4445555554433000 0 0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCC
Q psy14676 243 EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPL 322 (1827)
Q Consensus 243 e~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~ 322 (1827)
+ ..|..+...+.-+.++.=-...+....++..|++.+.+ +++...+..+|+-++.-....
T Consensus 244 --------~-------~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~--- 303 (415)
T PF12460_consen 244 --------S-------ELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDV--- 303 (415)
T ss_pred --------c-------chhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHh---
Confidence 0 11222223332222221001123445556667777765 888999999999888531111
Q ss_pred CCCCCCCCCCCCC--hH-hhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc-cccCchhhHHHHHHHHhhh
Q psy14676 323 TPSDPNQMDQEDS--PL-CLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG-CLAPSLPALIPDVTSVAEW 398 (1827)
Q Consensus 323 ~~~~~~~~~~~~~--~~-~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~-~l~~~l~~Llp~i~~~L~~ 398 (1827)
.....+ ++ -+-+.....++|.+++..++.+...|..++..+..+....|. .+.++++.|+|.+.++|.-
T Consensus 304 -------l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 304 -------LNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred -------cCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 011111 11 233456778888888888888777999999999999999997 4589999999999999821
Q ss_pred hhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHh
Q psy14676 399 DEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 473 (1827)
Q Consensus 399 ~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~ 473 (1827)
.+..++.++++++..+....++.+.+|++.++|.|++.
T Consensus 377 -------------------------------------~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 377 -------------------------------------PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred -------------------------------------CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 12349999999999999999999999999999998763
No 61
>KOG1062|consensus
Probab=98.12 E-value=0.0032 Score=80.08 Aligned_cols=384 Identities=15% Similarity=0.186 Sum_probs=217.0
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhcccCC-CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLIDP-SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~-~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.+.+-|++..--+--.|..+||.++.-.. ..+.|.+.+.++..++..|..|+...-.+....++.
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l------------- 176 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL------------- 176 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH-------------
Confidence 444433444444444445555666554322 458888888888888888887777777666665544
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHH------------------HHHHHHhccCC------CC-CCCCcchhHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVL------------------QQFVKVIRPLT------SP-SSYDFAPFTSDIYQ 1136 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l------------------~~lv~~l~~~~------~~-~~~~~~~~l~~l~~ 1136 (1827)
+.-+++...+.++|.++.|-..++..+ +.|++.++.+- .+ -++--.||++--+=
T Consensus 177 -~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 177 -VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred -HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 445677777888888876644333322 33444444221 00 01112366653333
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh--hhh-hhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchh
Q psy14676 1137 CTLVRLKAADIDQEVKERAISCMGQIICNLGD--YLK-SELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPI 1213 (1827)
Q Consensus 1137 ~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~--~l~-~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~ 1213 (1827)
.++.-|..+|. +-.+.-...|++++.++.. ..+ .-+-+++-.++..-.+..-|..|+..||
T Consensus 256 rlLriLGq~d~--daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLg-------------- 319 (866)
T KOG1062|consen 256 RLLRILGQNDA--DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILG-------------- 319 (866)
T ss_pred HHHHHhcCCCc--cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHH--------------
Confidence 34444553333 3344444445554444311 000 1233333334333333333555555444
Q ss_pred hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCcc
Q psy14676 1214 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL 1293 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~ 1293 (1827)
.||...+..+|..++..|..+++.-++. ++.=-..+..-+.|.|..++.-+++.+-.+....
T Consensus 320 ---------kFL~n~d~NirYvaLn~L~r~V~~d~~a-----vqrHr~tIleCL~DpD~SIkrralELs~~lvn~~---- 381 (866)
T KOG1062|consen 320 ---------KFLLNRDNNIRYVALNMLLRVVQQDPTA-----VQRHRSTILECLKDPDVSIKRRALELSYALVNES---- 381 (866)
T ss_pred ---------HHhcCCccceeeeehhhHHhhhcCCcHH-----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc----
Confidence 4554455668888888888777653332 2222223345568999999999999887766521
Q ss_pred chhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh---hhhhHHHHHHhhhcCc-hhhHHH
Q psy14676 1294 VEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN---LQQYVPFVLKEIENQP-KRQYLL 1369 (1827)
Q Consensus 1294 ~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~---l~~~LP~Il~~i~~~~-~~q~~~ 1369 (1827)
.+..+..-++..+...++++|..-+..+-.++-.. =.=|+.++++-+...+ =.++-.
T Consensus 382 -------------------Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv 442 (866)
T KOG1062|consen 382 -------------------NVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDV 442 (866)
T ss_pred -------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhh
Confidence 23456777788888888999998887766654321 1225556665554322 234556
Q ss_pred HHHHHHHHhhccccccchhhhhch-HHHHHHHHhhh--hcCCchhHHHHHHHHHHHhh-------------ccCCCcchH
Q psy14676 1370 LHSLKEIISWQSTSTSGVAQLQQF-VPAIWAQLFLH--CECQEEGTRNVVAECLGKLT-------------LIDPSNLLP 1433 (1827)
Q Consensus 1370 l~aL~Eii~~~~~s~~g~~~L~~~-~~~i~~~L~~~--~~~~~e~vR~~aAecLGkL~-------------~~~p~~~lP 1433 (1827)
++.+..+|... ...+..| +..+|..+... ..-+++..-.+++.|||.-+ .+.++.++.
T Consensus 443 ~~nll~LIa~~------~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd 516 (866)
T KOG1062|consen 443 VNNLLRLIANA------FQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVD 516 (866)
T ss_pred HHHHHHHHhcC------CcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHH
Confidence 77777777621 1223232 23445444442 12345567788999999988 333467778
Q ss_pred HHHHhhh--cCCHHHHHHHHHHHHHHhh
Q psy14676 1434 RLQESLK--SNSALMRTTVLTAVKFTIS 1459 (1827)
Q Consensus 1434 ~L~~~l~--~~~~~~R~t~l~Alk~~~~ 1459 (1827)
.|.+.+. +.+..+|.-++.|+-.+-+
T Consensus 517 ~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 517 KLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 8888775 3467788888888776654
No 62
>KOG1240|consensus
Probab=98.10 E-value=0.0002 Score=93.59 Aligned_cols=289 Identities=15% Similarity=0.122 Sum_probs=183.4
Q ss_pred hhhhhhhcch-hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhh
Q psy14676 1219 PILGSFLRKN-QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 1297 (1827)
Q Consensus 1219 ~~L~~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~ 1297 (1827)
+.+.+-+|.- .+..|.++++.|..|.....+ ..-++.++|.+..++.|++..||..|++.|+.+...-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr------- 494 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR------- 494 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-------
Confidence 3444444422 255778888888877665332 23678899999999999999999999999998775211
Q ss_pred HHhhhhhcccccCCCchhhHHHHHHHhcCC-CCHhHHHHHHHHHhhhhhhhhhhhHHHHHH--h--hhcCchhhHHHHHH
Q psy14676 1298 AASILPQIGRHTDLTSVADLKQVILNAFTP-TSEEVKSAASYTLGSIAVGNLQQYVPFVLK--E--IENQPKRQYLLLHS 1372 (1827)
Q Consensus 1298 i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~-~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~--~--i~~~~~~q~~~l~a 1372 (1827)
.+-+.--.-+.+-++|.+-....| ...-||.+-|..|+.++..... |+-.-.+ . +.+.+..+ .
T Consensus 495 ------~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r-Fle~~q~~~~~g~~n~~nse-----t 562 (1431)
T KOG1240|consen 495 ------DIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR-FLELTQELRQAGMLNDPNSE-----T 562 (1431)
T ss_pred ------CCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH-HHHHHHHHHhcccccCcccc-----c
Confidence 111100011334577877777777 4556999889888887654321 2111111 1 11211111 0
Q ss_pred HHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-----cchHHHHHhhhcCCHHHH
Q psy14676 1373 LKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-----NLLPRLQESLKSNSALMR 1447 (1827)
Q Consensus 1373 L~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-----~~lP~L~~~l~~~~~~~R 1447 (1827)
..| . -+..++......+-..+...+.+++.-||..--+.|+.|+..+.+ .++++|..+|++.+...|
T Consensus 563 ~~~--~------~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR 634 (1431)
T KOG1240|consen 563 APE--Q------NYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLR 634 (1431)
T ss_pred ccc--c------ccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHH
Confidence 000 0 001111111222222223333455567899888999999998863 799999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhh--
Q psy14676 1448 TTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNK-- 1525 (1827)
Q Consensus 1448 ~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~-- 1525 (1827)
.+-...|-++..-.+.. -+.+-++|.+.+.+.|+++.|..+|..|+..|++.
T Consensus 635 ~aFfdsI~gvsi~VG~r--------------------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 635 GAFFDSIVGVSIFVGWR--------------------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred HHHHhhccceEEEEeee--------------------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 88776666543322211 02234679999999999999999999999999964
Q ss_pred hhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhcc
Q psy14676 1526 VKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRN 1571 (1827)
Q Consensus 1526 l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~ 1571 (1827)
+.+-.+.++++..+--+...|. =+||.++..+-++++.
T Consensus 689 l~K~~v~~i~~~v~PlL~hPN~--------WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 689 LRKPAVKDILQDVLPLLCHPNL--------WIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cchHHHHHHHHhhhhheeCchH--------HHHHHHHHHHHHHHhh
Confidence 4455666666655544555444 7999999999888874
No 63
>KOG4224|consensus
Probab=98.09 E-value=0.00055 Score=78.96 Aligned_cols=336 Identities=14% Similarity=0.115 Sum_probs=195.2
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhcc--ccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQR--NDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQF 1112 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~--~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~l 1112 (1827)
+.|..+ .-++.+-..|..+..+|..+..... ..+.. .--+|.++.+++..++.++--+..+++.+
T Consensus 169 L~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~------------aG~lpvLVsll~s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 169 LEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVH------------AGGLPVLVSLLKSGDLDVQYYCTTAISNI 235 (550)
T ss_pred hhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhc------------cCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence 444443 5577777778777777765433221 11111 12467788888888888887777777766
Q ss_pred HHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--
Q psy14676 1113 VKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT-- 1190 (1827)
Q Consensus 1113 v~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t-- 1190 (1827)
.-.-+. + ..+..-=+++++.+++-+. |.++.||-.|--+++.+.+.+.+...-.-..-+|.+++.+++...
T Consensus 236 aVd~~~-R----k~Laqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pl 308 (550)
T KOG4224|consen 236 AVDRRA-R----KILAQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPL 308 (550)
T ss_pred hhhHHH-H----HHHHhcccchHHHHHHHHh--CCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhH
Confidence 532100 0 0000011234455555554 778899999999999999877654433344567888888877665
Q ss_pred HHHHHHHHHHHhcCCCccccchhhh-hhHhhhhhhhcch-hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC
Q psy14676 1191 RLTTVKALTKIAASPLRIDLRPILT-DGIPILGSFLRKN-QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS 1268 (1827)
Q Consensus 1191 R~~av~al~~ia~~~~~~dl~p~~~-~~l~~L~~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~ 1268 (1827)
=++.+.++..|+-++++. .++.. ..+..|.++||-. +.+.+-.+...|..|+.++......-.-.+.++-+..++.
T Consensus 309 ilasVaCIrnisihplNe--~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 309 ILASVACIRNISIHPLNE--VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred HHHHHHHHhhcccccCcc--cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh
Confidence 355566666666655432 22322 2345577777744 4568889999999988754332111011135566677888
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhh
Q psy14676 1269 ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNL 1348 (1827)
Q Consensus 1269 d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l 1348 (1827)
|....++.-.-.+++.++-..-. +.. +. -..++|+++....+.++|||.+||.||++.+. +.
T Consensus 387 D~pvsvqseisac~a~Lal~d~~---------------k~~-ll-d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss-~v 448 (550)
T KOG4224|consen 387 DGPVSVQSEISACIAQLALNDND---------------KEA-LL-DSGIIPILIPWTGSESEEVRGNAAAALINLSS-DV 448 (550)
T ss_pred cCChhHHHHHHHHHHHHHhcccc---------------HHH-Hh-hcCCcceeecccCccchhhcccHHHHHHhhhh-hh
Confidence 88877777665566555442111 100 00 12477888888899999999999999999764 22
Q ss_pred hhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC
Q psy14676 1349 QQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP 1428 (1827)
Q Consensus 1349 ~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p 1428 (1827)
..|-- +.|.+.+. . ..|...|.+.+.+.+-..|..+..++-.|..-+-
T Consensus 449 ~~Yar-------------------viEawd~P------~-------~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 449 EHYAR-------------------VIEAWDHP------V-------QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHH-------------------HHHHhcCc------c-------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 22221 22222211 0 1222333333344555567777777777765332
Q ss_pred CcchHHHHHhhhcCCHHH
Q psy14676 1429 SNLLPRLQESLKSNSALM 1446 (1827)
Q Consensus 1429 ~~~lP~L~~~l~~~~~~~ 1446 (1827)
|.+..+.++.+..+
T Consensus 497 ----~~~~~~i~~~ddii 510 (550)
T KOG4224|consen 497 ----LPLTAFIQSSDDII 510 (550)
T ss_pred ----ccHHHHHhCchhHH
Confidence 45566666665544
No 64
>KOG1059|consensus
Probab=98.09 E-value=0.0099 Score=74.69 Aligned_cols=338 Identities=12% Similarity=0.135 Sum_probs=197.7
Q ss_pred HHHHHhhhcccCC-CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc
Q psy14676 1020 VAECLGKLTLIDP-SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF 1098 (1827)
Q Consensus 1020 a~e~Lg~L~~~~~-~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~ 1098 (1827)
|..+|..++...+ ..+-+.+...|.++.+.+|.-|+.++-.+.-.-++. +..-.|.+..-+.|++
T Consensus 129 AL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--------------lr~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--------------LRPCFPRLVEKLEDPD 194 (877)
T ss_pred eecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--------------HhhhHHHHHHhccCCC
Confidence 4455555544433 457888888899999999888877776444444444 5566788889999999
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh--hhhhh-h
Q psy14676 1099 YKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDY--LKSEL-P 1175 (1827)
Q Consensus 1099 ~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~--l~~~l-~ 1175 (1827)
|.|.++|..++.+|++- .+..+.++.+.+|. -+...+.+. .+-.+++.+|.. +.|.+ .
T Consensus 195 p~V~SAAV~VICELArK-------nPknyL~LAP~ffk----llttSsNNW--------mLIKiiKLF~aLtplEPRLgK 255 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARK-------NPQNYLQLAPLFYK----LLVTSSNNW--------VLIKLLKLFAALTPLEPRLGK 255 (877)
T ss_pred chHHHHHHHHHHHHHhh-------CCcccccccHHHHH----HHhccCCCe--------ehHHHHHHHhhccccCchhhh
Confidence 99999999999999963 22334444444444 233233333 344555555542 33544 3
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHHHHHhcCC---CccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcC
Q psy14676 1176 VCLPILLDRLRNEITRLTTVKALTKIAASP---LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIS 1252 (1827)
Q Consensus 1176 ~lL~~Ll~~L~~e~tR~~av~al~~ia~~~---~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~ 1252 (1827)
.++|.|.+.+++...-.---.++-++++.. +..|-+.-+.-+++-|..|+.+++..+|.-.+-|++.+++.++..+.
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq 335 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ 335 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH
Confidence 578888877776554333333444444321 11122334455778888899999999999999999999987665443
Q ss_pred hHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCC-Hh
Q psy14676 1253 TEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTS-EE 1331 (1827)
Q Consensus 1253 ~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s-~e 1331 (1827)
.. . .-+.+.+.|.|..+|--++..|-.++... .+..+...+..++.... ..
T Consensus 336 a~-k----dlIlrcL~DkD~SIRlrALdLl~gmVskk-----------------------Nl~eIVk~LM~~~~~ae~t~ 387 (877)
T KOG1059|consen 336 AH-K----DLILRCLDDKDESIRLRALDLLYGMVSKK-----------------------NLMEIVKTLMKHVEKAEGTN 387 (877)
T ss_pred Hh-H----HHHHHHhccCCchhHHHHHHHHHHHhhhh-----------------------hHHHHHHHHHHHHHhccchh
Confidence 21 1 12256788999999999999887766521 11223333333333222 23
Q ss_pred HHHHHHHHHhhh-------hhhhhhhhHHHHHHhhhcCchhh-HHHHHHHHHHHhhccccccchhhhhchHH-HHHHHHh
Q psy14676 1332 VKSAASYTLGSI-------AVGNLQQYVPFVLKEIENQPKRQ-YLLLHSLKEIISWQSTSTSGVAQLQQFVP-AIWAQLF 1402 (1827)
Q Consensus 1332 Vr~aAa~aLG~i-------~~~~l~~~LP~Il~~i~~~~~~q-~~~l~aL~Eii~~~~~s~~g~~~L~~~~~-~i~~~L~ 1402 (1827)
-|-.-...+=.+ .+.++.=|+..+++..+=.+... ..+-+-+..+..+ ...+++|.- +.|..+.
T Consensus 388 yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iR-------V~~iR~fsV~~m~~Ll~ 460 (877)
T KOG1059|consen 388 YRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIR-------VPSIRPFSVSQMSALLD 460 (877)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHhee-------chhhhHhHHHHHHHHHh
Confidence 343333332222 23567778888887764322222 1222333333221 345777554 4444444
Q ss_pred hh-----hc-CC-chhHHHHHHHHHHHhhc
Q psy14676 1403 LH-----CE-CQ-EEGTRNVVAECLGKLTL 1425 (1827)
Q Consensus 1403 ~~-----~~-~~-~e~vR~~aAecLGkL~~ 1425 (1827)
.. +. +. --++-.+||-|+|..+.
T Consensus 461 ~~~~~~s~q~n~~l~eVL~AaaWi~GEyse 490 (877)
T KOG1059|consen 461 DPLLAGSAQINSQLCEVLYAAAWILGEYSE 490 (877)
T ss_pred chhhccchhhccchhHHHHHHHHHHHHHHH
Confidence 22 11 11 12355568999999886
No 65
>KOG1967|consensus
Probab=98.04 E-value=0.13 Score=67.12 Aligned_cols=229 Identities=16% Similarity=0.197 Sum_probs=133.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhh--hhHHHHHHHHHHHhhhcHHHH
Q psy14676 776 LHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSC--NLQLTIVALSHLVMSCNLQLY 853 (1827)
Q Consensus 776 ~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~r~~Ai~aL~~l~~~~~~~~~ 853 (1827)
.+.+|+..++----++.--.-+++.+...+++..+++ +.+++-.-.+|+-++.-+ .+++.=.|-.. ..--+.+|
T Consensus 790 ls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~r--iLykQRfF 865 (1030)
T KOG1967|consen 790 LSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPR--ILYKQRFF 865 (1030)
T ss_pred hhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchh--HHHHHHHH
Confidence 3445554433322222222233455666788888876 333332222444222111 11111111100 13346688
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccc-cchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcc
Q psy14676 854 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH-RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEI 932 (1827)
Q Consensus 854 ~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~-~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i 932 (1827)
..+.+.+++.+.+ ....+|-.++.++..+-...|. .+.|.++.++|.+++++.=.|..+|..+++.+..++...++-+
T Consensus 866 ~~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFET-APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 8888888888773 3345677777777766665554 5889999999999999988888888777666655444333333
Q ss_pred ccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhcc
Q psy14676 933 TPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQ 1012 (1827)
Q Consensus 933 ~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~ 1012 (1827)
..|++.
T Consensus 945 t~~~~T-------------------------------------------------------------------------- 950 (1030)
T KOG1967|consen 945 TEHLST-------------------------------------------------------------------------- 950 (1030)
T ss_pred hHHHhH--------------------------------------------------------------------------
Confidence 333221
Q ss_pred ccchhhHHHHHHhhhcccCCCCchHHHHHHhccCC---hhhHHHHHHHHHHHHH-hccccccccccchhhhhhhhhhhhH
Q psy14676 1013 EEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNS---ALMRTTHQSNQTFNVI-IQRNDIHNHNEETSFIYSFYYFLLS 1088 (1827)
Q Consensus 1013 e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~---~~~R~~a~~~L~~l~~-~~~~~l~~~~~~~~~~~~~l~~Lip 1088 (1827)
++|.+.-.-++.+ ..+|+.|++.|+.+.. .....+.+| -+..+.
T Consensus 951 ----------------------lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f----------r~~Vl~ 998 (1030)
T KOG1967|consen 951 ----------------------LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF----------RPLVLR 998 (1030)
T ss_pred ----------------------HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc----------cHHHHH
Confidence 2222222222222 3456666666665555 233344444 899999
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHH
Q psy14676 1089 PVIASVGDNFYKITAEALLVLQQFVKV 1115 (1827)
Q Consensus 1089 ~l~~~l~D~~~~V~~eAl~~l~~lv~~ 1115 (1827)
.+.+.+.|+-..||.||.++=+.|...
T Consensus 999 al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 999 ALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred HhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999887777643
No 66
>KOG1020|consensus
Probab=98.04 E-value=0.18 Score=68.73 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhccCC-CCCCCCcchhHHHHHHHHH---HHHhhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhhhhhh
Q psy14676 1103 AEALLVLQQFVKVIRPLT-SPSSYDFAPFTSDIYQCTL---VRLKAADIDQEVKERAISCMGQIICNLGD-YLKSELPVC 1177 (1827)
Q Consensus 1103 ~eAl~~l~~lv~~l~~~~-~~~~~~~~~~l~~l~~~ll---~~L~~~D~d~eVre~Ai~alg~l~~~~g~-~l~~~l~~l 1177 (1827)
...+-++|.|.+...-+. ...+..+..+...+.+.++ ..+. .+.+.++|..|+.+||.+...-.. ...+++..+
T Consensus 1190 ~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~-k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nl 1268 (1692)
T KOG1020|consen 1190 QRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFS-KDKDGELRRKALINLGFICIQHPSLFTSREVLNL 1268 (1692)
T ss_pred HHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHH
Confidence 345667777777543221 1111111111223333332 2222 356799999999999998766544 344566665
Q ss_pred HHHHHHhhhhhhh-HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCC----cC
Q psy14676 1178 LPILLDRLRNEIT-RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA----IS 1252 (1827)
Q Consensus 1178 L~~Ll~~L~~e~t-R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~----l~ 1252 (1827)
+..++..-.+... +..+.+.+....- +.=..+.. .+.+| .+.+-..-++.+....... ..
T Consensus 1269 y~~ila~~n~~~~~ki~~l~n~~~yL~------------eee~~l~~--~~~~w-~~~~k~edlkem~~v~sg~~s~~~~ 1333 (1692)
T KOG1020|consen 1269 YDEILADDNSDIKSKIQLLQNLELYLL------------EEEKKLRN--KGKNW-TKSNKSEDLKEMLDVSSGMGSSDGV 1333 (1692)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHH------------HHHHHHHh--cccch-hhhhhHHHHHhhcccccccccccch
Confidence 5555544444433 6666665544321 11111110 11112 2233344455554432221 11
Q ss_pred hHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhH
Q psy14676 1253 TEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEV 1332 (1827)
Q Consensus 1253 ~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eV 1332 (1827)
...++..++.+....-+.|.++|..++.++.-+... |+......+|.++....|+.++.
T Consensus 1334 ~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~Q---------------------GLVhP~~cvPtLIAL~Tdp~~~~ 1392 (1692)
T KOG1020|consen 1334 SAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQ---------------------GLVHPVHCVPTLIALETDPSQAI 1392 (1692)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc---------------------cCCCccchhhhheeecCChHHHH
Confidence 235666677777777899999999999988766541 11111346788899999999999
Q ss_pred HHHHHHHHhhh
Q psy14676 1333 KSAASYTLGSI 1343 (1827)
Q Consensus 1333 r~aAa~aLG~i 1343 (1827)
|.-|-..|-++
T Consensus 1393 r~~Ad~LL~ei 1403 (1692)
T KOG1020|consen 1393 RHVADELLKEI 1403 (1692)
T ss_pred HHHHHHHHHHH
Confidence 99988877765
No 67
>KOG4535|consensus
Probab=98.03 E-value=0.025 Score=67.94 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHhhhhhh--h
Q psy14676 1098 FYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKA---ADIDQEVKERAISCMGQIICNLGDYLK--S 1172 (1827)
Q Consensus 1098 ~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~---~D~d~eVre~Ai~alg~l~~~~g~~l~--~ 1172 (1827)
.+||++.|.++++.+.+.+.|... +-+..+++.-+.++.. ......||=.|+.++|.+.++-.-.+. +
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~-------~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~ 569 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEK-------PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAP 569 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhh-------ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCC
Confidence 388998777777777766654211 2233344433333331 123567999999999999988654344 3
Q ss_pred hhhhhHHHHHHhhhhh---hhHHHHHHHHHHHhc
Q psy14676 1173 ELPVCLPILLDRLRNE---ITRLTTVKALTKIAA 1203 (1827)
Q Consensus 1173 ~l~~lL~~Ll~~L~~e---~tR~~av~al~~ia~ 1203 (1827)
.-+.++++|...+.+- -.|..|+.++...+.
T Consensus 570 wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 570 WASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred chHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 4566777777666543 348888877766553
No 68
>KOG1059|consensus
Probab=98.01 E-value=0.0054 Score=76.91 Aligned_cols=281 Identities=11% Similarity=0.124 Sum_probs=163.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHH
Q psy14676 837 TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 916 (1827)
Q Consensus 837 Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~ 916 (1827)
|+.||+. +...++-+++-+.+.. +.++..|-+|+.++.++-.++..+|+.+.|.++++ ..-|.|.|+.|..+
T Consensus 129 AL~GLS~---fvTpdLARDLa~Dv~t-LL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 129 ALSGLSC---IVTPDLARDLADDVFT-LLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSA 200 (877)
T ss_pred eeccccc---ccCchhhHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHH
Confidence 4445544 4556666666555444 44566789999999999999999999888876554 55788999999888
Q ss_pred HHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHh---HhhhhhcccchhhHhhhhcccccchhhh
Q psy14676 917 CLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEE---VKSAASYTLGSIAEIISWQSTSTSGVAQ 993 (1827)
Q Consensus 917 al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~---~r~~~~~~lg~~~~~i~Wk~~~~~~~~~ 993 (1827)
|...+.-+...-|+...|+-| ++|..+.+.+.+ +|-.. ....
T Consensus 201 AV~VICELArKnPknyL~LAP----------------~ffkllttSsNNWmLIKiiK-------------------LF~a 245 (877)
T KOG1059|consen 201 AVSVICELARKNPQNYLQLAP----------------LFYKLLVTSSNNWVLIKLLK-------------------LFAA 245 (877)
T ss_pred HHHHHHHHHhhCCcccccccH----------------HHHHHHhccCCCeehHHHHH-------------------HHhh
Confidence 877666666666665555444 334444321111 11000 1122
Q ss_pred hhhhHHHHHHHHHhhhhc--cccchhhHHHHHHhhhccc-----CCCC------chHHHHHHhccCChhhHHHHHHHHHH
Q psy14676 994 LQQFVPAIWAQLFLHCEC--QEEGTRNVVAECLGKLTLI-----DPSN------LLPRLQESLKSNSALMRTTHQSNQTF 1060 (1827)
Q Consensus 994 l~~~~p~ll~~L~~~l~~--~e~~vR~~a~e~Lg~L~~~-----~~~~------llP~L~~~L~s~~~~~R~~a~~~L~~ 1060 (1827)
|.|+-|.+-+-|+.-+.+ +++.-.....||+.++... .++. -+..|...+.+++...|--.+.+++-
T Consensus 246 LtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 246 LTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred ccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 333333332222211111 1222233457888887665 2222 23455555688889999999999985
Q ss_pred HHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHH
Q psy14676 1061 NVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLV 1140 (1827)
Q Consensus 1061 l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~ 1140 (1827)
+....+.. +..--..|+.|+.|.+..||..|+..+-.+|.- .. +..|...++.
T Consensus 326 I~ktHp~~--------------Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk---------kN----l~eIVk~LM~ 378 (877)
T KOG1059|consen 326 ILKTHPKA--------------VQAHKDLILRCLDDKDESIRLRALDLLYGMVSK---------KN----LMEIVKTLMK 378 (877)
T ss_pred HhhhCHHH--------------HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh---------hh----HHHHHHHHHH
Confidence 54443333 444567789999999999999999988887742 22 3333333443
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh
Q psy14676 1141 RLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE 1188 (1827)
Q Consensus 1141 ~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e 1188 (1827)
.+...+. ...|..-+.-+-.+.+...+..-..+..++.++++..+=+
T Consensus 379 ~~~~ae~-t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~ 425 (877)
T KOG1059|consen 379 HVEKAEG-TNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLE 425 (877)
T ss_pred HHHhccc-hhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhcc
Confidence 4432232 2344444443333333333433345666777776665433
No 69
>KOG4535|consensus
Probab=98.00 E-value=0.0011 Score=78.87 Aligned_cols=214 Identities=15% Similarity=0.160 Sum_probs=122.6
Q ss_pred hhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc-hhhHHHHHHHHHHHHHHhccCCCCCCCC
Q psy14676 1048 ALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF-YKITAEALLVLQQFVKVIRPLTSPSSYD 1126 (1827)
Q Consensus 1048 ~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~-~~V~~eAl~~l~~lv~~l~~~~~~~~~~ 1126 (1827)
++.+.+.|..+..+.......|-+- -.+..+.++.++.|.. .-++++|+++.+.++ +.| +...
T Consensus 363 ~Tl~~s~Cdals~i~~~~f~~lpn~----------~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV--LHp----~lr~ 426 (728)
T KOG4535|consen 363 PTLQASACDALSSILPEAFSNLPND----------RQTLCITFLLGCNDSKNRLVKAAASRALGVYV--LHP----CLRQ 426 (728)
T ss_pred CCchhHHHHHHhhcCchhhcCCCCc----------chhhhHHHHhcccchHHHHHHHHHHhhceeEE--ecc----chhh
Confidence 3445555655554444333333332 3467788888887654 446788888877665 333 2223
Q ss_pred cchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh---hhhhhHHHHHHhhh---------hhhhHHHH
Q psy14676 1127 FAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS---ELPVCLPILLDRLR---------NEITRLTT 1194 (1827)
Q Consensus 1127 ~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~---~l~~lL~~Ll~~L~---------~e~tR~~a 1194 (1827)
...++...+..++..+. |....+|+.|..++|.+-..+-+.... .-..+...++.++- +.-.|-.|
T Consensus 427 d~~fv~~aa~~il~sl~--d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLE--DKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred hHHHHHHHHHHHHHHhh--hHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 34678888888888887 777889999999999998777443322 23344444444431 12237889
Q ss_pred HHHHHHHhcCCC---ccccchhhhhhHhhhh-hhhcchhHHHHHHHHHHHHHHHHhCCCCcCh-HhHHHHHHHhhhhcCC
Q psy14676 1195 VKALTKIAASPL---RIDLRPILTDGIPILG-SFLRKNQRALKLSTLLLLDTLLVNYPSAIST-EMLNKVTVELAPLVSE 1269 (1827)
Q Consensus 1195 v~al~~ia~~~~---~~dl~p~~~~~l~~L~-~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~-~~~~~ll~~L~~ll~d 1269 (1827)
++++|.+..... +..+.......+..+. .-.-+..-.+|-++--+++.|.++..-.+.. .|...+++.|..++.+
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 999997654210 1111111111111111 1122444568888889999999875544432 4555666666555543
Q ss_pred -CChhHHHHHH
Q psy14676 1270 -SDLHIAQLTL 1279 (1827)
Q Consensus 1270 -~D~~l~~~al 1279 (1827)
++.-+|-.+.
T Consensus 585 ~~NFKVRi~AA 595 (728)
T KOG4535|consen 585 CKNFKVRIRAA 595 (728)
T ss_pred hccceEeehhh
Confidence 3444444333
No 70
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.98 E-value=3.6e-05 Score=75.56 Aligned_cols=94 Identities=23% Similarity=0.217 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHH
Q psy14676 362 TRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 441 (1827)
Q Consensus 362 vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr 441 (1827)
.|.+++-.+...+.-+|....+|++.|+|.++.++. |..||||
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~-------------------------------------D~d~rVR 44 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFD-------------------------------------DQDSRVR 44 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcC-------------------------------------CCcHHHH
Confidence 377888888888888888899999999999999983 4579999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 442 RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 442 ~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
-.|++++.++++..+..+.+||..+.+.|...+.|.+++||.+| +.+-.++
T Consensus 45 y~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 45 YYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 99999999999999988888999999999999999999999998 4555554
No 71
>KOG1820|consensus
Probab=97.94 E-value=0.00065 Score=89.70 Aligned_cols=200 Identities=20% Similarity=0.300 Sum_probs=139.5
Q ss_pred hhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCC
Q psy14676 342 TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL-APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDG 420 (1827)
Q Consensus 342 ~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~ 420 (1827)
..++.+.+.+...+.+++++-|..++.-+......-+... ..+..-+...+.-.+
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~------------------------ 304 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRL------------------------ 304 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhc------------------------
Confidence 4678888899999999999999877766555554444222 344444444444443
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCC
Q psy14676 421 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS 500 (1827)
Q Consensus 421 ~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~ 500 (1827)
-|.+..+..-|+.+|..+++.++..|.+|.....|.++.++++.+..+|+.+...+...+...+
T Consensus 305 -------------kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--- 368 (815)
T KOG1820|consen 305 -------------KDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--- 368 (815)
T ss_pred -------------cCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---
Confidence 2456778888999999999999988999999999999999999999999999999888887433
Q ss_pred CCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhcccc
Q psy14676 501 PLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKL 580 (1827)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~ 580 (1827)
+ ..++..+.+.++..+.+.++.|...+..++...+| ...
T Consensus 369 -l----------------------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~------------------~~~ 407 (815)
T KOG1820|consen 369 -L----------------------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP------------------KTV 407 (815)
T ss_pred -H----------------------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC------------------cCc
Confidence 1 12233333334444333344433333222111111 001
Q ss_pred chhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhh
Q psy14676 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIA 622 (1827)
Q Consensus 581 d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~ 622 (1827)
-..+...+++.+..+.+|.+.+||..|..+++.+.+.+|+.+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 113567789999999999999999999999999999999843
No 72
>KOG2259|consensus
Probab=97.90 E-value=0.00082 Score=83.15 Aligned_cols=280 Identities=15% Similarity=0.135 Sum_probs=154.3
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---hhh--
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG---HRF-- 153 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~---~~~-- 153 (1827)
.....+.....+.+..||++|+.++-.+.+.. ++-........+.++ +....+|..+++.+.-.+.-.| ++.
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 45555666677888999999999999988843 222223344444444 4567899999999998887663 122
Q ss_pred -HHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH-HHHHHHHH--HhccCCCCCcccccccCCCCCC
Q psy14676 154 -AEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ-SITELCLT--YITYDPNYNYEDEEEGLGGEGG 229 (1827)
Q Consensus 154 -~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~-~ii~~ll~--~l~~dpn~~~~ddd~~~~~~~~ 229 (1827)
..+.+..+--+-..+.|-.=.+|-.|..+|+.|-..-.+-+..-++ +++.-+-+ ....-|-- .....+|..+..-
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~-l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKA-LYSSGEWSSGKEW 353 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHH-HHhcCCcccCccc
Confidence 2234444444444455555556655555554443221111111111 01110000 00000100 0001122111000
Q ss_pred CCCCCCcccCCCCCCCC--C----CCC-CCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHH
Q psy14676 230 GEGMDTEEEDGEDEGED--D----NEY-SDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVK 302 (1827)
Q Consensus 230 ~~~~d~~~~d~dde~e~--~----~e~-sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR 302 (1827)
+++...++ + |++.+. . .-| ..-+|.-+.||+||...+..++.++|. |-...+.+|+..|+|.-+.||
T Consensus 354 ~advpsee-~-d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 354 NADVPSEE-D-DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccCchhh-c-cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHH
Confidence 00000000 0 000000 0 000 122566688999999999999999886 345678889999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccccc
Q psy14676 303 SDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLA 382 (1827)
Q Consensus 303 ~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~ 382 (1827)
..++.++..+..... .=+.| ++.++..|.|.++++|++.-.+|+...-.--
T Consensus 428 L~ai~aL~~Is~~l~---------------------i~eeq----l~~il~~L~D~s~dvRe~l~elL~~~~~~d~---- 478 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA---------------------IREEQ----LRQILESLEDRSVDVREALRELLKNARVSDL---- 478 (823)
T ss_pred HHHHHHHHHHHHHhe---------------------ecHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH----
Confidence 999999988874311 01234 5556777889999999999887764432211
Q ss_pred CchhhHHHHHHHHhh
Q psy14676 383 PSLPALIPDVTSVAE 397 (1827)
Q Consensus 383 ~~l~~Llp~i~~~L~ 397 (1827)
+.+.-.+..+.+.|.
T Consensus 479 ~~i~m~v~~lL~~L~ 493 (823)
T KOG2259|consen 479 ECIDMCVAHLLKNLG 493 (823)
T ss_pred HHHHHHHHHHHHHhh
Confidence 233445555666663
No 73
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.89 E-value=0.00012 Score=71.90 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 260 VRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 260 VRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
.|+++.-+|.+++.+.+....++++.++|.++..|.|.+|.||..|++++..+++..+ ..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--------------------~~ 61 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--------------------GE 61 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--------------------HH
Confidence 4899999999999999988999999999999999999999999999999999986532 34
Q ss_pred HHhhhHHHHHHHHHHhccCCHhHHHHHHHH
Q psy14676 340 LSTQVPSLVKALQCQLREKSIRTRQDCLAL 369 (1827)
Q Consensus 340 l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~l 369 (1827)
+-++++.|...+.+.+.|.++.||.+|..+
T Consensus 62 ~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 62 ILPYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 566899999999999999999999988643
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.14 Score=62.92 Aligned_cols=280 Identities=19% Similarity=0.299 Sum_probs=164.4
Q ss_pred hhhhHHHHHHhhhh--hhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCc
Q psy14676 1174 LPVCLPILLDRLRN--EITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 1251 (1827)
Q Consensus 1174 l~~lL~~Ll~~L~~--e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l 1251 (1827)
+..+-|.|-.-+++ |..-++++|++..++..... +.++...+..|..+|....-.+|-++++.|..+...++..+
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~---~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG---SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 44556666666766 77789999998887754321 34667788889999988888899999999999999887764
Q ss_pred ChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHh
Q psy14676 1252 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEE 1331 (1827)
Q Consensus 1252 ~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~e 1331 (1827)
.. -=+++-.+++|.++.+..-|+..| .+. |.. .++..++..+.....|-|++
T Consensus 339 ~v-----cN~evEsLIsd~Nr~IstyAITtL---LKT-----------------Gt~---e~idrLv~~I~sfvhD~SD~ 390 (898)
T COG5240 339 SV-----CNKEVESLISDENRTISTYAITTL---LKT-----------------GTE---ETIDRLVNLIPSFVHDMSDG 390 (898)
T ss_pred ee-----cChhHHHHhhcccccchHHHHHHH---HHc-----------------Cch---hhHHHHHHHHHHHHHhhccC
Confidence 32 113456788899888777665433 321 110 12344555555555565666
Q ss_pred HHHHHHHHHhhhhhhhh---hhhHHHHHHhhhcCc--hhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhc
Q psy14676 1332 VKSAASYTLGSIAVGNL---QQYVPFVLKEIENQP--KRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1406 (1827)
Q Consensus 1332 Vr~aAa~aLG~i~~~~l---~~~LP~Il~~i~~~~--~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~ 1406 (1827)
.|.-+..|+-.++.... ..||.++-+.+.+.+ +-+-.+..+|..++... .+.++..-..+=.+++-|+
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~-------p~skEraLe~LC~fIEDce 463 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND-------PDSKERALEVLCTFIEDCE 463 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC-------chHHHHHHHHHHHHHhhcc
Confidence 66666666555543221 234444444443322 12222334444444321 0111111111112223222
Q ss_pred CCchhHHHHHHHHHHHhhccC-----CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhh
Q psy14676 1407 CQEEGTRNVVAECLGKLTLID-----PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSEL 1481 (1827)
Q Consensus 1407 ~~~e~vR~~aAecLGkL~~~~-----p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l 1481 (1827)
-. ..+-.-||-|..-. |..|+-++-+.+-=++..+|.++++|+..+.-... |+.
T Consensus 464 y~-----~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~------------- 522 (898)
T COG5240 464 YH-----QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVV------------- 522 (898)
T ss_pred hh-----HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccc-------------
Confidence 21 22223355555433 55788888888777888999999999865542221 111
Q ss_pred hhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhh
Q psy14676 1482 QKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1482 ~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L 1522 (1827)
..+.+...+-++++|.|..||..|.-++..+
T Consensus 523 ----------~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 523 ----------SPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred ----------cHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 1245667778899999999999888777544
No 75
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.84 E-value=0.0016 Score=80.96 Aligned_cols=237 Identities=14% Similarity=0.016 Sum_probs=148.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhh--hhhHHHHHHHHHHHhcCCCccccchh
Q psy14676 1136 QCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRN--EITRLTTVKALTKIAASPLRIDLRPI 1213 (1827)
Q Consensus 1136 ~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~--e~tR~~av~al~~ia~~~~~~dl~p~ 1213 (1827)
+.++..+. .|.+.+|+..|..++... + -+..+..+++.+.+ +..|..++++||.+..
T Consensus 57 ~~L~~aL~-~d~~~ev~~~aa~al~~~-----~-----~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---------- 115 (410)
T TIGR02270 57 ELLVSALA-EADEPGRVACAALALLAQ-----E-----DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG---------- 115 (410)
T ss_pred HHHHHHHh-hCCChhHHHHHHHHHhcc-----C-----ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----------
Confidence 33444553 366788877766665431 1 12236667777754 4469999999997653
Q ss_pred hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCcc
Q psy14676 1214 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL 1293 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~ 1293 (1827)
....+.|...+.+.+..+|.+++.+++..- .+ -.+.+.++++|.|..++..++.+|+.+-.
T Consensus 116 -~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~----~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 116 -RQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HD----PGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred -hHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cC----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 445677788888888899999998887511 11 12345667789999999998888765432
Q ss_pred chhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHH
Q psy14676 1294 VEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSL 1373 (1827)
Q Consensus 1294 ~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL 1373 (1827)
....+.+...+.+.+++||.+|+.+++.+|... -++.+.......+..+..-+
T Consensus 177 ---------------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~---A~~~l~~~~~~~g~~~~~~l--- 229 (410)
T TIGR02270 177 ---------------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRL---AWGVCRRFQVLEGGPHRQRL--- 229 (410)
T ss_pred ---------------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHh---HHHHHHHHHhccCccHHHHH---
Confidence 234455667899999999999999999987632 22333332222111222211
Q ss_pred HHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHH
Q psy14676 1374 KEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTA 1453 (1827)
Q Consensus 1374 ~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~A 1453 (1827)
..++... |. +.++..|...+.+ +.+|..++.++|++.. ...+|.|.+.+.++. .|..+-.|
T Consensus 230 ~~~lal~-----~~-------~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~---p~av~~L~~~l~d~~--~aR~A~eA 290 (410)
T TIGR02270 230 LVLLAVA-----GG-------PDAQAWLRELLQA--AATRREALRAVGLVGD---VEAAPWCLEAMREPP--WARLAGEA 290 (410)
T ss_pred HHHHHhC-----Cc-------hhHHHHHHHHhcC--hhhHHHHHHHHHHcCC---cchHHHHHHHhcCcH--HHHHHHHH
Confidence 1122110 11 2334444443322 3489999999998764 346688888886543 77777888
Q ss_pred HHHHh
Q psy14676 1454 VKFTI 1458 (1827)
Q Consensus 1454 lk~~~ 1458 (1827)
++.+.
T Consensus 291 ~~~It 295 (410)
T TIGR02270 291 FSLIT 295 (410)
T ss_pred HHHhh
Confidence 87765
No 76
>KOG1992|consensus
Probab=97.80 E-value=0.28 Score=63.23 Aligned_cols=268 Identities=16% Similarity=0.188 Sum_probs=136.8
Q ss_pred hhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCC--CCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14676 1083 YYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLT--SPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1083 l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~--~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg 1160 (1827)
+-.++|.++..+..+.+-|-+=|..+++.+..+=.+.. -.+++++.||+..++..++..++- +. ..--+.-..|+-
T Consensus 496 lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~-p~-~~EneylmKaIm 573 (960)
T KOG1992|consen 496 LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL-PG-KAENEYLMKAIM 573 (960)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC-Cc-ccccHHHHHHHH
Confidence 44555555555555555555555555555554322100 113567888999888888877652 22 244566677777
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHH
Q psy14676 1161 QIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLL 1240 (1827)
Q Consensus 1161 ~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL 1240 (1827)
.++....+...|+.+.+++.|.+.+ ..++..+.+..+..|+=+.+-.+....++++.
T Consensus 574 Rii~i~~~~i~p~~~~~l~~Lteiv-------------~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~---------- 630 (960)
T KOG1992|consen 574 RIISILQSAIIPHAPELLRQLTEIV-------------EEVSKNPSNPQFNHYLFESIGLLIRKTCKANP---------- 630 (960)
T ss_pred HHHHhCHHhhhhhhhHHHHHHHHHH-------------HHHhcCCCCchhHHHHHHHHHHHHHHHhccCc----------
Confidence 7777666666677777777665442 23343333322232332222222222222221
Q ss_pred HHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhh--HH-----hhhhhcccccCCCc
Q psy14676 1241 DTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA--AA-----SILPQIGRHTDLTS 1313 (1827)
Q Consensus 1241 ~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~--i~-----~~lgeiG~~~~~~~ 1313 (1827)
+ .-+.+...++|.+...+++.=.+..+.++.+++-+.+.+......+. +. ..+|+-.. .
T Consensus 631 --------~-~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~g-----N 696 (960)
T KOG1992|consen 631 --------S-AVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSG-----N 696 (960)
T ss_pred --------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcC-----C
Confidence 0 01123445666666666655556667778888888776654222111 00 01111110 1
Q ss_pred hhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc--CchhhHHHHHHHHHHHhhccccccchhhhh
Q psy14676 1314 VADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN--QPKRQYLLLHSLKEIISWQSTSTSGVAQLQ 1391 (1827)
Q Consensus 1314 ~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~--~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~ 1391 (1827)
+|.+..++...++-++..+- +.++++..|..+-+.+.+ ....-+.+|..+-+.+. ...+.
T Consensus 697 ipalvrLl~aflk~g~~~~~----------~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~--------~~~~~ 758 (960)
T KOG1992|consen 697 IPALVRLLQAFLKTGSQIVE----------AADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIP--------PNELA 758 (960)
T ss_pred cHHHHHHHHHHHhcCchhhc----------ccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCC--------Hhhhh
Confidence 23344444444443332222 112233344333333332 11233556777777665 45678
Q ss_pred chHHHHHHHHhhhhcC
Q psy14676 1392 QFVPAIWAQLFLHCEC 1407 (1827)
Q Consensus 1392 ~~~~~i~~~L~~~~~~ 1407 (1827)
||+.+||..+++.+.+
T Consensus 759 py~k~i~~llf~Rlqn 774 (960)
T KOG1992|consen 759 PYMKQIFGLLFQRLQN 774 (960)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998753
No 77
>KOG2032|consensus
Probab=97.77 E-value=0.0071 Score=73.42 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=140.3
Q ss_pred cCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCC
Q psy14676 1045 SNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSS 1124 (1827)
Q Consensus 1045 s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~ 1124 (1827)
+.+...|++++++-.++..+.+..+ +.++..+........+.-|... +.-+++..+|..-
T Consensus 191 s~~~~h~~g~trlqr~m~~~~~~~~--------------~~il~q~~ss~ts~~~~~ritd---~Af~ael~~~~~l--- 250 (533)
T KOG2032|consen 191 SDNDIHRVGLTRLQRFMACVQDLEM--------------GKILAQLLSSITSEKENGRITD---IAFFAELKRPKEL--- 250 (533)
T ss_pred ccCcccHHHHHHHHHHHHhhCCccH--------------HHHHhhcccccchhcccchHHH---HHHHHHHhCcccc---
Confidence 3455678888888888888776543 3333333333332222222222 2234444444211
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhh---hhhhHHHHHHHHHHH
Q psy14676 1125 YDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLR---NEITRLTTVKALTKI 1201 (1827)
Q Consensus 1125 ~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~---~e~tR~~av~al~~i 1201 (1827)
+-.+.+..+|..+..+.. |.+..+|.-|+.++|..+.-.++....+.+.++..++..|- |++.-+++++++..+
T Consensus 251 -~~~~lL~s~~~~la~ka~--dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 251 -DKTGLLGSVLLSLANKAT--DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred -cccccHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 112567777777777766 88889999999999999998888888888888888888874 456689999999999
Q ss_pred hcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc
Q psy14676 1202 AASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV 1267 (1827)
Q Consensus 1202 a~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll 1267 (1827)
.......|+++|.-++.-.+..+..+.+...|.+++..++.|.+-.+..-.....+.+...+.+++
T Consensus 328 ~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll 393 (533)
T KOG2032|consen 328 LEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL 393 (533)
T ss_pred HHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce
Confidence 987777888999888777888888888899999999999999997766544334445555555554
No 78
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.76 E-value=0.0035 Score=77.31 Aligned_cols=255 Identities=20% Similarity=0.209 Sum_probs=158.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccch
Q psy14676 1135 YQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRP 1212 (1827)
Q Consensus 1135 ~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p 1212 (1827)
.+.++..+. +.+..+|..|...++.+- ....+|.+.+.+.++.. |..|+.++|.+..
T Consensus 45 ~~~~~~~l~--~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 45 ADELLKLLE--DEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 344455555 558899999999866643 35577778888876554 9999999887653
Q ss_pred hhhhhHhhhhhhhc-chhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHH-HHHHHhCC
Q psy14676 1213 ILTDGIPILGSFLR-KNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLL-TSIAKIQP 1290 (1827)
Q Consensus 1213 ~~~~~l~~L~~~Lr-k~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L-~~l~~~~~ 1290 (1827)
+..++.+..++. +.+..+|..+..+|+.+-.. . .+..+...+.+.+... . ...+ ..+.
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-------~----a~~~l~~~l~~~~~~~-a--~~~~~~~~~---- 163 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKLGDE-------R----ALDPLLEALQDEDSGS-A--AAALDAALL---- 163 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-------h----hhHHHHHHhccchhhh-h--hhhccchHH----
Confidence 455777777777 57899999999999875331 1 1334445555544222 0 0000 0000
Q ss_pred CccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHH
Q psy14676 1291 NALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLL 1369 (1827)
Q Consensus 1291 ~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~ 1369 (1827)
.+...++..++.+|- +...+.+...+.+....||.+|+.+||.++..+ ....+.+.+.+.+ ....++..
T Consensus 164 --~~r~~a~~~l~~~~~-------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 164 --DVRAAAAEALGELGD-------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred --HHHHHHHHHHHHcCC-------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-hhHHHHHHHHhcCCCHHHHHHH
Confidence 000112233334432 457788889999999999999999999998876 3344555555544 33455555
Q ss_pred HHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHH
Q psy14676 1370 LHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTT 1449 (1827)
Q Consensus 1370 l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t 1449 (1827)
+.+|+++-. ...... +...+.+.+..++...+.+++ ........+.+...+.+.+...|..
T Consensus 234 ~~~l~~~~~------------~~~~~~----l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (335)
T COG1413 234 LLALGEIGD------------EEAVDA----LAKALEDEDVILALLAAAALG---ALDLAEAALPLLLLLIDEANAVRLE 294 (335)
T ss_pred HHHhcccCc------------chhHHH----HHHHHhccchHHHHHHHHHhc---ccCchhhHHHHHHHhhcchhhHHHH
Confidence 555555421 112222 333333445556777777777 3334445566777777888888888
Q ss_pred HHHHHHHHhh
Q psy14676 1450 VLTAVKFTIS 1459 (1827)
Q Consensus 1450 ~l~Alk~~~~ 1459 (1827)
...++.....
T Consensus 295 ~~~~l~~~~~ 304 (335)
T COG1413 295 AALALGQIGQ 304 (335)
T ss_pred HHHHHHhhcc
Confidence 8888887764
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.70 E-value=0.0012 Score=82.04 Aligned_cols=186 Identities=17% Similarity=0.085 Sum_probs=131.8
Q ss_pred HHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1002 WAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1002 l~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+..+...+.+.+++||..+++.||.+. .+...+.|...+++.++.+|..++.+++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~---~~~a~~~L~~~L~~~~p~vR~aal~al~~r---~~--------------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG---GRQAEPWLEPLLAASEPPGRAIGLAALGAH---RH--------------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC---chHHHHHHHHHhcCCChHHHHHHHHHHHhh---cc---------------
Confidence 566777778888999999999998754 366788999999999999998888777651 11
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQ 1161 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~ 1161 (1827)
.-.+.+...++|.+|.|+.+|++++|.+-.. +. +.. +...+ .|.+.+||..|+.+++.
T Consensus 147 ---~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a---~~~----L~~al--~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 147 ---DPGPALEAALTHEDALVRAAALRALGELPRR----------LS---EST----LRLYL--RDSDPEVRFAALEAGLL 204 (410)
T ss_pred ---ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cc---hHH----HHHHH--cCCCHHHHHHHHHHHHH
Confidence 1235677778899999999999999986521 11 222 22223 38899999999999877
Q ss_pred HHHH---------h---hh--------hhh-hhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhh
Q psy14676 1162 IICN---------L---GD--------YLK-SELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPI 1220 (1827)
Q Consensus 1162 l~~~---------~---g~--------~l~-~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~ 1220 (1827)
+-.. . |. .+. ..-+..++.|...++++.+|..++.++|.+.. +..++.
T Consensus 205 lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~vr~~a~~AlG~lg~-----------p~av~~ 273 (410)
T TIGR02270 205 AGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAATRREALRAVGLVGD-----------VEAAPW 273 (410)
T ss_pred cCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChhhHHHHHHHHHHcCC-----------cchHHH
Confidence 6211 0 10 000 01235667777777888899999999998864 345777
Q ss_pred hhhhhcchhHHHHHHHHHHHHHH
Q psy14676 1221 LGSFLRKNQRALKLSTLLLLDTL 1243 (1827)
Q Consensus 1221 L~~~Lrk~~r~lR~~al~aL~~L 1243 (1827)
|...+++.. +|..+-+++..+
T Consensus 274 L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 274 CLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HHHHhcCcH--HHHHHHHHHHHh
Confidence 777775443 778888888765
No 80
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.63 E-value=0.004 Score=76.80 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=162.7
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
..+.+.+.+.+.++..|..+...++.+. ....+|.+...+.|..+.||..|..+++.+-
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------------------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~- 102 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG--------------------SEEAVPLLRELLSDEDPRVRDAAADALGELG- 102 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc--------------------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-
Confidence 4667777778878888888887766432 3367889999999999999999988666543
Q ss_pred HhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh------
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE------ 1188 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e------ 1188 (1827)
.+..++.++..+. +|.+..||..|..++|.+-... .+..+++.+.++
T Consensus 103 ----------------~~~a~~~li~~l~-~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~ 155 (335)
T COG1413 103 ----------------DPEAVPPLVELLE-NDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAA 155 (335)
T ss_pred ----------------ChhHHHHHHHHHH-cCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhh
Confidence 1223344444554 3788899999999999864322 133333334332
Q ss_pred --------hhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHH
Q psy14676 1189 --------ITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVT 1260 (1827)
Q Consensus 1189 --------~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll 1260 (1827)
..|..++.+++.+.. +...+.+..++++..+.+|..+..+|+.+.... ..+.
T Consensus 156 ~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~ 215 (335)
T COG1413 156 AALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAA 215 (335)
T ss_pred hhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHH
Confidence 258888888887763 344667777888888899999999998765431 2345
Q ss_pred HHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHH
Q psy14676 1261 VELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTL 1340 (1827)
Q Consensus 1261 ~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aL 1340 (1827)
..+...+++.+..++..++..|+. +| ...-.+.+...+.+.+..++..++.++
T Consensus 216 ~~l~~~~~~~~~~vr~~~~~~l~~--------------------~~-------~~~~~~~l~~~l~~~~~~~~~~~~~~~ 268 (335)
T COG1413 216 DLLVKALSDESLEVRKAALLALGE--------------------IG-------DEEAVDALAKALEDEDVILALLAAAAL 268 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHhcc--------------------cC-------cchhHHHHHHHHhccchHHHHHHHHHh
Confidence 566778888888888876655432 22 244667788888888888888888887
Q ss_pred hhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHH
Q psy14676 1341 GSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEII 1377 (1827)
Q Consensus 1341 G~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii 1377 (1827)
+... ......+.+..........++....+++.+.
T Consensus 269 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 269 GALD--LAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred cccC--chhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 7322 2222333333333333344555555555553
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.61 E-value=4.3e-05 Score=67.05 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~l 312 (1827)
|+||++|+.+|+.++...++.+.++.+.++|.|...++|.++.||..|+.+++.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999888888889999999999999999999999999999999754
No 82
>KOG1061|consensus
Probab=97.57 E-value=0.042 Score=70.58 Aligned_cols=365 Identities=14% Similarity=0.179 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcC---CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhccc
Q psy14676 833 NLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTT---NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE 909 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~ 909 (1827)
+|..|+...+.+ -+.++..++.+.+.+ +..+.+|+++.-+..-+-.--++.+ +-..+++.+-..+.|+
T Consensus 102 iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~--~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 102 IRALALRTMGCL-------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV--EDSGLVDALKDLLSDS 172 (734)
T ss_pred HHHHHhhceeeE-------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc--cccchhHHHHHHhcCC
Confidence 777777666554 234455555555433 6788999998888777755444322 2345677777777788
Q ss_pred chHHHHHHHHHHHHHHhhCCCcccccc-ccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhccccc
Q psy14676 910 DDELREFCLQACEAFVQRCPKEITPHI-QSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTST 988 (1827)
Q Consensus 910 ~~~vre~al~Ale~~v~~~~~~i~p~l-~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~ 988 (1827)
++.|...|+.|+..+.+.-+..-.+.+ .++++ -++.+ ..++-.|..
T Consensus 173 ~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~------------~lL~a------------------l~ec~EW~q--- 219 (734)
T KOG1061|consen 173 NPMVVANALAALSEIHESHPSVNLLELNPQLIN------------KLLEA------------------LNECTEWGQ--- 219 (734)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcccccHHHHH------------HHHHH------------------HHHhhhhhH---
Confidence 999998999998776654443111111 10000 00000 001112221
Q ss_pred chhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCC------CchHHHHHHhccCChhhHHHHHHHHHHHH
Q psy14676 989 SGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS------NLLPRLQESLKSNSALMRTTHQSNQTFNV 1062 (1827)
Q Consensus 989 ~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~------~llP~L~~~L~s~~~~~R~~a~~~L~~l~ 1062 (1827)
+.+|+.++...|. .++..+...+.+.++.+-.++..++-.+.
T Consensus 220 --------------------------------i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 220 --------------------------------IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred --------------------------------HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 2333333333332 23333444445555555555555555332
Q ss_pred HhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCC-CCCCcchhHHHHHHHHHHH
Q psy14676 1063 IIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSP-SSYDFAPFTSDIYQCTLVR 1141 (1827)
Q Consensus 1063 ~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~-~~~~~~~~l~~l~~~ll~~ 1141 (1827)
.-....-.. ++..+-|+++..+.-+. .+.--|++-+..++........+ -..-|-.|.+++|
T Consensus 268 ~~~~~~~~~----------~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiY------ 330 (734)
T KOG1061|consen 268 KYLKQVNEL----------LFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIY------ 330 (734)
T ss_pred HHHHHHHHH----------HHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchh------
Confidence 222211111 24556666655554333 55556666666665431100000 0011222333333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhhhHh
Q psy14676 1142 LKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTDGIP 1219 (1827)
Q Consensus 1142 L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~ 1219 (1827)
|+..=+.++-.++. ...+++++.-+.+.-.+-+. -..+|||+|.++... +.+ +.++.
T Consensus 331 ---------vK~eKleil~~la~------~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~-----e~~-~~cv~ 389 (734)
T KOG1061|consen 331 ---------VKLEKLEILIELAN------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA-----EQS-NDCVS 389 (734)
T ss_pred ---------hHHHHHHHHHHHhh------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----hhh-hhhHH
Confidence 33334444444432 12334444444444333222 467999999988542 334 77888
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCC-CChhHHHHHHHHHHHHHHhCCCccchhhH
Q psy14676 1220 ILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSE-SDLHIAQLTLTLLTSIAKIQPNALVEPAA 1298 (1827)
Q Consensus 1220 ~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d-~D~~l~~~al~~L~~l~~~~~~~~~~~~i 1298 (1827)
.|..+++-....+.+.+...+..++..|+... +.+++.+..-+.. +++..+...+-++
T Consensus 390 ~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-----~~vv~~l~~~~~sl~epeak~amiWil---------------- 448 (734)
T KOG1061|consen 390 ILLELLETKVDYVVQEAIVVIRDILRKYPNKY-----ESVVAILCENLDSLQEPEAKAALIWIL---------------- 448 (734)
T ss_pred HHHHHHhhcccceeeehhHHHHhhhhcCCCch-----hhhhhhhcccccccCChHHHHHHHHHH----------------
Confidence 88888873333455566667777777766532 3344444332222 2333333322222
Q ss_pred HhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHH
Q psy14676 1299 ASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAA 1336 (1827)
Q Consensus 1299 ~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aA 1336 (1827)
|+-+.++ +..+.++..|++.|.++..+|+..-
T Consensus 449 ----g~y~~~i--~~a~elL~~f~en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 449 ----GEYAERI--ENALELLESFLENFKDETAEVQLEL 480 (734)
T ss_pred ----hhhhhcc--CcHHHHHHHHHhhcccchHHHHHHH
Confidence 2322233 2336799999999999988887644
No 83
>KOG2032|consensus
Probab=97.54 E-value=0.062 Score=65.60 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChH
Q psy14676 259 KVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPL 337 (1827)
Q Consensus 259 kVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1827)
++|+.|+.+|+..++..|+....+++.++..++..+ ++-+++|-.+++.++..++.... .
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~---~---------------- 333 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS---N---------------- 333 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh---h----------------
Confidence 899999999999999989888899999999999877 45568999999999987774321 1
Q ss_pred hhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc
Q psy14676 338 CLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL 381 (1827)
Q Consensus 338 ~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l 381 (1827)
..+.+++-.|.-.+...++++++++|.+++.+++.|+...++.-
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~ 377 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW 377 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc
Confidence 12445555566666777889999999999999999999887743
No 84
>KOG2021|consensus
Probab=97.54 E-value=0.59 Score=59.76 Aligned_cols=298 Identities=14% Similarity=0.165 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCch-hH----HHHHHH-hhhcCCC----CHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSF-HF----VILTAL-LPQLSSP----RQAVRKRTIVALSHLVMSCNLQLYTKLI 119 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~-~~----~il~~l-l~~L~~~----~~~VRk~Ai~aL~~l~~~~~~~~~~~l~ 119 (1827)
.++.+|--++..|.+.++..-...... .. .+..-+ .+.+.+. -+-++.++...+..+....-+..|+.++
T Consensus 51 s~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF 130 (980)
T KOG2021|consen 51 SNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFF 130 (980)
T ss_pred ccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 467888899999999888775544332 12 222222 2334444 3578999988888888877777788888
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhc------------------hhh-HHhHHHHHHHHHhhcc---c-CchHHH
Q psy14676 120 DFLLEGLTTNKSTSTNRTYIQCFAAICRQAG------------------HRF-AEHIERVMPLILKYSR---E-EDDELR 176 (1827)
Q Consensus 120 ~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~------------------~~~-~p~l~~i~p~l~~~~~---~-~~delR 176 (1827)
..++..+..+...+--.-.+..+-++-.... +.+ .+-+++++....++++ . -++++-
T Consensus 131 ~dlmsv~~~~s~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~ 210 (980)
T KOG2021|consen 131 DDLMSVFQVDSAISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLI 210 (980)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHH
Confidence 8888777543221112222222222221110 111 1123444444444432 1 267777
Q ss_pred HHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccc
Q psy14676 177 EFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDM 256 (1827)
Q Consensus 177 e~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~ 256 (1827)
-.|+++.++|+.-..-.+-. =+.-++++.+.|..
T Consensus 211 ~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~i--------------------------------------------- 244 (980)
T KOG2021|consen 211 NSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLNI--------------------------------------------- 244 (980)
T ss_pred HHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHhH---------------------------------------------
Confidence 78888888877743211000 01234555555422
Q ss_pred hhhHHHHHHHHHHHHHHHcCCchh--hhHHhhhHHHH-hhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q psy14676 257 SWKVRRAAAKCLEAIIATRRDLIG--DMYRLVSPPLI-ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQE 333 (1827)
Q Consensus 257 sWkVRraAak~L~~l~~~~~~~l~--~~~~~v~p~L~-~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~ 333 (1827)
-.+|-+|+.|+-++++..-+-.. ++++.+...+. ..++..+..+-.+-+..++.++...|..--...+..+ +..
T Consensus 245 -eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~ln--sel 321 (980)
T KOG2021|consen 245 -EELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLN--SEL 321 (980)
T ss_pred -HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhh--hcc
Confidence 03899999999999976543221 13333322221 1223333333445566667776554421100001111 111
Q ss_pred CC-hHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc--cc----cCchhhHHHHHHHHh
Q psy14676 334 DS-PLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG--CL----APSLPALIPDVTSVA 396 (1827)
Q Consensus 334 ~~-~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~--~l----~~~l~~Llp~i~~~L 396 (1827)
+. ..+....++-.++|.+++.|.++.....-+.+.++......+.+ ++ ..++..++..+.+-+
T Consensus 322 d~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqi 391 (980)
T KOG2021|consen 322 DTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQI 391 (980)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHH
Confidence 11 12234445555899999999988888888888887766655543 23 246667766665554
No 85
>KOG2956|consensus
Probab=97.52 E-value=0.0069 Score=73.08 Aligned_cols=218 Identities=14% Similarity=0.216 Sum_probs=150.7
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHH-HHHHHHHHhchhhHHhHHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHhCCCc
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQ-CFAAICRQAGHRFAEHIERVMPLILKYSRE-EDDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~-~l~~la~~~~~~~~p~l~~i~p~l~~~~~~-~~delRe~al~ale~~~~~~p~e 193 (1827)
.+++.+++..+..+...+.++.+++ ....+++..-.-...|+.+|+-.+++.+.+ .++-.|+.|+..+.-+++.-|..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 3577788888876655566777776 555555555566678899999999999988 66777889999898888887877
Q ss_pred cccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q psy14676 194 ITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 273 (1827)
Q Consensus 194 ~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~ 273 (1827)
+..+..-.|.-.++.-+. + .| -.+|-|+-.|+-.+++
T Consensus 365 l~DstE~ai~K~Leaa~d-s--------------------------------------~~----~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKD-S--------------------------------------QD----EVMRVAEEDCLTTLAS 401 (516)
T ss_pred hhchHHHHHHHHHHHHhC-C--------------------------------------ch----hHHHHHHHHHHHHHHh
Confidence 666665555555543211 0 00 0345555556666666
Q ss_pred HcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 274 TRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 274 ~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
+.|. .-...+.|.++. .++..-.+++..+..+++.. ..+.|-.++|.|.|.+++
T Consensus 402 ~~P~---~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l-------------------~~EeL~~ll~diaP~~iq 455 (516)
T KOG2956|consen 402 HLPL---QCIVNISPLILT----ADEPRAVAVIKMLTKLFERL-------------------SAEELLNLLPDIAPCVIQ 455 (516)
T ss_pred hCch---hHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhc-------------------CHHHHHHhhhhhhhHHHH
Confidence 6553 224455666654 33444455666777777432 235688899999999999
Q ss_pred HhccCCHhHHHHHHHHHHHHHHhCc-ccccCchhhHHHHHHHHhhhhhcc
Q psy14676 354 QLREKSIRTRQDCLALLRELVQTLP-GCLAPSLPALIPDVTSVAEWDEEE 402 (1827)
Q Consensus 354 ~L~d~~~~vR~a~~~ll~~L~~vl~-~~l~~~l~~Llp~i~~~L~~~~~~ 402 (1827)
.....+..||.+|.-.|-.+..++| ..+.+|+.+|-.+-..+++=.-++
T Consensus 456 ay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinR 505 (516)
T KOG2956|consen 456 AYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINR 505 (516)
T ss_pred HhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHH
Confidence 9999999999988888888888888 799999999888766666433333
No 86
>KOG2259|consensus
Probab=97.49 E-value=0.019 Score=71.53 Aligned_cols=286 Identities=15% Similarity=0.136 Sum_probs=178.7
Q ss_pred ccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhc-cCCCC
Q psy14676 1044 KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIR-PLTSP 1122 (1827)
Q Consensus 1044 ~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~-~~~~~ 1122 (1827)
.+.++.+|..|+..|-.+.. +++- -..+.....+.+.|++..||.+|.+.+..+.+..- |..
T Consensus 208 ~~~D~~Vrt~A~eglL~L~e----g~kL-----------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e-- 270 (823)
T KOG2259|consen 208 HDQDFRVRTHAVEGLLALSE----GFKL-----------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE-- 270 (823)
T ss_pred cCCCcchHHHHHHHHHhhcc----cccc-----------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc--
Confidence 44556667666666554443 2221 12345556778899999999999998888876541 111
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHh
Q psy14676 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIA 1202 (1827)
Q Consensus 1123 ~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia 1202 (1827)
....-....+..|..+...+. |....||-.|..++|.+-....+.+. +++=..++.+++..-|....-+.+-.=+
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~vSee~i~---QTLdKKlms~lRRkr~ahkrpk~l~s~G 345 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQVSEEIIQ---QTLDKKLMSRLRRKRTAHKRPKALYSSG 345 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHh--cCceeeeehHHHHhchHHHhHHHHHH---HHHHHHHhhhhhhhhhcccchHHHHhcC
Confidence 111122345667777777776 88888999999999997665433222 1222233334433322111111111111
Q ss_pred c-CCCc---cc-----cc----hhh-hhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC
Q psy14676 1203 A-SPLR---ID-----LR----PIL-TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS 1268 (1827)
Q Consensus 1203 ~-~~~~---~d-----l~----p~~-~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~ 1268 (1827)
+ +.++ .| .+ .++ +...-.+...+.|.=-++|.+++.+++.|+.+.++ ....-+..|...++
T Consensus 346 ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-----FA~~aldfLvDMfN 420 (823)
T KOG2259|consen 346 EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-----FAVRALDFLVDMFN 420 (823)
T ss_pred CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhc
Confidence 0 1110 00 00 111 11234566667777788999999999999886443 34445667788999
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh--
Q psy14676 1269 ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG-- 1346 (1827)
Q Consensus 1269 d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~-- 1346 (1827)
|+...||-.++..|..++... .-..+.+++++.++.|.+.+||+++=.-|++.-+.
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l----------------------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~ 478 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHL----------------------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDL 478 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHh----------------------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Confidence 999999999999988877631 11257889999999999999999998888874433
Q ss_pred -hhhhhHHHHHHhhhcCchhhHHHHHHHHHHHh
Q psy14676 1347 -NLQQYVPFVLKEIENQPKRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1347 -~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~ 1378 (1827)
.+.-.+..+++.++.-|+.+--++.+++-|-+
T Consensus 479 ~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 479 ECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred HHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhc
Confidence 33445666677666666666677788888755
No 87
>KOG4653|consensus
Probab=97.45 E-value=0.0075 Score=77.22 Aligned_cols=219 Identities=17% Similarity=0.180 Sum_probs=158.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhc--cCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc
Q psy14676 49 QEDVSVQLEALDILSDLLSRF--GALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL 126 (1827)
Q Consensus 49 ~~~~~v~~~al~iL~~l~~~~--~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L 126 (1827)
++-+.+|..++.-|..+++.- .+.+ ....++..++..|.|.++-|=-.|+.++..+++..+++.++.+.+.+.+.=
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~--~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k 815 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLI--QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEK 815 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 346789999999999999943 3333 345789999999999999999999999999999988888877776666543
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHH
Q psy14676 127 TTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCL 206 (1827)
Q Consensus 127 ~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll 206 (1827)
.+. .++.|-.+=++++.+++..|+-+..|.+.++..++..+.+++.+.|-+++.+++.++....-....++-.++..++
T Consensus 816 ~k~-~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il 894 (982)
T KOG4653|consen 816 KKL-QTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLIL 894 (982)
T ss_pred cCC-CccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 222 2445555669999999999999999999999999999998888899999988888877654333334444444444
Q ss_pred HHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhh
Q psy14676 207 TYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 286 (1827)
Q Consensus 207 ~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v 286 (1827)
...+- |.+.-|||||+..+..+..+.+..+.|++...
T Consensus 895 ~l~~~-------------------------------------------d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 895 SLETT-------------------------------------------DGSVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred HHHcc-------------------------------------------CCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 33211 12347999999999999888776555544322
Q ss_pred ----hHHHHhhc-CCCCHhHHHHHHHHHHHHH
Q psy14676 287 ----SPPLIARF-KEREENVKSDIFHAYMALL 313 (1827)
Q Consensus 287 ----~p~L~~~l-~e~ee~VR~aa~~al~~ll 313 (1827)
.-.+..+. .++++.+|.-+..++-.+-
T Consensus 932 l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 932 LIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 12222222 4566667777776665554
No 88
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.23 Score=63.18 Aligned_cols=308 Identities=11% Similarity=0.096 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHHhhccCCCCch----hHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy14676 35 CRRITGKLSTAIE----KQ---EDVSVQLEALDILSDLLSRFGALLPSF----HFVILTALLPQLSSPRQAVRKRTIVAL 103 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~----~~---~~~~v~~~al~iL~~l~~~~~~~l~~~----~~~il~~ll~~L~~~~~~VRk~Ai~aL 103 (1827)
..-++|++..-+. ++ .+++-.++|+..++.+.. |.....+. ..-+++.++|.++++-.-.|.||+.-+
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~i 484 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHH
Confidence 4446677766551 11 257778999999999988 54443332 335788889999999999999999999
Q ss_pred HHHHHhhchh-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh--chhhHHhHHHHHHHHHhhcccCchHHHHHHH
Q psy14676 104 SHLVMSCNLQ-LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA--GHRFAEHIERVMPLILKYSREEDDELREFCL 180 (1827)
Q Consensus 104 ~~l~~~~~~~-~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~--~~~~~p~l~~i~p~l~~~~~~~~delRe~al 180 (1827)
+.+.+..++. ...+..+.....+++ ++..++-++.-++..+..+. -..|..|++.+|+-++...++=+-+.- -
T Consensus 485 s~~eeDfkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~L---S 560 (970)
T COG5656 485 STIEEDFKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPL---S 560 (970)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHH---H
Confidence 9998887765 345566777777766 44567777777777777654 467888999999988887654222221 2
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHH-HhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhh
Q psy14676 181 QACEAFVQRCPKEITPHIQSITELCLT-YITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWK 259 (1827)
Q Consensus 181 ~ale~~~~~~p~e~~p~l~~ii~~ll~-~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWk 259 (1827)
..++.|+++.+++++||-+.++..+.+ +++.-. + -+++. +|-++-.||.+.
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq----~-------------l~ens----------~d~~s~vDDKqm- 612 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQ----S-------------LLENS----------SDTSSVVDDKQM- 612 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHH----H-------------HHcCC----------ccccccccHHHH-
Confidence 346899999999999999888877765 222100 0 00000 011122223221
Q ss_pred HHHHHHHHHHHHHHH---cCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 260 VRRAAAKCLEAIIAT---RRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 260 VRraAak~L~~l~~~---~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
+-.+-.+.+.+++-+ +|+.+...+....|++-.-+++.-.++-.+++.-+-... ..
T Consensus 613 aasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~t---------------------f~ 671 (970)
T COG5656 613 AASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYT---------------------FM 671 (970)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh---------------------HH
Confidence 111233344555544 345555567777887766666555555555544332111 11
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCH-hHHHHHHHHHHHHHHhCcccc---cCchhhHHHHHHHHh
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSI-RTRQDCLALLRELVQTLPGCL---APSLPALIPDVTSVA 396 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~-~vR~a~~~ll~~L~~vl~~~l---~~~l~~Llp~i~~~L 396 (1827)
...+.+.++.|...+++.++++.. ..-....-++.......+..+ .-|...+...+..++
T Consensus 672 skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l 735 (970)
T COG5656 672 SKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCL 735 (970)
T ss_pred HHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHH
Confidence 234567788888888888887764 333345555566666555544 235555555555665
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.39 E-value=0.0012 Score=64.00 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=71.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l 118 (1827)
+|.|++.+.+++++.+|..++.+|+++ ..+..++.+...++|+++.||..|+.+|+.+.. ...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD-------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHH
Confidence 588999996678999999999999921 345789999999999999999999999998852 335
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHH
Q psy14676 119 IDFLLEGLTTNKSTSTNRTYIQCFA 143 (1827)
Q Consensus 119 ~~~ll~~L~~~~~~~~r~~ai~~l~ 143 (1827)
++.+.+.+.++.+..+|..++++||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 6667777777677788999998886
No 90
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0071 Score=69.50 Aligned_cols=237 Identities=15% Similarity=0.174 Sum_probs=123.8
Q ss_pred hhHHHHHhhc-CCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVG-DNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTS-DIYQCTLVRLKAADIDQEVKERAISCMGQII 1163 (1827)
Q Consensus 1086 Lip~l~~~l~-D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~-~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~ 1163 (1827)
.+|.++..+. ....+..-||.+++..++.- ++..-+..++ .-+|.++..|. +...+||+.|+.|||.++
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSG-------tt~QTkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiA 185 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASG-------TTQQTKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIA 185 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccC-------cccceEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhcccc
Confidence 5566666662 33344555888887776631 1111111111 12233344454 778899999999999987
Q ss_pred HHhh---h-hhh-hhhhhhHHHHHHhhhhhh-hHHHHHHHHHHHhcCCC-ccccchhhhhhHhhhhhhhcchhHHHHHHH
Q psy14676 1164 CNLG---D-YLK-SELPVCLPILLDRLRNEI-TRLTTVKALTKIAASPL-RIDLRPILTDGIPILGSFLRKNQRALKLST 1236 (1827)
Q Consensus 1164 ~~~g---~-~l~-~~l~~lL~~Ll~~L~~e~-tR~~av~al~~ia~~~~-~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~a 1236 (1827)
.-.. + .|. .-+.++|..|...-..=. .|- +--.+..++..-. ..+ -.-+...+|.|..++-.-+.++-.-+
T Consensus 186 GDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn-~TWtLSNlcRGknP~P~-w~~isqalpiL~KLiys~D~evlvDA 263 (526)
T COG5064 186 GDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRN-ATWTLSNLCRGKNPPPD-WSNISQALPILAKLIYSRDPEVLVDA 263 (526)
T ss_pred CCchhHHHHHHhcCchHHHHHHHHhccchHHHHHH-hHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 4321 1 222 235556666542211000 122 2223455554211 111 11255678888877765555666666
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhh
Q psy14676 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVAD 1316 (1827)
Q Consensus 1237 l~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~ 1316 (1827)
.-|+.-|..-....+..-.=..+.+-|..+|++.+..+..+++..++.+......... +--. -.
T Consensus 264 ~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTq----------viI~------~G 327 (526)
T COG5064 264 CWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQ----------VIIN------CG 327 (526)
T ss_pred HHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcccee----------hhee------cc
Confidence 6677665442211111100001233455667777776666666666555443221110 0001 12
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhh
Q psy14676 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQ 1349 (1827)
Q Consensus 1317 l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~ 1349 (1827)
.++.|...+.++-+.+|..|...+.+|-+||..
T Consensus 328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnte 360 (526)
T COG5064 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTE 360 (526)
T ss_pred cHHHHHHHhcChhhhhhhhhheeecccccCCHH
Confidence 456666678888889999999999998888754
No 91
>KOG0414|consensus
Probab=97.38 E-value=1.3 Score=59.91 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh-hchhH--------HHHHHHHHHHhccC
Q psy14676 58 ALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMS-CNLQL--------YTKLIDFLLEGLTT 128 (1827)
Q Consensus 58 al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~-~~~~~--------~~~l~~~ll~~L~~ 128 (1827)
.....+.++..+...+......-+..+++.|++.+-..|..-+.++++++.. +.+.. -..+++.+.+++.+
T Consensus 291 g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~D 370 (1251)
T KOG0414|consen 291 GPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLD 370 (1251)
T ss_pred chhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444433333334566677778888889999888888888764 33221 12355566666543
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC
Q psy14676 129 NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 129 ~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p 191 (1827)
.++-+|-.+++.+..+++......+ ...+++.....-+.+...=||..|.+-+..|..+-|
T Consensus 371 -vsa~vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 371 -VSAYVRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred -ccHHHHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 5688999999999999986554433 356788888888888888899999999988888765
No 92
>KOG1820|consensus
Probab=97.37 E-value=0.011 Score=78.62 Aligned_cols=344 Identities=17% Similarity=0.175 Sum_probs=212.6
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch----
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH---- 151 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~---- 151 (1827)
....++.....+|.++.+..|.....++..+...- ....++..+...+.. ..+..-..++.++.++.+..+.
T Consensus 60 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~~~e~~~~~~~~-k~pk~~~~~~~~~~~lv~~~g~p~~~ 135 (815)
T KOG1820|consen 60 KNIQLLSFGLKCLDSKRVNIRDTKTQSLLRIGKLE---DIKEVVEAAKALLSF-KSPKKIAAAVAAVLSLVEEFGKPKVP 135 (815)
T ss_pred cceeeccchhhhcccccccccCcchhHHHHHHHhh---hhHHHHHHHHhhccc-cCchhHHHHHHHHHHHHHHhcCCCCc
Confidence 34466666777777777777777777777763322 123344444444432 2234455666677777665542
Q ss_pred --hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH-----HHHHHHHHHhcc-------------
Q psy14676 152 --RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ-----SITELCLTYITY------------- 211 (1827)
Q Consensus 152 --~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~-----~ii~~ll~~l~~------------- 211 (1827)
.|.+|+..++ |-.+|..+...+..+.+.++..+.+|+- .++.-+-.+...
T Consensus 136 ~~~~~~~~~~l~----------D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (815)
T KOG1820|consen 136 SKAFIKHVGSLA----------DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLL 205 (815)
T ss_pred cccccccCcccc----------ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhcccccccccccccccc
Confidence 2334444333 4556777777777777777776666542 222222222111
Q ss_pred --------CCCCCc--ccccccCCCCCC-CCCCCCcccCCCCCCCCCCCC-----CCCccchhhHHHHHHHHHHHHHHHc
Q psy14676 212 --------DPNYNY--EDEEEGLGGEGG-GEGMDTEEEDGEDEGEDDNEY-----SDDDDMSWKVRRAAAKCLEAIIATR 275 (1827)
Q Consensus 212 --------dpn~~~--~ddd~~~~~~~~-~~~~d~~~~d~dde~e~~~e~-----sdddD~sWkVRraAak~L~~l~~~~ 275 (1827)
+||... +.+........+ +..+ .+..|.-+..+.-+.. ..-.+.-|+-|..|...+-.++...
T Consensus 206 ~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~-~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~ 284 (815)
T KOG1820|consen 206 KSQPQDESDPNVKEQLEKPERGLQRSKSGFTSP-IDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEA 284 (815)
T ss_pred ccccccccCCChhhcccccccccccccCCCCCC-ccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhcc
Confidence 122100 000000000000 0000 0000000000000000 0112345999999999998888876
Q ss_pred C-CchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHH
Q psy14676 276 R-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQ 354 (1827)
Q Consensus 276 ~-~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~ 354 (1827)
+ +....++..+..++-.+++|.+-+|-.-++..+..+....+ .....+...+.|.++..
T Consensus 285 ~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr--------------------~~~~~~~~~v~p~lld~ 344 (815)
T KOG1820|consen 285 KKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR--------------------PLFRKYAKNVFPSLLDR 344 (815)
T ss_pred ccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc--------------------hhhHHHHHhhcchHHHH
Confidence 6 55566888888889999999999999999999988886543 22456677778888889
Q ss_pred hccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy14676 355 LREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 434 (1827)
Q Consensus 355 L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~ 434 (1827)
++|+.+.+|.+....+....+ +-++..+.+.|...+.+
T Consensus 345 lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~------------------------------------ 382 (815)
T KOG1820|consen 345 LKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKG------------------------------------ 382 (815)
T ss_pred hhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcC------------------------------------
Confidence 999999999998888877776 44566777888887743
Q ss_pred cccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 435 DMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 435 d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
.+.++|.....++.......+ -.+..-+..+.|++++..+|+...||.+|++++..+.+++|
T Consensus 383 -knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 383 -KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred -CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666665 34556778899999999999999999999999999999988
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.26 E-value=0.00022 Score=62.54 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHH
Q psy14676 870 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEA 923 (1827)
Q Consensus 870 ~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~ 923 (1827)
|.+|..++.++|.++...++.+.+|+++++|.++..++|++++||..|+.||+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999999874
No 94
>KOG2956|consensus
Probab=97.25 E-value=0.01 Score=71.72 Aligned_cols=172 Identities=17% Similarity=0.221 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhhc
Q psy14676 33 NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSP-RQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~-~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
..-.+|+--+++-+.+..+...+..||.+|.++++.-+..+-.+-.-....+++.=.|. +..+|.++-.|+..++.+.+
T Consensus 325 q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 34466777777888765688899999999999999988877665444444455555554 45777777777777777776
Q ss_pred hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC
Q psy14676 112 LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRC 190 (1827)
Q Consensus 112 ~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~ 190 (1827)
-.-+..+ ..++. . .+...--.++.++..+++... +.+-+.+++|+|.+++........+|..|..+|-+++.+.
T Consensus 405 ~~~I~~i-~~~Il---t-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 405 LQCIVNI-SPLIL---T-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred hhHHHHH-hhHHh---c-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 5443332 22222 2 233455667778888888775 6688899999999999999889999999999999999999
Q ss_pred C-CccccchHHHHHHHHHHh
Q psy14676 191 P-KEITPHIQSITELCLTYI 209 (1827)
Q Consensus 191 p-~e~~p~l~~ii~~ll~~l 209 (1827)
| ++|.||+..+-..-++.+
T Consensus 480 G~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 480 GMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred hHHhhhhHhhhccHHHHHHH
Confidence 9 899999987655555444
No 95
>KOG0168|consensus
Probab=97.22 E-value=0.14 Score=65.97 Aligned_cols=174 Identities=12% Similarity=0.131 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhch
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNL 112 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~ 112 (1827)
.+.++|-|...+..+.++++..-|+.+|..+++-+++...- .+...+++|++.|.. +=-.|-+.+..|+..+....+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 57899999999988889999999999999999999886533 233356666666654 3357889999999999988877
Q ss_pred hHHHH--H--HHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 113 QLYTK--L--IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 113 ~~~~~--l--~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
..++. + +-.++..+. ...+|.|+...+.+|......=-.|+-+.+|++...++..|...-|+..-++-.++.
T Consensus 289 AiL~AG~l~a~LsylDFFS----i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFS----IHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHhcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 65532 1 123333433 347888999999999887543334667799999999998888888877776666655
Q ss_pred hC---CCcccc-chHHHHHHHHHHhccC
Q psy14676 189 RC---PKEITP-HIQSITELCLTYITYD 212 (1827)
Q Consensus 189 ~~---p~e~~p-~l~~ii~~ll~~l~~d 212 (1827)
.. |+.+.. +-..+|.-+.+.+.-.
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 43 111111 1134555555555443
No 96
>KOG1077|consensus
Probab=97.19 E-value=0.49 Score=59.94 Aligned_cols=390 Identities=14% Similarity=0.160 Sum_probs=190.8
Q ss_pred hccccchhhHHHHHHhhhcccC-CCCchHHHHHHhccCC--hhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhh
Q psy14676 1010 ECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESLKSNS--ALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFL 1086 (1827)
Q Consensus 1010 ~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L~s~~--~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~L 1086 (1827)
.++.+.-...|..|+|.++... .+.+-+.|-+.|.+++ .-+|+.++..|-.+....++.+.+- ..
T Consensus 121 ~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~------------~W 188 (938)
T KOG1077|consen 121 SSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPG------------EW 188 (938)
T ss_pred hcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChh------------hH
Confidence 3444444456788888887653 3567777778886654 4577777666666667777776652 57
Q ss_pred hHHHHHhhcCCchhhHHHHHHHHHHHHHHhccC----------------CCCC-C-CCc------chhHHHHHHHHHHHH
Q psy14676 1087 LSPVIASVGDNFYKITAEALLVLQQFVKVIRPL----------------TSPS-S-YDF------APFTSDIYQCTLVRL 1142 (1827)
Q Consensus 1087 ip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~----------------~~~~-~-~~~------~~~l~~l~~~ll~~L 1142 (1827)
...+++.+.|..+.|..++...+..+++...+. ..++ . .++ .||+.-=+--++...
T Consensus 189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~ 268 (938)
T KOG1077|consen 189 AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY 268 (938)
T ss_pred HHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence 788899999999988887777777777642210 0000 0 000 122221111111111
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHH-HHHHHHhcCCCccccc-hhhhhhHhh
Q psy14676 1143 KAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTV-KALTKIAASPLRIDLR-PILTDGIPI 1220 (1827)
Q Consensus 1143 ~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av-~al~~ia~~~~~~dl~-p~~~~~l~~ 1220 (1827)
- .-.|..+|.+-.+++..++..+.+-.. .+. .......-+.+ .++.-+. ..|-+ ..+..++..
T Consensus 269 p-~~~D~~~r~~l~evl~~iLnk~~~~~~--~k~--------vq~~na~naVLFeaI~l~~----h~D~e~~ll~~~~~~ 333 (938)
T KOG1077|consen 269 P-TPEDPSTRARLNEVLERILNKAQEPPK--SKK--------VQHSNAKNAVLFEAISLAI----HLDSEPELLSRAVNQ 333 (938)
T ss_pred C-CCCCchHHHHHHHHHHHHHhccccCcc--ccc--------hHhhhhHHHHHHHHHHHHH----HcCCcHHHHHHHHHH
Confidence 1 122333333333333333332211000 000 00000000000 0011000 11222 233455666
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCccchhhHH
Q psy14676 1221 LGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 1299 (1827)
Q Consensus 1221 L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~ 1299 (1827)
|+.++..-+..+|.-+++.+..|+.+-.+ .+.+..=...+...+. +.|-.+|+-++..|-.+|..
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s---~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~----------- 399 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFS---IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV----------- 399 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccch---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-----------
Confidence 67777666666777777777766664211 1111111222223343 66777777777777666542
Q ss_pred hhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHh---hhhhhhhhhhHHHHHHhhhcCch-hhHHHHHHHHH
Q psy14676 1300 SILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLG---SIAVGNLQQYVPFVLKEIENQPK-RQYLLLHSLKE 1375 (1827)
Q Consensus 1300 ~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG---~i~~~~l~~~LP~Il~~i~~~~~-~q~~~l~aL~E 1375 (1827)
+..+.++.-+++.+......+|+-.+.... +--+....=|+-.|++.+.-.+. ..--+++=+-.
T Consensus 400 ------------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQ 467 (938)
T KOG1077|consen 400 ------------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQ 467 (938)
T ss_pred ------------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhhe
Confidence 122456666666666666666665543322 22233344577777776643110 00011222222
Q ss_pred HHhhccccccchhhhhchHH-HHHHHHhhhhcCCchhHHHHHHHHHHHhh---ccCCC----cchHHHHHhhhcCCHHHH
Q psy14676 1376 IISWQSTSTSGVAQLQQFVP-AIWAQLFLHCECQEEGTRNVVAECLGKLT---LIDPS----NLLPRLQESLKSNSALMR 1447 (1827)
Q Consensus 1376 ii~~~~~s~~g~~~L~~~~~-~i~~~L~~~~~~~~e~vR~~aAecLGkL~---~~~p~----~~lP~L~~~l~~~~~~~R 1447 (1827)
++. ..+++.+|.. .++.-|-+. .-.|..-.+++.-||..+ .-+|+ .....|.+.+...++..|
T Consensus 468 iVv-------Nnedlq~yaak~~fe~Lq~~--a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr 538 (938)
T KOG1077|consen 468 IVV-------NNEDLQGYAAKRLFEYLQKP--ACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTR 538 (938)
T ss_pred eEe-------cchhhhHHHHHHHHHHHhhh--HHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHH
Confidence 322 1345555542 233322221 112444555666666555 33343 344566777778889999
Q ss_pred HHHHHHHHHHhhhc
Q psy14676 1448 TTVLTAVKFTISDQ 1461 (1827)
Q Consensus 1448 ~t~l~Alk~~~~~~ 1461 (1827)
...++..-.++...
T Consensus 539 ~lLLtTyiKl~nl~ 552 (938)
T KOG1077|consen 539 ALLLTTYIKLINLF 552 (938)
T ss_pred HHHHHHHHHHHhhC
Confidence 88888776666543
No 97
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.19 E-value=0.0048 Score=68.53 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCC
Q psy14676 51 DVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNK 130 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~ 130 (1827)
|+.+|..++-++|+++-+++..+.+ .++.+...|.|+++.||+.|+.++.+++..-.-+.-.+++..++..+ .++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l-~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL-VDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH-cCC
Confidence 5789999999999999999887755 56677788999999999999999999987533233344556667666 456
Q ss_pred CHHHHHHHHHHHHHHHHH-hchhhHHhHHHHHHHHHhh
Q psy14676 131 STSTNRTYIQCFAAICRQ-AGHRFAEHIERVMPLILKY 167 (1827)
Q Consensus 131 ~~~~r~~ai~~l~~la~~-~~~~~~p~l~~i~p~l~~~ 167 (1827)
++.+|..+..++..+... .+..|.+++.+++-.+-..
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 789999999999999998 6777877777666554443
No 98
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.18 E-value=0.14 Score=64.66 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhc----CCC-CHHHHHHHHHHHHH
Q psy14676 34 VCRRITGKLSTAIEK---QEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQL----SSP-RQAVRKRTIVALSH 105 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~---~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L----~~~-~~~VRk~Ai~aL~~ 105 (1827)
..+.|+..|+..++. .++..+-...+ -++....+.+.++...+++.+...+ ++| +|.--..-..+++.
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iM----Rvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIM----RVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHH----HHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 357788888888855 33433433444 4444455555566666666666554 454 67888888899999
Q ss_pred HHHhhchh-------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHhhc-ccCchHHH
Q psy14676 106 LVMSCNLQ-------LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAEHIERVMPLILKYS-REEDDELR 176 (1827)
Q Consensus 106 l~~~~~~~-------~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p~l~~i~p~l~~~~-~~~~delR 176 (1827)
++....+. .-..+++.+..-|+++- .+-.-.++|.++.+.+..+ ..+.+.+..++|.++.-. .+...-+-
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP 177 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP 177 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC
Confidence 98875532 22345566666666542 3456778999999999888 666667777888777542 22222221
Q ss_pred HHHHHHHHHHHHhCCCccc--cchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCc
Q psy14676 177 EFCLQACEAFVQRCPKEIT--PHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 254 (1827)
Q Consensus 177 e~al~ale~~~~~~p~e~~--p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sddd 254 (1827)
....-+.+++++.|..+. +++..++.++.+.+...-| |
T Consensus 178 -alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~-------D-------------------------------- 217 (435)
T PF03378_consen 178 -ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN-------D-------------------------------- 217 (435)
T ss_dssp -HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC-------H--------------------------------
T ss_pred -cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc-------c--------------------------------
Confidence 223346788888888764 7888999999888765311 0
Q ss_pred cchhhHHHHHHHHHHHHHHHcC-CchhhhHHhhhHHHHhhcC-CCCHhHHHHHHHHHHHH
Q psy14676 255 DMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFK-EREENVKSDIFHAYMAL 312 (1827)
Q Consensus 255 D~sWkVRraAak~L~~l~~~~~-~~l~~~~~~v~p~L~~~l~-e~ee~VR~aa~~al~~l 312 (1827)
..+-+.|.+++.+.| +.+.+|++.++-.+..|+. .+-+..+..-+..++.+
T Consensus 218 -------~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 218 -------HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp -------HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 125678999999998 4789999999999999994 45555544444444433
No 99
>KOG1078|consensus
Probab=97.18 E-value=0.14 Score=65.55 Aligned_cols=264 Identities=19% Similarity=0.247 Sum_probs=135.1
Q ss_pred hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhh
Q psy14676 1187 NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPL 1266 (1827)
Q Consensus 1187 ~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~l 1266 (1827)
.|..-..|++++..+..-. ...+...+..|..++......+|-++...|+.++..++..... -=.+|-++
T Consensus 258 ~emV~~EaArai~~l~~~~-----~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~-----cN~elE~l 327 (865)
T KOG1078|consen 258 SEMVIYEAARAIVSLPNTN-----SRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV-----CNLDLESL 327 (865)
T ss_pred hHHHHHHHHHHHhhccccC-----HhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc-----cchhHHhh
Confidence 3444566777666554322 1123345666777777777778888888888888776655332 12356677
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhH---HHHHHHhcCCCCHhHHHHHHHHHhhh
Q psy14676 1267 VSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADL---KQVILNAFTPTSEEVKSAASYTLGSI 1343 (1827)
Q Consensus 1267 l~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l---~~~~l~~~~~~s~eVr~aAa~aLG~i 1343 (1827)
++|.++.+...++..|- +. |... +..-+ ++.|..-+.|++.-|-..|..+|...
T Consensus 328 Itd~NrsIat~AITtLL---KT-----------------G~e~---sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 328 ITDSNRSIATLAITTLL---KT-----------------GTES---SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK 384 (865)
T ss_pred hcccccchhHHHHHHHH---Hh-----------------cchh---HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh
Confidence 78887777766554332 11 1110 11222 23333333333333333333333321
Q ss_pred hhhhhhhhHHHHHHhhhcCc--hhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy14676 1344 AVGNLQQYVPFVLKEIENQP--KRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG 1421 (1827)
Q Consensus 1344 ~~~~l~~~LP~Il~~i~~~~--~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLG 1421 (1827)
-----..+++++-+.+.+.+ +....+..++.-+|.....+ + ...+..|...+++-+ -+..+..-|+
T Consensus 385 fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-------K---e~~L~~LCefIEDce--~~~i~~rILh 452 (865)
T KOG1078|consen 385 FPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-------K---ERGLEHLCEFIEDCE--FTQIAVRILH 452 (865)
T ss_pred ccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-------h---hHHHHHHHHHHHhcc--chHHHHHHHH
Confidence 11000113333333333221 11222233333333211000 0 011111111111111 2344444455
Q ss_pred Hhhc-----cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHH
Q psy14676 1422 KLTL-----IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKV 1496 (1827)
Q Consensus 1422 kL~~-----~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l 1496 (1827)
.|+. .+|+.|+-++-+.+-=+++.+|..+++|+..+... ++.++ ..+
T Consensus 453 lLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-----~~~l~-----------------------~sI 504 (865)
T KOG1078|consen 453 LLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-----DVVLL-----------------------PSI 504 (865)
T ss_pred HHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-----CCCcc-----------------------ccH
Confidence 5554 34677888888887778899999999999888722 22221 234
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhh
Q psy14676 1497 VKMLLRLLEDKNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1497 ~~~ll~~l~D~~~~Vr~~a~~~Lg~L~ 1523 (1827)
.-.+.+++.|+|..||..|.-.|..+-
T Consensus 505 ~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 505 LVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 456678999999999999988887776
No 100
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.015 Score=66.94 Aligned_cols=260 Identities=15% Similarity=0.220 Sum_probs=165.8
Q ss_pred hhHHHHHHhhhh---hhhHHHHHHHHHHHhcCCCccccch-hhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCc
Q psy14676 1176 VCLPILLDRLRN---EITRLTTVKALTKIAASPLRIDLRP-ILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 1251 (1827)
Q Consensus 1176 ~lL~~Ll~~L~~---e~tR~~av~al~~ia~~~~~~dl~p-~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l 1251 (1827)
-+.|.+++.+.+ +.-...|.-+++.|+..+.. +-.- .-...+|.+..+|...+.++|.-++-||+.++--... .
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~-QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ-QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-C 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc-ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-H
Confidence 367788888743 33478999999999875431 1010 1145789999999999999999999999976542111 0
Q ss_pred ChH-hHHHHHHHhhhhcCCCChh--HHHHHHHHHHHHHHhCCCccchhhHHhhhhhccccc--CCCchhhHHHHHHHhcC
Q psy14676 1252 STE-MLNKVTVELAPLVSESDLH--IAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHT--DLTSVADLKQVILNAFT 1326 (1827)
Q Consensus 1252 ~~~-~~~~ll~~L~~ll~d~D~~--l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~--~~~~~~~l~~~~l~~~~ 1326 (1827)
..- +-.+++..+..++..+-.| +...+--.|+.+|+ |+.- +++.+...+|++.+.+.
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR------------------GknP~P~w~~isqalpiL~KLiy 253 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR------------------GKNPPPDWSNISQALPILAKLIY 253 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC------------------CCCCCCchHHHHHHHHHHHHHHh
Confidence 000 1112344444555554443 33444445666666 3332 23345678999999999
Q ss_pred CCCHhHHHHHHHHHhhhhhhh-------hh-hhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhh-hh-chHH
Q psy14676 1327 PTSEEVKSAASYTLGSIAVGN-------LQ-QYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQ-LQ-QFVP 1395 (1827)
Q Consensus 1327 ~~s~eVr~aAa~aLG~i~~~~-------l~-~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~-L~-~~~~ 1395 (1827)
+.++||-.-|..|+.-+..|. ++ -..+-+++.+.. +.+.|.-.+.+++-|+...... ..- +. .+++
T Consensus 254 s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q---TqviI~~G~L~ 330 (526)
T COG5064 254 SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ---TQVIINCGALK 330 (526)
T ss_pred hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc---eehheecccHH
Confidence 999999999988877644332 11 122445555443 4456777888888886511100 000 11 1333
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q psy14676 1396 AIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQM 1462 (1827)
Q Consensus 1396 ~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~ 1462 (1827)
.+ ..| +.+..+.+|.-++-++..++..+. ..++|.|..++.+.++.+|.-+.-|+....++..
T Consensus 331 a~-~~l---Ls~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 331 AF-RSL---LSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred HH-HHH---hcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 32 222 346667899999988988887664 3688999999999999999888889888877643
No 101
>KOG2021|consensus
Probab=97.16 E-value=1.5 Score=56.28 Aligned_cols=332 Identities=14% Similarity=0.142 Sum_probs=182.1
Q ss_pred HHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy14676 34 VCRRITGKLST-------AIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHL 106 (1827)
Q Consensus 34 v~~~L~P~Ll~-------~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l 106 (1827)
.+..-+|.|.+ .-++-.++++...+|+++|..+.-.--.+- .....++.+...|. -..+|..|+.|+-.+
T Consensus 182 MR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLI-aNd~f~nLLy~fl~--ieelR~aac~cilai 258 (980)
T KOG2021|consen 182 MRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLI-ANDYFLNLLYKFLN--IEELRIAACNCILAI 258 (980)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 34445666642 223333788999999999988765422111 13456777777776 568999999999887
Q ss_pred HHh-hchhHHHHHHHHHHHhc------cCC--CCHHHHHHHHHHHHHHH--------HH-------hchhhHHhHHHHHH
Q psy14676 107 VMS-CNLQLYTKLIDFLLEGL------TTN--KSTSTNRTYIQCFAAIC--------RQ-------AGHRFAEHIERVMP 162 (1827)
Q Consensus 107 ~~~-~~~~~~~~l~~~ll~~L------~~~--~~~~~r~~ai~~l~~la--------~~-------~~~~~~p~l~~i~p 162 (1827)
+.- +.+-.--+++..+-+.+ +.+ .+.+.-...-..+...+ +- ........+-.++|
T Consensus 259 VsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vp 338 (980)
T KOG2021|consen 259 VSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVP 338 (980)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHH
Confidence 764 32221112333331211 111 22222222111111111 11 01122334456899
Q ss_pred HHHhhcccCchHHHHHHHHHHHHHHH---hCC---CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCc
Q psy14676 163 LILKYSREEDDELREFCLQACEAFVQ---RCP---KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTE 236 (1827)
Q Consensus 163 ~l~~~~~~~~delRe~al~ale~~~~---~~p---~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~ 236 (1827)
++++++++++|++--.-+..+-.++. +.+ ..-.-++..++...++-|+|||.|-.+|+-. +
T Consensus 339 yllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~t-----------g-- 405 (980)
T KOG2021|consen 339 YLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVT-----------G-- 405 (980)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCC-----------C--
Confidence 99999999888876555555533333 333 2233578889999999999998872221100 0
Q ss_pred ccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhh
Q psy14676 237 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGT 316 (1827)
Q Consensus 237 ~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~ 316 (1827)
+++++.--.+|+-----++++....|+++.......+..-...-++..|..-+.|+.-+-.+.+.+
T Consensus 406 --------------~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l 471 (980)
T KOG2021|consen 406 --------------DEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECL 471 (980)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcc
Confidence 001112225777665566777766676555444444444334446666766666665555555444
Q ss_pred cccCCCCCCCCCCCC-----------------CCCChH---hhH-------------HhhhHHHHHHHH--HHhccCCHh
Q psy14676 317 RTFSPLTPSDPNQMD-----------------QEDSPL---CLL-------------STQVPSLVKALQ--CQLREKSIR 361 (1827)
Q Consensus 317 ~~~~~~~~~~~~~~~-----------------~~~~~~---~~l-------------~~~lp~Iv~~l~--~~L~d~~~~ 361 (1827)
........+ .+.+. ..++.. -.+ .+.+|.++.+.+ ++|..++.+
T Consensus 472 ~~~~~~~ns-gd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~ 550 (980)
T KOG2021|consen 472 KNNYFGLNS-GDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNEN 550 (980)
T ss_pred ccccccccC-ccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccc
Confidence 321100000 00000 000000 000 124666666555 357788899
Q ss_pred HHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHh
Q psy14676 362 TRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVA 396 (1827)
Q Consensus 362 vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L 396 (1827)
||.-+|-++.....-+...+-+++..++.-|...|
T Consensus 551 Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 551 VRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877777778888888887777
No 102
>KOG4524|consensus
Probab=97.13 E-value=0.067 Score=70.04 Aligned_cols=308 Identities=15% Similarity=0.100 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HHHHHHHHHHHhccCC-CC
Q psy14676 57 EALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LYTKLIDFLLEGLTTN-KS 131 (1827)
Q Consensus 57 ~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~~~l~~~ll~~L~~~-~~ 131 (1827)
-+++.++.++.-.|..+.+..-..+-.++..+.++++.|+..|..|+..++..|+-. ++..-.+.++..++.. ..
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~ 646 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT 646 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc
Confidence 456777777777777766655555556677788999999999999999999988642 3444456666665221 11
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC----C-ccccchH-HHHHHH
Q psy14676 132 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP----K-EITPHIQ-SITELC 205 (1827)
Q Consensus 132 ~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p----~-e~~p~l~-~ii~~l 205 (1827)
..+-..+-+.+.-+.+.......||+++++..++..+..-..---+.-++-+.++.+... + ++-.++. ......
T Consensus 647 ~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~ 726 (1014)
T KOG4524|consen 647 SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQS 726 (1014)
T ss_pred CCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 112233446667777777777788899988888877643211100111122233333222 1 1111110 000000
Q ss_pred HHHhccCCCCCccccc---ccCCC-C--------CC-CCCCCCcccCCCCCCC---CCCCCCCCccchhhHHHHHHHHHH
Q psy14676 206 LTYITYDPNYNYEDEE---EGLGG-E--------GG-GEGMDTEEEDGEDEGE---DDNEYSDDDDMSWKVRRAAAKCLE 269 (1827)
Q Consensus 206 l~~l~~dpn~~~~ddd---~~~~~-~--------~~-~~~~d~~~~d~dde~e---~~~e~sdddD~sWkVRraAak~L~ 269 (1827)
-+.+..-|.-.+++++ ++..+ + .+ +-.+++.++.++.+.| +.+++-|.+-.
T Consensus 727 ~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~------------- 793 (1014)
T KOG4524|consen 727 TKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPI------------- 793 (1014)
T ss_pred HHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCC-------------
Confidence 0000000100000000 00000 0 00 0011110000000000 11112111000
Q ss_pred HHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHH
Q psy14676 270 AIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVK 349 (1827)
Q Consensus 270 ~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~ 349 (1827)
++.-..+..+|+..-+..+.+..-.+|.+|+..+...+--... ....+-+.+-+..|
T Consensus 794 ------~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~-----------------~~n~LlPlvhq~W~ 850 (1014)
T KOG4524|consen 794 ------LPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLAT-----------------YHNLLLPLVHQTWP 850 (1014)
T ss_pred ------CChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhc-----------------cchhHhHHHHhhhh
Confidence 0111112334444444556777778899999888654321111 11356667777788
Q ss_pred HHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-cCchhhHHHHHHHHhhhhh
Q psy14676 350 ALQCQLREKSIRTRQDCLALLRELVQTLPGCL-APSLPALIPDVTSVAEWDE 400 (1827)
Q Consensus 350 ~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~~~l~~Llp~i~~~L~~~~ 400 (1827)
.++..++++++-+.+-|++++..+....++.+ +.++..++|.+...+++..
T Consensus 851 ~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 851 SVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999988855 6788999999998886654
No 103
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.09 E-value=0.003 Score=70.13 Aligned_cols=107 Identities=26% Similarity=0.374 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHhhccCCC---cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhccc
Q psy14676 1410 EGTRNVVAECLGKLTLIDPS---NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSI 1486 (1827)
Q Consensus 1410 e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~ 1486 (1827)
..+|+.+..++|-|+.-+|. .++|.+...|+++++.+|.+++..+..++....-.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik---------------------- 59 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK---------------------- 59 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----------------------
Confidence 45899999999999999985 78999999999999999999999999999643111
Q ss_pred ccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhc
Q psy14676 1487 KLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMV 1543 (1827)
Q Consensus 1487 ~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~ 1543 (1827)
+-..++..++.++.|+++.||..|..++..+.+...++.....+..++..+.
T Consensus 60 -----~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 60 -----VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred -----ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 1124557788899999999999999999999987666666666666655443
No 104
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.07 E-value=0.0021 Score=69.76 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhh
Q psy14676 755 PGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNL 834 (1827)
Q Consensus 755 ~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r 834 (1827)
|+..|+++|+.|++.+++... ...-.++++++|.++ ++++..-..+.+-...-.. .+....
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s--~~iR~E~lr~lGilG-ALDP~~~k~~~~~~~~~~~-~~~~~~--------------- 64 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQS--QSIRREALRVLGILG-ALDPYKHKSIQKSLDSKSS-ENSNDE--------------- 64 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCC--HHHHHHHHHHhhhcc-ccCcHHHhcccccCCcccc-cccccc---------------
Confidence 678899999999999976421 333447789999877 5554322111110000000 000000
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCC-ChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHH
Q psy14676 835 QLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNK-STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 913 (1827)
Q Consensus 835 ~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~v 913 (1827)
.....-+..-....++++|..+.-.-++...+|+ -+..+..+++++..+.++.|.+..+|+++|+|.+++.++..++..
T Consensus 65 ~~~~~l~~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~ 144 (160)
T PF11865_consen 65 STDISLPMMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSL 144 (160)
T ss_pred chhhHHhhccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHH
Confidence 0000001111112577888887666666544443 456677999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHh
Q psy14676 914 REFCLQACEAFVQ 926 (1827)
Q Consensus 914 re~al~Ale~~v~ 926 (1827)
||+-++.+..++.
T Consensus 145 ~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 145 REFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
No 105
>KOG0567|consensus
Probab=97.06 E-value=0.017 Score=65.30 Aligned_cols=231 Identities=21% Similarity=0.240 Sum_probs=136.7
Q ss_pred hhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCch
Q psy14676 957 NAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLL 1036 (1827)
Q Consensus 957 ~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~ll 1036 (1827)
+.|.+.++..|....|.+|.... ...+|.+...+. .++.++-||--|+++||.+. -..++
T Consensus 43 ka~~d~s~llkhe~ay~LgQ~~~---------------~~Av~~l~~vl~--desq~pmvRhEAaealga~~---~~~~~ 102 (289)
T KOG0567|consen 43 KAFIDDSALLKHELAYVLGQMQD---------------EDAVPVLVEVLL--DESQEPMVRHEAAEALGAIG---DPESL 102 (289)
T ss_pred Hhcccchhhhccchhhhhhhhcc---------------chhhHHHHHHhc--ccccchHHHHHHHHHHHhhc---chhhH
Confidence 45555556666667777764211 122333433332 24566778888999999988 35677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHhcc-c---cccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHH
Q psy14676 1037 PRLQESLKSNSALMRTTHQSNQTFNVIIQR-N---DIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQF 1112 (1827)
Q Consensus 1037 P~L~~~L~s~~~~~R~~a~~~L~~l~~~~~-~---~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~l 1112 (1827)
+.+.+..+++-..+|++...++..+--... + ...|| .| ..+--| .-..+..++|.+-+..-..+
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~---~S-----vdPa~p----~~~ssv~~lr~~lld~t~~l 170 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPY---IS-----VDPAPP----ANLSSVHELRAELLDETKPL 170 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcc---cc-----CCCCCc----cccccHHHHHHHHHhcchhH
Confidence 888888888888899987777775532221 1 12233 00 000000 00001123344444433334
Q ss_pred HHHhccCC---CCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh
Q psy14676 1113 VKVIRPLT---SPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI 1189 (1827)
Q Consensus 1113 v~~l~~~~---~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~ 1189 (1827)
..-.+++. ..++ +.-+..+.+.+. +.+.-.|-.+..++|++-+.+ -++.+...|.+.-.+..
T Consensus 171 ~~Ry~amF~LRn~g~-------EeaI~al~~~l~--~~SalfrhEvAfVfGQl~s~~------ai~~L~k~L~d~~E~pM 235 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGT-------EEAINALIDGLA--DDSALFRHEVAFVFGQLQSPA------AIPSLIKVLLDETEHPM 235 (289)
T ss_pred HHHHhhhhHhhccCc-------HHHHHHHHHhcc--cchHHHHHHHHHHHhhccchh------hhHHHHHHHHhhhcchH
Confidence 33333321 1111 223445556666 556777888888888876432 13344444444444455
Q ss_pred hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy14676 1190 TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLV 1245 (1827)
Q Consensus 1190 tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~ 1245 (1827)
.|..|++|||.|+. .++++.|..++.+..+-+|.++..+|+.+--
T Consensus 236 VRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 236 VRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 69999999999985 5788999999999999999999999986544
No 106
>KOG1061|consensus
Probab=97.05 E-value=0.35 Score=62.48 Aligned_cols=410 Identities=18% Similarity=0.202 Sum_probs=227.8
Q ss_pred hhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhc
Q psy14676 893 EHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 972 (1827)
Q Consensus 893 ~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~ 972 (1827)
.-+..+.|-++++++-.|-+++-.+ ...+.++.. ..|.+. -.....+...+.+++..+|..|.+
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlv----yLYl~nYa~-~~P~~a-----------~~avnt~~kD~~d~np~iR~lAlr 108 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLV----YLYLMNYAK-GKPDLA-----------ILAVNTFLKDCEDPNPLIRALALR 108 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHH----HHHHHHhhc-cCchHH-----------HhhhhhhhccCCCCCHHHHHHHhh
Confidence 3466677888888887665543221 111111111 111110 001123345677778888888888
Q ss_pred ccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCC-----CCchHHHHHHhccCC
Q psy14676 973 TLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP-----SNLLPRLQESLKSNS 1047 (1827)
Q Consensus 973 ~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~-----~~llP~L~~~L~s~~ 1047 (1827)
++|... ...+...+..-+.++++++...+|..++-|..++....+ ..+++.+...+.+++
T Consensus 109 tm~~l~---------------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~ 173 (734)
T KOG1061|consen 109 TMGCLR---------------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSN 173 (734)
T ss_pred ceeeEe---------------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCC
Confidence 776531 122334455566677799999999999999999887754 458889999999888
Q ss_pred hhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCc
Q psy14676 1048 ALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDF 1127 (1827)
Q Consensus 1048 ~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~ 1127 (1827)
+.+-..|+.+|..+....++....+ ...+++..++.++.+...=-+.+.+.. +.... | .+-
T Consensus 174 p~VVAnAlaaL~eI~e~~~~~~~~~---------l~~~~~~~lL~al~ec~EW~qi~IL~~---l~~y~-p------~d~ 234 (734)
T KOG1061|consen 174 PMVVANALAALSEIHESHPSVNLLE---------LNPQLINKLLEALNECTEWGQIFILDC---LAEYV-P------KDS 234 (734)
T ss_pred chHHHHHHHHHHHHHHhCCCCCccc---------ccHHHHHHHHHHHHHhhhhhHHHHHHH---HHhcC-C------CCc
Confidence 9999999999996655544321111 134555555555543221111112221 22111 1 111
Q ss_pred chhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh-hhHHHHHHHHHHHhcCCC
Q psy14676 1128 APFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE-ITRLTTVKALTKIAASPL 1206 (1827)
Q Consensus 1128 ~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e-~tR~~av~al~~ia~~~~ 1206 (1827)
.-..++.+-+..++. .....|--.|...+-+++..+...-...+..+-|.++..+..+ ..-..+++-+..+..+..
T Consensus 235 -~ea~~i~~r~~p~Lq--h~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p 311 (734)
T KOG1061|consen 235 -REAEDICERLTPRLQ--HANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRP 311 (734)
T ss_pred -hhHHHHHHHhhhhhc--cCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhCh
Confidence 234455555555555 3334443444444444443332211122233333333333222 235666666666654321
Q ss_pred ccccchhhhhhHhhhhhhhcchh-HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHH
Q psy14676 1207 RIDLRPILTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSI 1285 (1827)
Q Consensus 1207 ~~dl~p~~~~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l 1285 (1827)
. ++. .....=|.+.++ -.++..=++++..++. ++.+..++.+|...-++-|.+...-++.+++.+
T Consensus 312 ~-----~~~--~~~~~Ff~kynDPiYvK~eKleil~~la~-------~~nl~qvl~El~eYatevD~~fvrkaIraig~~ 377 (734)
T KOG1061|consen 312 E-----ILK--VEIKVFFCKYNDPIYVKLEKLEILIELAN-------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRL 377 (734)
T ss_pred H-----HHH--hHhHeeeeecCCchhhHHHHHHHHHHHhh-------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhh
Confidence 1 111 111112344555 2366666677766654 234666899999999999999999999999988
Q ss_pred HHhCCCcc--ch--------------hhHHhhhhhcccccCCCchhhHHHHHHHhcCC-CCHhHHHHHHHHHhhh--hhh
Q psy14676 1286 AKIQPNAL--VE--------------PAAASILPQIGRHTDLTSVADLKQVILNAFTP-TSEEVKSAASYTLGSI--AVG 1346 (1827)
Q Consensus 1286 ~~~~~~~~--~~--------------~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~-~s~eVr~aAa~aLG~i--~~~ 1346 (1827)
+....+.- +. .++...+..++|+++..+ ..+.+++-..+.+ ..++.|.+...-+|+- ...
T Consensus 378 aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~ 456 (734)
T KOG1061|consen 378 AIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERIE 456 (734)
T ss_pred hhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhccC
Confidence 87655430 00 012223345667764332 4566666666655 4688999999999984 456
Q ss_pred hhhhhHHHHHHhhhcCc-hhhHHHH
Q psy14676 1347 NLQQYVPFVLKEIENQP-KRQYLLL 1370 (1827)
Q Consensus 1347 ~l~~~LP~Il~~i~~~~-~~q~~~l 1370 (1827)
+...+|-.+++.+.+.+ ..|.-+|
T Consensus 457 ~a~elL~~f~en~~dE~~~Vql~LL 481 (734)
T KOG1061|consen 457 NALELLESFLENFKDETAEVQLELL 481 (734)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHH
Confidence 77778888888776643 3444444
No 107
>KOG4653|consensus
Probab=96.91 E-value=0.023 Score=73.02 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=131.2
Q ss_pred HHHHhhhcC--CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccc
Q psy14676 858 DFLLEGLTT--NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH 935 (1827)
Q Consensus 858 ~~l~~~l~~--~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~ 935 (1827)
+.+.+.+.. ++-+++|.+.++++..+.+.-.+.=.-....|+...++.+.|+|..|-..|.++.-.+++.++..|.|-
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~d 806 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPD 806 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHH
Confidence 334444433 677899999999999999866554445556788888888888888876666665555555554444443
Q ss_pred cccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccc
Q psy14676 936 IQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEG 1015 (1827)
Q Consensus 936 l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~ 1015 (1827)
+.+ .|.... +....+
T Consensus 807 L~e-------------------~Y~s~k----------------------------------------------~k~~~d 821 (982)
T KOG4653|consen 807 LSE-------------------EYLSEK----------------------------------------------KKLQTD 821 (982)
T ss_pred HHH-------------------HHHhcc----------------------------------------------cCCCcc
Confidence 221 110000 000011
Q ss_pred hhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhc
Q psy14676 1016 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVG 1095 (1827)
Q Consensus 1016 vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~ 1095 (1827)
.|-.++|+++++ ....++.+..| ...|+..++.+++
T Consensus 822 ~~lkVGEai~k~----------------------------------~qa~Gel~~~y----------~~~Li~tfl~gvr 857 (982)
T KOG4653|consen 822 YRLKVGEAILKV----------------------------------AQALGELVFKY----------KAVLINTFLSGVR 857 (982)
T ss_pred ceehHHHHHHHH----------------------------------HHHhccHHHHH----------HHHHHHHHHHhcC
Confidence 122233333332 22333333334 8899999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14676 1096 DNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS 1172 (1827)
Q Consensus 1096 D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~ 1172 (1827)
|+....|+.++..+|.+....+- ....++.+++..++.-.. .|...-||++|++.+..++..+|..+-|
T Consensus 858 epd~~~RaSS~a~lg~Lcq~~a~-------~vsd~~~ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 858 EPDHEFRASSLANLGQLCQLLAF-------QVSDFFHEVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred CchHHHHHhHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 99888899999999999987652 223478888888877665 6888999999999999999999876555
No 108
>KOG4413|consensus
Probab=96.86 E-value=0.32 Score=56.18 Aligned_cols=349 Identities=18% Similarity=0.220 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCc-cccccccccccCCcchhhhhHH
Q psy14676 875 TYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE-ITPHIQSIGRHTDLTSVADLKQ 953 (1827)
Q Consensus 875 ~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~-i~p~l~~i~~~~~~s~~~~L~~ 953 (1827)
..++++..|.+.... ....++++|-+-.++-.++..|+-.++..++.+++.|+.. +...+- +. -..+.+
T Consensus 62 lcVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseill-vv-------Naeilk 131 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILL-VV-------NAEILK 131 (524)
T ss_pred hHHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHH-Hh-------hhhHHH
Confidence 378888888876332 2335678888888999899999999999999988888742 221110 00 023445
Q ss_pred HHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhH-----------HHH
Q psy14676 954 VILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNV-----------VAE 1022 (1827)
Q Consensus 954 ~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~-----------a~e 1022 (1827)
+++.....++.++-.++..++.++ ..+|..++.+|..---+....|+. +.+
T Consensus 132 lildcIggeddeVAkAAiesikri------------------alfpaaleaiFeSellDdlhlrnlaakcndiaRvRVle 193 (524)
T KOG4413|consen 132 LILDCIGGEDDEVAKAAIESIKRI------------------ALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLE 193 (524)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHH------------------HhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHH
Confidence 555555555555544444332221 112333333332211111222322 234
Q ss_pred HHhhhcccCC--------CCchHHHHHHhccC-ChhhHHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHH
Q psy14676 1023 CLGKLTLIDP--------SNLLPRLQESLKSN-SALMRTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092 (1827)
Q Consensus 1023 ~Lg~L~~~~~--------~~llP~L~~~L~s~-~~~~R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~ 1092 (1827)
.+-++..+.| ..++..+..-+++. +.-++..++-+.. .+..+.+..|.+. ++ +..++-.|+.
T Consensus 194 LIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ---eg-----lIdlicnIIs 265 (524)
T KOG4413|consen 194 LIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ---EG-----LIDLICNIIS 265 (524)
T ss_pred HHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch---hh-----HHHHHHHHhh
Confidence 4444444433 23677777777774 4567777777777 4445545444443 12 3334444444
Q ss_pred hh-cCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-h-hh
Q psy14676 1093 SV-GDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNL-G-DY 1169 (1827)
Q Consensus 1093 ~l-~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~-g-~~ 1169 (1827)
+. .|++.+.|. +--++.+.....-.+ ...+..-..+..-++..++.+..+| +...++|+.++|.+-+++ | +.
T Consensus 266 GadsdPfekfra--lmgfgkffgkeaimd-vseeaicealiiaidgsfEmiEmnD--pdaieaAiDalGilGSnteGadl 340 (524)
T KOG4413|consen 266 GADSDPFEKFRA--LMGFGKFFGKEAIMD-VSEEAICEALIIAIDGSFEMIEMND--PDAIEAAIDALGILGSNTEGADL 340 (524)
T ss_pred CCCCCcHHHHHH--HHHHHHHhcchHHhh-cCHHHHHHHHHHHHHhhHHhhhcCC--chHHHHHHHHHHhccCCcchhHH
Confidence 33 466666653 222222221100000 0000000111122233444555444 456899999999998877 3 23
Q ss_pred hhhhhhhhHHHHHHhhhhhhh---HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHh
Q psy14676 1170 LKSELPVCLPILLDRLRNEIT---RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 1246 (1827)
Q Consensus 1170 l~~~l~~lL~~Ll~~L~~e~t---R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~ 1246 (1827)
+...-++....++.+..+.+. ...++++++.|+..... . -++.+. .|.+..+|-.-+.++.
T Consensus 341 llkTgppaaehllarafdqnahakqeaaihaLaaIagelrl---k--peqitD------gkaeerlrclifdaaa----- 404 (524)
T KOG4413|consen 341 LLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRL---K--PEQITD------GKAEERLRCLIFDAAA----- 404 (524)
T ss_pred HhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccC---C--hhhccc------cHHHHHHHHHHHHHHh-----
Confidence 333444455666666543332 67889999998864210 0 011111 1233334444444442
Q ss_pred CCCCcChH-hHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH
Q psy14676 1247 YPSAISTE-MLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK 1287 (1827)
Q Consensus 1247 ~~~~l~~~-~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~ 1287 (1827)
.+.+++|. .. ..+++.....++-.++..++.++.
T Consensus 405 qstkldPleLF-------lgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 405 QSTKLDPLELF-------LGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred hccCCChHHHH-------HHHHcCCChhhHHHHHHHHHHHHc
Confidence 23446652 22 233445566777777887777653
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.78 E-value=0.0052 Score=59.42 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=63.9
Q ss_pred hHHHHHhh-hcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchH
Q psy14676 1432 LPRLQESL-KSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE 1510 (1827)
Q Consensus 1432 lP~L~~~l-~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~ 1510 (1827)
+|.|.+.+ +++++.+|..++.++...-. ..++|.+..+++|+++.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------------------------------~~~~~~L~~~l~d~~~~ 46 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------------------------------PEAIPALIELLKDEDPM 46 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------------------------------HHHHHHHHHHHTSSSHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------------------------------HhHHHHHHHHHcCCCHH
Confidence 47788888 78899999888877773321 13568999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHH
Q psy14676 1511 VQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVY 1565 (1827)
Q Consensus 1511 Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l 1565 (1827)
||..|+.+||.+. ....+..+...+.++++. .||+.|..+|
T Consensus 47 vr~~a~~aL~~i~-------~~~~~~~L~~~l~~~~~~-------~vr~~a~~aL 87 (88)
T PF13646_consen 47 VRRAAARALGRIG-------DPEAIPALIKLLQDDDDE-------VVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHCCH-------HHHTHHHHHHHHTC-SSH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------CHHHHHHHHHHHcCCCcH-------HHHHHHHhhc
Confidence 9999999999984 234555555555555443 7899988876
No 110
>KOG0946|consensus
Probab=96.74 E-value=3.4 Score=53.66 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhh---hhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 437 SWKVRRAAAKCLEAIIATRRDLIG---DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 437 ~w~vr~~a~~~l~~l~~~~~~~f~---~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
.+.||..+++.+..+..+.|.-+. -.++.-++.++..+.|..+-||-+++--+.+|.+..+
T Consensus 135 DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 135 DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 477999999999999998883333 2345667888999999999999999998888886543
No 111
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.72 E-value=0.049 Score=65.76 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=125.9
Q ss_pred ccCChhhHHHHHHHHH-HHHHhc-cccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCC
Q psy14676 1044 KSNSALMRTTHQSNQT-FNVIIQ-RNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTS 1121 (1827)
Q Consensus 1044 ~s~~~~~R~~a~~~L~-~l~~~~-~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~ 1121 (1827)
...+.+.|+.++..+. .+..+. .+.+..+ ..+|+..+.++++-...+-+..|+++++-++-.+.+
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~----------~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~--- 119 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDR----------RETLLDALLKSLKKGKSEEQALAARALALLALTLGA--- 119 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHH----------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC---
Confidence 4455789999999888 443332 2333333 778999999999766656667788888887755532
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHh--hh--h--------
Q psy14676 1122 PSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS--ELPVCLPILLDR--LR--N-------- 1187 (1827)
Q Consensus 1122 ~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~--~l~~lL~~Ll~~--L~--~-------- 1187 (1827)
+.+-...+..+.+.+...+.+......+|..++.|||.+....+..... ..-.++..+... .+ .
T Consensus 120 --g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 120 --GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred --CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 2333455667777776766655456678889999999987766543222 122444422221 11 1
Q ss_pred --hhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHh
Q psy14676 1188 --EITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 1246 (1827)
Q Consensus 1188 --e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~ 1246 (1827)
.....+|+.+++-++.......+...+...++.|..+|...+..+|.++-++|..+...
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 12378899999988864433234556677899999999999999999999999877653
No 112
>KOG0168|consensus
Probab=96.68 E-value=1.7 Score=56.62 Aligned_cols=192 Identities=13% Similarity=0.156 Sum_probs=115.2
Q ss_pred hHHHHHHhccC-ChhhHHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc-hhhHHHHHHHHHHH
Q psy14676 1036 LPRLQESLKSN-SALMRTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF-YKITAEALLVLQQF 1112 (1827)
Q Consensus 1036 lP~L~~~L~s~-~~~~R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~-~~V~~eAl~~l~~l 1112 (1827)
+-.|++.++.. +......++.-|+ -+.....+.+..+ -+..++|.+++.++++. +.+.--|++++..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~f---------pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl 239 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGF---------PVKSLVPVLVALLSHEHNFDIMLLACRALTYL 239 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccc---------cHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 33455555444 6666777777676 3333333333332 27789999999998654 88999999999999
Q ss_pred HHHhccCCCCCCCCcchhHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh-hhh-hhhhhHHHHHHhhhhhh
Q psy14676 1113 VKVIRPLTSPSSYDFAPFTS-DIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDY-LKS-ELPVCLPILLDRLRNEI 1189 (1827)
Q Consensus 1113 v~~l~~~~~~~~~~~~~~l~-~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~-l~~-~l~~lL~~Ll~~L~~e~ 1189 (1827)
..++-+- . .+ .++ ..+++++.+|. .=..-.|-|.++.|+..|-..-+.. |+. .+..+|. +++.+.-..
T Consensus 240 ~evlP~S--~---a~--vV~~~aIPvl~~kL~-~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Ls-ylDFFSi~a 310 (1051)
T KOG0168|consen 240 CEVLPRS--S---AI--VVDEHAIPVLLEKLL-TIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLS-YLDFFSIHA 310 (1051)
T ss_pred Hhhccch--h---he--eecccchHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHH-HHHHHHHHH
Confidence 9887431 0 00 011 13455556665 1224568899999998887766542 221 2222222 122222222
Q ss_pred hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhC
Q psy14676 1190 TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNY 1247 (1827)
Q Consensus 1190 tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~ 1247 (1827)
.| .|+-....++.+-...++. ++-+.+|.|..+|...++..-..+.-|+..++..+
T Consensus 311 QR-~AlaiaaN~Cksi~sd~f~-~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 311 QR-VALAIAANCCKSIRSDEFH-FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HH-HHHHHHHHHHhcCCCccch-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 23 3444445555554444444 77789999999998877777777777888877754
No 113
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.66 E-value=0.007 Score=61.90 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
|++|..++.+|..++...++....+.+ .++|.+.+.+.+.++.+|..++.+++.++....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~------------------- 81 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE------------------- 81 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-------------------
Confidence 899999999999999876655555555 889999999999999999999999999974210
Q ss_pred HhhHHhhh-HHHHHHHHHHhccCCHhHHHHHHHHHHHHH
Q psy14676 337 LCLLSTQV-PSLVKALQCQLREKSIRTRQDCLALLRELV 374 (1827)
Q Consensus 337 ~~~l~~~l-p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~ 374 (1827)
....... ..+++.+.+.+.+++.++|..+..++..++
T Consensus 82 -~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 -DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1111111 236788888888899999998888887765
No 114
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.64 E-value=0.35 Score=59.87 Aligned_cols=188 Identities=12% Similarity=0.183 Sum_probs=99.5
Q ss_pred CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHH
Q psy14676 191 PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEA 270 (1827)
Q Consensus 191 p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~ 270 (1827)
|+.+..++...+..+.+++.+++- ..+ ++ | +|+...-|+++.++...+..
T Consensus 73 Pe~fed~l~~wm~~f~~~L~~~~p-~l~-~~--------------------d--------~~e~~~l~kvK~~i~~~~~l 122 (370)
T PF08506_consen 73 PEFFEDNLSEWMEIFHKYLTYPNP-ALE-ED--------------------D--------DDEPGLLEKVKAWICENLNL 122 (370)
T ss_dssp -HHHHHTHHHHHHHHHHHHH--SG-GG--TT-----------------------------SSS--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCc-ccC-CC--------------------C--------cccccHHHHHHHHHHHHHHH
Confidence 666666788889999999988521 111 00 0 01122458999999999999
Q ss_pred HHHHcCCchhhhHHhhhHHHHhhcC----C-CCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhH
Q psy14676 271 IIATRRDLIGDMYRLVSPPLIARFK----E-REENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVP 345 (1827)
Q Consensus 271 l~~~~~~~l~~~~~~v~p~L~~~l~----e-~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp 345 (1827)
.+..+.+.+.++.+..+....+.+. + +...+-..++.-++.+++....... +. . ...+...+.
T Consensus 123 y~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~l--f~---------~-~~~L~~Iie 190 (370)
T PF08506_consen 123 YAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNL--FE---------N-KPHLQQIIE 190 (370)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTT--T----------S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHH--hC---------C-HHHHHHHHH
Confidence 9888888777777776666555542 1 2223334455555555432211100 00 0 111222222
Q ss_pred HH-H------------------HHHHHHhccCC-HhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCC
Q psy14676 346 SL-V------------------KALQCQLREKS-IRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 346 ~I-v------------------~~l~~~L~d~~-~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
.| + ..+-+.+...+ ...|.+|..++..|+...+.... +.+...+...+++.
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~---~i~~~~i~~~l~~y------ 261 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVT---SILMQYIQQLLQQY------ 261 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH------
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH------
Confidence 11 1 23333332222 34667999999999988765433 22223344444321
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIAT 454 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~ 454 (1827)
..+...+||-+.+|+..++.++..
T Consensus 262 -------------------------~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 262 -------------------------ASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp -------------------------HH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred -------------------------hhCCcccHHHHHHHHHHHHHHHhh
Confidence 001224799999999999999843
No 115
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.63 E-value=0.35 Score=58.50 Aligned_cols=202 Identities=18% Similarity=0.172 Sum_probs=133.9
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhh-chhH----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--hhh
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSC-NLQL----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG--HRF 153 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~-~~~~----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~--~~~ 153 (1827)
|.-.+..+.+.+...|..|..++..+...- ..+. ...+++.++..+++... ..+..++.+++-++-+.| ..-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccH
Confidence 445566677788999999999888877532 2222 34456777777766543 567788899999999865 555
Q ss_pred HHhHHHHHHHHHhhcccCc--hHHHHHHHHHHHHHHHhCCCccccch--HHHHHHHHH--HhccCCCCCcccccccCCCC
Q psy14676 154 AEHIERVMPLILKYSREED--DELREFCLQACEAFVQRCPKEITPHI--QSITELCLT--YITYDPNYNYEDEEEGLGGE 227 (1827)
Q Consensus 154 ~p~l~~i~p~l~~~~~~~~--delRe~al~ale~~~~~~p~e~~p~l--~~ii~~ll~--~l~~dpn~~~~ddd~~~~~~ 227 (1827)
...+..+.|.+.+.+.+.. ..+|..|+.||....-.+..+...+. -..+..++. +.+-|.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~------------ 191 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNA------------ 191 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCc------------
Confidence 6678889999999887643 46788888888666555554432221 122332211 11111000
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCC-chhhhHHhhhHHHHhhcCCCCHhHHHHHH
Q psy14676 228 GGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRD-LIGDMYRLVSPPLIARFKEREENVKSDIF 306 (1827)
Q Consensus 228 ~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~-~l~~~~~~v~p~L~~~l~e~ee~VR~aa~ 306 (1827)
..... . .+-.+..+|..+.+-++...+. .+..+++..+|.|...+...+-+||.+|-
T Consensus 192 ---~~~~~---------------~----~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAG 249 (309)
T PF05004_consen 192 ---PVVAA---------------E----DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAG 249 (309)
T ss_pred ---ccccC---------------C----CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 00000 0 0115778888888888888775 35577888999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy14676 307 HAYMALLKGTR 317 (1827)
Q Consensus 307 ~al~~ll~~~~ 317 (1827)
.+++.+.+..+
T Consensus 250 EaiAll~E~~~ 260 (309)
T PF05004_consen 250 EAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHhh
Confidence 99988876543
No 116
>KOG2062|consensus
Probab=96.56 E-value=0.17 Score=64.23 Aligned_cols=264 Identities=17% Similarity=0.104 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc-hhH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN-LQL 114 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~-~~~ 114 (1827)
+.++-.|.+.+.+.++..+|.++|--||-. . +++...++.+.+-..|..+++..-++|..++|.+.-... .+.
T Consensus 412 ~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa--~----mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ea 485 (929)
T KOG2062|consen 412 RGITDYLLQQLKTAENEVVRHGACLGLGLA--G----MGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEA 485 (929)
T ss_pred ccHHHHHHHHHHhccchhhhhhhhhhccch--h----cccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHH
Confidence 557788888887766788888887666532 2 334556788888888998888888999999998876543 333
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcc
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEI 194 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~ 194 (1827)
+.. |+.--.+.+...+.|..--.++-+.-...+.+.+ ++.+.+.+.|+-+|-....++ ....|+..-
T Consensus 486 ied----m~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~-------lI~el~~dkdpilR~~Gm~t~--alAy~GTgn 552 (929)
T KOG2062|consen 486 IED----MLTYAQETQHEKIIRGLAVGIALVVYGRQEDADP-------LIKELLRDKDPILRYGGMYTL--ALAYVGTGN 552 (929)
T ss_pred HHH----HHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHH-------HHHHHhcCCchhhhhhhHHHH--HHHHhccCc
Confidence 333 3332222233445555544444443333334443 444555677787885443332 223343321
Q ss_pred ccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHH
Q psy14676 195 TPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIAT 274 (1827)
Q Consensus 195 ~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~ 274 (1827)
..+|..++.+...|+| | .|||+|.-+|+-+...
T Consensus 553 ----nkair~lLh~aVsD~n---------------------------------------D----DVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 553 ----NKAIRRLLHVAVSDVN---------------------------------------D----DVRRAAVIALGFVLFR 585 (929)
T ss_pred ----hhhHHHhhcccccccc---------------------------------------h----HHHHHHHHHheeeEec
Confidence 2244455543322221 0 3999999999877655
Q ss_pred cCCchhhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 275 RRDLIGDMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 275 ~~~~l~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
-|+ .+|..++.+ .+.++.||..+..|+|-.+..+|. ..-+..+-.
T Consensus 586 dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------------------------~eAi~lLep 631 (929)
T KOG2062|consen 586 DPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------------------------KEAINLLEP 631 (929)
T ss_pred Chh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------------------------HHHHHHHhh
Confidence 443 234444444 345799999999999988754431 111223333
Q ss_pred HhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhh
Q psy14676 354 QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWD 399 (1827)
Q Consensus 354 ~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~ 399 (1827)
+.+|+..=|||+++-.+.-+.-..-..+.+....+...+.++..++
T Consensus 632 l~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 632 LTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 4458888899977766655554444444455555555555555443
No 117
>KOG2025|consensus
Probab=96.54 E-value=0.019 Score=72.19 Aligned_cols=168 Identities=19% Similarity=0.171 Sum_probs=111.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1433 PRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1433 P~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
-++.....+++-.+|--+++-|..+... ...+|+.+ .+.+...++.-+.|.+|+||
T Consensus 88 ~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~v-----------------------fn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 88 YHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDV-----------------------FNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHH-----------------------HHHHHHHHHHHHhccCchHH
Confidence 3444445577888888888888877642 23455443 35677777888899999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcccCC
Q psy14676 1513 NLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHP 1592 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~ll 1592 (1827)
..|..||.++-.. +.+.=-++++.+...+.+|++ .+|||+|+..+.--. .-+
T Consensus 144 iqAv~aLsrlQ~d-~~dee~~v~n~l~~liqnDpS-------~EVRRaaLsnI~vdn--------------------sTl 195 (892)
T KOG2025|consen 144 IQAVLALSRLQGD-PKDEECPVVNLLKDLIQNDPS-------DEVRRAALSNISVDN--------------------STL 195 (892)
T ss_pred HHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCCc-------HHHHHHHHHhhccCc--------------------ccc
Confidence 9999999998742 222223555666666666644 499999988663221 234
Q ss_pred cccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCChHHHHHHHHhhccc-hhhHH
Q psy14676 1593 PAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRD-HYDIK 1671 (1827)
Q Consensus 1593 p~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~~~~~~~~~~~gl~d-~~dik 1671 (1827)
|.+. ..+ | |=..-.||.+|+-+.-=++-|...++ .+.-.+..||+| +.++|
T Consensus 196 p~Iv--------eRa--r----------------DV~~anRrlvY~r~lpkid~r~lsi~--krv~LlewgLnDRe~sVk 247 (892)
T KOG2025|consen 196 PCIV--------ERA--R----------------DVSGANRRLVYERCLPKIDLRSLSID--KRVLLLEWGLNDREFSVK 247 (892)
T ss_pred hhHH--------HHh--h----------------hhhHHHHHHHHHHhhhhhhhhhhhHH--HHHHHHHHhhhhhhhHHH
Confidence 5555 222 1 44567899999855444455554444 666678899999 77888
Q ss_pred HHHHHHHHH
Q psy14676 1672 MLTYLMLAR 1680 (1827)
Q Consensus 1672 ~l~~~~l~~ 1680 (1827)
.-|--++..
T Consensus 248 ~A~~d~il~ 256 (892)
T KOG2025|consen 248 GALVDAILS 256 (892)
T ss_pred HHHHHHHHH
Confidence 877666543
No 118
>KOG1058|consensus
Probab=96.54 E-value=1.3 Score=56.80 Aligned_cols=332 Identities=14% Similarity=0.083 Sum_probs=180.7
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccc-cccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRN-DIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~-~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
++-.++-.+-+.+-..|.--+-.|..+....++ .+.+ .+--+-..+.+-++.++.-||...++.+..+=
T Consensus 58 lm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~----------EMILvcna~RkDLQHPNEyiRG~TLRFLckLk 127 (948)
T KOG1058|consen 58 LMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLH----------EMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK 127 (948)
T ss_pred HHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHH----------HHHHHHHHHhhhccCchHhhcchhhhhhhhcC
Confidence 444444445555555555544444444333331 1111 14444455555566666667766655443321
Q ss_pred HHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh---
Q psy14676 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--- 1190 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--- 1190 (1827)
=...+++++|.+...|. ....-||+.|+-|++.+-.+ ++.+-|+-|.++..++.+=.+.+-
T Consensus 128 -------------E~ELlepl~p~Iracle--HrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRN 191 (948)
T KOG1058|consen 128 -------------EPELLEPLMPSIRACLE--HRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRN 191 (948)
T ss_pred -------------cHHHhhhhHHHHHHHHh--CcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHH
Confidence 11457888898888887 77888999999999999887 456667778877777665433332
Q ss_pred ---------HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHH
Q psy14676 1191 ---------RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTV 1261 (1827)
Q Consensus 1191 ---------R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~ 1261 (1827)
+..|+.-++..... -.++.+.++-++-++....+..+.+.|.-=++++..++.+.++.. +..
T Consensus 192 AFi~L~~~D~ErAl~Yl~~~idq--i~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV-------~fE 262 (948)
T KOG1058|consen 192 AFLMLFTTDPERALNYLLSNIDQ--IPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAV-------IFE 262 (948)
T ss_pred HHHHHHhcCHHHHHHHHHhhHhh--ccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchh-------hhh
Confidence 23333333322211 112334444444444443334456666666788888887654331 111
Q ss_pred HhhhhcC-CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHH-HHH
Q psy14676 1262 ELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAA-SYT 1339 (1827)
Q Consensus 1262 ~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aA-a~a 1339 (1827)
.-..+.+ .+|+....++..++..++...++.-+.--+..-+.++... ...-...+.--++..+.+++-+||.-+ ..+
T Consensus 263 aa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~-~~~il~~l~mDvLrvLss~dldvr~Ktldi~ 341 (948)
T KOG1058|consen 263 AAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKAL-HEKILQGLIMDVLRVLSSPDLDVRSKTLDIA 341 (948)
T ss_pred hcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhh-hHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 1122222 4566777777777777666544322100000111222100 001124566678888899999999887 466
Q ss_pred HhhhhhhhhhhhHHHHHHhhhc------CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCch
Q psy14676 1340 LGSIAVGNLQQYVPFVLKEIEN------QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEE 1410 (1827)
Q Consensus 1340 LG~i~~~~l~~~LP~Il~~i~~------~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e 1410 (1827)
|+-+..-|+...+-++-+.+.+ ....+|+ +.|.+.|...+ ..+..+...+.+.|++.+.+.++
T Consensus 342 ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yR--qlLiktih~ca------v~Fp~~aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 342 LDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYR--QLLIKTIHACA------VKFPEVAATVVSLLLDFISDSNE 410 (948)
T ss_pred HhhhhhccHHHHHHHHHHHHHhccccccccchHHH--HHHHHHHHHHh------hcChHHHHHHHHHHHHHhccCCH
Confidence 7777777777777666655432 1123333 33333333211 23445777888888888766543
No 119
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.49 E-value=0.2 Score=60.52 Aligned_cols=130 Identities=18% Similarity=0.280 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhccCCCCchh--HHHHHHH-hhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHH
Q psy14676 57 EALDILSDLLSRFGALLPSFH--FVILTAL-LPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTS 133 (1827)
Q Consensus 57 ~al~iL~~l~~~~~~~l~~~~--~~il~~l-l~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~ 133 (1827)
.+|.+...++++....+.+.. ..+++.+ .|.++++++.||+.|+.|+|.++-.-. +.-.+.+.-+...+.+ ++..
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~-~~~~ 79 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQK-DDEE 79 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHh-CCHH
Confidence 368888999999875565532 3666555 599999999999999999999988654 4445567777777744 4788
Q ss_pred HHHHHHHHHHHHHHHhchhhHH-hH--------HHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 134 TNRTYIQCFAAICRQAGHRFAE-HI--------ERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 134 ~r~~ai~~l~~la~~~~~~~~p-~l--------~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
++..+++++..+.-..|..+.. .- ..+..++.+++..+++++|..|.+++..+.-
T Consensus 80 v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 80 VKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999888744322 22 3588888888888899999777766655443
No 120
>KOG0413|consensus
Probab=96.49 E-value=5.2 Score=52.73 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHhhccCC---CcchHHHHHhhh-cCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhccc
Q psy14676 1411 GTRNVVAECLGKLTLIDP---SNLLPRLQESLK-SNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSI 1486 (1827)
Q Consensus 1411 ~vR~~aAecLGkL~~~~p---~~~lP~L~~~l~-~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~ 1486 (1827)
-+|.++-.+||++++.+. ..++|.|.+-|. +....+|..++-|+.-+.++= .
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----T-------------------- 1001 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----T-------------------- 1001 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----H--------------------
Confidence 478889999999999885 469999988886 445566666555444333210 0
Q ss_pred ccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhh----hhhhHHHHHHHHHhhhcccccccccCCccchhHHHH
Q psy14676 1487 KLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKV----KEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS 1562 (1827)
Q Consensus 1487 ~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l----~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al 1562 (1827)
--.+..+|.+-..|.||.+.||..++--|..|.+.= .++-.-+.+..++. . +.++|+.|-
T Consensus 1002 ----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D----~--------~edIr~~a~ 1065 (1529)
T KOG0413|consen 1002 ----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLD----A--------NEDIRNDAK 1065 (1529)
T ss_pred ----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcc----c--------CHHHHHHHH
Confidence 023567899999999999999999999999998641 23344445554443 2 239999999
Q ss_pred HHHhhhhccC
Q psy14676 1563 VVYCLGDRNS 1572 (1827)
Q Consensus 1563 ~~l~s~a~~~ 1572 (1827)
--|..+...+
T Consensus 1066 f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1066 FYISEVLQSE 1075 (1529)
T ss_pred HHHHHHHhhc
Confidence 8888877654
No 121
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.44 E-value=0.013 Score=59.86 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=82.2
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc---hhHHH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCN---LQLYT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~---~~~~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
+++.+++.|.++++.+|..|+.+++.++...+ ..... ..++.++..|.. +++.+++.++.+++.++...+.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 67778888899899999999999999997632 22233 456666666654 46899999999999999876544333
Q ss_pred hH-HHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q psy14676 156 HI-ERVMPLILKYSREEDDELREFCLQACEAFV 187 (1827)
Q Consensus 156 ~l-~~i~p~l~~~~~~~~delRe~al~ale~~~ 187 (1827)
+. .++++.+.+.+++.+.++|+.++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 358999999998888999999988876654
No 122
>KOG1822|consensus
Probab=96.29 E-value=10 Score=54.06 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=114.2
Q ss_pred HHHHHHHHhhccC-CCCc--hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHhccCCCCHHH
Q psy14676 59 LDILSDLLSRFGA-LLPS--FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY-TKLIDFLLEGLTTNKSTST 134 (1827)
Q Consensus 59 l~iL~~l~~~~~~-~l~~--~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~-~~l~~~ll~~L~~~~~~~~ 134 (1827)
+.+|..+.+.-+. .+++ +...-...++..|..+++..|=++..|++.++...++..| ..+.+..+..|++..++-.
T Consensus 853 ~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~ 932 (2067)
T KOG1822|consen 853 LSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPIT 932 (2067)
T ss_pred HHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHH
Confidence 3345555555443 3333 2334455566778889999999999999999999887654 5677888889988777778
Q ss_pred HHHHHHHHHHHHHHhchhh-HHhHHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccC
Q psy14676 135 NRTYIQCFAAICRQAGHRF-AEHIERVMPLILKYSREEDD-ELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYD 212 (1827)
Q Consensus 135 r~~ai~~l~~la~~~~~~~-~p~l~~i~p~l~~~~~~~~d-elRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~d 212 (1827)
|....-++|.+-+..+.-. +.|+..-+..++...+|..+ .|+..++.|+.-.+..-+..+.-|+...+..|+..+..+
T Consensus 933 R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~ 1012 (2067)
T KOG1822|consen 933 RTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSV 1012 (2067)
T ss_pred HHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCC
Confidence 8888999999999887543 45777767777777777644 899999888877776655666777777788888777665
Q ss_pred CC
Q psy14676 213 PN 214 (1827)
Q Consensus 213 pn 214 (1827)
|.
T Consensus 1013 p~ 1014 (2067)
T KOG1822|consen 1013 PT 1014 (2067)
T ss_pred Cc
Confidence 53
No 123
>KOG1993|consensus
Probab=96.28 E-value=2.8 Score=54.36 Aligned_cols=298 Identities=14% Similarity=0.178 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHh----cCC-------CHHH-HHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC--C-CHHHHHHH
Q psy14676 35 CRRITGKLSTAIE----KQE-------DVSV-QLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS--P-RQAVRKRT 99 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~----~~~-------~~~v-~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~--~-~~~VRk~A 99 (1827)
...++|.+++.+. ..+ +.-+ ++++..+.|.-...+-..+ ++..=+.+.+++-|+. + ...+|+|-
T Consensus 429 sqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~-dF~~Wl~~~llpEl~~~~~~~RiiRRRV 507 (978)
T KOG1993|consen 429 SQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL-DFDKWLQEALLPELANDHGNSRIIRRRV 507 (978)
T ss_pred HHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHhhCHHhhhcccchhHHHHHH
Confidence 4556777766552 110 1222 3444455565555555544 3545566677777763 2 35789999
Q ss_pred HHHHHHHHHh-hchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH---hchhhHHhHHHHHHHHHhhccc-CchH
Q psy14676 100 IVALSHLVMS-CNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ---AGHRFAEHIERVMPLILKYSRE-EDDE 174 (1827)
Q Consensus 100 i~aL~~l~~~-~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~---~~~~~~p~l~~i~p~l~~~~~~-~~de 174 (1827)
+--+|+.+.. ++.+.-..+...+++-|...++..+|-++++++..+.+- .++.|.||++.+.-.+++.+.. ..-+
T Consensus 508 a~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~D 587 (978)
T KOG1993|consen 508 AWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECD 587 (978)
T ss_pred HHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 9999999884 333333444566666666666777899999999888764 4688999999998888887653 3445
Q ss_pred HHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCc
Q psy14676 175 LREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 254 (1827)
Q Consensus 175 lRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sddd 254 (1827)
.|-+-+..+..++.+.++-++||...++..+-.. |. +.+ + +
T Consensus 588 tk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~L--------------We---------~s~---------~-------e 628 (978)
T KOG1993|consen 588 TKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLL--------------WE---------ESE---------E-------E 628 (978)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------Hh---------hhc---------c-------C
Confidence 5667778888888888888888877766655432 10 000 0 0
Q ss_pred cchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCH---hHHHHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q psy14676 255 DMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREE---NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMD 331 (1827)
Q Consensus 255 D~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee---~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~ 331 (1827)
+ -.|-+-..+|..++.+.+..-.++|+.+.|.+.-..+-..+ ..-.++++-|+..+...
T Consensus 629 ~---lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~--------------- 690 (978)
T KOG1993|consen 629 P---LLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS--------------- 690 (978)
T ss_pred c---HHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc---------------
Confidence 0 36666777888899888866667888888887765532222 34677888888777322
Q ss_pred CCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC-cccccCchhhHHHHHHHHhh
Q psy14676 332 QEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTL-PGCLAPSLPALIPDVTSVAE 397 (1827)
Q Consensus 332 ~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl-~~~l~~~l~~Llp~i~~~L~ 397 (1827)
+.+.+.+-.++|.+...+.- +.+.-..++.++..-.-.. +..+..|...+...+...+.
T Consensus 691 ------~~l~p~ll~L~p~l~~~iE~-ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 691 ------QKLTPELLLLFPHLLYIIEQ-STENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred ------cccCHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 12233333444444444322 2223334444444333222 23445666677766666663
No 124
>KOG0392|consensus
Probab=96.25 E-value=0.083 Score=70.46 Aligned_cols=194 Identities=19% Similarity=0.158 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHH
Q psy14676 362 TRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 441 (1827)
Q Consensus 362 vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr 441 (1827)
.|.+|--+|..++..+++.+...+|.+-..+...|.+. . | .+ |...
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~-------~-----------~-------~~----d~~~----- 794 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGL-------I-----------D-------GN----DEFL----- 794 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhcc-------C-----------C-------CC----cchh-----
Confidence 47899999999999999999888888888888877421 0 0 00 0111
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhh
Q psy14676 442 RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLS 521 (1827)
Q Consensus 442 ~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r 521 (1827)
...+.+-.++-..+..|.| +-.+.|.++.+.+..+..+|..++++++.+.+....
T Consensus 795 -~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~----------------------- 849 (1549)
T KOG0392|consen 795 -SSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATR----------------------- 849 (1549)
T ss_pred -hhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 1123333333334455666 556788999999999999999999998888654220
Q ss_pred chhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchh
Q psy14676 522 TQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNG 601 (1827)
Q Consensus 522 ~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~ 601 (1827)
.+...++..+...+++.+.=.|.-+...++-.+..........+..-+++.|++++.|...
T Consensus 850 -------------------e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d 910 (1549)
T KOG0392|consen 850 -------------------ETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQID 910 (1549)
T ss_pred -------------------HHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchH
Confidence 0111222223333333333333333333333333323333445667788999999999999
Q ss_pred hHHHHHHHhhhhHHHHhhhhhcCccccccccc
Q psy14676 602 EVQNLAVKCLGPLFKALTKIAASPLRIDLRPI 633 (1827)
Q Consensus 602 eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~ 633 (1827)
.||+.|.++...+++.++.-++.+=..++++.
T Consensus 911 ~vR~aat~~fa~lip~~~le~g~~~p~gls~e 942 (1549)
T KOG0392|consen 911 SVREAATKVFAKLIPLLPLEAGIPDPTGLSKE 942 (1549)
T ss_pred HHHHHHHHHHHHHhcccccccCCCCCccccHH
Confidence 99999999999999888875554333344333
No 125
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.22 E-value=0.89 Score=57.53 Aligned_cols=224 Identities=14% Similarity=0.217 Sum_probs=119.1
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcc-----cchHHHHHHHHHHHHHHhhC
Q psy14676 854 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE-----EDDELREFCLQACEAFVQRC 928 (1827)
Q Consensus 854 ~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d-----~~~~vre~al~Ale~~v~~~ 928 (1827)
..++..+...+..+.+ ...+..+.|+-.+....++.+.||...+++.+...+.. .++..--...++++.++.++
T Consensus 25 ~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 3444444444443222 56788889999999999999999999999998877753 45555666667766666543
Q ss_pred CCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhh
Q psy14676 929 PKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLH 1008 (1827)
Q Consensus 929 ~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~ 1008 (1827)
...-...+. .+.+.++.-|. .. ......++.|-.
T Consensus 104 ~~~~~~~v~------------~~E~~L~P~f~------------------~I---------Lq~dV~EF~PYv------- 137 (435)
T PF03378_consen 104 CEADPEAVS------------QFEEALFPPFQ------------------EI---------LQQDVQEFIPYV------- 137 (435)
T ss_dssp -GGGHH---------------HHHHHHHHHHH------------------HH---------HHTT-TTTHHHH-------
T ss_pred cCCChhHHH------------HHHHHHHHHHH------------------HH---------HHHHHHHHHHHH-------
Confidence 221000010 11111111110 00 001122333322
Q ss_pred hhccccchhhHHHHHHhhhcccC-----C---CCchHHHHHHhccCChhhHHHHHHHHHHHHHhcccccc--ccccchhh
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLID-----P---SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIH--NHNEETSF 1078 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~~-----~---~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~--~~~~~~~~ 1078 (1827)
++.|+.+.... | ..++|.+..-.-......=-+...+|.++..+.+..+. ++
T Consensus 138 ------------fQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~------ 199 (435)
T PF03378_consen 138 ------------FQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQ------ 199 (435)
T ss_dssp ------------HHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-------
T ss_pred ------------HHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhh------
Confidence 22222222222 1 22444444222111111113455577766666666553 45
Q ss_pred hhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHH
Q psy14676 1079 IYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKER 1154 (1827)
Q Consensus 1079 ~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~ 1154 (1827)
+..++..+.+++..+... ..|+..++.++..+.+ ..+.+|+..++..++.||+.+-++.-+|..
T Consensus 200 ----l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~------~~l~~yl~~I~~lll~RLq~skT~kf~~~f 263 (435)
T PF03378_consen 200 ----LEPILGVFQKLIASKAND--HYGFDLLESIVENLPP------EALEPYLKQIFTLLLTRLQSSKTEKFVKRF 263 (435)
T ss_dssp ----CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-H------HHHGGGHHHHHHHHHHHHHHC--HHHHHHH
T ss_pred ----HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHhhCCcHHHHHHH
Confidence 778888888888765433 5688999999988753 457899999999999999955444334333
No 126
>KOG0414|consensus
Probab=96.21 E-value=8.7 Score=52.39 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred hhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHH
Q psy14676 286 VSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQD 365 (1827)
Q Consensus 286 v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a 365 (1827)
++..|.+++.+-..-||..++..|..++++.... ......++......|.|++.-||..
T Consensus 360 ~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p---------------------~~~~~eV~~la~grl~DkSslVRk~ 418 (1251)
T KOG0414|consen 360 LLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIP---------------------LGSRTEVLELAIGRLEDKSSLVRKN 418 (1251)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCC---------------------ccHHHHHHHHHhcccccccHHHHHH
Confidence 4556778888889999999999999998764321 1235567777888899999999999
Q ss_pred HHHHHHHHHHhCcc
Q psy14676 366 CLALLRELVQTLPG 379 (1827)
Q Consensus 366 ~~~ll~~L~~vl~~ 379 (1827)
+++++..+....|-
T Consensus 419 Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 419 AIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999888775
No 127
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.16 E-value=2.3 Score=56.61 Aligned_cols=357 Identities=18% Similarity=0.197 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccch-hhhhhHhhhhhhhcchh
Q psy14676 1153 ERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRP-ILTDGIPILGSFLRKNQ 1229 (1827)
Q Consensus 1153 e~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p-~~~~~l~~L~~~Lrk~~ 1229 (1827)
+.++..|..+.....-...=.-..+++.|++.|..++. ...++..+..+.-..... .. .-..+++.|..++...+
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK--~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK--DEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH--HHHHHcCCHHHHHHHhcCCC
Confidence 35566666666554332222345677888877765543 666677777665432110 11 12457888999998777
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhH-HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEML-NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRH 1308 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~-~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~ 1308 (1827)
..++..++..|..|... ..+-...+ .+++|.|..++.+.+ .+..++.+|..++.... ++.
T Consensus 345 ~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~---------------~r~ 405 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDE---------------ARS 405 (708)
T ss_pred HHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh---------------hHH
Confidence 88999999988876432 22222222 257788888888754 34556667766655221 111
Q ss_pred cCCCchhhHHHHHHHhcCC-CCHhHHHHHHHHHhhhhhh--hh-----hhhHHHHHHhhhcCchhhHHHHHHHHHHHhhc
Q psy14676 1309 TDLTSVADLKQVILNAFTP-TSEEVKSAASYTLGSIAVG--NL-----QQYVPFVLKEIENQPKRQYLLLHSLKEIISWQ 1380 (1827)
Q Consensus 1309 ~~~~~~~~l~~~~l~~~~~-~s~eVr~aAa~aLG~i~~~--~l-----~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~ 1380 (1827)
+ + ...+.+|.+.+.+.. +.+++...+...+-+++.. |. ..-||.+++..-.. +..+++..++-+-.+-
T Consensus 406 ~-f-~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~--~D~lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 406 M-F-AYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT--RDPLLLKLIRNISQHD 481 (708)
T ss_pred H-H-hhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc--ccHHHHHHHHHHHhcC
Confidence 1 0 012345555555433 4555655443333332211 10 12455565543221 2245566666665432
Q ss_pred cccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccC-C----------CcchHHHHHhhhcCCHHHHHH
Q psy14676 1381 STSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLID-P----------SNLLPRLQESLKSNSALMRTT 1449 (1827)
Q Consensus 1381 ~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~-p----------~~~lP~L~~~l~~~~~~~R~t 1449 (1827)
... ...+.+|+..|... +...+ .-..+.||||.|+... | ..++|.|.+.+..... .-..
T Consensus 482 ~~~---k~~f~~~i~~L~~~----v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~-~dDl 551 (708)
T PF05804_consen 482 GPL---KELFVDFIGDLAKI----VSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS-EDDL 551 (708)
T ss_pred chH---HHHHHHHHHHHHHH----hhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC-ChHH
Confidence 100 11233444444333 32222 2478899999999764 2 2688888888863321 1123
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCC--chHHHHHHHHHhhhhhhhhh
Q psy14676 1450 VLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK--NGEVQNLAVKCLGPLVNKVK 1527 (1827)
Q Consensus 1450 ~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~--~~~Vr~~a~~~Lg~L~~~l~ 1527 (1827)
++.++-.+-+-. .|+.-. ..+ ....+++.++.+++.. |.++...-.-++..++.+-.
T Consensus 552 ~LE~Vi~~gtla---~d~~~A--------~lL----------~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 552 LLEVVILLGTLA---SDPECA--------PLL----------AKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred HHHHHHHHHHHH---CCHHHH--------HHH----------HhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence 444443333211 122211 000 1123556666665322 34555566666666664421
Q ss_pred -hhhH---HHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCC
Q psy14676 1528 -EFQV---ETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSS 1573 (1827)
Q Consensus 1528 -~~~~---~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p 1573 (1827)
.+.+ ..++.-++.-+...|. .||+++-.+|.-++-..+
T Consensus 611 tr~~ll~~~~~~~ylidL~~d~N~--------~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 611 TREVLLKETEIPAYLIDLMHDKNA--------EIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHhccchHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHhCH
Confidence 1111 1233334443443333 999999999988775443
No 128
>KOG1078|consensus
Probab=96.14 E-value=4.2 Score=52.91 Aligned_cols=237 Identities=12% Similarity=0.055 Sum_probs=139.3
Q ss_pred hhccccchhhHHHHHHhhhcccCCCCch---HHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhh
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLIDPSNLL---PRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYF 1085 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~~~~~ll---P~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~ 1085 (1827)
|.++....|-.|.++|.+++...|..+. +.+.....+.+-. -+.-++..+...+. +.-+.-|-.
T Consensus 291 lssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~Nrs---Iat~AITtLLKTG~----------e~sv~rLm~ 357 (865)
T KOG1078|consen 291 LSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRS---IATLAITTLLKTGT----------ESSVDRLMK 357 (865)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccc---hhHHHHHHHHHhcc----------hhHHHHHHH
Confidence 4556667788889999999888765432 2344444433322 12222221111111 111122555
Q ss_pred hhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1086 Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
.++.++.-+.|+|-.|...|.+++..... .-...+...+..+..++...|-+.+.+.++..+++.
T Consensus 358 qI~~fv~disDeFKivvvdai~sLc~~fp---------------~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~ 422 (865)
T KOG1078|consen 358 QISSFVSDISDEFKIVVVDAIRSLCLKFP---------------RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE 422 (865)
T ss_pred HHHHHHHhccccceEEeHHHHHHHHhhcc---------------HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh
Confidence 66777788889988888888777666542 222333333334444566778888888888888774
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCC-ccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy14676 1166 LGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPL-RIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLL 1244 (1827)
Q Consensus 1166 ~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~-~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~ 1244 (1827)
..+ .-...|..|.+.+.+..-+.-+++-++.++.... ...=+.|+..+... +-=.+..+|.+++.||.++.
T Consensus 423 ~pd----sKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNR----viLEn~ivRaaAv~alaKfg 494 (865)
T KOG1078|consen 423 NPD----SKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNR----VILENAIVRAAAVSALAKFG 494 (865)
T ss_pred Ccc----hhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhh----hhhhhhhhHHHHHHHHHHHh
Confidence 432 2334666777777777778888888888876332 11112233322211 11134568999999998887
Q ss_pred HhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHH
Q psy14676 1245 VNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIA 1286 (1827)
Q Consensus 1245 ~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~ 1286 (1827)
.... ...+.+..-|.+-+.|.|-.+|..+--.|..+-
T Consensus 495 ~~~~-----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 495 AQDV-----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cCCC-----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3211 123345666788899999999988665555544
No 129
>KOG4413|consensus
Probab=96.14 E-value=2.2 Score=49.69 Aligned_cols=273 Identities=16% Similarity=0.144 Sum_probs=150.2
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhH
Q psy14676 1219 PILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAA 1298 (1827)
Q Consensus 1219 ~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i 1298 (1827)
|.+-++...|+|+.-.-++.+|..|.+.. .+.+....++|.|...+-..|..+..+++..++.+.+.+....
T Consensus 46 pdifgfeNenhrekttlcVscLERLfkak---egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtna----- 117 (524)
T KOG4413|consen 46 PDIFGFENENHREKTTLCVSCLERLFKAK---EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNA----- 117 (524)
T ss_pred CCCcccccccccchhhhHHHHHHHHHhhc---cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhh-----
Confidence 34556666777777677888999888842 2233456688888888888888999999998888888765321
Q ss_pred HhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh--hhhhhHHHH------HH-h-hhcCchhhHH
Q psy14676 1299 ASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG--NLQQYVPFV------LK-E-IENQPKRQYL 1368 (1827)
Q Consensus 1299 ~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~--~l~~~LP~I------l~-~-i~~~~~~q~~ 1368 (1827)
+.++-.-+ ...+.+.++.|...++.+|-.+|...+.+++.- .+..++|.= +. . ++-+.-.||+
T Consensus 118 ---Vseillvv----NaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvR 190 (524)
T KOG4413|consen 118 ---VSEILLVV----NAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVR 190 (524)
T ss_pred ---HHHHHHHh----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHH
Confidence 11221111 246889999999999999999999999987641 122221110 00 0 1112335777
Q ss_pred HHHHHHHHHhhccccccchhhhhchH-HHHHHHHhhhhcCCch-hHHHHHHHHHHHhhccC-CCcchHHHHHhhhcCCHH
Q psy14676 1369 LLHSLKEIISWQSTSTSGVAQLQQFV-PAIWAQLFLHCECQEE-GTRNVVAECLGKLTLID-PSNLLPRLQESLKSNSAL 1445 (1827)
Q Consensus 1369 ~l~aL~Eii~~~~~s~~g~~~L~~~~-~~i~~~L~~~~~~~~e-~vR~~aAecLGkL~~~~-p~~~lP~L~~~l~~~~~~ 1445 (1827)
++.-+.|+.+ .| +.....+- ..+++.|...+...++ -+|..+.|-.-.|+..+ .+.|+|+
T Consensus 191 VleLIieifS---iS---pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ----------- 253 (524)
T KOG4413|consen 191 VLELIIEIFS---IS---PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ----------- 253 (524)
T ss_pred HHHHHHHHHh---cC---HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-----------
Confidence 7777777754 22 33332221 3456666665544332 25555666666666543 3444442
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhc-ccccChhHH----HHHHHHHHHhhcCCchHHHHHHHHHhh
Q psy14676 1446 MRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKD-SIKLDDDSE----RKVVKMLLRLLEDKNGEVQNLAVKCLG 1520 (1827)
Q Consensus 1446 ~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~-~~~~~~~~~----~~l~~~ll~~l~D~~~~Vr~~a~~~Lg 1520 (1827)
..++.-+..+++.. +.||.-+|.++--+.|++-.. .++.++... -..+.-.+.++.-.||.-...|+.++|
T Consensus 254 --eglIdlicnIIsGa--dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalG 329 (524)
T KOG4413|consen 254 --EGLIDLICNIISGA--DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALG 329 (524)
T ss_pred --hhHHHHHHHHhhCC--CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHH
Confidence 11222333333221 122222222222222222111 111111111 122344456655556666889999999
Q ss_pred hhhhhhh
Q psy14676 1521 PLVNKVK 1527 (1827)
Q Consensus 1521 ~L~~~l~ 1527 (1827)
.+.....
T Consensus 330 ilGSnte 336 (524)
T KOG4413|consen 330 ILGSNTE 336 (524)
T ss_pred hccCCcc
Confidence 9886654
No 130
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.14 E-value=0.0061 Score=46.54 Aligned_cols=30 Identities=37% Similarity=0.731 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhhhh
Q psy14676 1496 VVKMLLRLLEDKNGEVQNLAVKCLGPLVNK 1525 (1827)
Q Consensus 1496 l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~ 1525 (1827)
++|.++++++|+++.||.+|+.+||.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 469999999999999999999999999864
No 131
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.11 E-value=1.2 Score=52.51 Aligned_cols=238 Identities=18% Similarity=0.260 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccCC-CCchh-HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH--hhchhHHHHHHHHHHHh
Q psy14676 50 EDVSVQLEALDILSDLLSRFGAL-LPSFH-FVILTALLPQLSSPRQAVRKRTIVALSHLVM--SCNLQLYTKLIDFLLEG 125 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~-l~~~~-~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~--~~~~~~~~~l~~~ll~~ 125 (1827)
+++.+|..|+..|+++++++++. +.... ..++..+...|.| ...++.. ..++..++. ..+.+....++..+.+.
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHHh
Confidence 48999999999999999999975 44433 3455556666754 3334443 677777763 33344455556666554
Q ss_pred ccC-CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC-chHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q psy14676 126 LTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-DDELREFCLQACEAFVQRCPKEITPHIQSITE 203 (1827)
Q Consensus 126 L~~-~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~-~delRe~al~ale~~~~~~p~e~~p~l~~ii~ 203 (1827)
..- .-....|..+.+.+..+.+.....+...=+.++..+++.+..+ |+.---.++.-+..+....+ +.++...+.+
T Consensus 89 ~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd 166 (262)
T PF14500_consen 89 VDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFD 166 (262)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHH
Confidence 421 2235679999999999998876666555566777777777655 55433334444444444444 3667777777
Q ss_pred HHHHHhc--cCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCC-CccchhhHHHHHHHHHHHHHHHcCCchh
Q psy14676 204 LCLTYIT--YDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSD-DDDMSWKVRRAAAKCLEAIIATRRDLIG 280 (1827)
Q Consensus 204 ~ll~~l~--~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sd-ddD~sWkVRraAak~L~~l~~~~~~~l~ 280 (1827)
.+.-|.- +.|.-+ |.|.- -+ ..+++-.+|| .+.|
T Consensus 167 ~~~cYFPI~F~pp~~-------------------------------dp~~IT~e----dLk~~L~~cl----~s~~---- 203 (262)
T PF14500_consen 167 VFSCYFPITFRPPPN-------------------------------DPYGITRE----DLKRALRNCL----SSTP---- 203 (262)
T ss_pred HhhheeeeeeeCCCC-------------------------------CCCCCCHH----HHHHHHHHHh----cCcH----
Confidence 7765422 112110 00000 00 1233333333 2212
Q ss_pred hhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 281 DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 281 ~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
.+-+..+|.|++.+.....++|.+++.++.+.+...+ ...+.+++.+|+.++-.
T Consensus 204 ~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~-------------------~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 204 LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG-------------------ADSLSPHWSTIWNALKF 257 (262)
T ss_pred hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC-------------------HHHHHHHHHHHHHHHHH
Confidence 2446789999999999999999999999999885432 24456666666665543
No 132
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.11 E-value=0.11 Score=64.14 Aligned_cols=228 Identities=18% Similarity=0.175 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc-----CchHHHHHHHHHHHHHHHhCCC-----ccccchHHHH
Q psy14676 133 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE-----EDDELREFCLQACEAFVQRCPK-----EITPHIQSIT 202 (1827)
Q Consensus 133 ~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~-----~~delRe~al~ale~~~~~~p~-----e~~p~l~~ii 202 (1827)
.++..+|..+.-.++...+.|.+|++.++..+.+.+.. ..|.+-..|++.+.+.++ .+. ...|+++.|+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAE-SPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHH
Confidence 46777888888888888899999999999988887642 345555556665554433 221 2256777777
Q ss_pred HH-HHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCC----CCCccchhhHHHHHHHHHHHHHHHcCC
Q psy14676 203 EL-CLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEY----SDDDDMSWKVRRAAAKCLEAIIATRRD 277 (1827)
Q Consensus 203 ~~-ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~----sdddD~sWkVRraAak~L~~l~~~~~~ 277 (1827)
.. ++-.|.+. .+|++-+. +|. .|| -|..| +-+.|+||...+-++.+.++.
T Consensus 190 e~VI~Pnl~~~----e~D~ElfE--------ddP------------~EYIrrd~e~sd-~~TrR~AA~dfl~~L~~~~~~ 244 (370)
T PF08506_consen 190 EKVIFPNLCLR----EEDEELFE--------DDP------------EEYIRRDLEGSD-SDTRRRAACDFLRSLCKKFEK 244 (370)
T ss_dssp HHTHHHHHS------HHHHHHHH--------HSH------------HHHHHHHSCSS----SHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCccCCC----HHHHHHHc--------cCH------------HHHHHhhccccc-cCCcHHHHHHHHHHHHHHHhH
Confidence 63 35555542 12222220 000 001 01111 236899999999999988776
Q ss_pred chhhhHHhhhHHHHhh---cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHH
Q psy14676 278 LIGDMYRLVSPPLIAR---FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQ 354 (1827)
Q Consensus 278 ~l~~~~~~v~p~L~~~---l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~ 354 (1827)
.+.+.+...+..+... -...+|.-|.+|+..++++......... +.......-...+.+..+ |+|-+. .
T Consensus 245 ~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~----Gvt~~~~~v~v~~Ff~~~---v~peL~-~ 316 (370)
T PF08506_consen 245 QVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS----GVTQTNELVDVVDFFSQH---VLPELQ-P 316 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT----B-S-B-TTS-HHHHHHHH---TCHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC----CcccccccccHHHHHHHH---hHHHhc-c
Confidence 4444433333333321 1356888899999999998854321110 000000000011222222 222222 1
Q ss_pred hccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhh
Q psy14676 355 LREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAE 397 (1827)
Q Consensus 355 L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~ 397 (1827)
=..++|-+|-.|+..+......+|. +++..++|.+...|+
T Consensus 317 ~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~ 356 (370)
T PF08506_consen 317 DVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQ 356 (370)
T ss_dssp SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTT
T ss_pred cCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhC
Confidence 1146677888888888888888774 577889999999984
No 133
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.11 E-value=0.56 Score=55.25 Aligned_cols=228 Identities=21% Similarity=0.265 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhh-hhhh-hhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccc-hhhhhhHhhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGD-YLKS-ELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLR-PILTDGIPILG 1222 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~-~l~~-~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~-p~~~~~l~~L~ 1222 (1827)
+.|..+|.+|+.+|+.+++.+.. .+.. ....++.-+.+|+.+...=..+++++..+..... +. .....++..+.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~---~~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN---FSPESAVKILRSLF 86 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC---CChhhHHHHHHHHH
Confidence 77899999999999999999974 4553 7788999999999877765666888888775321 11 11223333333
Q ss_pred hhh--cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCccchhhHH
Q psy14676 1223 SFL--RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 1299 (1827)
Q Consensus 1223 ~~L--rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~ 1299 (1827)
... ++.-...|...+..|..++.++...+. .+-...+..+...+. +.|+.-.-.++.++..++...+-.
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~------- 158 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDIS------- 158 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc-------
Confidence 211 233467899999999999998765441 111234444445554 578888888888888887766521
Q ss_pred hhhhhcccccCCCchhhHHHHHHHhcC--------CC----CHhHHHHHHHHHhhhhhhhhh-hhHHHHHHhhhcC-chh
Q psy14676 1300 SILPQIGRHTDLTSVADLKQVILNAFT--------PT----SEEVKSAASYTLGSIAVGNLQ-QYVPFVLKEIENQ-PKR 1365 (1827)
Q Consensus 1300 ~~lgeiG~~~~~~~~~~l~~~~l~~~~--------~~----s~eVr~aAa~aLG~i~~~~l~-~~LP~Il~~i~~~-~~~ 1365 (1827)
...+++++++.-.|- |+ .++++.+--.+|. +...+. -.+|.+++.+.+. +..
T Consensus 159 ------------~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 159 ------------EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred ------------hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHH
Confidence 011233333333331 11 1233332222222 112233 3678888887653 334
Q ss_pred hHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhh
Q psy14676 1366 QYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFL 1403 (1827)
Q Consensus 1366 q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~ 1403 (1827)
+-=+|..|...+.. .|...+.+|+..||+.+-.
T Consensus 225 K~D~L~tL~~c~~~-----y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 225 KLDSLQTLKACIEN-----YGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHH
Confidence 45567788887763 2467889999999998854
No 134
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.07 E-value=0.049 Score=60.00 Aligned_cols=137 Identities=23% Similarity=0.256 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhh-ccCCCCchhHHHHHHH------------hhhcCCCCHHHHHHHHHHHHHHHHhhchhH------
Q psy14676 54 VQLEALDILSDLLSR-FGALLPSFHFVILTAL------------LPQLSSPRQAVRKRTIVALSHLVMSCNLQL------ 114 (1827)
Q Consensus 54 v~~~al~iL~~l~~~-~~~~l~~~~~~il~~l------------l~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~------ 114 (1827)
+|..|+.+|..++.. ....+-+|+..++|-- -..+.||++.||-.|+.++..+.+...+-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 688999999999998 4444555665555443 223578999999999999999988754210
Q ss_pred ---------HH--------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHH-hHHHHHHHHHhhcccCchHH
Q psy14676 115 ---------YT--------KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAE-HIERVMPLILKYSREEDDEL 175 (1827)
Q Consensus 115 ---------~~--------~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p-~l~~i~p~l~~~~~~~~del 175 (1827)
|. ++-..++..|..+.+..+....+.|++.+....| +++.+ ++..++..+...+...|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 11 1122333344555667788899999999999887 45543 56777777777777789999
Q ss_pred HHHHHHHHHHHHHhC
Q psy14676 176 REFCLQACEAFVQRC 190 (1827)
Q Consensus 176 Re~al~ale~~~~~~ 190 (1827)
|..++.+++.++..-
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998887643
No 135
>KOG1993|consensus
Probab=96.04 E-value=8 Score=50.45 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHhcccc--ccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCc
Q psy14676 1050 MRTTHQSNQTFNVIIQRND--IHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDF 1127 (1827)
Q Consensus 1050 ~R~~a~~~L~~l~~~~~~~--l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~ 1127 (1827)
.|.++..+++..+.+..+. |... +...++|-+. .-.+.+.-+|+.....+|+++.+= --
T Consensus 460 ~KDAiYaa~g~~a~~l~~~~dF~~W---------l~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq---------~~ 520 (978)
T KOG1993|consen 460 LKDAIYAAFGLAAYELSNILDFDKW---------LQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQ---------QK 520 (978)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHH---------HHHhhCHHhh-hcccchhHHHHHHHHHHhhhhhee---------ch
Confidence 5666677777555544332 1111 1223344333 223444556778888899998631 11
Q ss_pred chhHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhHHHHHHhhh---hhhhHHHHHHHHHH
Q psy14676 1128 APFTSDIYQCTLVRLKAADI-DQEVKERAISCMGQIICNL---GDYLKSELPVCLPILLDRLR---NEITRLTTVKALTK 1200 (1827)
Q Consensus 1128 ~~~l~~l~~~ll~~L~~~D~-d~eVre~Ai~alg~l~~~~---g~~l~~~l~~lL~~Ll~~L~---~e~tR~~av~al~~ 1200 (1827)
...-..+|.+++.-+. |. |.-||-+++.++..++.-. .+.+-|+++.+.-.+...++ .-+||......++.
T Consensus 521 ~e~k~l~Y~a~lnLL~--d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~ 598 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQ--DQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLST 598 (978)
T ss_pred HhHHHHHHHHHHHhcC--ccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1223457777777776 44 7789999999999998765 34566778777777766664 34679999999998
Q ss_pred HhcCCCccccchhhhhhHhhhhhhhc--chhHHHHHHHHHHHHHHHHhCCCC
Q psy14676 1201 IAASPLRIDLRPILTDGIPILGSFLR--KNQRALKLSTLLLLDTLLVNYPSA 1250 (1827)
Q Consensus 1201 ia~~~~~~dl~p~~~~~l~~L~~~Lr--k~~r~lR~~al~aL~~L~~~~~~~ 1250 (1827)
+.+.. +...+|+..++++-+-.+=+ +.+.-+|-+.+.+|..++...|+.
T Consensus 599 lI~r~-~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 599 LIERV-SEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHH-HHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 88643 22334666555554433322 234559999999999999987764
No 136
>KOG1243|consensus
Probab=95.92 E-value=0.076 Score=67.74 Aligned_cols=233 Identities=18% Similarity=0.272 Sum_probs=158.2
Q ss_pred HHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHhhhcCCCC
Q psy14676 15 GLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP--SFHFVILTALLPQLSSPR 92 (1827)
Q Consensus 15 ~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~--~~~~~il~~ll~~L~~~~ 92 (1827)
+|...+.++|... +.++++|.|+..+.-.. ++-+.|.-++. ++..+. +|...+++.+++.+..++
T Consensus 277 ~L~~~l~~~pe~i------~~~kvlp~Ll~~~~~g~------a~~~~ltpl~k-~~k~ld~~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 277 GLIDRLDNFPEEI------IASKVLPILLAALEFGD------AASDFLTPLFK-LGKDLDEEEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred HHHHHHhhhhHHH------HHHHHHHHHHHHhhccc------cchhhhhHHHH-hhhhccccccccchhhhHHHHhcCcc
Confidence 5666778888754 57899999999886542 22333333322 222222 266789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC
Q psy14676 93 QAVRKRTIVALSHLVMSCNLQLY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE 171 (1827)
Q Consensus 93 ~~VRk~Ai~aL~~l~~~~~~~~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~ 171 (1827)
..||-.=..=+..++.+++++.+ .+.++++..++.. .++.+|...+.++..++...+++- -=.+++..+-....|+
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~~~~--Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLSKRN--LNGELLRYLARLQPDE 420 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhchhh--hcHHHHHHHHhhCccc
Confidence 99999999999999999998765 4578899988875 468899999999999998888771 1235666666555567
Q ss_pred chHHHHHHHHHHHHHHHhCCCccccchHHHH-----HHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCC
Q psy14676 172 DDELREFCLQACEAFVQRCPKEITPHIQSIT-----ELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGED 246 (1827)
Q Consensus 172 ~delRe~al~ale~~~~~~p~e~~p~l~~ii-----~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~ 246 (1827)
+.++| .+-..|-..+.||+...+ ...+..-..||
T Consensus 421 ~~~ir--------tntticlgki~~~l~~~~R~~vL~~aftralkdp--------------------------------- 459 (690)
T KOG1243|consen 421 HGGIR--------TNTTICLGKIAPHLAASVRKRVLASAFTRALKDP--------------------------------- 459 (690)
T ss_pred cCccc--------ccceeeecccccccchhhhccccchhhhhhhcCC---------------------------------
Confidence 77777 445567667788864332 11110000010
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhh
Q psy14676 247 DNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGT 316 (1827)
Q Consensus 247 ~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~ 316 (1827)
--.-|.++..++.+..+.++ ...+-.+|+|.+.-...+.+..||..+..++-..+...
T Consensus 460 ----------f~paR~a~v~~l~at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 460 ----------FVPARKAGVLALAATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred ----------CCCchhhhhHHHhhcccccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 11356666666654443322 23466788888888888999999999998888776544
No 137
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.88 E-value=7.8 Score=51.60 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=76.3
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
.++.+++-++++++..|..|+.+++.+-... .++.+++++.+++.|+.+.||..|.-++..+.+
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~~e----------------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE----------------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcChHH----------------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 4667788889999999999999998653321 277899999999999999999999988888875
Q ss_pred HhccCCCCCCCCcchhHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDI-YQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l-~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
. ..+ ++.+. ...++..+ ..|.|+.|...|+.++..+-..
T Consensus 157 l--------d~~---l~~~~g~~~~l~~l-~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 157 L--------DKD---LYHELGLIDILKEL-VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred c--------CHh---hhhcccHHHHHHHH-hhCCCchHHHHHHHHHHHhchh
Confidence 3 111 12222 12222222 2499999999999999887665
No 138
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.85 E-value=3 Score=55.64 Aligned_cols=339 Identities=15% Similarity=0.170 Sum_probs=170.2
Q ss_pred CCchHHHHHHhccCChhhHHHHHHHHHHHHH--hccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHH
Q psy14676 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVI--IQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQ 1110 (1827)
Q Consensus 1033 ~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~--~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~ 1110 (1827)
..+++.|.+.|.+.+......++.+|.-+.. ..++.+.. ..++|.+.+.+..+...+...+++.+.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~------------~giV~kL~kLl~s~~~~l~~~aLrlL~ 356 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE------------SGIVEKLLKLLPSENEDLVNVALRLLF 356 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH------------cCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5689999999998888999999999985433 22333322 257888888888777888888888776
Q ss_pred HHHHHhccCCCCCCCCcchhHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHhhh
Q psy14676 1111 QFVKVIRPLTSPSSYDFAPFTSD--IYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS--ELPVCLPILLDRLR 1186 (1827)
Q Consensus 1111 ~lv~~l~~~~~~~~~~~~~~l~~--l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~--~l~~lL~~Ll~~L~ 1186 (1827)
.|..- .+.++.+-. ++|.+...+. |. ..+..++..+-.+... +.... ....++|.+++.+-
T Consensus 357 NLSfd---------~~~R~~mV~~GlIPkLv~LL~--d~--~~~~val~iLy~LS~d--d~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 357 NLSFD---------PELRSQMVSLGLIPKLVELLK--DP--NFREVALKILYNLSMD--DEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred HhCcC---------HHHHHHHHHCCCcHHHHHHhC--CC--chHHHHHHHHHHhccC--HhhHHHHhhcchHHHHHHHHH
Confidence 65521 122222222 4444555554 32 3455566555554321 11111 12246777777664
Q ss_pred hhhh---HHHHHHHHHHHhcCCCccccchhhh-hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHH
Q psy14676 1187 NEIT---RLTTVKALTKIAASPLRIDLRPILT-DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVE 1262 (1827)
Q Consensus 1187 ~e~t---R~~av~al~~ia~~~~~~dl~p~~~-~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~ 1262 (1827)
.... ...++..+-.++...... .-+.+ ..++.|....-+... ...+..+..+..+.+. ........+..
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rna--qlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~--~k~~f~~~i~~ 494 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNA--QLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP--LKELFVDFIGD 494 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHH--HHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch--HHHHHHHHHHH
Confidence 3322 333333333344322110 00111 122322221111110 1223344444333211 11222233444
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCc---hhhHHHHHHHhcCCC--CHhHHHHHH
Q psy14676 1263 LAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTS---VADLKQVILNAFTPT--SEEVKSAAS 1337 (1827)
Q Consensus 1263 L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~---~~~l~~~~l~~~~~~--s~eVr~aAa 1337 (1827)
|...+...+. -...+++|+.++.-... + .++.. .-.++|.+.+.+..+ .+++...+.
T Consensus 495 L~~~v~~~~~--ee~~vE~LGiLaNL~~~------------~----ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V 556 (708)
T PF05804_consen 495 LAKIVSSGDS--EEFVVECLGILANLTIP------------D----LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV 556 (708)
T ss_pred HHHHhhcCCc--HHHHHHHHHHHHhcccC------------C----cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH
Confidence 4444444332 13444555544432100 0 11110 025777777777643 457888888
Q ss_pred HHHhhhhhh-----hhh--hhHHHHHHhhhcCchhhHHH---HHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcC
Q psy14676 1338 YTLGSIAVG-----NLQ--QYVPFVLKEIENQPKRQYLL---LHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCEC 1407 (1827)
Q Consensus 1338 ~aLG~i~~~-----~l~--~~LP~Il~~i~~~~~~q~~~---l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~ 1407 (1827)
..+|.++.. .+. .+.+.+.+.+.........+ ++++..++.|... .+.+-. -.++..-|+....+
T Consensus 557 i~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t----r~~ll~-~~~~~~ylidL~~d 631 (708)
T PF05804_consen 557 ILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET----REVLLK-ETEIPAYLIDLMHD 631 (708)
T ss_pred HHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH----HHHHHh-ccchHHHHHHHhcC
Confidence 888886532 222 46677777776533344444 4555555543211 121110 03345556666667
Q ss_pred CchhHHHHHHHHHHHhhccCC
Q psy14676 1408 QEEGTRNVVAECLGKLTLIDP 1428 (1827)
Q Consensus 1408 ~~e~vR~~aAecLGkL~~~~p 1428 (1827)
.+..+|.++-.||.-++..++
T Consensus 632 ~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 632 KNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred CCHHHHHHHHHHHHHHHHhCH
Confidence 777788888888888887664
No 139
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.78 E-value=0.24 Score=54.18 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=108.6
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY----TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG- 150 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~----~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~- 150 (1827)
....+...+...|+++++.-|-.++.-+...++.++.+.| ...+..++..|++++...+++.++.++..+.....
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3446677777888999999999999999999999976655 34567777778887778899999999999987653
Q ss_pred ------hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 151 ------HRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 151 ------~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
+...|+++.+++.+++..++ +...+.|+.++..++...|.-++||-.++-..+..++
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 23578999999999998764 5667789999999999999999999999888887655
No 140
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.67 E-value=0.072 Score=57.87 Aligned_cols=142 Identities=21% Similarity=0.319 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC-----CCHHHHHHHHHHHHHHHH
Q psy14676 34 VCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS-----PRQAVRKRTIVALSHLVM 108 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~-----~~~~VRk~Ai~aL~~l~~ 108 (1827)
..+.|++.|+..+.++.++.+|.|++.+||.+ + .+++|.-. .......+ ......... .+..
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil-G----ALDP~~~k---~~~~~~~~~~~~~~~~~~~~~~-----l~~~ 73 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGIL-G----ALDPYKHK---SIQKSLDSKSSENSNDESTDIS-----LPMM 73 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-c----ccCcHHHh---cccccCCccccccccccchhhH-----Hhhc
Confidence 46788999999997777899999999999875 2 34443211 11111111 111111111 1111
Q ss_pred h---hchhHHHH-HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHH
Q psy14676 109 S---CNLQLYTK-LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACE 184 (1827)
Q Consensus 109 ~---~~~~~~~~-l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale 184 (1827)
. .+++.+.. .+..++.-|++..-..-...+++++..+..+.+.+..||+++++|.++..++.-++.+||..++-+.
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 23344433 3455555555443344566889999999999998889999999999999998777799999988887
Q ss_pred HHHH
Q psy14676 185 AFVQ 188 (1827)
Q Consensus 185 ~~~~ 188 (1827)
.++.
T Consensus 154 ~lv~ 157 (160)
T PF11865_consen 154 DLVS 157 (160)
T ss_pred HHHH
Confidence 7765
No 141
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.55 E-value=0.11 Score=57.39 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHH-cCCchhhhHHhhhHHH------------HhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCC
Q psy14676 259 KVRRAAAKCLEAIIAT-RRDLIGDMYRLVSPPL------------IARFKEREENVKSDIFHAYMALLKGTRTFSPLTPS 325 (1827)
Q Consensus 259 kVRraAak~L~~l~~~-~~~~l~~~~~~v~p~L------------~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~ 325 (1827)
|||.+|..||.++++. .+..+..|+..++|.- .-.++|+++.||.+|+.++.++++..+.+-..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~--- 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ--- 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH---
Confidence 6999999999999999 4556666777666643 23457999999999999999999654321000
Q ss_pred CCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCC
Q psy14676 326 DPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
.+......+....+...+..++..+++. +...++.+
T Consensus 78 -Ae~~~~~~~sFtslS~tLa~~i~~lH~~-------------------------------------Ll~~L~~E------ 113 (182)
T PF13251_consen 78 -AEESKGPSGSFTSLSSTLASMIMELHRG-------------------------------------LLLALQAE------ 113 (182)
T ss_pred -HHhcCCCCCCcccHHHHHHHHHHHHHHH-------------------------------------HHHHHhcc------
Confidence 0000000011122333333333333332 22223110
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhh-hhHHhhhhhHHHhhcchhhhhHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIG-DMYRLVSPPLIARFKEREENVKS 483 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~-~~~~~l~~~L~~~~~d~~~~Vr~ 483 (1827)
.+-.+....++|+..++...+ .-+. .++..++..+...+.+++.+||.
T Consensus 114 ------------------------------~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v 163 (182)
T PF13251_consen 114 ------------------------------KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRV 163 (182)
T ss_pred ------------------------------cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHH
Confidence 112244456777777777777 4444 46777778888888889999999
Q ss_pred HHHHHHHHHHhhcc
Q psy14676 484 DIFHAYMALLKGTR 497 (1827)
Q Consensus 484 ~a~~~l~~L~~~~g 497 (1827)
.++-+++.++...+
T Consensus 164 ~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 164 AALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999987644
No 142
>KOG0413|consensus
Probab=95.52 E-value=13 Score=49.20 Aligned_cols=129 Identities=13% Similarity=0.229 Sum_probs=94.4
Q ss_pred cchhhHHHHHHhhhcccC---CCCchHHHHHHhc-cCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHH
Q psy14676 1014 EGTRNVVAECLGKLTLID---PSNLLPRLQESLK-SNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSP 1089 (1827)
Q Consensus 1014 ~~vR~~a~e~Lg~L~~~~---~~~llP~L~~~L~-s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~ 1089 (1827)
+.+|.++.-+||+++... ...++|.+.+-|. +.....|-..+.+++.+..+-.. .++..+|.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--------------m~d~YiP~ 1010 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--------------MTDRYIPM 1010 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--------------HHHHhhHH
Confidence 345666777788776553 2458999999884 44566777777777766555322 26678999
Q ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh
Q psy14676 1090 VIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGD 1168 (1827)
Q Consensus 1090 l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~ 1168 (1827)
|-.+++|+.+-||..++..+..|.+ .++..|-..||=-++..+- |....+|.-|=-+++.++..-..
T Consensus 1011 I~~~L~Dp~~iVRrqt~ilL~rLLq----------~~~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1011 IAASLCDPSVIVRRQTIILLARLLQ----------FGIVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHh----------hhhhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999998888774 3444555555555555565 88899999999999999876544
No 143
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.52 E-value=7.9 Score=56.74 Aligned_cols=155 Identities=7% Similarity=0.102 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHhhh----cCCCCHHHHHHHHHHHHHHHHhh-chh-----HH-HHHHHHHHH
Q psy14676 56 LEALDILSDLLSRFGALLPSFHFVILTALLPQ----LSSPRQAVRKRTIVALSHLVMSC-NLQ-----LY-TKLIDFLLE 124 (1827)
Q Consensus 56 ~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~----L~~~~~~VRk~Ai~aL~~l~~~~-~~~-----~~-~~l~~~ll~ 124 (1827)
.=+|.-|.+++.+--.-+.-.+..+...+-+. -.+++..|+..|+.+|..++.-. +.+ .| ..++.++..
T Consensus 1110 ~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076 1110 VFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred hhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH
Confidence 34555566665554433322345444444333 34567788888888888877633 221 12 234555554
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC----CCccccchHH
Q psy14676 125 GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRC----PKEITPHIQS 200 (1827)
Q Consensus 125 ~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~----p~e~~p~l~~ 200 (1827)
-+....+.++|+.+++|+..+..+.++.+..-+..|+.++-....++.+++-+.|++.+..++... +.--...+..
T Consensus 1190 im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D 1269 (1780)
T PLN03076 1190 VMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD 1269 (1780)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Confidence 455556678999999999999999999998889999998888888888888888888887665531 2111123445
Q ss_pred HHHHHHHHhc
Q psy14676 201 ITELCLTYIT 210 (1827)
Q Consensus 201 ii~~ll~~l~ 210 (1827)
+|..+.++.+
T Consensus 1270 lV~cL~~Fa~ 1279 (1780)
T PLN03076 1270 CVNCLIAFTN 1279 (1780)
T ss_pred HHHHHHHHHh
Confidence 5665555543
No 144
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.38 E-value=0.17 Score=66.52 Aligned_cols=154 Identities=12% Similarity=0.181 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCc---chHHHHHhhhcCCHH
Q psy14676 1369 LLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSAL 1445 (1827)
Q Consensus 1369 ~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~---~lP~L~~~l~~~~~~ 1445 (1827)
-..|+|-+|..... | ..++.+++.+++...+.+-.++...=.=|-+.+..+|+. .++.+++=++++++.
T Consensus 36 kidAmK~iIa~M~~---G-----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~ 107 (757)
T COG5096 36 KIDAMKKIIAQMSL---G-----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEE 107 (757)
T ss_pred HHHHHHHHHHHHhc---C-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHH
Confidence 46788888875422 2 236777888888776656567777766666667777753 236666667788888
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhh
Q psy14676 1446 MRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNK 1525 (1827)
Q Consensus 1446 ~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~ 1525 (1827)
+|.+++..+.-+= + +.+...+++.+.++++|+.+.||.+|+-|++++-+
T Consensus 108 iR~~AlR~ls~l~-------~-----------------------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~- 156 (757)
T COG5096 108 IRGFALRTLSLLR-------V-----------------------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR- 156 (757)
T ss_pred HHHHHHHHHHhcC-------h-----------------------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-
Confidence 8887665554331 1 11345678999999999999999999999999974
Q ss_pred hhhhhHHHH-HHHHHhhhcccccccccCCccchhHHHHHHHhhh
Q psy14676 1526 VKEFQVETI-VDALCSNMVSDKEQLRDISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1526 l~~~~~~~~-v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~ 1568 (1827)
++++..... ....+..+..|++ +.|.+-|+.+|...
T Consensus 157 ld~~l~~~~g~~~~l~~l~~D~d-------P~Vi~nAl~sl~~i 193 (757)
T COG5096 157 LDKDLYHELGLIDILKELVADSD-------PIVIANALASLAEI 193 (757)
T ss_pred cCHhhhhcccHHHHHHHHhhCCC-------chHHHHHHHHHHHh
Confidence 333333322 2333334444444 49999999999765
No 145
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.27 E-value=0.16 Score=55.63 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=82.9
Q ss_pred HHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhH
Q psy14676 283 YRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRT 362 (1827)
Q Consensus 283 ~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~v 362 (1827)
|+..+|.+...+.|-++..|.-|..++..+++. + ....+-+.+|+++..+-+.|..++++|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~------------------~~~kilPvlPqLI~plk~AL~tr~~~V 96 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLER-G------------------GGEKILPVLPQLIIPLKRALNTRDPEV 96 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-c------------------chhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 778899999999999999999999999999964 1 225678899999999999999999999
Q ss_pred HHHHHHHHHHH---HHhCcccccCchhhHHHHHHHH
Q psy14676 363 RQDCLALLREL---VQTLPGCLAPSLPALIPDVTSV 395 (1827)
Q Consensus 363 R~a~~~ll~~L---~~vl~~~l~~~l~~Llp~i~~~ 395 (1827)
..+++..|..| ...+|.++.+|..+|+|.+--.
T Consensus 97 ~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 97 FCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLF 132 (183)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999 6777889999999999987644
No 146
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.22 E-value=0.11 Score=60.76 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh-HH
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS--FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ-LY 115 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~--~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~-~~ 115 (1827)
+.+|+..++...+|.+++.++.+++.... |... +. .+...++.+...|.+|++.||.+|+.|+.+++...++. ..
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAA-FPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 36677777777799999999999998643 2210 11 12246777888899999999999999999998876543 34
Q ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhc--hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHH
Q psy14676 116 TKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAG--HRFAEHIERVMPLILKYSREEDDELREFCLQACEA 185 (1827)
Q Consensus 116 ~~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la~~~~--~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~ 185 (1827)
..++.++.+.+.. .-+..++...+.+|..++-... +.+.+|++.+ +..+...+..+|..++..+-.
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~l----l~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDL----LSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHH----HHHHHcCChHHHHHHHHHHHH
Confidence 5567777776543 3356788888899998864322 3345555544 444555677777666554433
No 147
>KOG0889|consensus
Probab=95.09 E-value=38 Score=51.83 Aligned_cols=119 Identities=11% Similarity=0.253 Sum_probs=76.4
Q ss_pred hhcCCCC--HHHHHHHHHHHHHHHHhhc-hh---HHHHHHHHHHHhccC--------CCCHHHHHHHHHHHHHHHHHhch
Q psy14676 86 PQLSSPR--QAVRKRTIVALSHLVMSCN-LQ---LYTKLIDFLLEGLTT--------NKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 86 ~~L~~~~--~~VRk~Ai~aL~~l~~~~~-~~---~~~~l~~~ll~~L~~--------~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
+.|.|++ ...|-+-..=+....+.+. ++ .+..+++.++..|.. .+....|..+++.+..+. ..+
T Consensus 12 ~~l~d~~~~~~~klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~--~~e 89 (3550)
T KOG0889|consen 12 RRLVDVNLPIESKLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLP--HNE 89 (3550)
T ss_pred HHhccCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcc--cHH
Confidence 3455543 3566666666666666443 22 245566666666632 233457777877777664 346
Q ss_pred hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHHH
Q psy14676 152 RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK----EITPHIQSITELCL 206 (1827)
Q Consensus 152 ~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~----e~~p~l~~ii~~ll 206 (1827)
.|.||..+++..++.++..|.+|---.|+-.+..+.+.... ++.||+..++.+..
T Consensus 90 ~~~~~~~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~~ly~ 148 (3550)
T KOG0889|consen 90 VFKPFSQELLKVLMRVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIVIDLYK 148 (3550)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999988888777777777666664432 45566665555443
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.06 E-value=0.032 Score=42.57 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=27.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~ 110 (1827)
+++.+++.++|+++.||..|+.|++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5788999999999999999999999998864
No 149
>KOG1077|consensus
Probab=95.02 E-value=16 Score=47.17 Aligned_cols=288 Identities=12% Similarity=0.161 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch
Q psy14676 34 VCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP-SFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL 112 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~-~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~ 112 (1827)
+.+.++..+.+-+.+. ++....-||.+++.+=++ .+. .+..+|-..|+. .+...-||++|+-|+-.+-...++
T Consensus 108 l~klvin~iknDL~sr-n~~fv~LAL~~I~niG~r---e~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spD 181 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSR-NPTFVCLALHCIANIGSR---EMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPD 181 (938)
T ss_pred HHHHHHHHHHhhhhcC-CcHHHHHHHHHHHhhccH---hHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCcc
Confidence 3444444444444332 444455666666544222 111 122333332221 234679999999999998887655
Q ss_pred hHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHH-H------
Q psy14676 113 QLY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQAC-E------ 184 (1827)
Q Consensus 113 ~~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~al-e------ 184 (1827)
-.- ....+.++.-|.+ .+-.+.-.+...+..++...++...-.+..-+..+...+.....++.++..+.. .
T Consensus 182 l~~~~~W~~riv~LL~D-~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDD-QHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred ccChhhHHHHHHHHhCc-cccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 321 2345556655543 335566667777778887777665544444444444444433334344433221 0
Q ss_pred --HHHHhCCCcc-ccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 185 --AFVQRCPKEI-TPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 185 --~~~~~~p~e~-~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
.++..||..- .+-...+...+-+.+..- + +--.+-+|.
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~-~--------------------------------------~~~~~k~vq 301 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKA-Q--------------------------------------EPPKSKKVQ 301 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhcc-c--------------------------------------cCccccchH
Confidence 1111222110 011111111111111000 0 000011122
Q ss_pred HHHHH---HHHH--HHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 262 RAAAK---CLEA--IIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 262 raAak---~L~~--l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
..-|+ .+++ ++.+. +.-.+.+...+..|-+.+.+||.|+|.-++..+..++.. +..
T Consensus 302 ~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss------------------~~s 362 (938)
T KOG1077|consen 302 HSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS------------------EFS 362 (938)
T ss_pred hhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc------------------cch
Confidence 11111 1222 22222 112346777778888888999999999999999888842 223
Q ss_pred HhhHHhhhHHHHHHHHHHhc-cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHh
Q psy14676 337 LCLLSTQVPSLVKALQCQLR-EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVA 396 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~-d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L 396 (1827)
.+.+..+.. .++..|+ +++..+|+-+..+|..++.+- ....|+..+++-|
T Consensus 363 ~davK~h~d----~Ii~sLkterDvSirrravDLLY~mcD~~------Nak~IV~elLqYL 413 (938)
T KOG1077|consen 363 IDAVKKHQD----TIINSLKTERDVSIRRRAVDLLYAMCDVS------NAKQIVAELLQYL 413 (938)
T ss_pred HHHHHHHHH----HHHHHhccccchHHHHHHHHHHHHHhchh------hHHHHHHHHHHHH
Confidence 345555544 4555566 888999999999999998763 4467777777776
No 150
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.98 E-value=0.69 Score=55.42 Aligned_cols=155 Identities=15% Similarity=0.217 Sum_probs=115.7
Q ss_pred HHHHHHHHh-hCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC------CchhHHHHHHHh
Q psy14676 13 SIGLKTVIS-ELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALL------PSFHFVILTALL 85 (1827)
Q Consensus 13 ~~~Lktvi~-~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l------~~~~~~il~~ll 85 (1827)
+..+.-++. .+..+ .-...+..++|.++..+++. ++.+|..++.+|..++.+..+.. .+...-+.+++.
T Consensus 97 ~~~l~w~v~~~~~~~---~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~ 172 (282)
T PF10521_consen 97 SHVLSWIVLSQLDRP---WISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALF 172 (282)
T ss_pred HHHHHHHHHhcCCcc---hHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHH
Confidence 456666666 55443 33467889999999999865 89999999999999999887654 123456666677
Q ss_pred hhcC--------CCCHHHHHHHHHHHHHHHHhhc-------hhHHHHHH-HHHHHhccCCC---CHHHHHHHHHHHHHHH
Q psy14676 86 PQLS--------SPRQAVRKRTIVALSHLVMSCN-------LQLYTKLI-DFLLEGLTTNK---STSTNRTYIQCFAAIC 146 (1827)
Q Consensus 86 ~~L~--------~~~~~VRk~Ai~aL~~l~~~~~-------~~~~~~l~-~~ll~~L~~~~---~~~~r~~ai~~l~~la 146 (1827)
++|. ++...+=..|..|+-.++.... ...+.+.+ +.++..+.-.. .+.++..+++.+..+.
T Consensus 173 ~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 173 PCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 7765 4556788899999999977532 11233333 33666553323 4789999999999999
Q ss_pred HHhchhhHHhHHHHHHHHHhhcccC
Q psy14676 147 RQAGHRFAEHIERVMPLILKYSREE 171 (1827)
Q Consensus 147 ~~~~~~~~p~l~~i~p~l~~~~~~~ 171 (1827)
+..|-....|+..++|.+.+++++.
T Consensus 253 ~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 253 DELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988754
No 151
>KOG1058|consensus
Probab=94.82 E-value=19 Score=46.98 Aligned_cols=264 Identities=17% Similarity=0.160 Sum_probs=142.4
Q ss_pred hhccccchhhHHHHHHhhhccc-CCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhh
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLI-DPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLL 1087 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~-~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Li 1087 (1827)
|..+.+-+|-...+.|++|-.. +.+.++|.++++|....+.+|..|+.++..++..+. . ++|-.|.|+
T Consensus 108 LQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~----------L~pDapeLi 176 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-H----------LIPDAPELI 176 (948)
T ss_pred ccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-h----------hcCChHHHH
Confidence 4567777886666777776544 348899999999999999999999998887766632 2 333377788
Q ss_pred HHHHHhhcCCchhhHHHHHHH---------HHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14676 1088 SPVIASVGDNFYKITAEALLV---------LQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISC 1158 (1827)
Q Consensus 1088 p~l~~~l~D~~~~V~~eAl~~---------l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~a 1158 (1827)
..++..=.|+. --+.|+-. +..+...+.. -+.+.+.++-++-.++.+.. ...++.|.+-+.|
T Consensus 177 ~~fL~~e~Dps--CkRNAFi~L~~~D~ErAl~Yl~~~idq-----i~~~~~~LqlViVE~Irkv~--~~~p~~~~~~i~~ 247 (948)
T KOG1058|consen 177 ESFLLTEQDPS--CKRNAFLMLFTTDPERALNYLLSNIDQ-----IPSFNDSLQLVIVELIRKVC--LANPAEKARYIRC 247 (948)
T ss_pred HHHHHhccCch--hHHHHHHHHHhcCHHHHHHHHHhhHhh-----ccCccHHHHHHHHHHHHHHH--hcCHHHhhHHHHH
Confidence 88776555544 22333221 1122222211 12232333333222333222 2345666777777
Q ss_pred HHHHHHHhhh------------------hhhhhhhhhHHHHHHhhhhhhh-----HHHHHHHHHHHhcCCCccccchhhh
Q psy14676 1159 MGQIICNLGD------------------YLKSELPVCLPILLDRLRNEIT-----RLTTVKALTKIAASPLRIDLRPILT 1215 (1827)
Q Consensus 1159 lg~l~~~~g~------------------~l~~~l~~lL~~Ll~~L~~e~t-----R~~av~al~~ia~~~~~~dl~p~~~ 1215 (1827)
+-.++..... .+..--..++..+.+.-.|..- |+.+.++.. ..++.
T Consensus 248 i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~-----------~~il~ 316 (948)
T KOG1058|consen 248 IYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALH-----------EKILQ 316 (948)
T ss_pred HHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh-----------HHHHH
Confidence 7777765422 1111112222222222222111 444444211 12344
Q ss_pred hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc-------CCCChhHHHHHHHHHHHHHHh
Q psy14676 1216 DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV-------SESDLHIAQLTLTLLTSIAKI 1288 (1827)
Q Consensus 1216 ~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll-------~d~D~~l~~~al~~L~~l~~~ 1288 (1827)
+.+-.+.+.|...+-.+|.=++...-.|+.+.. +..++..|..=+ .|....-|+..+..+...+..
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 444445566666666777766665544444311 223333332111 234456688877777777666
Q ss_pred CCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHh
Q psy14676 1289 QPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEE 1331 (1827)
Q Consensus 1289 ~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~e 1331 (1827)
+|.. -..+++.++..+.|.++.
T Consensus 390 Fp~~---------------------aatvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 390 FPEV---------------------AATVVSLLLDFISDSNEA 411 (948)
T ss_pred ChHH---------------------HHHHHHHHHHHhccCCHH
Confidence 5531 246888888888887754
No 152
>KOG1525|consensus
Probab=94.79 E-value=7 Score=55.09 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=91.8
Q ss_pred hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHh
Q psy14676 282 MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIR 361 (1827)
Q Consensus 282 ~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~ 361 (1827)
.+-.|.|.|..-+....+.+|..|+...|.+...-. ..+...-+.+....+..+.|.++.
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~--------------------~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD--------------------SQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch--------------------hhhcccchHHHHHHHHHhccCChh
Confidence 345677888888888899999999999998884321 122245677888999999999999
Q ss_pred HHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHH
Q psy14676 362 TRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 441 (1827)
Q Consensus 362 vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr 441 (1827)
||..|......+...-|. +..+....+.-. .. + .++. =|+|
T Consensus 316 vR~~~v~~~~~~l~~~~~--------~~~~~~~~~~l~------~~------~-------------~D~~------~rir 356 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPS--------IAKASTILLALR------ER------D-------------LDED------VRVR 356 (1266)
T ss_pred hhhhHHHHhHHHHhcCch--------hhhHHHHHHHHH------hh------c-------------CChh------hhhe
Confidence 999999776655544322 222221111100 00 0 0000 1122
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHh
Q psy14676 442 RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 494 (1827)
Q Consensus 442 ~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~ 494 (1827)
.-++-...... .+-..+.+.++..+...+.|..++||..|+..+.++-+
T Consensus 357 ~~v~i~~~~v~----~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 357 TQVVIVACDVM----KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred eeEEEEEeehh----HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22111111111 11123334467777788999999999999999999987
No 153
>KOG0392|consensus
Probab=94.79 E-value=0.29 Score=65.71 Aligned_cols=178 Identities=15% Similarity=0.086 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhh
Q psy14676 9 RDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVS-VQLEALDILSDLLSRFGALLPSFHFVILTALLPQ 87 (1827)
Q Consensus 9 Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~-v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~ 87 (1827)
|.-+-++|+++...+.+ +++.. ...|-..|+..++...+.+ .-...+.++..+....+..+.+ .-+.++.++..
T Consensus 750 rrgael~L~~l~~~fg~---sl~~k-lp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGG---SLAAK-LPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred hhhHHHHHHHHHHHhhH---HHHHh-cchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 77788899999888754 23321 1122233344443221111 1112223333333233333222 22678888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhh
Q psy14676 88 LSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY 167 (1827)
Q Consensus 88 L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~ 167 (1827)
+.++.+.+|..|+.|++.+......+.....+..++.-+...++..-|..+...+.-+.......+-||..-++|.++..
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 99999999999999999999988777666666666665554444445566666777777777788889999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHhCC
Q psy14676 168 SREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 168 ~~~~~delRe~al~ale~~~~~~p 191 (1827)
++++.|.+|+.+..++..++...|
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccc
Confidence 999999999998887766665444
No 154
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.65 E-value=0.14 Score=56.08 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=81.2
Q ss_pred CCchHHHHHHhccCChhhHHHHHHHHHHHHHh-ccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHH
Q psy14676 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVII-QRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1033 ~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~-~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~ 1111 (1827)
..++|.+.+.+......-|.-|...+..+..+ +++.+.|. +++|++++..+++.+++.|...++.+++.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv----------lPqLI~plk~AL~tr~~~V~~~~L~~Lq~ 106 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV----------LPQLIIPLKRALNTRDPEVFCATLKALQQ 106 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34566666667666666666666666655555 55555555 99999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhc---------CCCHHHHHHHHHHHHHHHHHhhh
Q psy14676 1112 FVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAA---------DIDQEVKERAISCMGQIICNLGD 1168 (1827)
Q Consensus 1112 lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~---------D~d~eVre~Ai~alg~l~~~~g~ 1168 (1827)
++..-. ..++.+.||..++++.+---...+ ..+..+++..-++|..+-.+-|+
T Consensus 107 Lv~~~~----~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 107 LVTSSD----MVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HHHhhh----hhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 975421 124667889888888664111111 12244555555555555555454
No 155
>KOG2025|consensus
Probab=94.55 E-value=0.64 Score=59.18 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=91.0
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHH
Q psy14676 16 LKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAV 95 (1827)
Q Consensus 16 Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~V 95 (1827)
+++++..+|.-- .......-+.-.|+.+.++. +..||-.+|.+|+-++.+.+..=......+...++.-+.|..|.|
T Consensus 66 la~fv~sl~q~d--~e~DlV~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V 142 (892)
T KOG2025|consen 66 LARFVESLPQLD--KEEDLVAGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV 142 (892)
T ss_pred HHHHHHhhhccC--chhhHHHHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence 566777777542 34456666777777777654 889999999999999986665333356678888888899999999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy14676 96 RKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAA 144 (1827)
Q Consensus 96 Rk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~ 144 (1827)
|..|+.||+.+=..=.++.+ +....+..-++.+++++|||.++.++..
T Consensus 143 RiqAv~aLsrlQ~d~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 143 RIQAVLALSRLQGDPKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 99999999998854333332 2333344445678889999999888754
No 156
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.49 E-value=0.39 Score=52.64 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCC-CCchhHHHHHHHhhhcCCCC-HHHHHHHHHHHHHHHHhh
Q psy14676 33 NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGAL-LPSFHFVILTALLPQLSSPR-QAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~-l~~~~~~il~~ll~~L~~~~-~~VRk~Ai~aL~~l~~~~ 110 (1827)
+...+++-++.+.+.+. ++..|..++..+..+++..+.. +..+....+..++..|+.++ +.+++.|+.++..+....
T Consensus 21 ~~l~~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 35677778888888654 7889999999999999998554 44667789999999998754 689999999999999876
Q ss_pred chh------H----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc
Q psy14676 111 NLQ------L----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS 168 (1827)
Q Consensus 111 ~~~------~----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~ 168 (1827)
.+. . +..++..+++-+.+ ......++.++..+....|.-|+||...+-.++...+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 532 2 23334444443332 4578899999999999999999999998877766543
No 157
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.46 E-value=3 Score=48.91 Aligned_cols=234 Identities=14% Similarity=0.122 Sum_probs=135.5
Q ss_pred HHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhchh-HHHHH-HHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--hh
Q psy14676 78 FVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNLQ-LYTKL-IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG--HR 152 (1827)
Q Consensus 78 ~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~~-~~~~l-~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~--~~ 152 (1827)
++-++.++..|+. .+|.++++|..+++..+.+-... ...++ .-.++..+..++++.+|..++.++..++.... ..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 3556778888884 67999999999999987754332 22221 12344444455678999999999998875543 34
Q ss_pred hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCC
Q psy14676 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEG 232 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~ 232 (1827)
+..|+..++..+... .-+.+++..++.+|-.+. ...+....+...++.++..+...
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i~~ll~LL~~G-------------------- 146 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VTNDYHHMLANYIPDLLSLLSSG-------------------- 146 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CCcchhhhHHhhHHHHHHHHHcC--------------------
Confidence 566777666655542 235666666666665552 12222222333344444433210
Q ss_pred CCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCC-CHhHHHHHHHHHH
Q psy14676 233 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKER-EENVKSDIFHAYM 310 (1827)
Q Consensus 233 ~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~-ee~VR~aa~~al~ 310 (1827)
+-++|.-+.++|-.++.. |.....++ .++++.++..|+.. ..++...++..+.
T Consensus 147 ------------------------~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 147 ------------------------SEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred ------------------------ChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 015777788888887764 33333333 25677888888654 4567777777777
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ 364 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~ 364 (1827)
.+-+..+..... ...++-.+++.-.+-.....+.+.+......++++||.
T Consensus 202 ni~~~~~~~~~~----~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~ 251 (254)
T PF04826_consen 202 NINENIKKEAYV----FVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKE 251 (254)
T ss_pred HHHHhhCcccce----eccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhh
Confidence 776555432111 00001112333344444555566666666678888885
No 158
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.33 E-value=2 Score=55.17 Aligned_cols=256 Identities=16% Similarity=0.172 Sum_probs=119.6
Q ss_pred CChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcch
Q psy14676 868 KSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTS 947 (1827)
Q Consensus 868 ~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~ 947 (1827)
++..+++-+.+.+....+.+|+ .-.+.+..+++-+.|+|..||-.|++++ |.+-++.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcEDed~~iR~~aik~l---------------p~~ck~~---- 90 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCEDEDVQIRKQAIKGL---------------PQLCKDN---- 90 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT-SSHHHHHHHHHHG---------------GGG--T-----
T ss_pred CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhH---------------HHHHHhH----
Confidence 4567788888888777765554 6667888888888889999998886664 2222110
Q ss_pred hhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhh
Q psy14676 948 VADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL 1027 (1827)
Q Consensus 948 ~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L 1027 (1827)
..+++.+...|.+.|..++.....++-.+|-.+
T Consensus 91 -----------------------------------------------~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 91 -----------------------------------------------PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSL 123 (556)
T ss_dssp ------------------------------------------------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 011111122222222333333333344444444
Q ss_pred cccCCCCchHHHHHHhc---cCChhhHHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHH
Q psy14676 1028 TLIDPSNLLPRLQESLK---SNSALMRTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITA 1103 (1827)
Q Consensus 1028 ~~~~~~~llP~L~~~L~---s~~~~~R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~ 1103 (1827)
....|...+-.+...+. +.+..+|+-++.+|. .+..-.+..+.|-.|.++ -++..+.+.+.| |++
T Consensus 124 l~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~-------~i~~~ikkvL~D----VTa 192 (556)
T PF05918_consen 124 LKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEE-------FIVDEIKKVLQD----VTA 192 (556)
T ss_dssp HHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHH-------HHHHHHHHHCTT------H
T ss_pred HhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHH-------HHHHHHHHHHHh----ccH
Confidence 44444333333333332 345567888887776 444444455554312122 244555566665 555
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHh-hc---CCCHHHHHHHHHHHHHHHHHhhh-----hhhh-h
Q psy14676 1104 EALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLK-AA---DIDQEVKERAISCMGQIICNLGD-----YLKS-E 1173 (1827)
Q Consensus 1104 eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~-~~---D~d~eVre~Ai~alg~l~~~~g~-----~l~~-~ 1173 (1827)
+=+..+-.+.+.++-. +...-.+....|++.+.+... ++ -.|.+.-.+-+.|+..-+..+.. .+-. .
T Consensus 193 eEF~l~m~lL~~lk~~---~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~ 269 (556)
T PF05918_consen 193 EEFELFMSLLKSLKIY---GGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYM 269 (556)
T ss_dssp HHHHHHHHHHHTSGG------GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHH
T ss_pred HHHHHHHHHHHhCccc---cccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHH
Confidence 5555555555544310 001122345667777765442 11 12456555666666554333211 1111 2
Q ss_pred hhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccc
Q psy14676 1174 LPVCLPILLDRLRNEITRLTTVKALTKIAASPLRID 1209 (1827)
Q Consensus 1174 l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~d 1209 (1827)
...++|.+-+. .+..|+.-+++++.++......+
T Consensus 270 ~~kvlP~l~~l--~e~~kl~lLk~lAE~s~~~~~~d 303 (556)
T PF05918_consen 270 CEKVLPKLSDL--PEDRKLDLLKLLAELSPFCGAQD 303 (556)
T ss_dssp HHHTCCCTT-------HHHHHHHHHHHHHTT----T
T ss_pred HHHhcCChhhC--ChHHHHHHHHHHHHHcCCCCccc
Confidence 23345544333 56678999999999987665444
No 159
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.23 E-value=13 Score=46.87 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=94.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchh------HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---
Q psy14676 43 STAIEKQEDVSVQLEALDILSDLLSRFGALLPSFH------FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--- 113 (1827)
Q Consensus 43 l~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~------~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~--- 113 (1827)
+..+......++..-.+..+++++..-+....-++ +.....+++.|+.++.-+...|...+..++..-...
T Consensus 59 l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~ 138 (429)
T cd00256 59 VNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEG 138 (429)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccch
Confidence 33343344678888999999999988543221122 345666777888888899999999999998653332
Q ss_pred -HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHH-HHHHHHhCC
Q psy14676 114 -LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQA-CEAFVQRCP 191 (1827)
Q Consensus 114 -~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~a-le~~~~~~p 191 (1827)
....++..+...|.+......+..+++|++.+.+.-..+..=.-.+.++.+...++...-.+. .-.++ +-.|+-...
T Consensus 139 ~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q-l~Y~~ll~lWlLSF~ 217 (429)
T cd00256 139 SDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ-LQYQSIFCIWLLTFN 217 (429)
T ss_pred hHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH-HHHHHHHHHHHHhcc
Confidence 223344455555554334566778889999998766654211112244555554432221111 11121 234444332
Q ss_pred Cccccch--HHHHHHHHHHhcc
Q psy14676 192 KEITPHI--QSITELCLTYITY 211 (1827)
Q Consensus 192 ~e~~p~l--~~ii~~ll~~l~~ 211 (1827)
++....+ ..+|+.+.+.++.
T Consensus 218 ~~~~~~~~~~~~i~~l~~i~k~ 239 (429)
T cd00256 218 PHAAEVLKRLSLIQDLSDILKE 239 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHh
Confidence 2222222 3467777666543
No 160
>KOG1243|consensus
Probab=94.18 E-value=0.33 Score=62.16 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=129.1
Q ss_pred hhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14676 1083 YYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQI 1162 (1827)
Q Consensus 1083 l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l 1162 (1827)
-..++|.+++..+-.+..||.--|.-+..++..+.+ ..+-.+||+.+..++. |.++-+|+.++.++..+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~---------~~~~d~I~phv~~G~~--DTn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK---------QILNDQIFPHVALGFL--DTNATLREQTLKSMAVL 396 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH---------HhhcchhHHHHHhhcc--cCCHHHHHHHHHHHHHH
Confidence 556999999999998899998888777777766543 1245689999999998 88999999999999999
Q ss_pred HHHhhhh-hhhhhhhhHHHHHHhhhh-hhh--HHHHHHHHHHHhcCCCccccchhhhh--hHhhhhhhhcchhHHHHHHH
Q psy14676 1163 ICNLGDY-LKSELPVCLPILLDRLRN-EIT--RLTTVKALTKIAASPLRIDLRPILTD--GIPILGSFLRKNQRALKLST 1236 (1827)
Q Consensus 1163 ~~~~g~~-l~~~l~~lL~~Ll~~L~~-e~t--R~~av~al~~ia~~~~~~dl~p~~~~--~l~~L~~~Lrk~~r~lR~~a 1236 (1827)
+..+++. ++.++-+++ .++.. +.. |--+.-++|.|+... .+.+.+ ++..+.+.+|+.-..-|.++
T Consensus 397 a~kL~~~~Ln~Ellr~~----ar~q~d~~~~irtntticlgki~~~l-----~~~~R~~vL~~aftralkdpf~paR~a~ 467 (690)
T KOG1243|consen 397 APKLSKRNLNGELLRYL----ARLQPDEHGGIRTNTTICLGKIAPHL-----AASVRKRVLASAFTRALKDPFVPARKAG 467 (690)
T ss_pred HhhhchhhhcHHHHHHH----HhhCccccCcccccceeeeccccccc-----chhhhccccchhhhhhhcCCCCCchhhh
Confidence 9998874 444443332 33333 221 666666677666431 222222 23345566777777788888
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCC
Q psy14676 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQP 1290 (1827)
Q Consensus 1237 l~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~ 1290 (1827)
+.++......+. ..+....++|.+.++.-|.+..+|..+...+........
T Consensus 468 v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 468 VLALAATQEYFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hHHHhhcccccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 888875443322 234667889999999999999999888777666555433
No 161
>KOG1525|consensus
Probab=94.12 E-value=1.4 Score=61.71 Aligned_cols=239 Identities=18% Similarity=0.216 Sum_probs=135.1
Q ss_pred HHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC--CCCHHHHHHHH
Q psy14676 62 LSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT--NKSTSTNRTYI 139 (1827)
Q Consensus 62 L~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~--~~~~~~r~~ai 139 (1827)
+.+++...-......+..+|..++..|-.+....++.|..--..++..|++.....+-..+...+.. ......+..+-
T Consensus 164 ~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~h 243 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYH 243 (1266)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHH
Confidence 3333333333344456788888888887777777777777777777777765544333333333422 12234566777
Q ss_pred HHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHHHHHhccCCCCCcc
Q psy14676 140 QCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEI-TPHIQSITELCLTYITYDPNYNYE 218 (1827)
Q Consensus 140 ~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~-~p~l~~ii~~ll~~l~~dpn~~~~ 218 (1827)
..+-.+-+.+++. +..++|.+..-+..+++++|-.|..-.+-+...-...+ ..|- .+....+.-+
T Consensus 244 e~i~~L~~~~p~l----l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~-~~~~~fl~r~--------- 309 (1266)
T KOG1525|consen 244 ELILELWRIAPQL----LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYD-DLWSAFLGRF--------- 309 (1266)
T ss_pred HHHHHHHHhhHHH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccch-HHHHHHHHHh---------
Confidence 7777777777765 45688888877777899999666543333332111111 1111 1111111100
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCC
Q psy14676 219 DEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298 (1827)
Q Consensus 219 ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~e 298 (1827)
-|.+-.||....++...+..+.|... ....-.+.-++.+-+
T Consensus 310 -----------------------------------~D~~~~vR~~~v~~~~~~l~~~~~~~----~~~~~~~~l~~~~~D 350 (1266)
T KOG1525|consen 310 -----------------------------------NDISVEVRMECVESIKQCLLNNPSIA----KASTILLALRERDLD 350 (1266)
T ss_pred -----------------------------------ccCChhhhhhHHHHhHHHHhcCchhh----hHHHHHHHHHhhcCC
Confidence 01223588888887776666656432 222223333444555
Q ss_pred HhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHH
Q psy14676 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQ 375 (1827)
Q Consensus 299 e~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~ 375 (1827)
++||......+..+- .....-..+|.+++.+...++|+.++||.-|+.-|.++-.
T Consensus 351 ~~~rir~~v~i~~~~----------------------v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 351 EDVRVRTQVVIVACD----------------------VMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhhhheeeEEEEEee----------------------hhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 555554433221110 1122233455589999999999999999999987776665
No 162
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=27 Score=45.54 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=68.1
Q ss_pred hhhhhHHHHHHHHHHHhhhcH-HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH--hccccchhhhhhhHHHHHHhh
Q psy14676 830 MSCNLQLTIVALSHLVMSCNL-QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR--QAGHRFAEHIERVMPLILKYS 906 (1827)
Q Consensus 830 ~~~~r~~Ai~aL~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~--~~~~~~~~yl~~ilP~ll~~l 906 (1827)
+|-+|.||+..++-+..-..+ ++..+..+....-+.+ ..-+|+-.+.-++..+-. ...+.|..|++..|.-++.-.
T Consensus 473 ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 473 YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc
Confidence 567899999999888553333 3333333333333443 333455433333333332 467889999999999999776
Q ss_pred cccchHHHHHHHHHHHHHHhhCCCccccccccccc
Q psy14676 907 REEDDELREFCLQACEAFVQRCPKEITPHIQSIGR 941 (1827)
Q Consensus 907 ~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~ 941 (1827)
.+=+-++- -..++.||++++.++.||-+++..
T Consensus 552 n~feiD~L---S~vMe~fVe~fseELspfa~eLa~ 583 (970)
T COG5656 552 NTFEIDPL---SMVMESFVEYFSEELSPFAPELAG 583 (970)
T ss_pred ccccchHH---HHHHHHHHHHhHHhhchhHHHHHH
Confidence 55332221 124688999999999999887654
No 163
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.99 E-value=3.2 Score=53.37 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=54.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy14676 43 STAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFL 122 (1827)
Q Consensus 43 l~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~l 122 (1827)
++..++ ++..||..|+..|-.+|.+-++ +.+.+...|.+.|+.+++......-.+|..+...-+...+..++.++
T Consensus 65 ~DLcED-ed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i 139 (556)
T PF05918_consen 65 LDLCED-EDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQI 139 (556)
T ss_dssp HHHHT--SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHhc-ccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344443 3666777776666666655333 34567777777777777777777777777777766666666666666
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHh
Q psy14676 123 LEGLTTNKSTSTNRTYIQCFAAICRQA 149 (1827)
Q Consensus 123 l~~L~~~~~~~~r~~ai~~l~~la~~~ 149 (1827)
... ..++..+|..++..|..=....
T Consensus 140 ~~~--~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 140 ESS--KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp H-----HS-HHHHHHHHHHHHHHGGGS
T ss_pred Hhc--ccCchHHHHHHHHHHHHHHhhC
Confidence 632 1234567777776665444433
No 164
>KOG2549|consensus
Probab=93.94 E-value=0.52 Score=58.77 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh------HHHHHHHHHHHhc
Q psy14676 1130 FTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT------RLTTVKALTKIAA 1203 (1827)
Q Consensus 1130 ~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t------R~~av~al~~ia~ 1203 (1827)
.++-.|..+...+. +.|+..|+.|+.+|+. .+.+..++|.|+..+....+ -+.-+-.+..++.
T Consensus 204 ElQlYy~~It~a~~--g~~~~~r~eAL~sL~T---------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~r 272 (576)
T KOG2549|consen 204 ELQLYYKEITEACT--GSDEPLRQEALQSLET---------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVR 272 (576)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHhhcc---------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHH
Confidence 34444555555555 5678889999998876 35678888888888765543 2333334444444
Q ss_pred C---CCccccchhhhhhHhhhhhhh-------c---chhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCC
Q psy14676 1204 S---PLRIDLRPILTDGIPILGSFL-------R---KNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSES 1270 (1827)
Q Consensus 1204 ~---~~~~dl~p~~~~~l~~L~~~L-------r---k~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~ 1270 (1827)
+ .....++||+++++|.+...+ | +++|++|.-++..+..+++++++.+.. +..-++..+...+.|.
T Consensus 273 SLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 273 SLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDN 351 (576)
T ss_pred HHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCC
Confidence 3 236789999999999766532 1 678999999999999999998876543 5566777777777665
Q ss_pred C
Q psy14676 1271 D 1271 (1827)
Q Consensus 1271 D 1271 (1827)
.
T Consensus 352 ~ 352 (576)
T KOG2549|consen 352 K 352 (576)
T ss_pred C
Confidence 3
No 165
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.77 E-value=19 Score=52.94 Aligned_cols=262 Identities=11% Similarity=0.135 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh-h---
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMS-C--- 110 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~-~--- 110 (1827)
.++++-.+..-+.+..+.++|+-.+.++.+|+...+..+.+-+..++..+-....++++.+-+.|...+..++.. +
T Consensus 1180 QkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1180 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhc
Confidence 345555555555556688999999999999999999988888889999888888888888888888888877643 1
Q ss_pred c---hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc------------------------------hhh---H
Q psy14676 111 N---LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG------------------------------HRF---A 154 (1827)
Q Consensus 111 ~---~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~------------------------------~~~---~ 154 (1827)
+ ...|..++.-+.+.-.+..+..+--.++..|-.++.... ..+ .
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1339 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD 1339 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccch
Confidence 1 234444444443333222222222333333332221110 000 0
Q ss_pred HhHHHHHHHHHhh---cccCchHHHHHHHHHHHHHHHhCCCcccc-ch----HHHHHHHHHHhccCCCCCcccccccCCC
Q psy14676 155 EHIERVMPLILKY---SREEDDELREFCLQACEAFVQRCPKEITP-HI----QSITELCLTYITYDPNYNYEDEEEGLGG 226 (1827)
Q Consensus 155 p~l~~i~p~l~~~---~~~~~delRe~al~ale~~~~~~p~e~~p-~l----~~ii~~ll~~l~~dpn~~~~ddd~~~~~ 226 (1827)
.+..--+|++..+ +.++..|||..|++.|=..+...+..|.| +. ..++-.++..++....-... +++.+
T Consensus 1340 ~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~--~~~~~- 1416 (1780)
T PLN03076 1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGG--DEPEG- 1416 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccc-
Confidence 1122345555443 56789999999999885556666777765 32 33444444444432100000 00000
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHH---HHcCCchhhhHHhhhHHHHhhcCCCCHhHHH
Q psy14676 227 EGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAII---ATRRDLIGDMYRLVSPPLIARFKEREENVKS 303 (1827)
Q Consensus 227 ~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~---~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~ 303 (1827)
-+.+. +.+..+...|- ......+|..++ ..+-+.+.+.++.++..|.......++.+-.
T Consensus 1417 ----~~~~~-------------~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ 1478 (1780)
T PLN03076 1417 ----QGVDG-------------DQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAG 1478 (1780)
T ss_pred ----ccccc-------------cccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 00000 00111234585 344445555544 3333333444445555555555666777777
Q ss_pred HHHHHHHHHHhhhc
Q psy14676 304 DIFHAYMALLKGTR 317 (1827)
Q Consensus 304 aa~~al~~ll~~~~ 317 (1827)
.+..++..++.+.+
T Consensus 1479 ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1479 IGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHHHHHhh
Confidence 77788888875543
No 166
>KOG2933|consensus
Probab=93.33 E-value=1.3 Score=51.84 Aligned_cols=113 Identities=21% Similarity=0.247 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCC
Q psy14676 345 PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEG 424 (1827)
Q Consensus 345 p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~ 424 (1827)
...+...++.|.++++...-.++..+..|...-+..+.+.+..++..+.+.++.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKN-------------------------- 140 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKN-------------------------- 140 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC--------------------------
Confidence 344566778888999999999999999999999988888888888888887731
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHh
Q psy14676 425 EDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 494 (1827)
Q Consensus 425 ~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~ 494 (1827)
....|-++|+.++..++..+...+...++.++-.|+....+...-||++|-+.|..++.
T Consensus 141 -----------lRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 141 -----------LRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 23447788999999999988877766777777777776677777777777777666654
No 167
>KOG1822|consensus
Probab=93.13 E-value=62 Score=46.89 Aligned_cols=192 Identities=14% Similarity=0.176 Sum_probs=127.1
Q ss_pred HHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 80 ILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNLQLY-TKLIDFLLEGLTT--NKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 80 il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~~~~-~~l~~~ll~~L~~--~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
....+...++. .++.+|+-...|+..+... .+.+. ...+...-..+.+ ...+..+..+.+|++++.++.|...+.
T Consensus 52 ~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~ 130 (2067)
T KOG1822|consen 52 LEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGR 130 (2067)
T ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcc
Confidence 44445555554 5778999999999988877 33321 2222222233332 234567788999999999999988887
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEIT--PHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGM 233 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~--p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~ 233 (1827)
-+.+.+.++.++.+...+-.|......+......|+.--. .+...+.......+
T Consensus 131 ~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~l------------------------ 186 (2067)
T KOG1822|consen 131 GLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSL------------------------ 186 (2067)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhh------------------------
Confidence 7888999999988776666676666667777777763211 11122222111111
Q ss_pred CCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCch-hhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy14676 234 DTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLI-GDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 234 d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l-~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~l 312 (1827)
-|.|..||-++++|+.++..-.+..+ ..-++....+..+.+...+|.+|.+...+++++
T Consensus 187 --------------------ld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~L 246 (2067)
T KOG1822|consen 187 --------------------LDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSL 246 (2067)
T ss_pred --------------------hhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHH
Confidence 12355799999999999887655443 334555566666777889999999999999999
Q ss_pred Hhhh
Q psy14676 313 LKGT 316 (1827)
Q Consensus 313 l~~~ 316 (1827)
+...
T Consensus 247 la~~ 250 (2067)
T KOG1822|consen 247 LALG 250 (2067)
T ss_pred Hhcc
Confidence 8543
No 168
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=93.09 E-value=0.67 Score=46.80 Aligned_cols=80 Identities=15% Similarity=0.278 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-CccccchHHHHHHHH
Q psy14676 128 TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP-KEITPHIQSITELCL 206 (1827)
Q Consensus 128 ~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-~e~~p~l~~ii~~ll 206 (1827)
...+...|+.++.+++.+.+..++.+..+.++|+-.+...+. .+++|+.|+.++..|+...+ +++.|+++.++-.++
T Consensus 25 ~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~--~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 25 GKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALE--IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 345667899999999999998888888888888877777664 45999999999999999886 478888888888887
Q ss_pred HHh
Q psy14676 207 TYI 209 (1827)
Q Consensus 207 ~~l 209 (1827)
++.
T Consensus 103 ~~~ 105 (107)
T PF08064_consen 103 PLW 105 (107)
T ss_pred Hhc
Confidence 654
No 169
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.98 E-value=1.9 Score=49.55 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=61.9
Q ss_pred CcchhHHHHHHHHHHHHhh-----cCCC---HHHHHHHHHHHHHHHHHhhhh---hhh-hhhhhHHHHHHhhhhhhhHHH
Q psy14676 1126 DFAPFTSDIYQCTLVRLKA-----ADID---QEVKERAISCMGQIICNLGDY---LKS-ELPVCLPILLDRLRNEITRLT 1193 (1827)
Q Consensus 1126 ~~~~~l~~l~~~ll~~L~~-----~D~d---~eVre~Ai~alg~l~~~~g~~---l~~-~l~~lL~~Ll~~L~~e~tR~~ 1193 (1827)
...||+++++|.++..+-+ .+.| ..+|..|...++-+.++++.. +.| ...+++..++++-+.+.|...
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YG 349 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYG 349 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhh
Confidence 3469999999888765543 2333 239999999999999999864 445 456788888998889999999
Q ss_pred HHHHHHHHhcCC
Q psy14676 1194 TVKALTKIAASP 1205 (1827)
Q Consensus 1194 av~al~~ia~~~ 1205 (1827)
|++++..+....
T Consensus 350 alkgls~l~ke~ 361 (450)
T COG5095 350 ALKGLSILSKEV 361 (450)
T ss_pred hhhhhhhhchhh
Confidence 999999887654
No 170
>KOG0567|consensus
Probab=92.77 E-value=4.2 Score=46.71 Aligned_cols=204 Identities=18% Similarity=0.193 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHH--HhhC
Q psy14676 852 LYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAF--VQRC 928 (1827)
Q Consensus 852 ~~~~l~~~l~~~l~~-~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~--v~~~ 928 (1827)
.+..-++.++..+.. +..|.||-.+-.++|++. .+.+++++-++.+|.-.+||++|.-|+..+ ....
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 344445556665544 556888888888888774 356778888888777788999988887653 3333
Q ss_pred CC--cccccccccccc--CCcchhhhhHHHHHhhcCCChHhHhhh-hhcccchhhHhhhhcccccchhhhhhhhHHHHHH
Q psy14676 929 PK--EITPHIQSIGRH--TDLTSVADLKQVILNAFTPTSEEVKSA-ASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWA 1003 (1827)
Q Consensus 929 ~~--~i~p~l~~i~~~--~~~s~~~~L~~~l~~~~~~~~e~~r~~-~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~ 1003 (1827)
++ ...||.. .-+- .+.+++.++...++..-.+.-+..+.. ..+..|+. .-+.
T Consensus 134 ~~~~~~~p~~S-vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------------------eaI~ 190 (289)
T KOG0567|consen 134 DKIANSSPYIS-VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------------------EAIN 190 (289)
T ss_pred ccccccCcccc-CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------------------HHHH
Confidence 33 3555544 2111 234556666554433221111111110 11112221 1133
Q ss_pred HHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhcc--CChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1004 QLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKS--NSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1004 ~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s--~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
.+...+.+++.-.|--++-|+|+|-. ..-+|.+.+.|.. ..+.+|..++.+||.++..
T Consensus 191 al~~~l~~~SalfrhEvAfVfGQl~s---~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------------- 250 (289)
T KOG0567|consen 191 ALIDGLADDSALFRHEVAFVFGQLQS---PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------------- 250 (289)
T ss_pred HHHHhcccchHHHHHHHHHHHhhccc---hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------------
Confidence 44444555666666677888888754 4568999999843 4688999999999976543
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~ 1111 (1827)
.-++.+.+-++|+.+.|+..+--++..
T Consensus 251 ---~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 251 ---DCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 355666667888888777766555444
No 171
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.70 E-value=26 Score=44.35 Aligned_cols=212 Identities=15% Similarity=0.176 Sum_probs=127.6
Q ss_pred hhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1212 PILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1212 p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
.++...+..+.+++...+..+|.-++..|..+..+.+. ++...++.++.-|..=+-|....||..|+-+|+..-.....
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 34555555666666666788999999999988887653 66678888888888888888999999988888775431110
Q ss_pred ccchhhHHhhhhhcccccCCCchhhHHHHHHHhc-CCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcC--chhhHH
Q psy14676 1292 ALVEPAAASILPQIGRHTDLTSVADLKQVILNAF-TPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQ--PKRQYL 1368 (1827)
Q Consensus 1292 ~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~-~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~--~~~q~~ 1368 (1827)
.-..+..++...+ .|+|.|||.+|... +.+.| .-+|.|++-..+- ..++-.
T Consensus 166 ---------------------een~~~n~l~~~vqnDPS~EVRr~alln---i~vdn--sT~p~IlERarDv~~anRr~v 219 (885)
T COG5218 166 ---------------------EENRIVNLLKDIVQNDPSDEVRRLALLN---ISVDN--STYPCILERARDVSGANRRMV 219 (885)
T ss_pred ---------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHH---eeeCC--CcchhHHHHhhhhhHHHHHHH
Confidence 0012344444444 57899999987553 33322 4679999987762 223333
Q ss_pred HHHHHHHHHhhccccccchhhhhchHHHHHHHHhhh-hcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHH
Q psy14676 1369 LLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLH-CECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR 1447 (1827)
Q Consensus 1369 ~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~-~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R 1447 (1827)
.-+.|.-+-.... ..+.+.+- ++++ +.+-+..+|++++..+..= ...|.. ..+.+++..-+-.-|
T Consensus 220 Y~r~Lp~iGd~~~------lsi~kri~-----l~ewgl~dRe~sv~~a~~d~ia~~-w~~~~d--~~lveLle~lDvSr~ 285 (885)
T COG5218 220 YERCLPRIGDLKS------LSIDKRIL-----LMEWGLLDREFSVKGALVDAIASA-WRIPED--LRLVELLEFLDVSRR 285 (885)
T ss_pred HHHHhhhhcchhh------ccccceeh-----hhhhcchhhhhhHHHHHHHHHHHH-hccccc--ccHHHHHHHHhhhhH
Confidence 3455544432111 12333321 3332 2344677888777665432 233332 133444443344556
Q ss_pred HHHHHHHHHHhhhcCCC
Q psy14676 1448 TTVLTAVKFTISDQMTS 1464 (1827)
Q Consensus 1448 ~t~l~Alk~~~~~~~~~ 1464 (1827)
..++.||+.++...++.
T Consensus 286 sv~v~aik~~F~~R~D~ 302 (885)
T COG5218 286 SVLVAAIKGVFEKRPDV 302 (885)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 67888888888765443
No 172
>KOG1949|consensus
Probab=92.62 E-value=0.74 Score=58.35 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=111.3
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Q psy14676 1088 SPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLG 1167 (1827)
Q Consensus 1088 p~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g 1167 (1827)
|.+..+++-+++.||+.|+..+-.+.....| +. ...+....++.=+..+.+-|. |.-+.||..|+..+..+...+=
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dp-d~-~~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDP-DL-HAEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCC-Cc-cHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHH
Confidence 4556788889999999998887776654443 11 124455666766777777777 8899999999999888887765
Q ss_pred hhhhh-hhhhhHHHHHHhhhhhh---hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHH
Q psy14676 1168 DYLKS-ELPVCLPILLDRLRNEI---TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTL 1243 (1827)
Q Consensus 1168 ~~l~~-~l~~lL~~Ll~~L~~e~---tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L 1243 (1827)
..+.+ -+..++..+.+.+..++ .|.++.+++..++..+.. .+.+..++|.+.-.+.++...+|.+.++-|-.+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s---h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS---HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc---hhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 55543 45566666766665554 399999999999986542 367778889888888899999999999888664
No 173
>KOG2933|consensus
Probab=92.58 E-value=1.4 Score=51.44 Aligned_cols=179 Identities=11% Similarity=0.137 Sum_probs=125.8
Q ss_pred chhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCC
Q psy14676 256 MSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDS 335 (1827)
Q Consensus 256 ~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~ 335 (1827)
..|-..--+..-+..++...++.+.+.+..+...+++-++.....|=.+|+.+++.+.....
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln------------------ 161 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN------------------ 161 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34888778888888899888898999999999999999998888999999999998885421
Q ss_pred hHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCC
Q psy14676 336 PLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDT 415 (1827)
Q Consensus 336 ~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~ 415 (1827)
..+...+...+..++..-.+.+.=||..+-..|..++..... +.+++.+...+++
T Consensus 162 --~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~----------------- 216 (334)
T KOG2933|consen 162 --NSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQH----------------- 216 (334)
T ss_pred --HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhh-----------------
Confidence 223334444444444433344555899999888888865532 2345555555543
Q ss_pred cccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 416 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 416 e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
.+-|+|..+..|.+.+....| ....++...+++.+-.-..|.-+.+|.+|--...++.
T Consensus 217 --------------------~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~ 276 (334)
T KOG2933|consen 217 --------------------SNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELK 276 (334)
T ss_pred --------------------hchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHH
Confidence 134688888888888888777 4455666677777777777777777766665555554
Q ss_pred hhcc
Q psy14676 494 KGTR 497 (1827)
Q Consensus 494 ~~~g 497 (1827)
+++.
T Consensus 277 ~v~~ 280 (334)
T KOG2933|consen 277 EVLK 280 (334)
T ss_pred HHHH
Confidence 4443
No 174
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.40 E-value=6.2 Score=49.53 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=70.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1433 PRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1433 P~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
-++..-+.+++-.+|.-+++-+..+. +.-..+|+.+. +.++.-+.+-+-|.++.||
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~-d~v~eIDe~l~-----------------------N~L~ekl~~R~~DRE~~VR 149 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLS-DVVREIDEVLA-----------------------NGLLEKLSERLFDREKAVR 149 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHH-HhcchHHHHHH-----------------------HHHHHHHHHHHhcchHHHH
Confidence 44455556788889999988887665 33455666653 4455666666779999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHh
Q psy14676 1513 NLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYC 1566 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~ 1566 (1827)
..|.++|.++.. +..++-..+++.++..+++|++. +|||.|+..+.
T Consensus 150 ~eAv~~L~~~Qe-~~~neen~~~n~l~~~vqnDPS~-------EVRr~allni~ 195 (885)
T COG5218 150 REAVKVLCYYQE-MELNEENRIVNLLKDIVQNDPSD-------EVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHh-ccCChHHHHHHHHHHHHhcCcHH-------HHHHHHHHHee
Confidence 999999998873 22233334555555556666554 99999988663
No 175
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.03 E-value=1.8 Score=51.91 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=100.6
Q ss_pred CCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH---HH-----HHH-HHHHHhcc-------CCCCHHH
Q psy14676 71 ALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL---YT-----KLI-DFLLEGLT-------TNKSTST 134 (1827)
Q Consensus 71 ~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~---~~-----~l~-~~ll~~L~-------~~~~~~~ 134 (1827)
+.+..+.+-+++.++..++|.++.+|.+++.++.++...++... +. +++ +.+...|. .+++..+
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 34555677899999999999999999999999999999887665 32 222 33333332 1344567
Q ss_pred HHHHHHHHHHHHHHh-----chhhHHhHHHHHHHHHhhcc----cCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHH
Q psy14676 135 NRTYIQCFAAICRQA-----GHRFAEHIERVMPLILKYSR----EEDDELREFCLQACEAFVQRCPKEITPHIQSITELC 205 (1827)
Q Consensus 135 r~~ai~~l~~la~~~-----~~~~~p~l~~i~p~l~~~~~----~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~l 205 (1827)
-+.+..|+-.++... ..+...+...+-..+++.+. .+..+++...++.+..++...+-....|+..+++.+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 788889999998764 22333233333343444332 235889999999999999999999999999999999
Q ss_pred HHHhc
Q psy14676 206 LTYIT 210 (1827)
Q Consensus 206 l~~l~ 210 (1827)
.++|.
T Consensus 271 ~~~l~ 275 (282)
T PF10521_consen 271 SQILE 275 (282)
T ss_pred HHHhc
Confidence 99774
No 176
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=91.93 E-value=0.92 Score=45.60 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCC
Q psy14676 1129 PFTSDIYQCTLVRLKAAD--IDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPL 1206 (1827)
Q Consensus 1129 ~~l~~l~~~ll~~L~~~D--~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~ 1206 (1827)
+++--++..+-..+.+.+ .+..-|.+++.+++.+++..|..+...+|++.-.|...+..++-|..|.+++..+.....
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 344445555545554333 244669999999999999999999899999999999999888889999999999887655
Q ss_pred ccccchhhhhhHhhh
Q psy14676 1207 RIDLRPILTDGIPIL 1221 (1827)
Q Consensus 1207 ~~dl~p~~~~~l~~L 1221 (1827)
..++.|.+...+..+
T Consensus 87 ~~~l~~ll~~~~~~i 101 (107)
T smart00802 87 EEELGPLLDQIFAAI 101 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444443
No 177
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.92 E-value=1.9 Score=53.12 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh---H--HHHHHHHHHHhc--
Q psy14676 1131 TSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT---R--LTTVKALTKIAA-- 1203 (1827)
Q Consensus 1131 l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t---R--~~av~al~~ia~-- 1203 (1827)
+...|..+...+. +.+...|..|+..+.. .+.+..++|.|+..+.+..+ . ...+..+-.++.
T Consensus 176 lq~yf~~It~a~~--~~~~~~r~~aL~sL~t---------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~AL 244 (343)
T cd08050 176 LQLYFEEITEALV--GSNEEKRREALQSLRT---------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRAL 244 (343)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHhcc---------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 3444444555554 4566778888877654 35677888888877765543 1 333333333333
Q ss_pred -CCCccccchhhhhhHhhhhhhh----------cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCCh
Q psy14676 1204 -SPLRIDLRPILTDGIPILGSFL----------RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1204 -~~~~~dl~p~~~~~l~~L~~~L----------rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~ 1272 (1827)
......++||++.++|.+.+.+ -+++|.+|.-|...|..+++.++...+ .+...++..+...+.|...
T Consensus 245 l~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 245 LDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKK 323 (343)
T ss_pred hcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCC
Confidence 2235778899999999877654 246799999999999999999887643 3455666666666665544
Q ss_pred h
Q psy14676 1273 H 1273 (1827)
Q Consensus 1273 ~ 1273 (1827)
.
T Consensus 324 ~ 324 (343)
T cd08050 324 P 324 (343)
T ss_pred C
Confidence 3
No 178
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.85 E-value=0.84 Score=46.08 Aligned_cols=95 Identities=20% Similarity=0.151 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCC
Q psy14676 1129 PFTSDIYQCTLVRLKA--ADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPL 1206 (1827)
Q Consensus 1129 ~~l~~l~~~ll~~L~~--~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~ 1206 (1827)
+++--++..+-..+.+ ...+..-|.+++.+++.+++..|..+....|++.-.|...++.+.-|..|++++..+.....
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 3444445555455542 23567789999999999999888888888999888888888888889999999999988665
Q ss_pred ccccchhhhhhHhhhhh
Q psy14676 1207 RIDLRPILTDGIPILGS 1223 (1827)
Q Consensus 1207 ~~dl~p~~~~~l~~L~~ 1223 (1827)
..++.|.++..+..+..
T Consensus 87 ~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 87 EEDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666655554433
No 179
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.82 E-value=2.1 Score=58.89 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFVQRC 190 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~ 190 (1827)
+..++.+++.++..+..-+|..+.+.|+.|+..+
T Consensus 587 ~~vlveiLLslls~~s~llR~~~~~vf~~~~~~~ 620 (784)
T PF04931_consen 587 SEVLVEILLSLLSQPSALLRKVSEQVFEAFCPHL 620 (784)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHhhc
Confidence 5677888888888888889999999888887543
No 180
>KOG2149|consensus
Probab=91.68 E-value=1.6 Score=52.92 Aligned_cols=129 Identities=20% Similarity=0.223 Sum_probs=98.3
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHH-hchhhHH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL---TTNKSTSTNRTYIQCFAAICRQ-AGHRFAE 155 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L---~~~~~~~~r~~ai~~l~~la~~-~~~~~~p 155 (1827)
-+.-+++.+.+.++.||+-|...+-.+....+.. +...+-.+++.+ -.+.+..+|...++.+-.+... ++...+|
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~-l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAE-LQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHH-HHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 3555778899999999999999999998884443 332333344433 2245678999999999886654 4555799
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
++.-++|.+..++..-.+++|+-++-.+..++.+||..+..+...+++-...++
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999999999999999887766655555554443
No 181
>KOG2022|consensus
Probab=91.67 E-value=61 Score=43.42 Aligned_cols=153 Identities=11% Similarity=0.188 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHH
Q psy14676 51 DVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQL-----SSPRQAVRKRTIVALSHLVMSCNLQ--LYTKLIDFLL 123 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L-----~~~~~~VRk~Ai~aL~~l~~~~~~~--~~~~l~~~ll 123 (1827)
+....+.++..+-.+++++|...... ++.+++.. +-+++..-+.+...+|.++..+.+. .++..++.++
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~~~~----i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~ 555 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETESTW----IPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLF 555 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhHH----HHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHH
Confidence 35667888999999999998754433 44444443 3357888889999999999988754 5677889999
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHhC-CCccccchHH
Q psy14676 124 EGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE--EDDELREFCLQACEAFVQRC-PKEITPHIQS 200 (1827)
Q Consensus 124 ~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~--~~delRe~al~ale~~~~~~-p~e~~p~l~~ 200 (1827)
++|.. ...-..++..+..+|+.++..+.||.+.++.+.-..+.. -.+..|.....+++..+.+. |+++..|+..
T Consensus 556 ~~Lh~---sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 556 QGLHN---SKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HHhcC---chHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 99853 234456677799999999999999999999888777643 24556777888898887765 7888889999
Q ss_pred HHHHHHHHhc
Q psy14676 201 ITELCLTYIT 210 (1827)
Q Consensus 201 ii~~ll~~l~ 210 (1827)
++..++.-+.
T Consensus 633 lin~il~qle 642 (982)
T KOG2022|consen 633 LINPILSQLE 642 (982)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 182
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=91.64 E-value=1.8 Score=43.54 Aligned_cols=77 Identities=13% Similarity=0.266 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHHHHHh
Q psy14676 131 STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK-EITPHIQSITELCLTYI 209 (1827)
Q Consensus 131 ~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~-e~~p~l~~ii~~ll~~l 209 (1827)
+...|+.++.+++.+.+..+..+..+.++|+-.+...+. .+|+|+.|+.++..|+...++ ++.|.++.++-.++++.
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 456799999999999998888888888888887777764 678999999999999998864 67777777777777653
No 183
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.21 E-value=14 Score=45.70 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=69.5
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHH
Q psy14676 16 LKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAV 95 (1827)
Q Consensus 16 Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~V 95 (1827)
.-.+...+|. . + +...++..|...+.++.+.......+.+|+.-+..++..+ -..+...+...|++..+.|
T Consensus 7 ~~~~L~~l~~-~-~----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~v 77 (339)
T PF12074_consen 7 HASMLSSLPS-S-S----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPV 77 (339)
T ss_pred HHHHHHhCCC-c-c----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcH
Confidence 3456677777 3 2 4455555555555666677777777888877777773333 3578899999999999889
Q ss_pred HHHHHHHHHHHHH----hhchhHHHHHHHHHHHhc
Q psy14676 96 RKRTIVALSHLVM----SCNLQLYTKLIDFLLEGL 126 (1827)
Q Consensus 96 Rk~Ai~aL~~l~~----~~~~~~~~~l~~~ll~~L 126 (1827)
|+.-+.+++.... .-.......+++.+++.+
T Consensus 78 R~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 78 RRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 9999999999876 222334455566666655
No 184
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.15 E-value=6.3 Score=47.73 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcC
Q psy14676 11 ISSIGLKTVISELPLGSNALAANVCRRITGKLS-TAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLS 89 (1827)
Q Consensus 11 i~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll-~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~ 89 (1827)
|...-|+.+-..+.++. ....++..|+ .++.+. ++.+|+.|+.+||-.+---. ....+.+..++..++
T Consensus 6 i~~~lL~~~~~~~~~~~------~l~~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~ 74 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNI------SLESLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQ 74 (298)
T ss_pred HHHHHHHhccccCCCcc------hHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHH
Confidence 34445555555554433 1334555444 677654 78999999999997754322 133456777778887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhchhHHH------------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhh-HHh
Q psy14676 90 SPRQAVRKRTIVALSHLVMSCNLQLYT------------KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRF-AEH 156 (1827)
Q Consensus 90 ~~~~~VRk~Ai~aL~~l~~~~~~~~~~------------~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~-~p~ 156 (1827)
..+..||..|+.++..+....+...+. .+.+-+...|.+. ++.++..+++.++.+.-+---.- ..-
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~~~~v 153 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISDPPKV 153 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 678999999999999998877654432 2333444444443 67899999999998764322111 122
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
+..++-..+.-...++..+|+.--.+|..++.
T Consensus 154 L~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 154 LSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 34444333433345567777443334444444
No 185
>KOG2081|consensus
Probab=90.94 E-value=57 Score=41.71 Aligned_cols=236 Identities=12% Similarity=0.159 Sum_probs=134.0
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH----HHHHH---HHHHHhc----cCCCCHHHHHHHHHHHHHHHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL----YTKLI---DFLLEGL----TTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~----~~~l~---~~ll~~L----~~~~~~~~r~~ai~~l~~la~ 147 (1827)
.+..+.+..+++ ...-..|+.++..+.....+.. +...+ ..++... ....+.+.++.++..+..+++
T Consensus 199 pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~e 276 (559)
T KOG2081|consen 199 PLITLAFRSLSD--DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGE 276 (559)
T ss_pred HHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence 455666666763 3345566666666655443211 21111 1111111 123556778888888888887
Q ss_pred HhchhhHH---hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC-----C------CccccchHHHHHHHHHHhccCC
Q psy14676 148 QAGHRFAE---HIERVMPLILKYSREEDDELREFCLQACEAFVQRC-----P------KEITPHIQSITELCLTYITYDP 213 (1827)
Q Consensus 148 ~~~~~~~p---~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~-----p------~e~~p~l~~ii~~ll~~l~~dp 213 (1827)
+-...+.. +.-.++..++-.....+.|+-+.. |.+|.+.- + .-++||...++..+.+..+|.|
T Consensus 277 af~~~i~~np~~~l~~vellLl~~~h~~~evie~S---F~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~ 353 (559)
T KOG2081|consen 277 AFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEAS---FNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP 353 (559)
T ss_pred HHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhh---HHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC
Confidence 64322221 122234344444445566666555 44554421 1 1378999999999999999977
Q ss_pred CCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhh
Q psy14676 214 NYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 293 (1827)
Q Consensus 214 n~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~ 293 (1827)
|-.+ +-+ +++ .--..|......+..++.-.|. ...++++.-.+.+
T Consensus 354 -~~~~--------------l~E----------e~~-------~f~~fR~~v~dvl~Dv~~iigs--~e~lk~~~~~l~e- 398 (559)
T KOG2081|consen 354 -DQFD--------------LPE----------EES-------EFFEFRLKVGDVLKDVAFIIGS--DECLKQMYIRLKE- 398 (559)
T ss_pred -cccc--------------Ccc----------chh-------HHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHcc-
Confidence 3100 000 001 1124677777777776655553 1223332222222
Q ss_pred cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHH
Q psy14676 294 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373 (1827)
Q Consensus 294 l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L 373 (1827)
+...|+.-.+++-.+.++++...... ...+|.|++.+.+. +.-..+|+++..+++.+
T Consensus 399 -~~~~We~~EAaLF~l~~~~~~~~~~e--------------------~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~ 455 (559)
T KOG2081|consen 399 -NNASWEEVEAALFILRAVAKNVSPEE--------------------NTIMPEVLKLICNL--PEQAPLRYTSILLLGEY 455 (559)
T ss_pred -CCCchHHHHHHHHHHHHHhccCCccc--------------------cchHHHHHHHHhCC--ccchhHHHHHHHHHHHH
Confidence 45679999999988888875432110 23688888888873 34445999999999998
Q ss_pred HHhC
Q psy14676 374 VQTL 377 (1827)
Q Consensus 374 ~~vl 377 (1827)
.+.+
T Consensus 456 ~ew~ 459 (559)
T KOG2081|consen 456 SEWV 459 (559)
T ss_pred HHHH
Confidence 8876
No 186
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=90.84 E-value=55 Score=41.39 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=50.4
Q ss_pred HHHHHhhccCCCcchHHHHHhhh-cCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHH
Q psy14676 1418 ECLGKLTLIDPSNLLPRLQESLK-SNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKV 1496 (1827)
Q Consensus 1418 ecLGkL~~~~p~~~lP~L~~~l~-~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l 1496 (1827)
|+.+|+-.-+ -.++-.|.+.+. +.++.+=+.+++-|..++.+-|..-+-. +.+ ..
T Consensus 342 EN~~kf~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~------~~l-----------------g~ 397 (429)
T cd00256 342 ENADRLNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVV------EQL-----------------GG 397 (429)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHH------HHc-----------------Cc
Confidence 4445554322 345566666763 4566666666777777766543221100 000 12
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhh
Q psy14676 1497 VKMLLRLLEDKNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1497 ~~~ll~~l~D~~~~Vr~~a~~~Lg~L~ 1523 (1827)
-..++.+|+++|++||..|..|+++|.
T Consensus 398 K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 398 KQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 256788999999999999999999985
No 187
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.81 E-value=13 Score=49.61 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhh-hHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHH
Q psy14676 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQ-YVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVP 1395 (1827)
Q Consensus 1317 l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~-~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~ 1395 (1827)
+...+-.+....+++.+..+..|||++|....-. +.|.+...-......|-.+++||+-+.... +... .+
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~------p~~v---~~ 517 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD------PRKV---QE 517 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC------chHH---HH
Confidence 3344444445566777888889999988765433 444443111112345667788888654311 1111 23
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-cchHHHHHhhh-cCCHHHHHHHHHHHH
Q psy14676 1396 AIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-NLLPRLQESLK-SNSALMRTTVLTAVK 1455 (1827)
Q Consensus 1396 ~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-~~lP~L~~~l~-~~~~~~R~t~l~Alk 1455 (1827)
.+++.+... ..+.++|-+|.-.| ...+|. ..+-.+.+.+. .++.-++..+.+.||
T Consensus 518 ~l~~i~~n~--~e~~EvRiaA~~~l---m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 518 VLLPIYLNR--AEPPEVRMAAVLVL---METKPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred HHHHHHcCC--CCChHHHHHHHHHH---HhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
Confidence 334444442 23344776654332 233454 56677777775 446777776666553
No 188
>KOG2549|consensus
Probab=90.75 E-value=4.3 Score=51.04 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=98.8
Q ss_pred hhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhcc-
Q psy14676 279 IGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLRE- 357 (1827)
Q Consensus 279 l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d- 357 (1827)
+.-||++|...+.. .++..|.+|+.++. . +. .+..++|.+...+.+
T Consensus 205 lQlYy~~It~a~~g----~~~~~r~eAL~sL~----------------T------Ds-------GL~~LlPyFv~fIae~ 251 (576)
T KOG2549|consen 205 LQLYYKEITEACTG----SDEPLRQEALQSLE----------------T------DS-------GLQQLLPYFVTFIAEG 251 (576)
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHhhc----------------c------Cc-------cHHHHHHHHHHHHhhh
Confidence 34588888777765 67888999998872 0 11 133344444444432
Q ss_pred CCHhHHHHHHHHHHHHHHhC------cc-cccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCC
Q psy14676 358 KSIRTRQDCLALLRELVQTL------PG-CLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEY 430 (1827)
Q Consensus 358 ~~~~vR~a~~~ll~~L~~vl------~~-~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~ 430 (1827)
-...+.+.++.+|..+..+. |. .+++|+-+|+|.++.|+=.+ .-+ +..
T Consensus 252 vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk-------~l~---~~p--------------- 306 (576)
T KOG2549|consen 252 VSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSK-------NLC---LRP--------------- 306 (576)
T ss_pred eeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhh-------hcc---CCc---------------
Confidence 22334466777776666554 22 55899999999999997221 111 111
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcch--hhhhHHHHHHHHHHHH
Q psy14676 431 SDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER--EENVKSDIFHAYMALL 493 (1827)
Q Consensus 431 ~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~--~~~Vr~~a~~~l~~L~ 493 (1827)
+.|.+|.+|.-|+..+..+++.++......-..+...+.+.|.|. .+.-.-.++..|.+|.
T Consensus 307 --~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 307 --ELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred --cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 134689999999999999999999666655566777777777666 3344445555555553
No 189
>KOG1517|consensus
Probab=90.64 E-value=7.4 Score=52.14 Aligned_cols=226 Identities=20% Similarity=0.227 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCc
Q psy14676 1234 LSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTS 1313 (1827)
Q Consensus 1234 ~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~ 1313 (1827)
.-|+..|+.+++--+=+++-.+--+++|.+..||..+-.++++...=+-+++....|.+.. .++.|-|..
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~-----dLvKe~g~~----- 557 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA-----DLVKENGYK----- 557 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH-----HHHhccCce-----
Confidence 3345555555553222222222335888889999999999999888888888876665432 122222211
Q ss_pred hhhHHHHHHHhcC---CCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhh
Q psy14676 1314 VADLKQVILNAFT---PTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQL 1390 (1827)
Q Consensus 1314 ~~~l~~~~l~~~~---~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L 1390 (1827)
-|++.+. .=++|-|.-||+-|..+..+. ...|..++.
T Consensus 558 ------YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf---------------~lGQ~acl~------------------- 597 (1387)
T KOG1517|consen 558 ------YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF---------------KLGQKACLN------------------- 597 (1387)
T ss_pred ------eEEEEecCcCCCCHHHHHHHHHHHHHHHccc---------------chhHHHhcc-------------------
Confidence 1111111 124688888888766554321 001111110
Q ss_pred hchHHHHHHHHhhhhcCC-chhHHHHHHHHHHHhhccCCC--------cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhc
Q psy14676 1391 QQFVPAIWAQLFLHCECQ-EEGTRNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461 (1827)
Q Consensus 1391 ~~~~~~i~~~L~~~~~~~-~e~vR~~aAecLGkL~~~~p~--------~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~ 1461 (1827)
..++..-+.++.++ +.-.|.-++.|||+|=.-+++ .---.|...|+++.+.+|.+++.||..++...
T Consensus 598 ----~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 598 ----GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ----ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 11122233333332 233577788888888764432 12245667788899999999999999999864
Q ss_pred CCCCChhHHHHHhhhhhhhhhhcccccChh--HHHHHHH----HHHHhhcCCchHHHHHHHHHhhhhh
Q psy14676 1462 MTSSDKDFRFMATNDLMSELQKDSIKLDDD--SERKVVK----MLLRLLEDKNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1462 ~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~--~~~~l~~----~ll~~l~D~~~~Vr~~a~~~Lg~L~ 1523 (1827)
.+..++.... .+ ..+.++.. ..++.++ .++.+++|..+-||...+.+|..++
T Consensus 674 ~d~fde~~~~--~~--------~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 674 SDNFDEQTLV--VE--------EEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred ccccchhhhh--hh--------hhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3333332110 00 00111110 1123333 6677889999989988888877765
No 190
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.60 E-value=8.5 Score=51.80 Aligned_cols=224 Identities=19% Similarity=0.202 Sum_probs=116.8
Q ss_pred hhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy14676 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIIC 1164 (1827)
Q Consensus 1085 ~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~ 1164 (1827)
.++..+...+.++...+...++..+..|++.++.+. ...+..++..+ ...- -+..+...+-+.+.
T Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~-------~~~L~~l~~~~----~~~~----~~~~~r~~~lDal~ 389 (618)
T PF01347_consen 325 ELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLS-------YEDLEELYKQL----KSKS----KKEQARKIFLDALP 389 (618)
T ss_dssp HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS--------HHHHHHHHHHH----TTS-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCC-------HHHHHHHHHHH----Hhhc----cHHHHHHHHHHHHH
Confidence 344444444433334455566667888888877421 13344444433 2110 12223333334444
Q ss_pred HhhhhhhhhhhhhHHHHHHhhhhh-hhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhc----chhHHHHHHHHHH
Q psy14676 1165 NLGDYLKSELPVCLPILLDRLRNE-ITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLR----KNQRALKLSTLLL 1239 (1827)
Q Consensus 1165 ~~g~~l~~~l~~lL~~Ll~~L~~e-~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lr----k~~r~lR~~al~a 1239 (1827)
.+|- +..+..+.+.+.+. .+-..|++.+..+....... -.+.+..+..+++ ++++.+|.+++-+
T Consensus 390 ~aGT------~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~ 458 (618)
T PF01347_consen 390 QAGT------NPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLS 458 (618)
T ss_dssp HH-S------HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHH
T ss_pred HcCC------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHH
Confidence 3442 44555666666553 33455666666665432111 1334444444443 3456799999999
Q ss_pred HHHHHHhCCCC-------------cChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcc
Q psy14676 1240 LDTLLVNYPSA-------------ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIG 1306 (1827)
Q Consensus 1240 L~~L~~~~~~~-------------l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG 1306 (1827)
++.++..+... +...+++.+...+....+..|.+-+..++.+|+.+ |
T Consensus 459 ~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--------------------g 518 (618)
T PF01347_consen 459 LGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--------------------G 518 (618)
T ss_dssp HHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------T
T ss_pred HHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--------------------C
Confidence 99998843211 23345555666666556666777777766666653 2
Q ss_pred cccCCCchhhHHHHHHHhcCCC---CHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc
Q psy14676 1307 RHTDLTSVADLKQVILNAFTPT---SEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361 (1827)
Q Consensus 1307 ~~~~~~~~~~l~~~~l~~~~~~---s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~ 1361 (1827)
.+..++.+...+.+. +..+|.+|.+||.+++........+.++....+
T Consensus 519 -------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n 569 (618)
T PF01347_consen 519 -------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN 569 (618)
T ss_dssp --------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-
T ss_pred -------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC
Confidence 134566666666655 788999999999987655544455555554444
No 191
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.85 E-value=7.4 Score=52.40 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=81.8
Q ss_pred CChhHHHHHHHHHHHHHHhC-CCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhh
Q psy14676 1270 SDLHIAQLTLTLLTSIAKIQ-PNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNL 1348 (1827)
Q Consensus 1270 ~D~~l~~~al~~L~~l~~~~-~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l 1348 (1827)
.+..++..++..++.++... ..... . ..+..-...+.-...+.+...+-.+....+++.+..+..|||++|...
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~---~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~- 521 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDS---A-EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPE- 521 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT---------------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-
T ss_pred CChhHHHHHHHHHHHHhCceeecccc---c-ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCch-
Confidence 56678888888888877631 11000 0 000000000000112345555555556778899999999999999643
Q ss_pred hhhHHHHHHhhhcC----chhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy14676 1349 QQYVPFVLKEIENQ----PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLT 1424 (1827)
Q Consensus 1349 ~~~LP~Il~~i~~~----~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~ 1424 (1827)
.+|.++..+.+. ...|..+++||+-+.... +. ...+.+|+.+... ..+.++|-+|.-. |.
T Consensus 522 --~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~------~~---~v~~~l~~I~~n~--~e~~EvRiaA~~~---lm 585 (618)
T PF01347_consen 522 --SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC------PE---KVREILLPIFMNT--TEDPEVRIAAYLI---LM 585 (618)
T ss_dssp --GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-------HH---HHHHHHHHHHH-T--TS-HHHHHHHHHH---HH
T ss_pred --hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC------cH---HHHHHHHHHhcCC--CCChhHHHHHHHH---HH
Confidence 444555544442 234555666665442210 11 1223344444442 2334477766433 33
Q ss_pred ccCCC-cchHHHHHhhh-cCCHHHHHHHHHHHH
Q psy14676 1425 LIDPS-NLLPRLQESLK-SNSALMRTTVLTAVK 1455 (1827)
Q Consensus 1425 ~~~p~-~~lP~L~~~l~-~~~~~~R~t~l~Alk 1455 (1827)
..+|. ..+-.+...+. .++..++..+.+.||
T Consensus 586 ~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 586 RCNPSPSVLQRIAQSLWNEPSNQVASFVYSHLK 618 (618)
T ss_dssp HT---HHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHhhCchHHHHHHHHHhcC
Confidence 34454 56777777775 457888888877765
No 192
>KOG2137|consensus
Probab=89.66 E-value=3.4 Score=53.61 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=87.3
Q ss_pred CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh-hcCC
Q psy14676 1429 SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL-LEDK 1507 (1827)
Q Consensus 1429 ~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~-l~D~ 1507 (1827)
+.++|.|...+++.+..+-..+++.+-.+. +.+|-.. +.+.|+|.+..+ ++..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~----e~iD~~~----------------------vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVA----ESIDVPF----------------------VKQAILPRLKNLAFKTT 441 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHH----HhccHHH----------------------HHHHHHHHhhcchhccc
Confidence 356788888888888888888887777665 2333211 235677887764 6888
Q ss_pred chHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCC
Q psy14676 1508 NGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSN 1575 (1827)
Q Consensus 1508 ~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~l 1575 (1827)
+..|+.|++-|+|.++++++.-.+.+.+.++++.+..+. +++...-+.....++-.+|+.
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~d--------p~iv~~~~~i~~~l~~~~~~g 501 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRD--------PAIVMGFLRIYEALALIIYSG 501 (700)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999888776433 377777788888888888884
No 193
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.65 E-value=35 Score=39.75 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK 117 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~ 117 (1827)
|+|-|+-.+.+..+++.+...+..|..++.+-- ...+.++..+....+.+....+.-+...+..+...- +..| +
T Consensus 1 ll~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f-~ 74 (234)
T PF12530_consen 1 LLPLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHF-P 74 (234)
T ss_pred ChHHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHH-H
Confidence 457777767777799999999999999987752 123456666666666666666666666666666543 3333 2
Q ss_pred HHHHHHHh----c----c-CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc-ccCchHHHHHHHHHHHHHH
Q psy14676 118 LIDFLLEG----L----T-TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS-REEDDELREFCLQACEAFV 187 (1827)
Q Consensus 118 l~~~ll~~----L----~-~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~-~~~~delRe~al~ale~~~ 187 (1827)
.+..++.. . . .+...+..-....++..+|...|+ |-.++++.+.+++ +++++..+..|++++..++
T Consensus 75 ~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 75 FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33433433 1 1 122233344444577888888887 5677888888888 6667777767766665555
No 194
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=5.9 Score=49.43 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChH
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPL 337 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1827)
.-||.+.|-+|+-.....+. +.....|-....+...-||..|+.+.+-++-|..
T Consensus 600 ~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n-------------------- 653 (926)
T COG5116 600 FHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN-------------------- 653 (926)
T ss_pred hhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC--------------------
Confidence 36888888888765554443 2223334444577888899999999988885532
Q ss_pred hhHHhhhHHHHHHHHHHhccCCH
Q psy14676 338 CLLSTQVPSLVKALQCQLREKSI 360 (1827)
Q Consensus 338 ~~l~~~lp~Iv~~l~~~L~d~~~ 360 (1827)
..|.+++..|.+.+.+...|++.
T Consensus 654 ~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 654 PELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred cccChhHHHHHHHHHHHHhhhhH
Confidence 33566777888888888777764
No 195
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.29 E-value=19 Score=43.98 Aligned_cols=151 Identities=17% Similarity=0.261 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH-HHHHHHHHHHHhCc
Q psy14676 300 NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ-DCLALLRELVQTLP 378 (1827)
Q Consensus 300 ~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~-a~~~ll~~L~~vl~ 378 (1827)
.+|.+++.-+...++.. +.........+|.++..++.--+...|..|. -.++++..+...++
T Consensus 42 ~iKkeIL~Li~t~i~~~-----------------~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~ 104 (319)
T PF08767_consen 42 TIKKEILKLIETFISKA-----------------EDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLG 104 (319)
T ss_dssp HHHHHHHHHHHHHHHT------------------S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcc-----------------CCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHH
Confidence 57788888787777542 1133456678899999888888888889998 88899999999999
Q ss_pred ccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh
Q psy14676 379 GCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL 458 (1827)
Q Consensus 379 ~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~ 458 (1827)
..+.+.++.++..+..+.-.= =. +|.++ -..+|..-.+.+..+.+++...
T Consensus 105 ~~~~~~v~~I~~~vf~~Tl~M--------------I~---------~d~~~-------yPe~r~~ff~LL~~i~~~~f~~ 154 (319)
T PF08767_consen 105 ELIQPQVPQILEAVFECTLPM--------------IN---------KDFEE-------YPEHRVNFFKLLRAINEHCFPA 154 (319)
T ss_dssp GGCCCCHHHHHHHHHHHHHHH--------------HS---------STSSS-------SHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhhhhHHHHHHHHHHHHHHH--------------HH---------hhhhh-------ChHHHHHHHHHHHHHHHHhHHH
Confidence 988899998888876553110 00 00011 2358889999999999988754
Q ss_pred hh----hhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 459 IG----DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 459 f~----~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
|. +.|..++..++-.++...++|...+++.+.++++...
T Consensus 155 l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 155 LLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 43 3677788888888899999999999999999998765
No 196
>KOG1293|consensus
Probab=89.14 E-value=84 Score=40.94 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=109.3
Q ss_pred hcCCCccccccchHHHHHHHhhhccccchhhHHHH-----HHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccc
Q psy14676 554 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKV-----VKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRI 628 (1827)
Q Consensus 554 ~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i-----~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~ 628 (1827)
++..++..|+.++++..-...-+.+.. .....++ ...+....-=.|-+++..|.-|+..+.+.+......+=
T Consensus 340 l~a~~~~~~~i~l~e~~i~~~~~~~~~-i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~-- 416 (678)
T KOG1293|consen 340 LAASDEKYRLILLNETLILNHLEYGLE-ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK-- 416 (678)
T ss_pred HhhcchhhhHHHhhhhhhhhhhhhhcc-hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc--
Confidence 567788899888876543322222111 1111122 22222222223456777776666655554443222211
Q ss_pred cccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhcc
Q psy14676 629 DLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKI 708 (1827)
Q Consensus 629 dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~ 708 (1827)
-..+++.|.+.|.++....+-+++.++..++-.|++.=....-.+.++-+-.+..+.|..+++-++.++-.++-.
T Consensus 417 -----~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 417 -----RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred -----cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 234567777888999999999999999999999986433334446667777777888999999999999887754
Q ss_pred CCCccchhhhhhhhHHHhh-hhcccc--cchhhhhhHHHH
Q psy14676 709 QPNALVEPAAASILPQVLQ-IAKSPL--LQGAALTSMLEF 745 (1827)
Q Consensus 709 ~~~~~~~~~~~~llp~ll~-l~~s~~--~~~~al~~l~~~ 745 (1827)
........-+.++--..+. +...|. +|++++.=|.++
T Consensus 492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3222222233455555544 444333 467777655565
No 197
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.72 E-value=6.7 Score=51.05 Aligned_cols=176 Identities=14% Similarity=0.145 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHH-HH-----hcCCCHHHHHHHHHHHHHHHhhccCCCCchhH
Q psy14676 5 KEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLST-AI-----EKQEDVSVQLEALDILSDLLSRFGALLPSFHF 78 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~-~l-----~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~ 78 (1827)
..++-+.+...||.+...+.... +...|.--.+. ++ ....++.+|...+..|..=.. .. ...+
T Consensus 250 ~~~V~~~ae~~LKr~~~~~ed~~------~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~--Aa---~~~~ 318 (501)
T PF13001_consen 250 NSSVSDRAEDLLKRLSVSLEDPD------LVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI--AA---TSFP 318 (501)
T ss_pred cchHHHHHHHHHhhcCCCCCCHH------HHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH--HH---hCCc
Confidence 45678888888988887765432 33333333221 11 012367788766666654211 11 1345
Q ss_pred HHHHHHhhhcCCC--CHHHHHHHHHHH---HHHHHhhchhHHHHHHHHHHHhccC-----------CCCHHHHHHHHHHH
Q psy14676 79 VILTALLPQLSSP--RQAVRKRTIVAL---SHLVMSCNLQLYTKLIDFLLEGLTT-----------NKSTSTNRTYIQCF 142 (1827)
Q Consensus 79 ~il~~ll~~L~~~--~~~VRk~Ai~aL---~~l~~~~~~~~~~~l~~~ll~~L~~-----------~~~~~~r~~ai~~l 142 (1827)
.++..+..+|.++ +..+|..++.-+ ......+++..+..+-+.+..++.. ..+...|..+.+++
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 6888888999877 679999999999 8999999988877666666665411 23467899999999
Q ss_pred HHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 143 AAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 143 ~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
|.+++..+..|..-+. ++..++..+.++.+|+|-..-+|+.+|...++.
T Consensus 399 G~L~~~~p~l~~~d~~-li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 399 GLLAKRAPSLFSKDLS-LIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHccCcccccccHH-HHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 9999999998865544 777888888889999998888888888876543
No 198
>KOG2022|consensus
Probab=88.64 E-value=1e+02 Score=41.41 Aligned_cols=369 Identities=14% Similarity=0.135 Sum_probs=179.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhhhcC---CCC-hhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHh-hcccchHHHH
Q psy14676 841 LSHLVMSCNLQLYTKLIDFLLEGLTT---NKS-TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY-SREEDDELRE 915 (1827)
Q Consensus 841 L~~l~~~~~~~~~~~l~~~l~~~l~~---~~~-~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~-l~d~~~~vre 915 (1827)
+-..-..+++++++-+...+-..+.. +|. ..+-++.+..|..+++..|..-.+.+++++...... ++.-++.+-.
T Consensus 448 ~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~ 527 (982)
T KOG2022|consen 448 LMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLS 527 (982)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHH
Confidence 33334456677777666666655544 443 356689999999999999988777766655543321 1111344444
Q ss_pred HHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhh
Q psy14676 916 FCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQ 995 (1827)
Q Consensus 916 ~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~ 995 (1827)
++.+.++.+.++.+. .|-.+.
T Consensus 528 Tss~~igs~s~~l~e-----------------------------------------------------------~P~~ln 548 (982)
T KOG2022|consen 528 TSSDLIGSLSNWLGE-----------------------------------------------------------HPMYLN 548 (982)
T ss_pred HHHHHHHHHHHHHhc-----------------------------------------------------------CCcccC
Confidence 444444333322111 112222
Q ss_pred hhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHH-------HHHHhccC--ChhhHHHHHHHHHHHHHhcc
Q psy14676 996 QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPR-------LQESLKSN--SALMRTTHQSNQTFNVIIQR 1066 (1827)
Q Consensus 996 ~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~-------L~~~L~s~--~~~~R~~a~~~L~~l~~~~~ 1066 (1827)
+++|.+++.| +..+++++ +...|.++++.-+..+.|. ..+.+... ....|...+..+|++.+...
T Consensus 549 ~sl~~L~~~L----h~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~ 622 (982)
T KOG2022|consen 549 PSLPLLFQGL----HNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK 622 (982)
T ss_pred chHHHHHHHh----cCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc
Confidence 3333333322 22222222 2233444544433333332 22333222 35678888888887666543
Q ss_pred ccccccccchhhhhhhhhhhhHHHHHhhc--------CCchhhHH-HHHHHHHHHHHHhccCC---CCCC--C-------
Q psy14676 1067 NDIHNHNEETSFIYSFYYFLLSPVIASVG--------DNFYKITA-EALLVLQQFVKVIRPLT---SPSS--Y------- 1125 (1827)
Q Consensus 1067 ~~l~~~~~~~~~~~~~l~~Lip~l~~~l~--------D~~~~V~~-eAl~~l~~lv~~l~~~~---~~~~--~------- 1125 (1827)
| ++...|+..|+..+++-++ ++..+.+. --+.+++.|+..+.... .+.. .
T Consensus 623 ----p-----Ee~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq 693 (982)
T KOG2022|consen 623 ----P-----EEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQ 693 (982)
T ss_pred ----H-----HhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhcccccc
Confidence 2 2333446666666654442 33333333 33556777777654321 0000 0
Q ss_pred -CcchhHHHHHHH---HHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhHHHHHHhhhhhhhHHHHHH-HHH
Q psy14676 1126 -DFAPFTSDIYQC---TLVRLKAADIDQEVKERAISCMGQIICNLGDYL-KSELPVCLPILLDRLRNEITRLTTVK-ALT 1199 (1827)
Q Consensus 1126 -~~~~~l~~l~~~---ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l-~~~l~~lL~~Ll~~L~~e~tR~~av~-al~ 1199 (1827)
.....+.++++. +++... .+..|-+.++..++.=+...++.+ .|.++.+.+-++....+. .|+- .++
T Consensus 694 ~~il~v~~k~i~~~~kv~s~~~---~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~----~a~tl~l~ 766 (982)
T KOG2022|consen 694 FPILQVLQKAIPVFEKVLSMWL---GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSC----LAVTLSLI 766 (982)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccch----HHHHHHHH
Confidence 111223334333 333222 234466777666665555455444 455666555555432221 1111 111
Q ss_pred H---HhcCCC-------ccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcCh---HhHHHHHHHhhhh
Q psy14676 1200 K---IAASPL-------RIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIST---EMLNKVTVELAPL 1266 (1827)
Q Consensus 1200 ~---ia~~~~-------~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~---~~~~~ll~~L~~l 1266 (1827)
. ++.+.. ..++.......+-.+-+--=.|+.+.-..-+..+...++..+.-+.+ ++-.-+++....+
T Consensus 767 ~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~l 846 (982)
T KOG2022|consen 767 AACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFIL 846 (982)
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHh
Confidence 1 111110 11111112221111111111245566667777888888877765433 4445566677788
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCC
Q psy14676 1267 VSESDLHIAQLTLTLLTSIAKIQP 1290 (1827)
Q Consensus 1267 l~d~D~~l~~~al~~L~~l~~~~~ 1290 (1827)
+.....-.-.++...++++.....
T Consensus 847 l~~pE~~~i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 847 LNSPEPTTIRAASQFLTALATYAT 870 (982)
T ss_pred cCCCccHHHHHHHHHHHHHHhhcc
Confidence 888777777777888888776543
No 199
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.57 E-value=92 Score=40.70 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=66.6
Q ss_pred hhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14676 1080 YSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCM 1159 (1827)
Q Consensus 1080 ~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~al 1159 (1827)
-..+..++|+++..+..++..||...+..++++-+.+++. ..++==+. .++......+...-||..++--+
T Consensus 18 e~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~-----~~I~LPv~----~Ll~q~~~~~~s~~vrnfsliyi 88 (501)
T PF13001_consen 18 EQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSN-----PSIQLPVE----ALLKQYKEPSDSSFVRNFSLIYI 88 (501)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccC-----CcCcCcHH----HHHHHHhCCCCchHHHHHHHHHH
Confidence 3448899999999999999999999999999999888741 22221133 34445554455677888888666
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhh
Q psy14676 1160 GQIICNLGDYLKSELPVCLPILLDRLR 1186 (1827)
Q Consensus 1160 g~l~~~~g~~l~~~l~~lL~~Ll~~L~ 1186 (1827)
..=+.++.. ++...++|.+++.+.
T Consensus 89 ~~g~~Rl~~---~e~~~llP~ll~~is 112 (501)
T PF13001_consen 89 EMGFDRLDD---EERRELLPSLLKGIS 112 (501)
T ss_pred HHhhhcCCH---HHHHHHHHHHHHhhc
Confidence 554444322 456778888888886
No 200
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.29 E-value=3.3 Score=40.55 Aligned_cols=79 Identities=19% Similarity=0.092 Sum_probs=62.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy14676 43 STAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFL 122 (1827)
Q Consensus 43 l~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~l 122 (1827)
+..+. ++.+.+|..++..|..+++.-. .-....+.++..++..|+|+++-|=-.|+.+++.++...++..+..+++.+
T Consensus 9 l~~L~-dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~y 86 (92)
T PF10363_consen 9 LSDLN-DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDEY 86 (92)
T ss_pred HHHcc-CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 34444 4578899999999999999876 111245789999999999999999999999999999999887776666555
Q ss_pred H
Q psy14676 123 L 123 (1827)
Q Consensus 123 l 123 (1827)
.
T Consensus 87 ~ 87 (92)
T PF10363_consen 87 A 87 (92)
T ss_pred h
Confidence 4
No 201
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.19 E-value=18 Score=45.92 Aligned_cols=197 Identities=17% Similarity=0.184 Sum_probs=126.4
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhH-HHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHF-VIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~-~il 81 (1827)
|.+..-|+..-.-|..+.+..+... .-+++.+...+.+.+........-.+.|.+++.+...|..-+...|. -+.
T Consensus 144 S~D~rER~~lk~~l~~iy~k~~~~r----~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~ 219 (409)
T PF01603_consen 144 SPDPRERDYLKTILHRIYGKFPNLR----SFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLR 219 (409)
T ss_dssp SSTHHHHHHHHHHHHHHHHH-TTTH----HHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 4555688888888999998888754 35667777777777765556666789999999999999866666555 555
Q ss_pred HHHhhhcCCCCH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHHhHHH
Q psy14676 82 TALLPQLSSPRQ-AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAEHIER 159 (1827)
Q Consensus 82 ~~ll~~L~~~~~-~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p~l~~ 159 (1827)
..++|....+.. .....=..|+..+++.= +.+...++..++..--. .+....-..+.-+..+.+..+ ..|.+....
T Consensus 220 ~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~-t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 220 KVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPK-TNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp HTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-S-S-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCC-CCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 778888877653 44555566777777642 33444455555554322 234445556677777777554 678888888
Q ss_pred HHHHHHhhcccCchHHHHHHHHHH--HHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 160 VMPLILKYSREEDDELREFCLQAC--EAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 160 i~p~l~~~~~~~~delRe~al~al--e~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
++..+-+.++.+.-.|-|.|+..+ +.++.. +..+-..++|.++..+
T Consensus 298 lf~~la~ci~S~h~qVAErAl~~w~n~~~~~l----i~~~~~~i~p~i~~~L 345 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERALYFWNNEYFLSL----ISQNSRVILPIIFPAL 345 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHH----HHCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHH----HHhChHHHHHHHHHHH
Confidence 888888888888888888777654 333332 2344556777777665
No 202
>KOG1789|consensus
Probab=88.11 E-value=1.1e+02 Score=41.52 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCC-CCHhHHHHHHHHHhh-----hhhhh
Q psy14676 1274 IAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTP-TSEEVKSAASYTLGS-----IAVGN 1347 (1827)
Q Consensus 1274 l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~-~s~eVr~aAa~aLG~-----i~~~~ 1347 (1827)
-.+.++.+|..+...+|+ +++.+|.=.+.+ ..++.|...+.. ....+..-|..-+.. -++.+
T Consensus 1741 ~v~m~LtAL~Nli~~nPd------lasvfgSe~~li------g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~ 1808 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPD------LASVFGSEILLI------GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTD 1808 (2235)
T ss_pred HHHHHHHHHHHHHhhCcc------hhhhccchhhhh------cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHH
Confidence 346678888888888875 333333211111 122333333332 233444444333322 12233
Q ss_pred hh--hhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy14676 1348 LQ--QYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLGKLT 1424 (1827)
Q Consensus 1348 l~--~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~ 1424 (1827)
+. ..|-.+++.+.+.|+.+..+|+.|..+.+ ..+.|.+.++. -+..|.+.+ |.++....|..+|+-+|||.
T Consensus 1809 ~a~~~vL~~LL~lLHS~PS~R~~vL~vLYAL~S---~~~i~keA~~hg~l~yil~~~---c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1809 LATCNVLTTLLTLLHSQPSMRARVLDVLYALSS---NGQIGKEALEHGGLMYILSIL---CLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHhhhHHHHHHHHHhcChHHHHHHHHHHHHHhc---CcHHHHHHHhcCchhhhhHHH---hccCcHHHHHHHHHHHHHhh
Confidence 32 26677788888888888888888877754 22233333332 222233322 34666779999999999998
Q ss_pred c---cCCC------cchHHHHHhhhcCCHHHHHHHHHHHHHH
Q psy14676 1425 L---IDPS------NLLPRLQESLKSNSALMRTTVLTAVKFT 1457 (1827)
Q Consensus 1425 ~---~~p~------~~lP~L~~~l~~~~~~~R~t~l~Alk~~ 1457 (1827)
. +.|+ .++|...--.-..+| .++++++..+
T Consensus 1883 Adkl~GPrV~ITL~kFLP~~f~d~~RD~P---EAaVH~fE~T 1921 (2235)
T KOG1789|consen 1883 ADKLTGPRVTITLIKFLPEIFADSLRDSP---EAAVHMFEST 1921 (2235)
T ss_pred hccccCCceeeehHHhchHHHHHHHhcCH---HHHHHHHhcc
Confidence 5 4454 344433222223344 3456665544
No 203
>KOG1293|consensus
Probab=87.73 E-value=1e+02 Score=40.21 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=94.2
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChH-hHHHHHHHh
Q psy14676 1185 LRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTE-MLNKVTVEL 1263 (1827)
Q Consensus 1185 L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~-~~~~ll~~L 1263 (1827)
+++.+.+.+|.-.+-.+..+.-..+-++-..++...+...+.+.+-.+..+++.++..++..+++- ... ...+.+..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-KSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-HHHHHHcCcHHHH
Confidence 345555777766666555431111111223456777778888888899999999999999987752 111 233455666
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHH-HHHhcCCCCHhHHHHHHHHHhh
Q psy14676 1264 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQV-ILNAFTPTSEEVKSAASYTLGS 1342 (1827)
Q Consensus 1264 ~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~-~l~~~~~~s~eVr~aAa~aLG~ 1342 (1827)
...+++.|..+++.++.+|..++-.+..... . .+...+..- +....+|+..+|.+.+.+-|-+
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k-------------~---~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEK-------------F---QLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHH-------------H---HHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7889999999999999999887764432110 0 112233333 3344467888999999988888
Q ss_pred hhhh
Q psy14676 1343 IAVG 1346 (1827)
Q Consensus 1343 i~~~ 1346 (1827)
.-.+
T Consensus 531 l~c~ 534 (678)
T KOG1293|consen 531 LTCN 534 (678)
T ss_pred hhcC
Confidence 6554
No 204
>KOG2149|consensus
Probab=87.71 E-value=4.3 Score=49.43 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=102.5
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhcc
Q psy14676 1039 LQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRP 1118 (1827)
Q Consensus 1039 L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~ 1118 (1827)
+...++.-+..+|..|+..+..+..+.+..+..| +..+++.+...+.|+.+.||....+.+..++-...+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~----------~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~ 132 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH----------LYALLQKLRELILDDDSLVRDALYQLLDSLILPACK 132 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH----------HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch
Confidence 3444577789999999999995555455555555 778899999999999999999999988887765543
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhh
Q psy14676 1119 LTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLR 1186 (1827)
Q Consensus 1119 ~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~ 1186 (1827)
.+..|++.-+++.+...+. ...+++|+-+...+..++...++.+..+...+++.+.+.+.
T Consensus 133 ------e~~sp~~~l~~~yi~~AMT--hit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 133 ------EDQSPMVSLLMPYISSAMT--HITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred ------hhhcchHHHHHHHHHHHHh--hccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 4477888888888888877 78899999999999999999988777665556666655543
No 205
>KOG0946|consensus
Probab=87.55 E-value=12 Score=49.04 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhh---HHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDM---YRLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~---~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
+.||+.+.+.|.++.+++|..+.+. ++.-+..|+..+.|..|-+|-+++.-+.++.+
T Consensus 136 F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 136 FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 4799999999999999999655542 33445567778899999999999999999885
No 206
>KOG2137|consensus
Probab=87.40 E-value=14 Score=48.25 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=88.6
Q ss_pred hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 77 HFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL-TTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 77 ~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L-~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
...|++.+...+.+.+..++.+++..+..+++.+.-....+-+-.-+.+| .+.....++..++-|++.++......-
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~-- 464 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAA-- 464 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHH--
Confidence 45788888888999999999999999999999998555554444444444 234567789999999999995444322
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC--ccc--cchHHHHHHHH
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK--EIT--PHIQSITELCL 206 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~--e~~--p~l~~ii~~ll 206 (1827)
-++.+.|++.. .+..++++.-.++...+.+...-+. ++. ..+|.++++..
T Consensus 465 v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 465 VLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred hHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 35666666555 4456888887888888888776655 332 23444555443
No 207
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.39 E-value=2.8 Score=40.99 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=62.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1433 PRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1433 P~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
....+.+.++.+-+|+-.+.-++.++.... . +.. ....++..++..++|+|+.|=
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~-~~~----------------------~~~~il~l~l~~L~d~DsyVY 60 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--E-PVI----------------------DIPKILDLFLSQLKDEDSYVY 60 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--c-chh----------------------hHHHHHHHHHHHcCCCCchHH
Confidence 344566778888899999999999997654 1 111 124678999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHH
Q psy14676 1513 NLAVKCLGPLVNKVKEFQVETIVDAL 1538 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~~~~~~v~~l 1538 (1827)
-||+++|..|+...+...+..+++..
T Consensus 61 L~aI~~L~~La~~~p~~vl~~L~~~y 86 (92)
T PF10363_consen 61 LNAIKGLAALADRHPDEVLPILLDEY 86 (92)
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 99999999999888776666666544
No 208
>KOG2005|consensus
Probab=86.95 E-value=15 Score=47.11 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=39.9
Q ss_pred hhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc
Q psy14676 1315 ADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361 (1827)
Q Consensus 1315 ~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~ 1361 (1827)
-.++.++-+...|...+|-.+|.+++|-+|+|....-+..++.++.+
T Consensus 674 ~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaS 720 (878)
T KOG2005|consen 674 VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLAS 720 (878)
T ss_pred chHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHH
Confidence 36889999999999999999999999999999877777777776543
No 209
>KOG2160|consensus
Probab=86.72 E-value=20 Score=43.30 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=94.1
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhH-HHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHF-VIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~-~il 81 (1827)
++...+|.-++-.+.|++.+=|..- ...+=..-+++|+..+.++.+..+|..||++++.++.++.+....+.. .=.
T Consensus 135 ~~~~~lR~~Aa~Vigt~~qNNP~~Q---e~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 135 NSDAELRELAARVIGTAVQNNPKSQ---EQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHH---HHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 3456799999999999998888632 112223356788888887778889999999999999999886544321 125
Q ss_pred HHHhhhcCC--CCHHHHHHHHHHHHHHHHhhchh--HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy14676 82 TALLPQLSS--PRQAVRKRTIVALSHLVMSCNLQ--LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 82 ~~ll~~L~~--~~~~VRk~Ai~aL~~l~~~~~~~--~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~ 147 (1827)
..|.+.|++ .+...+.+|+.-++.+...-... .+ ...++..+..+....+..++..++.++-+...
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 566777877 56788888888888888754321 11 12234444444333344566666666555554
No 210
>KOG0803|consensus
Probab=86.28 E-value=54 Score=46.78 Aligned_cols=206 Identities=12% Similarity=0.148 Sum_probs=132.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH---HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK---LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~---l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
.-+..++..|.--++..|.+|...++.++.....+.... ....+...|..+.+..+|....+.+..+...+.+++.|
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345566777777889999999999999998776554433 24555556666788999999999999999999999999
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-----hHHHHHHHHHHh-ccCCCCCcccccccCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-----IQSITELCLTYI-TYDPNYNYEDEEEGLGGEGG 229 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-----l~~ii~~ll~~l-~~dpn~~~~ddd~~~~~~~~ 229 (1827)
|+..++|..+-...+.+-.+-+.| ..+|-...+++-.++ -+.+.+.+.+.+ +..|.- +
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa---~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~s-l------------ 184 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAA---KASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDS-L------------ 184 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHH---HHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccc-c------------
Confidence 999999999887665555554444 444444444443333 245555555542 222110 0
Q ss_pred CCCCCCcccCCCCCCCCCCCCC---CCccchhhHHHHHHHHHHHHHHHcCC--chhhhHH---hh--hHHHHhhcCCCCH
Q psy14676 230 GEGMDTEEEDGEDEGEDDNEYS---DDDDMSWKVRRAAAKCLEAIIATRRD--LIGDMYR---LV--SPPLIARFKEREE 299 (1827)
Q Consensus 230 ~~~~d~~~~d~dde~e~~~e~s---dddD~sWkVRraAak~L~~l~~~~~~--~l~~~~~---~v--~p~L~~~l~e~ee 299 (1827)
++..|. +-+-+.-||-+++..++-.+....++ .+..... .+ ...+-+.+++..+
T Consensus 185 ----------------Sd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~ 248 (1312)
T KOG0803|consen 185 ----------------SDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSP 248 (1312)
T ss_pred ----------------chhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCc
Confidence 000010 01223456777788888887765553 1111111 11 2234466788899
Q ss_pred hHHHHHHHHHHHHHhhh
Q psy14676 300 NVKSDIFHAYMALLKGT 316 (1827)
Q Consensus 300 ~VR~aa~~al~~ll~~~ 316 (1827)
.+|.+....+..++.-.
T Consensus 249 ~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 249 SIKVALLELLLSLIDDI 265 (1312)
T ss_pred chhHHHHHHHHHHHhhh
Confidence 99999999888887543
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=12 Score=47.01 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=77.7
Q ss_pred cCCchhHHHHHHHHHHHhhccCCCcchHHHHHhh-hcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhc
Q psy14676 1406 ECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL-KSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKD 1484 (1827)
Q Consensus 1406 ~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l-~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~ 1484 (1827)
.+.+++||++|-.+||-.+.-++..+ |...+.| .+-++.+|..+..|+.-.+...+..
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~~~l-v~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------------------- 620 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDRDLL-VGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------------------- 620 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCcchh-hHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--------------------
Confidence 46678899999999999888777666 4555555 5779999999999999888765421
Q ss_pred ccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhh---hHHHHHHHHHhhhc
Q psy14676 1485 SIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEF---QVETIVDALCSNMV 1543 (1827)
Q Consensus 1485 ~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~---~~~~~v~~l~~~l~ 1543 (1827)
.-+..+-.++.|++..||++|.-++|-+.-..+.+ .++.+++.+.+.+.
T Consensus 621 ----------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 621 ----------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred ----------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHh
Confidence 12355556789999999999999999877433322 45666666665554
No 212
>KOG2160|consensus
Probab=85.05 E-value=14 Score=44.71 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=92.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhh
Q psy14676 1139 LVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTD 1216 (1827)
Q Consensus 1139 l~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~ 1216 (1827)
...+..+..+.+=|+.|+.-+..+++.......=.--..+..++..+++..+ |..|++.+|+++...++.+-.-+=..
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~ 166 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG 166 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc
Confidence 3344445678888999999999999887432111111234444447776655 99999999999986443221111112
Q ss_pred hHhhhhhhhcch-hHHHHHHHHHHHHHHHHhCCCCcChH-hHHHHHHHhhhhcCC--CChhHHHHHHHHHHHHHHhCC
Q psy14676 1217 GIPILGSFLRKN-QRALKLSTLLLLDTLLVNYPSAISTE-MLNKVTVELAPLVSE--SDLHIAQLTLTLLTSIAKIQP 1290 (1827)
Q Consensus 1217 ~l~~L~~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~-~~~~ll~~L~~ll~d--~D~~l~~~al~~L~~l~~~~~ 1290 (1827)
.++.|...+.++ .-++|..++.|++.++.+.......- -+.+ ...|.+.+.. .+..+..-++..++.+.+..+
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 344444444433 46788999999999999876542211 0011 2233455555 566677778888888887554
No 213
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.99 E-value=13 Score=45.33 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchh-------HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh
Q psy14676 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFH-------FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ 113 (1827)
Q Consensus 41 ~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~-------~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~ 113 (1827)
.|++.+ ..+.++..-.+..+++++..-+....-.+ ......++..+++++..++..|...+..++...+..
T Consensus 62 ~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 62 NLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 444444 13678889999999999887663221111 136677778888899999999999999999988765
Q ss_pred HHH---HHHHHHHHhccCC---CCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc-----ccCchHHHHHHHHH
Q psy14676 114 LYT---KLIDFLLEGLTTN---KSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS-----REEDDELREFCLQA 182 (1827)
Q Consensus 114 ~~~---~l~~~ll~~L~~~---~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~-----~~~~delRe~al~a 182 (1827)
... ..++.++..|.+. ++...+..++++++.+.+.-..+-.=.-.+.++.+...+ ......+. ...++
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q-l~Y~~ 218 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ-LQYQA 218 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh-HHHHH
Confidence 544 6677777776542 223456889999999986554331111144555555554 12222222 22332
Q ss_pred -HHHHHHhCCCccccch--HHHHHHHHHHhcc
Q psy14676 183 -CEAFVQRCPKEITPHI--QSITELCLTYITY 211 (1827)
Q Consensus 183 -le~~~~~~p~e~~p~l--~~ii~~ll~~l~~ 211 (1827)
+-.|.-...+++...+ ..+++.+.+.++.
T Consensus 219 ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~ 250 (312)
T PF03224_consen 219 LLCLWLLSFEPEIAEELNKKYLIPLLADILKD 250 (312)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHhccchHHHHHHHHHh
Confidence 3455444433222111 1277777766653
No 214
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=84.81 E-value=1.3e+02 Score=38.61 Aligned_cols=197 Identities=17% Similarity=0.159 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch-hHHHHHHHhh
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVILTALLP 86 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~-~~~il~~ll~ 86 (1827)
-|=.++-||..+++.+|.+.. ....-|.|+..+.+. ..--|.-|.-++.+.+......-... .+.+.+.|..
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~------~~~~~~~L~~~L~S~-sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSL------QEIFQPLLLPYLNSP-SATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHhcccchH------HHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 467788899999999988652 112223455555543 55667888888888888876543221 2456666666
Q ss_pred hcCCCC-----------HHHHHHHHHHHHHHHHhhc--------------------hh---------HHHHHHHHHHHhc
Q psy14676 87 QLSSPR-----------QAVRKRTIVALSHLVMSCN--------------------LQ---------LYTKLIDFLLEGL 126 (1827)
Q Consensus 87 ~L~~~~-----------~~VRk~Ai~aL~~l~~~~~--------------------~~---------~~~~l~~~ll~~L 126 (1827)
.|.+++ ..+|..+-.-+..|...-- +. .....++.+...+
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhc
Confidence 676332 2566666666666655432 01 1122233334333
Q ss_pred cCCCC-------HHHHHHHH---------------HHHHHHHH------HhchhhHHhHHHHHHHHHhhcccCchHHHHH
Q psy14676 127 TTNKS-------TSTNRTYI---------------QCFAAICR------QAGHRFAEHIERVMPLILKYSREEDDELREF 178 (1827)
Q Consensus 127 ~~~~~-------~~~r~~ai---------------~~l~~la~------~~~~~~~p~l~~i~p~l~~~~~~~~delRe~ 178 (1827)
..... .+.|+.+. ...+.+|. ..|+++.|-+..+|..+. .+++.+++..
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK---~Een~~LQ~r 332 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIK---REENELLQQR 332 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhh---ccccHHHHHH
Confidence 22110 11122222 22222322 235666655554444333 3567889999
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCC
Q psy14676 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPN 214 (1827)
Q Consensus 179 al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn 214 (1827)
+..++..|+..|-..-..--++|+.-+..++..|+.
T Consensus 333 sA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~s 368 (441)
T PF12054_consen 333 SAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTS 368 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcc
Confidence 999999999987522222346788888888887754
No 215
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.67 E-value=1.9 Score=43.92 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch-hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVILTALLPQLSSPRQAVRKRTIVALSHLVM 108 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~-~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~ 108 (1827)
-+++-.|++.++...|+.+..-||.=||+++...+....-. .-..-..+++.|+++++.||+.|..|+..++.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34667777777444478888889999999999875421101 12356678889999999999999999988765
No 216
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=84.28 E-value=27 Score=40.71 Aligned_cols=155 Identities=13% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC------chHHHHHHHHHHHHHHH
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE------DDELREFCLQACEAFVQ 188 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~------~delRe~al~ale~~~~ 188 (1827)
++-+++.+++.|..+.+...|.++++++-. .+-+.+++|.+++++++. +-++--.-+...-+++.
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~ 265 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLK 265 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Confidence 344566666666555556677777766532 123566777766665431 11110000111111111
Q ss_pred hCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHH
Q psy14676 189 RCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCL 268 (1827)
Q Consensus 189 ~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L 268 (1827)
.----+.||+.+++|.++.++.-.. .+. +++|..-+-+|..||..+
T Consensus 266 N~~iFvdPY~hqlmPSilTcliakk-------------------lg~---------------~p~dhe~~alRd~AA~ll 311 (450)
T COG5095 266 NKYIFVDPYLHQLMPSILTCLIAKK-------------------LGN---------------VPDDHEHYALRDVAADLL 311 (450)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHH-------------------hcC---------------CCcchhHHHHHHHHHHHH
Confidence 1112467999999999887663210 000 011233467999999999
Q ss_pred HHHHHHcCCchhhhHHhhhHHHHhhcCC--CCHhHHHHHHHHHHHH
Q psy14676 269 EAIIATRRDLIGDMYRLVSPPLIARFKE--REENVKSDIFHAYMAL 312 (1827)
Q Consensus 269 ~~l~~~~~~~l~~~~~~v~p~L~~~l~e--~ee~VR~aa~~al~~l 312 (1827)
+-+.+..+.....+-+.+.-.+.+.|-+ +-+.-...++.+++.+
T Consensus 312 ~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l 357 (450)
T COG5095 312 KYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSIL 357 (450)
T ss_pred HHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhh
Confidence 9988876654333334444455555533 3334455555555444
No 217
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=84.07 E-value=45 Score=41.16 Aligned_cols=103 Identities=21% Similarity=0.319 Sum_probs=69.9
Q ss_pred HHHHhhccCCCCchhHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy14676 63 SDLLSRFGALLPSFHFVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQC 141 (1827)
Q Consensus 63 ~~l~~~~~~~l~~~~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~ 141 (1827)
+.++...++ .+....+++.+.+.+.. .+......++.|++.-...++.+.-..+++.+..++++.. ..+|+.++.+
T Consensus 8 ~~~L~~l~~--~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk-~~vR~~w~~~ 84 (339)
T PF12074_consen 8 ASMLSSLPS--SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKK-PPVRRAWLLC 84 (339)
T ss_pred HHHHHhCCC--cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 444444444 23556888889999874 6788999999999999888855555677888888886643 3499999999
Q ss_pred HHHHHHHhc-hhhHHhHHHHHHHHHhhc
Q psy14676 142 FAAICRQAG-HRFAEHIERVMPLILKYS 168 (1827)
Q Consensus 142 l~~la~~~~-~~~~p~l~~i~p~l~~~~ 168 (1827)
+|.+....+ ....++...++|.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 85 LGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred HHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 999987111 122333444555444443
No 218
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.66 E-value=75 Score=37.03 Aligned_cols=148 Identities=16% Similarity=0.191 Sum_probs=85.0
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHH
Q psy14676 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQS 200 (1827)
Q Consensus 121 ~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ 200 (1827)
.++-.+.+..++......++++..++.+-. ...+.++..+....+.+..+.+-.+..-+-.+...-+.-+ |++..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~ 78 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQP 78 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHH
Confidence 344445555667777788888888876552 2334444444444444555543333333323332222222 44433
Q ss_pred HHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchh
Q psy14676 201 ITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG 280 (1827)
Q Consensus 201 ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~ 280 (1827)
++......+... + -+++..|....+.+.++..++..+|+.
T Consensus 79 ~L~~~~~r~~~~-~-------------------------------------~~~~~~~~~~i~~a~s~~~ic~~~p~~-- 118 (234)
T PF12530_consen 79 LLLLLILRIPSS-F-------------------------------------SSKDEFWECLISIAASIRDICCSRPDH-- 118 (234)
T ss_pred HHHHHHhhcccc-c-------------------------------------CCCcchHHHHHHHHHHHHHHHHhChhh--
Confidence 332221111000 0 012346888888888999999998874
Q ss_pred hhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhh
Q psy14676 281 DMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 281 ~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~ 315 (1827)
-..+++.+..-+ ++..+.++.-++.++..+++.
T Consensus 119 --g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 119 --GVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred --HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 445555666666 788888999999999999854
No 219
>KOG2062|consensus
Probab=83.50 E-value=1.7e+02 Score=38.84 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFL 1225 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~L 1225 (1827)
|.|+-+|...+-+++---.-+|. ..-+.++|+.-+.- .|++.|++|+-+||-|.-.. ++.++..+++|
T Consensus 530 dkdpilR~~Gm~t~alAy~GTgn--nkair~lLh~aVsD-~nDDVrRaAVialGFVl~~d---------p~~~~s~V~lL 597 (929)
T KOG2062|consen 530 DKDPILRYGGMYTLALAYVGTGN--NKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRD---------PEQLPSTVSLL 597 (929)
T ss_pred CCchhhhhhhHHHHHHHHhccCc--hhhHHHhhcccccc-cchHHHHHHHHHheeeEecC---------hhhchHHHHHH
Confidence 67887777766665543222222 12344444443322 35667999999999776432 34455555666
Q ss_pred cch-hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhh
Q psy14676 1226 RKN-QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQ 1304 (1827)
Q Consensus 1226 rk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lge 1304 (1827)
.++ |..+|..++-||+-.+...|. ...+.-|-++.+|..--||+.++-.++-+.-.+....
T Consensus 598 ses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~----------- 659 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL----------- 659 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc-----------
Confidence 655 689999999999977665543 2344455678888888899999988876655432211
Q ss_pred cccccCCCchhhHHHHHHHhcCCCCHh--HHHHHHHH
Q psy14676 1305 IGRHTDLTSVADLKQVILNAFTPTSEE--VKSAASYT 1339 (1827)
Q Consensus 1305 iG~~~~~~~~~~l~~~~l~~~~~~s~e--Vr~aAa~a 1339 (1827)
+ +....+...+.+...+..++ +|.-|..|
T Consensus 660 ----~--pkv~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 660 ----C--PKVNGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred ----C--chHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 1 11245667777777777776 44444333
No 220
>KOG0803|consensus
Probab=83.32 E-value=32 Score=48.92 Aligned_cols=242 Identities=13% Similarity=0.090 Sum_probs=136.2
Q ss_pred HHHhhhhccccchhhHHHHHHhhhcccCC-C---CchHHHH----HHhccCChhhHHHHHHHHHHHHHhccccccccccc
Q psy14676 1004 QLFLHCECQEEGTRNVVAECLGKLTLIDP-S---NLLPRLQ----ESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEE 1075 (1827)
Q Consensus 1004 ~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~-~---~llP~L~----~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~ 1075 (1827)
.+++.+...++-++..|..+|+++....- + .++|... +...+.+..+|..+...+.-+.+..+..+.||
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~--- 121 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF--- 121 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH---
Confidence 33444445566667777788888765421 1 2455333 44477889999999999998889999999999
Q ss_pred hhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCC-CCCCCCcchhHHHHHHHHHHHHhhcCCC------
Q psy14676 1076 TSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLT-SPSSYDFAPFTSDIYQCTLVRLKAADID------ 1148 (1827)
Q Consensus 1076 ~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~-~~~~~~~~~~l~~l~~~ll~~L~~~D~d------ 1148 (1827)
+..++|...-+..|.++.|+..|...+..... +.. .+.-..+.+.+-.+...++-.....+-+
T Consensus 122 -------LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s 191 (1312)
T KOG0803|consen 122 -------LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA---EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLS 191 (1312)
T ss_pred -------HHhhhhhhhheecccchHHHHHHHHHHHhhcC---hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcc
Confidence 99999999999999999999988877665442 100 0000011111222222111111100000
Q ss_pred --------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhh
Q psy14676 1149 --------QEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPI 1220 (1827)
Q Consensus 1149 --------~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~ 1220 (1827)
+.|-..++-++..+....|+ +.-+...-.+++.+. . -..
T Consensus 192 ~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~-------------------~~el~~~~~~~kt~~------------s--~~~ 238 (1312)
T KOG0803|consen 192 SEELESKYQRVISSSLLLLLKLFKITGD-------------------EEELHSLSEKEKTFL------------S--SEK 238 (1312)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHhCc-------------------hHhhhhhhhhhhhhh------------h--HHH
Confidence 01111111111111111111 111110000111111 0 123
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCc
Q psy14676 1221 LGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNA 1292 (1827)
Q Consensus 1221 L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~ 1292 (1827)
+-.++.....++|.+.++.+..++++....+-+.-...+-+.+...+.+.| ++....|+.+.......|+.
T Consensus 239 fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~ 309 (1312)
T KOG0803|consen 239 FWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDE 309 (1312)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHH
Confidence 444555566789999999999999987665444334455555667777888 99999999888666666543
No 221
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=83.29 E-value=6.8 Score=42.74 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc
Q psy14676 92 RQAVRKRTIVALSHLVMSCNLQL-YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE 170 (1827)
Q Consensus 92 ~~~VRk~Ai~aL~~l~~~~~~~~-~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~ 170 (1827)
-..+||.|..|+..+...|.... +..+++.+..+|.. ..+++..+...+..++...|..+.++++.+++-+-..++.
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 35899999999999999887653 56778899999865 6889999999999999999999999999999988777641
Q ss_pred ------------CchHHHHHHHHHHHHHHHhCCC
Q psy14676 171 ------------EDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 171 ------------~~delRe~al~ale~~~~~~p~ 192 (1827)
...|....++.+...+-..+|.
T Consensus 118 k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 118 KLKENAVKQEIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp ---TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2345555777777777666654
No 222
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=82.62 E-value=1.4e+02 Score=37.39 Aligned_cols=213 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred chhHHHHHHHHHHHHHHHHhCCCCcChHh----HHHHHHHhhhhcCC-------CChhHHHHHHHHHHHHHHhCCCccch
Q psy14676 1227 KNQRALKLSTLLLLDTLLVNYPSAISTEM----LNKVTVELAPLVSE-------SDLHIAQLTLTLLTSIAKIQPNALVE 1295 (1827)
Q Consensus 1227 k~~r~lR~~al~aL~~L~~~~~~~l~~~~----~~~ll~~L~~ll~d-------~D~~l~~~al~~L~~l~~~~~~~~~~ 1295 (1827)
..+|.-|..++..|...++.+...-+... +..++..+.+=+.. .|..+...|+.+|+.+.-. |
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~----- 77 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-P----- 77 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-H-----
Confidence 34566677778887777776543322222 22333333332222 3677888889888877642 1
Q ss_pred hhHHhhhhhcccccCCCchhhHHHHHHHhcCCC--CHhHHHHHHHHHhh--hh----hhhhhhhHHHHHHhhhc---Cch
Q psy14676 1296 PAAASILPQIGRHTDLTSVADLKQVILNAFTPT--SEEVKSAASYTLGS--IA----VGNLQQYVPFVLKEIEN---QPK 1364 (1827)
Q Consensus 1296 ~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~--s~eVr~aAa~aLG~--i~----~~~l~~~LP~Il~~i~~---~~~ 1364 (1827)
++...++.....-++...+..+.++ +..+-..+..-|.. .+ ..+...-+-..+..+.+ +..
T Consensus 78 --------~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~s 149 (372)
T PF12231_consen 78 --------EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKS 149 (372)
T ss_pred --------HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchh
Confidence 2222221112123556666666543 33444444444432 11 11222223333333433 112
Q ss_pred hhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhc--cCCCc-chHHHHHhhhc
Q psy14676 1365 RQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL--IDPSN-LLPRLQESLKS 1441 (1827)
Q Consensus 1365 ~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~--~~p~~-~lP~L~~~l~~ 1441 (1827)
...--+.+++-++.+. +..+...+..=++.++..+-+....+|..| ..+|..+. +.|+. +...+.+.++.
T Consensus 150 i~~erL~i~~~ll~q~------p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a-~~l~~~~~~~l~~~~~~s~~~~~~~~~ 222 (372)
T PF12231_consen 150 IISERLNIYKRLLSQF------PQQMIKHADIWFPILFPDLLSSAKDIRTKA-ISLLLEAKKCLGPNKELSKSVLEDLQR 222 (372)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHhChhHHHHHHHHHHhcc
Confidence 2333456666666532 344444433223555555445566688874 44444443 23332 22333333332
Q ss_pred CCH--HHHHHHHHHHHHHhhh
Q psy14676 1442 NSA--LMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1442 ~~~--~~R~t~l~Alk~~~~~ 1460 (1827)
... ..-.-...-+++++.+
T Consensus 223 ~~~~~~~~~~~~~~L~~mi~~ 243 (372)
T PF12231_consen 223 SLENGKLIQLYCERLKEMIKS 243 (372)
T ss_pred ccccccHHHHHHHHHHHHHhC
Confidence 211 3334445556666655
No 223
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=82.23 E-value=80 Score=37.38 Aligned_cols=139 Identities=16% Similarity=0.096 Sum_probs=83.3
Q ss_pred HHHHHHHhhhhcCCc----hhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHH-HHHHHHHHHhhhcCCCCChhH
Q psy14676 1395 PAIWAQLFLHCECQE----EGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRT-TVLTAVKFTISDQMTSSDKDF 1469 (1827)
Q Consensus 1395 ~~i~~~L~~~~~~~~----e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~-t~l~Alk~~~~~~~~~~d~~l 1469 (1827)
-..+|.++.+++++. ...-..+|+.|+.++...+..=+-++...+.+..+..+. -+.++++++-..
T Consensus 110 la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~--------- 180 (262)
T PF14225_consen 110 LALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREA--------- 180 (262)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---------
Confidence 445677777776555 123345778999998654433333333333222221111 122222222210
Q ss_pred HHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhh--hHHHHHHHHHhhhccccc
Q psy14676 1470 RFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEF--QVETIVDALCSNMVSDKE 1547 (1827)
Q Consensus 1470 ~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~--~~~~~v~~l~~~l~~~~~ 1547 (1827)
+-|++...++..++.++..+.+.+|....+.|-.+.+.++-. ...+++.|+++-+.++..
T Consensus 181 ------------------f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 181 ------------------FFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW 242 (262)
T ss_pred ------------------hCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH
Confidence 112233467788899999999999999999999999887633 567789999988876433
Q ss_pred ccccCCccchhHHHHHHHhhhhcc
Q psy14676 1548 QLRDISSIGLKTVISVVYCLGDRN 1571 (1827)
Q Consensus 1548 ~~~~~~~~~vRr~Al~~l~s~a~~ 1571 (1827)
.-|+..|..+...
T Consensus 243 -----------~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 243 -----------MEALEVLDEIVTR 255 (262)
T ss_pred -----------HHHHHHHHHHHhh
Confidence 4566666665543
No 224
>KOG1949|consensus
Probab=81.77 E-value=16 Score=47.04 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHH----HHhhhcCCCCHHHHHHHHH----HHHHHHH
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILT----ALLPQLSSPRQAVRKRTIV----ALSHLVM 108 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~----~ll~~L~~~~~~VRk~Ai~----aL~~l~~ 108 (1827)
.-|.|..+++- .+..||..|...+-++..--+|.... ..+.+++ .+...|.|+-|.||..|+. +++.|.+
T Consensus 175 ~~p~l~R~L~a-~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 175 YKPILWRGLKA-RNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HhHHHHHhhcc-CchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 33445556653 47889999988887776666665522 1223333 3455578999999988865 5667778
Q ss_pred hhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHH
Q psy14676 109 SCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQ 181 (1827)
Q Consensus 109 ~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ 181 (1827)
.+++..+.+++..+...++.+...++|-..+.++..++..-. --+-+..++|.+-..+.|..+.+|-.+.+
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd 324 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVD 324 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHH
Confidence 899999999999999999887778999999999999875322 23456778887666677888888855444
No 225
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=80.94 E-value=12 Score=46.19 Aligned_cols=125 Identities=10% Similarity=0.180 Sum_probs=85.1
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCC-----C-CHHHHHHHHHHHHHHHHHhchh
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTN-----K-STSTNRTYIQCFAAICRQAGHR 152 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~-----~-~~~~r~~ai~~l~~la~~~~~~ 152 (1827)
.....+...+.+.+...|..|...|.. +..+.++++.++..+.+. . +...-...+.++.++...-.-.
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRT------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcc------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 344444445555677778776666543 555667777777776321 1 3455666677777777666678
Q ss_pred hHHhHHHHHHHHHhhcc----------cCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 153 FAEHIERVMPLILKYSR----------EEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~----------~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
+.||+..++|.++.++- +++-.+|++|...+..++++++..-....+.|+..+.+.+
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l 318 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKAL 318 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 89999999999998752 2345799999999999999987754444556666666655
No 226
>KOG1517|consensus
Probab=79.94 E-value=22 Score=48.06 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCC-CCchhHHHHHHH
Q psy14676 6 EQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGAL-LPSFHFVILTAL 84 (1827)
Q Consensus 6 ~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~-l~~~~~~il~~l 84 (1827)
.+-|.+++.-|..++.+.+..- ..-.-..++..-++.+.+++++=.|.=++-+||.+-++|... ..+....-.+.|
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ---~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL 647 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQ---KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKL 647 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhH---HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHH
Confidence 3679999999999999987632 222335566655566655446888999999999999998643 233344566778
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy14676 85 LPQLSSPRQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 85 l~~L~~~~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
...|.|+-+.||.+|+.||+.|....+
T Consensus 648 ~~~LsD~vpEVRaAAVFALgtfl~~~~ 674 (1387)
T KOG1517|consen 648 ILLLSDPVPEVRAAAVFALGTFLSNGS 674 (1387)
T ss_pred HHHhcCccHHHHHHHHHHHHHHhcccc
Confidence 888999999999999999999999753
No 227
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=79.92 E-value=2.8e+02 Score=39.63 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhh
Q psy14676 585 ERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALT 619 (1827)
Q Consensus 585 ~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~ 619 (1827)
..+++.+.+..+.|++.+||..|++.|..+-+...
T Consensus 541 ~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~~ 575 (1120)
T PF14228_consen 541 FWELLNLVLFKLGDESSEIRSKAMQLLRALEERFF 575 (1120)
T ss_pred HHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 44688888889999999999999999987765544
No 228
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=79.65 E-value=58 Score=39.81 Aligned_cols=161 Identities=14% Similarity=0.194 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHH----hcCCCHHHH-HHHHHHHHHHHhhccCCCCchhHHHH
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAI----EKQEDVSVQ-LEALDILSDLLSRFGALLPSFHFVIL 81 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l----~~~~~~~v~-~~al~iL~~l~~~~~~~l~~~~~~il 81 (1827)
.+|.|..--||.+-.-+.... -...++..++|.|++.+ .+. .|..| .++|.+++.++.+.++.+.+..+.++
T Consensus 39 ~lr~iKkeIL~Li~t~i~~~~--~~~~v~~~~i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~ 115 (319)
T PF08767_consen 39 LLRTIKKEILKLIETFISKAE--DPEEVANNFIPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQIL 115 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S---HHHHHHHTHHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 355565555555544443322 22347888888888755 211 23332 57899999999999998888877777
Q ss_pred HHHhhh----cCC---CCHHHHHHHHHHHHHHHHhhc-------hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy14676 82 TALLPQ----LSS---PRQAVRKRTIVALSHLVMSCN-------LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 82 ~~ll~~----L~~---~~~~VRk~Ai~aL~~l~~~~~-------~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~ 147 (1827)
+.++.. +.. .-|..|..=..-|..+...|. ++.+..+++.++.+++. ...++...+++++..+..
T Consensus 116 ~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh-~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 116 EAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKH-TNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH
Confidence 777655 442 358999988888888888764 44566677777777654 568889999999998887
Q ss_pred Hhch--------hhHHhHHHHHHHHHhhcccC
Q psy14676 148 QAGH--------RFAEHIERVMPLILKYSREE 171 (1827)
Q Consensus 148 ~~~~--------~~~p~l~~i~p~l~~~~~~~ 171 (1827)
.... .+..|+-.++.-++..+.|.
T Consensus 195 ~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 5543 34456666666666666543
No 229
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=79.28 E-value=9 Score=40.67 Aligned_cols=112 Identities=12% Similarity=0.221 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch----------------hhHHhH
Q psy14676 94 AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH----------------RFAEHI 157 (1827)
Q Consensus 94 ~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~----------------~~~p~l 157 (1827)
.||.+.+.++..++..--+..++.+++.+++.+..+ +......+.++..+.+...+ .+..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~--~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS--PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 577888888888888765666777777777776542 45566666666666654432 234455
Q ss_pred HHHHHHHHhhcccCc----hHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHHHHHh
Q psy14676 158 ERVMPLILKYSREED----DELREFCLQACEAFVQRCPKE-ITPHIQSITELCLTYI 209 (1827)
Q Consensus 158 ~~i~p~l~~~~~~~~----delRe~al~ale~~~~~~p~e-~~p~l~~ii~~ll~~l 209 (1827)
+.++.++.++++... +++...++.++.+|+...|-+ +.. ..+++.+++++
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l 135 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLL 135 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHc
Confidence 666666666654322 788889999999998855432 222 23788888877
No 230
>KOG2122|consensus
Probab=79.07 E-value=2.2e+02 Score=40.72 Aligned_cols=75 Identities=17% Similarity=0.307 Sum_probs=53.7
Q ss_pred cccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhh
Q psy14676 562 RFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPIL 641 (1827)
Q Consensus 562 Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l 641 (1827)
|++++..|++.++..++....+....+|.+..+.=.| |++ + |=...++.|
T Consensus 528 ~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-----Qq~--------L-----------------wD~gAv~mL 577 (2195)
T KOG2122|consen 528 RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-----QQM--------L-----------------WDDGAVPML 577 (2195)
T ss_pred HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-----HHH--------H-----------------HhcccHHHH
Confidence 5678888888888888887778888888876655444 221 0 223457788
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhh
Q psy14676 642 GSFLRKNQRALKLSTLLLLDTLLVN 666 (1827)
Q Consensus 642 ~~~l~~~~~~lk~~~l~~l~~l~~~ 666 (1827)
-.++++-++.+-.++-.+|.+++.+
T Consensus 578 rnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 578 RNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 8888988888888877777777643
No 231
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=78.95 E-value=22 Score=47.33 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh-HhhHHh
Q psy14676 264 AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP-LCLLST 342 (1827)
Q Consensus 264 Aak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 342 (1827)
++..+..+....+.--.++++.+.+.+......+++.+|..++.+++.+++...... +.| ...+..
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~-------------~~~~~~~~~~ 442 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT-------------PSCPDFVLEE 442 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC-------------CCCChhhHHH
Confidence 555565555543211234555555555544444577899999999999997543211 111 112233
Q ss_pred hhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCC
Q psy14676 343 QVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGED 422 (1827)
Q Consensus 343 ~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~ 422 (1827)
.++.+...+.....+++...+..++..|+.+. ++..++.+...+..
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----------~~~~i~~l~~~l~~------------------------ 488 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAG----------HPSSIKVLEPYLEG------------------------ 488 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccC----------ChhHHHHHHHhcCC------------------------
Confidence 44444444444444455556666665555332 24455555555410
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcch--hhhhHHHHHHH
Q psy14676 423 EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER--EENVKSDIFHA 488 (1827)
Q Consensus 423 ~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~--~~~Vr~~a~~~ 488 (1827)
+....-.+|.+|+.++..++...+.... +.+++.+.+. .++||.+|+-.
T Consensus 489 ----------~~~~~~~iR~~Av~Alr~~a~~~p~~v~-------~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 489 ----------AEPLSTFIRLAAILALRNLAKRDPRKVQ-------EVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHhCchHHH-------HHHHHHHcCCCCChHHHHHHHHH
Confidence 0123456999999999988877664444 4455555444 57899999964
No 232
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=78.75 E-value=4.9 Score=40.22 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=55.6
Q ss_pred chhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHHHHHhcc
Q psy14676 150 GHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE-ITPHIQSITELCLTYITY 211 (1827)
Q Consensus 150 ~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e-~~p~l~~ii~~ll~~l~~ 211 (1827)
++.+.||++.++.++...+..-.+++|+-++..++-+++.||.+ +..+...+++-.+..+.-
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 35678999999999999999889999999999999999999999 788888899988888754
No 233
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.54 E-value=62 Score=40.82 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=40.4
Q ss_pred hhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc
Q psy14676 1315 ADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361 (1827)
Q Consensus 1315 ~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~ 1361 (1827)
-.++..+-+...+..-+|-.++.+++|-+|+|.+..-+..++.++.+
T Consensus 675 m~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaS 721 (881)
T COG5110 675 MNVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLAS 721 (881)
T ss_pred hHHHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHH
Confidence 36888888999999999999999999999999888888888876543
No 234
>KOG1837|consensus
Probab=78.15 E-value=3.5e+02 Score=39.19 Aligned_cols=230 Identities=10% Similarity=0.012 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcC-------CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHh
Q psy14676 833 NLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTT-------NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY 905 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~-------~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~ 905 (1827)
+-+.+.++...+...+++..|..++..+...-.. +..-..--......-++++....-+.||.+.++......
T Consensus 1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455777888888899999999999998886542 111122344555666788888889999999998887766
Q ss_pred hcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhh-HHHHHhhc-----CCChHhHhhhhhcccchhhH
Q psy14676 906 SREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADL-KQVILNAF-----TPTSEEVKSAASYTLGSIAE 979 (1827)
Q Consensus 906 l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L-~~~l~~~~-----~~~~e~~r~~~~~~lg~~~~ 979 (1827)
|..-+... ..++|. ++... ...+++ +.++..++ .+.++++.+
T Consensus 1445 L~k~n~s~------~~~~~~----------~~~~~-----~r~~~~~~~Lvl~cl~~~~~~Dt~~~f~t----------- 1492 (1621)
T KOG1837|consen 1445 LKKINASK------HRWFWL----------LPVNQ-----SRKPLLLGTLVLNCLKDLFLFDTIESFVT----------- 1492 (1621)
T ss_pred HHHhhhhh------hhhhhh----------hcccc-----cchhHHHHHHHHHHHHHHHhhhhhHHHHh-----------
Confidence 65422211 001110 00000 011111 11211111 111222111
Q ss_pred hhhhcccccchhhhhhhhHHHHHHHHHhhhhc-cccchhhHHHHHHhhhcccCCCCchHHHHHHh---ccCChhhHHHHH
Q psy14676 980 IISWQSTSTSGVAQLQQFVPAIWAQLFLHCEC-QEEGTRNVVAECLGKLTLIDPSNLLPRLQESL---KSNSALMRTTHQ 1055 (1827)
Q Consensus 980 ~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~-~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L---~s~~~~~R~~a~ 1055 (1827)
+.+. .-...|+..++.+.+. +. ..+.|-..++-|++..+...++.+-|.+.+.+ ++++...|..|+
T Consensus 1493 -----~~r~--~~~~~p~v~ql~n~~~---e~~~~~~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~~~~r~~ai 1562 (1621)
T KOG1837|consen 1493 -----KSRF--ELLSYPLVSQLVNVLL---EFYASDIVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSSSRKARYLAI 1562 (1621)
T ss_pred -----hhhh--hhhhhhhHHHHHHhhc---cchhhhHHHHHHHHHHHhhccCChhhhHHHHHHHHHHhccccHHHHHHHH
Confidence 0000 0112233333333111 11 11223345678888888887777778777877 445568899999
Q ss_pred HHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1056 SNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1056 ~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
..+..++..-++...++ +++++|.+-..+.|..-.|-..+-..+.++=.
T Consensus 1563 ~~~~~l~~~lge~~~~l----------L~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~ 1611 (1621)
T KOG1837|consen 1563 IQVKLLYTKLGENVIVL----------LPQSIPFLAELMEDEDDEVECLCQKLIRQLEE 1611 (1621)
T ss_pred HHHHHHHHHhcchhHHh----------hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999888877777 99999999999999988888766554444433
No 235
>KOG4524|consensus
Probab=77.10 E-value=3e+02 Score=37.84 Aligned_cols=97 Identities=22% Similarity=0.232 Sum_probs=75.1
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQ 1161 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~ 1161 (1827)
.+..++......+.++.-.+|-+||.++..-+..+.. -.+.+.|.+.+.++.++.++. +.|+-+-++|+.|+.+
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~----~~n~LlPlvhq~W~~vie~~~--~k~~L~v~~a~~~i~~ 873 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLAT----YHNLLLPLVHQTWPSVIECLL--CKDPLIVQRAFSCIEQ 873 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhc----cchhHhHHHHhhhhHHHHHHh--cCchHHHHHHHHHHHH
Confidence 3445555556777888889999999998877766642 234577999999999999998 6778899999999999
Q ss_pred HHHHhhhhhh-hhhhhhHHHHHHh
Q psy14676 1162 IICNLGDYLK-SELPVCLPILLDR 1184 (1827)
Q Consensus 1162 l~~~~g~~l~-~~l~~lL~~Ll~~ 1184 (1827)
+.+..|+.+. ..+...+|.+-..
T Consensus 874 m~~~sgDFv~sR~l~dvlP~l~~~ 897 (1014)
T KOG4524|consen 874 MGKYSGDFVASRFLEDVLPWLKHL 897 (1014)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999665 3566667766433
No 236
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=76.05 E-value=2.1e+02 Score=35.57 Aligned_cols=240 Identities=19% Similarity=0.248 Sum_probs=128.6
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHHhc------cCCC--C----HHHHHH---H
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLEGL------TTNK--S----TSTNRT---Y 138 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~~L------~~~~--~----~~~r~~---a 138 (1827)
+++.-+-+.+...++....+...++|.++.+|++-.+. .++..++..+ ..+. . ..+++. .
T Consensus 69 ~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~lpl~ 148 (373)
T PF14911_consen 69 DFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKSLPLF 148 (373)
T ss_pred HHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHHHHHH
Confidence 34444444455557788888889999999988754321 2333333332 1211 1 123443 3
Q ss_pred HHHHHHHHHHhchhhHHhHHHHHHHHHhhc-------------------ccCchHHHHHHHHHH-HHHHHhCCCccccch
Q psy14676 139 IQCFAAICRQAGHRFAEHIERVMPLILKYS-------------------REEDDELREFCLQAC-EAFVQRCPKEITPHI 198 (1827)
Q Consensus 139 i~~l~~la~~~~~~~~p~l~~i~p~l~~~~-------------------~~~~delRe~al~al-e~~~~~~p~e~~p~l 198 (1827)
++.++.+....+..+...+.+++.-.+..+ ...+.++|+.+++-+ +.|+..-+....|++
T Consensus 149 lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p~p~l 228 (373)
T PF14911_consen 149 LQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAPPPRL 228 (373)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcH
Confidence 444443333333333334433333222111 123667777777665 555555555667888
Q ss_pred HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCc
Q psy14676 199 QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL 278 (1827)
Q Consensus 199 ~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~ 278 (1827)
..++..+.+.++--.-+ +++ .
T Consensus 229 ~~vL~fl~~Ll~~~~~~--------------------------------~~~---------------------------~ 249 (373)
T PF14911_consen 229 ASVLAFLQQLLKRLQRQ--------------------------------NEN---------------------------Q 249 (373)
T ss_pred HHHHHHHHHHHHhcCcc--------------------------------cch---------------------------h
Confidence 88888887776431000 000 0
Q ss_pred hhhhHHhhhHHHHhhc--CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhc
Q psy14676 279 IGDMYRLVSPPLIARF--KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLR 356 (1827)
Q Consensus 279 l~~~~~~v~p~L~~~l--~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~ 356 (1827)
...+.+.++|.+.+.+ -+.++.+|.-+...+..+++.....+ +..+.+.+.+.+-+. .+
T Consensus 250 ~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~------------~~~~~~~l~s~lrsf----vq--- 310 (373)
T PF14911_consen 250 ILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGS------------SGEPREQLTSVLRSF----VQ--- 310 (373)
T ss_pred HHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccC------------cchHHHHHHHHHHHH----HH---
Confidence 0112334444444443 45688999999999999997654211 122333333333332 22
Q ss_pred cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhh
Q psy14676 357 EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDE 400 (1827)
Q Consensus 357 d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~ 400 (1827)
+--..--+-.|++++.++..-|. .+..++|.|.+.+.+.+
T Consensus 311 k~l~~~t~~~f~~l~~vA~l~p~----lV~~Lip~i~q~l~~~E 350 (373)
T PF14911_consen 311 KYLAHYTYQYFQFLEKVAELDPQ----LVISLIPTIRQSLKDSE 350 (373)
T ss_pred HHhhhhhHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHH
Confidence 11122345778888888877664 45678888888887654
No 237
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=75.87 E-value=2.4e+02 Score=36.18 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHH-HHHhccCCCCHHHHHHHHHHHHHHHHHhc
Q psy14676 93 QAVRKRTIVALSHLVMSCNLQLYTKLIDF-LLEGLTTNKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 93 ~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~-ll~~L~~~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
...|-.|..|||.++.++++..+..++.. ++..|.+ .....|-.+.-.+...|....
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S-~sa~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNS-PSATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhCc
Confidence 36788899999999999988888777775 6666654 334456666667777776654
No 238
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.82 E-value=2.7e+02 Score=36.64 Aligned_cols=101 Identities=9% Similarity=0.168 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchH
Q psy14676 833 NLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDE 912 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~ 912 (1827)
+...|--||.-+ .+++-+++.+..+.++..+..+|.|.+|..++-.+|.+.-++.. ...+...++...+.|++..
T Consensus 912 lq~aA~l~L~kl-MClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de~t~yLyrrL~De~~~ 986 (1128)
T COG5098 912 LQVAAYLSLYKL-MCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADEHTHYLYRRLGDEDAD 986 (1128)
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh----hhHHHHHHHHHHhcchhhH
Confidence 344555566544 56778889999999999888889999999999999998876554 6778888999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcccccccc
Q psy14676 913 LREFCLQACEAFVQRCPKEITPHIQS 938 (1827)
Q Consensus 913 vre~al~Ale~~v~~~~~~i~p~l~~ 938 (1827)
||-+|+-++.+++.--.-.+.-++|.
T Consensus 987 V~rtclmti~fLilagq~KVKGqlg~ 1012 (1128)
T COG5098 987 VRRTCLMTIHFLILAGQLKVKGQLGK 1012 (1128)
T ss_pred HHHHHHHHHHHHHHccceeeccchhh
Confidence 99999999998875433345555543
No 239
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=75.16 E-value=88 Score=38.46 Aligned_cols=158 Identities=12% Similarity=0.136 Sum_probs=88.5
Q ss_pred hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH
Q psy14676 285 LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ 364 (1827)
Q Consensus 285 ~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~ 364 (1827)
.+++.|+..+..=+.+.|.++...++.+++...... ...+..++..+.|.|+..++++... +++-.
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~------------~~p~v~yl~~~~peil~~L~~gy~~--~dial 141 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSR------------SPPTVDYLERHRPEILDILLRGYEN--PDIAL 141 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--------------HHHHHHHT--THHHHHHHHGGGS--TTTHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCC------------CCchHHHHHhCCHHHHHHHHHHhcC--ccccc
Confidence 567778888888899999999999999997532100 0024578888999999999998864 45555
Q ss_pred HHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHH
Q psy14676 365 DCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAA 444 (1827)
Q Consensus 365 a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a 444 (1827)
.|-.+++++... +.+...+ |.+..-|.. -+|. +..++-+-..|
T Consensus 142 ~~g~mlRec~k~---------e~l~~~i---L~~~~f~~f-----------------------f~~~--~~~~Fdiasda 184 (335)
T PF08569_consen 142 NCGDMLRECIKH---------ESLAKII---LYSECFWKF-----------------------FKYV--QLPNFDIASDA 184 (335)
T ss_dssp HHHHHHHHHTTS---------HHHHHHH---HTSGGGGGH-----------------------HHHT--TSSSHHHHHHH
T ss_pred hHHHHHHHHHhh---------HHHHHHH---hCcHHHHHH-----------------------HHHh--cCCccHhHHHH
Confidence 666666655532 1222111 110000000 0011 11345676777
Q ss_pred HHHHHHHHHHhhh----hhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 445 AKCLEAIIATRRD----LIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 445 ~~~l~~l~~~~~~----~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
...+..+...+.. +|..+++.....+-..+....+-.|.++++.+++++
T Consensus 185 f~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ell 237 (335)
T PF08569_consen 185 FSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELL 237 (335)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHH
Confidence 7788877776663 344444444444444455555555666666655555
No 240
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=74.12 E-value=4 Score=33.68 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHH
Q psy14676 266 KCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHA 308 (1827)
Q Consensus 266 k~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~a 308 (1827)
|||+.++..-|..+. .+.+...+.+++.|..+.||.+|+..
T Consensus 1 k~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 467777777665544 55788899999999999999999865
No 241
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.02 E-value=2.9e+02 Score=36.28 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=96.0
Q ss_pred hhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCC---CCchHHHHHHh-ccCChhhHHHHHHHHHHHHHhccccc
Q psy14676 994 LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP---SNLLPRLQESL-KSNSALMRTTHQSNQTFNVIIQRNDI 1069 (1827)
Q Consensus 994 l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~---~~llP~L~~~L-~s~~~~~R~~a~~~L~~l~~~~~~~l 1069 (1827)
+..+-|..-+....+-.-.++..+..|.-||.++.=+.- ..-+|.+...+ +++.|..|..++..++.+.-.....
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~- 968 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT- 968 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhh-
Confidence 344444443333333223445566667778877644322 34688888888 6899999999999999654443222
Q ss_pred cccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCH
Q psy14676 1070 HNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQ 1149 (1827)
Q Consensus 1070 ~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~ 1149 (1827)
.+.....+...+.|....|+..++-++.-++-+ +.-..+.++..+. ..| .|.|+
T Consensus 969 -------------~de~t~yLyrrL~De~~~V~rtclmti~fLila-------gq~KVKGqlg~ma----~~L--~deda 1022 (1128)
T COG5098 969 -------------ADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-------GQLKVKGQLGKMA----LLL--TDEDA 1022 (1128)
T ss_pred -------------hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-------cceeeccchhhhH----hhc--cCCcc
Confidence 556677788899999999999999998877743 1112334444332 123 38899
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14676 1150 EVKERAISCMGQIICN 1165 (1827)
Q Consensus 1150 eVre~Ai~alg~l~~~ 1165 (1827)
++.+-|-+-+.++++.
T Consensus 1023 ~Isdmar~fft~~a~K 1038 (1128)
T COG5098 1023 EISDMARHFFTQIAKK 1038 (1128)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 9999999888887764
No 242
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=72.96 E-value=16 Score=35.43 Aligned_cols=67 Identities=12% Similarity=0.285 Sum_probs=54.0
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHH
Q psy14676 118 LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACE 184 (1827)
Q Consensus 118 l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale 184 (1827)
++.++..-+....+.++|+..+.|+..+....++.++.-++.++..+-....++++++-..|++.++
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4444444445556788999999999999999999999889999999888888888888878877654
No 243
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.76 E-value=1.6e+02 Score=34.97 Aligned_cols=218 Identities=19% Similarity=0.157 Sum_probs=116.0
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhcc-cCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTL-IDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~-~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.++..+.-+++.+++...++....-. ...+.+-|.+.++++++. .-+.++.+|..+.....+.+-.-. +.-+.-
T Consensus 32 ~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~--~~rll~ 107 (262)
T PF14225_consen 32 NKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDS--QSRLLF 107 (262)
T ss_pred HHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCC--CccHHH
Confidence 333333344445555544444433322 223446666677776643 445666777766555444333221 112233
Q ss_pred hhhhhhHHHHHhhcCCch----hhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFY----KITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAIS 1157 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~----~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~ 1157 (1827)
.+-..+|.++..+.++.+ ....+....+.++++. .-.+-+..++.....+-- .+ .. .
T Consensus 108 ~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~----------~~~~~La~il~~ya~~~f-r~----~~----d 168 (262)
T PF14225_consen 108 LLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEA----------QGLPNLARILSSYAKGRF-RD----KD----D 168 (262)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHh----------CCCccHHHHHHHHHhcCC-CC----HH----H
Confidence 466788888888887761 2223333445555532 111345555543322211 11 11 1
Q ss_pred HHHHHHHHhhhhhh-hhhhhhHHHHHHhhhhhh-h-HHHHHHHHHHHhcCCCccccc-hhhhhhHhhhhhhhcchhHHHH
Q psy14676 1158 CMGQIICNLGDYLK-SELPVCLPILLDRLRNEI-T-RLTTVKALTKIAASPLRIDLR-PILTDGIPILGSFLRKNQRALK 1233 (1827)
Q Consensus 1158 alg~l~~~~g~~l~-~~l~~lL~~Ll~~L~~e~-t-R~~av~al~~ia~~~~~~dl~-p~~~~~l~~L~~~Lrk~~r~lR 1233 (1827)
-+.+++..+.+.+- ++-..++-.+++.+.|.. | |..+.+.+..+... +|++ |+..+++..+.++++.+.+
T Consensus 169 fl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~---~d~~~~~~~dlispllrlL~t~~~--- 242 (262)
T PF14225_consen 169 FLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPH---VDMRSPHGADLISPLLRLLQTDLW--- 242 (262)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcc---ccCCCCcchHHHHHHHHHhCCccH---
Confidence 22333333333332 344567777888887764 3 88888888888764 2333 5667788888888876654
Q ss_pred HHHHHHHHHHHHhCCC
Q psy14676 1234 LSTLLLLDTLLVNYPS 1249 (1827)
Q Consensus 1234 ~~al~aL~~L~~~~~~ 1249 (1827)
..|++.|+..+...++
T Consensus 243 ~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 243 MEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHHHHhhccc
Confidence 4677777777665554
No 244
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=72.64 E-value=47 Score=45.96 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA 149 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~ 149 (1827)
..-+++-|+..|.++ +...|+.+-+.++.+|...
T Consensus 587 ~~vlveiLLslls~~-s~llR~~~~~vf~~~~~~~ 620 (784)
T PF04931_consen 587 SEVLVEILLSLLSQP-SALLRKVSEQVFEAFCPHL 620 (784)
T ss_pred HHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHhhc
Confidence 445666777766653 4567777777777777543
No 245
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=72.42 E-value=2.5e+02 Score=37.34 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCC-------
Q psy14676 58 ALDILSDLLSRFGALLPSFHFVILTALLPQLS-SPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTN------- 129 (1827)
Q Consensus 58 al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~-~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~------- 129 (1827)
.+..+-.-+....+.+...+..++.+++..-= ..++.+++.-+.=++.++... ..++...+..+++.+...
T Consensus 52 ~l~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~-~~yl~~vl~~LV~~f~p~~~~~~~~ 130 (563)
T PF05327_consen 52 QLIRWLKALSSCVSLLDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ-PKYLSPVLSMLVKNFIPPPSSIAEW 130 (563)
T ss_dssp HHHHHHHHHHHGGGGG-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHGGGS-HHHHHH-
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhccCCCcccccc
Confidence 34444444455566666668888888887732 446677777777777777765 557778888888877421
Q ss_pred ------CCHHHHHHHHHHHHHHHHHhchh
Q psy14676 130 ------KSTSTNRTYIQCFAAICRQAGHR 152 (1827)
Q Consensus 130 ------~~~~~r~~ai~~l~~la~~~~~~ 152 (1827)
....+...+-.+|..|.+..|..
T Consensus 131 ~~~~~~~~~~~~~~vH~~L~~Il~lvP~s 159 (563)
T PF05327_consen 131 PGCPPEKRREIYERVHDALQKILRLVPTS 159 (563)
T ss_dssp --------------HHHHHHHHHHH-GGG
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHcCCC
Confidence 11223345778888888877754
No 246
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=72.33 E-value=89 Score=39.05 Aligned_cols=237 Identities=19% Similarity=0.266 Sum_probs=131.8
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHH-Hhh-cC-C
Q psy14676 1431 LLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLL-RLL-ED-K 1507 (1827)
Q Consensus 1431 ~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll-~~l-~D-~ 1507 (1827)
+.+.++.++-+++..+|+++...+||++.+.. .++ ..++ -. ++.|+ ..+ .| +
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-----~l~--------~~~~-l~-----------id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE-----SLQ--------ILLK-LH-----------IDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-----HHH--------HHHH-cC-----------CchhhHhhhcccCC
Confidence 44556655556669999999999999997641 111 0010 11 12222 233 22 3
Q ss_pred chHHHHHHHHHhhhhhhhhh--hhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhh
Q psy14676 1508 NGEVQNLAVKCLGPLVNKVK--EFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTH 1585 (1827)
Q Consensus 1508 ~~~Vr~~a~~~Lg~L~~~l~--~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~ 1585 (1827)
...=|..|.|-.-++...-. .+-...++..++....+.+| ..|++++.+++-.+-.+|+++. ..
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D--------~lr~~cletL~El~l~~P~lv~------~~ 146 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDD--------RLRRICLETLCELALLNPELVA------EC 146 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCch--------HHHHHHHHHHHHHHhhCHHHHH------Hc
Confidence 34568888888888876522 22345666666666555444 8999999999999999999871 11
Q ss_pred hhcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhcc------CChHHHHHH
Q psy14676 1586 TLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDR------VDMFEFLNH 1659 (1827)
Q Consensus 1586 ~~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~------~~~~~~~~~ 1659 (1827)
.-+.. |++.+--|||+ +-.+...++..+||+--.| .|+..++..
T Consensus 147 gG~~~----------------------L~~~l~d~~~~--------~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~ap 196 (371)
T PF14664_consen 147 GGIRV----------------------LLRALIDGSFS--------ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAP 196 (371)
T ss_pred CCHHH----------------------HHHHHHhccHh--------HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHh
Confidence 11111 12222114443 4456666777777764332 554444444
Q ss_pred HHhh----ccchhhH-HHH-HHHHHHHHHhhChHHH------HHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHH
Q psy14676 1660 LESG----LRDHYDI-KML-TYLMLARLAQMTPAAL------LQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSA 1727 (1827)
Q Consensus 1660 ~~~g----l~d~~di-k~l-~~~~l~~l~~~~p~~~------~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~ 1727 (1827)
+.+- .+++.++ |+. |...+..+-+--|+-+ .+-|.+++..|+. .. .+..+..
T Consensus 197 ftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~------p~----------~~ir~~I 260 (371)
T PF14664_consen 197 FTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL------PN----------PEIRKAI 260 (371)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC------CC----------HHHHHHH
Confidence 3332 3333334 332 4455555544444433 1345555555433 11 2566667
Q ss_pred HHHHHHHhcccCCCCChhHHHHHHH
Q psy14676 1728 MRAVAALLTIQDADKNPALNDFVAT 1752 (1827)
Q Consensus 1728 ~r~~~~l~~~~~~~~~~~~~~~~~~ 1752 (1827)
+=...-+.+|+...-...|..--..
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~ 285 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRL 285 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccc
Confidence 7777777777776655555554443
No 247
>KOG1851|consensus
Probab=72.17 E-value=49 Score=46.99 Aligned_cols=149 Identities=17% Similarity=0.091 Sum_probs=99.4
Q ss_pred HHHHHHhhhcccC-CCCchHHHHHHhc-----cCChhhHHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHH
Q psy14676 1019 VVAECLGKLTLID-PSNLLPRLQESLK-----SNSALMRTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVI 1091 (1827)
Q Consensus 1019 ~a~e~Lg~L~~~~-~~~llP~L~~~L~-----s~~~~~R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~ 1091 (1827)
.+..|.+.+.... ...+.|.+.+.++ +.+|..|.+++.++. .++.+.-...+++ .+.+-..+.
T Consensus 1506 ~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~----------r~dI~~l~~ 1575 (1710)
T KOG1851|consen 1506 SALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELR----------RDDIRKLLE 1575 (1710)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchh----------HHHHHHHHH
Confidence 4455555554443 3557777777764 567899999999999 5555554445555 778888889
Q ss_pred HhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Q psy14676 1092 ASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLK 1171 (1827)
Q Consensus 1092 ~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~ 1171 (1827)
..+.|..-.||.+|..++..|++.= ...+ ..+.-........+...+....-.|..++|.++-.+++.+.
T Consensus 1576 s~l~D~~i~vre~Aa~~Lsgl~~~s-------~~~~---~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP 1645 (1710)
T KOG1851|consen 1576 SLLNDDQIEVREEAAKCLSGLLQGS-------KFQF---VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVP 1645 (1710)
T ss_pred HHHcchHHHHHHHHHHHHHHHHhcc-------cccc---chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccch
Confidence 9999998889999999998888631 1111 12222223333333455667778899999999998888776
Q ss_pred hhhhhhHHHHHHhhhh
Q psy14676 1172 SELPVCLPILLDRLRN 1187 (1827)
Q Consensus 1172 ~~l~~lL~~Ll~~L~~ 1187 (1827)
..++..+..+..-.++
T Consensus 1646 ~wip~~L~~Ls~fa~e 1661 (1710)
T KOG1851|consen 1646 LWIPKPLMNLSSFARE 1661 (1710)
T ss_pred hhhHHHHHHHHhhcCC
Confidence 6666666555444443
No 248
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=71.87 E-value=2.5e+02 Score=35.10 Aligned_cols=219 Identities=16% Similarity=0.230 Sum_probs=123.3
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHhhhhhh--hhhh----hHH-HHHHhhhcCch---hhHHHHHHHHHHHhhccccccc
Q psy14676 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVG--NLQQ----YVP-FVLKEIENQPK---RQYLLLHSLKEIISWQSTSTSG 1386 (1827)
Q Consensus 1317 l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~--~l~~----~LP-~Il~~i~~~~~---~q~~~l~aL~Eii~~~~~s~~g 1386 (1827)
+.+.+...+-+++.+||.++...+--...+ .+.. -++ +|...+..+.+ .+.-++.-++.++.... |
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~----~ 101 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK----G 101 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC----C
Confidence 444444456666699999887665432111 1111 111 22233332222 22234444555554210 2
Q ss_pred hhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-----cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhc
Q psy14676 1387 VAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-----NLLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461 (1827)
Q Consensus 1387 ~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-----~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~ 1461 (1827)
... +-..+...+++..++.++..|+++-|+|..|+..+|+ .=+..|.+.+.++.+..-.+++.++-+++...
T Consensus 102 ~~~---~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 102 PKE---IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred ccc---CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence 222 3345667777777788888999999999999999996 33466666666666667777888888888542
Q ss_pred CCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh----hcCCc-hHHHHHHHHHhhhhhhhhh---------
Q psy14676 1462 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL----LEDKN-GEVQNLAVKCLGPLVNKVK--------- 1527 (1827)
Q Consensus 1462 ~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~----l~D~~-~~Vr~~a~~~Lg~L~~~l~--------- 1527 (1827)
.. | +|+..+. -.+.++..|... .++.. .+.-.++.+++..+.+.-+
T Consensus 179 ~t------R--------~yl~~~~------dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 179 RT------R--------KYLRPGF------DLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ch------h--------hhhcCCc------cHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 11 1 1111100 112333444333 22222 1455667777777776543
Q ss_pred hhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCC
Q psy14676 1528 EFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSS 1574 (1827)
Q Consensus 1528 ~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~ 1574 (1827)
...++.+|+.+. .|+.++|...+..|..+-+-+|-
T Consensus 239 ~~~lksLv~~L~------------~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 239 FRGLKSLVDSLR------------LPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred chHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHCCCCC
Confidence 134555555543 25568999999999999886643
No 249
>KOG1566|consensus
Probab=71.66 E-value=1.5e+02 Score=35.59 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=51.3
Q ss_pred hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH
Q psy14676 285 LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ 364 (1827)
Q Consensus 285 ~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~ 364 (1827)
.+++.|+..+..-+++-|.++.+.+..++++-.... ..+..++..+ |.++..+++.-.+ .+++-.
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr-------------~~tv~Yl~t~-~e~~~~lv~~~~~-~~~iaL 143 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTR-------------SPTVEYLETN-PEILDNLVKGYEN-TPEIAL 143 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCc-------------chHHHHHHhC-HHHHHHHHhhhcc-chHHHH
Confidence 567788899999999999999999999997643111 1133455544 5667777776333 466666
Q ss_pred HHHHHHHHHHH
Q psy14676 365 DCLALLRELVQ 375 (1827)
Q Consensus 365 a~~~ll~~L~~ 375 (1827)
+|-.++.++..
T Consensus 144 ~cg~mlrEcir 154 (342)
T KOG1566|consen 144 TCGNMLRECIR 154 (342)
T ss_pred HHHHHHHHHHh
Confidence 77766665554
No 250
>KOG2011|consensus
Probab=70.97 E-value=4.4e+02 Score=37.01 Aligned_cols=211 Identities=18% Similarity=0.206 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhhccC---CCCchhHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhchhHHH--HHHHHHHHhcc
Q psy14676 54 VQLEALDILSDLLSRFGA---LLPSFHFVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNLQLYT--KLIDFLLEGLT 127 (1827)
Q Consensus 54 v~~~al~iL~~l~~~~~~---~l~~~~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~~~~~--~l~~~ll~~L~ 127 (1827)
.|..-+..+..++..++. .+.++..+=+-..+..|++ +--.+|-.|..+.-.+...+-+..++ ......-.++.
T Consensus 171 fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQle 250 (1048)
T KOG2011|consen 171 FRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQLE 250 (1048)
T ss_pred HHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445555555666655543 2233322222223444554 34578888777766666655433221 11222223331
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhh-----cccCchHHHHHHHHHHHHHHHhCCCccccchHH
Q psy14676 128 --TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY-----SREEDDELREFCLQACEAFVQRCPKEITPHIQS 200 (1827)
Q Consensus 128 --~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~-----~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ 200 (1827)
.......|...=..+....+... ...-+..+|.-++.. ..|-++++|-.|++.++-|+...|.-|-.
T Consensus 251 aEr~k~r~~rarle~Ll~~r~etqe--~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~---- 324 (1048)
T KOG2011|consen 251 AERNKSRGNRARLESLLMLRKETQE--QQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS---- 324 (1048)
T ss_pred HHhcccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc----
Confidence 11111222222122222222221 122233344444433 24668999999999999999999885421
Q ss_pred HHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcC--Cc
Q psy14676 201 ITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DL 278 (1827)
Q Consensus 201 ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~--~~ 278 (1827)
...++|+ .|. +- |..-.||....++|..+..... +.
T Consensus 325 --dsYLKYi------------GWt--------Ls--------------------Dk~~~VRl~~lkaL~~L~e~~~~~~~ 362 (1048)
T KOG2011|consen 325 --DSYLKYI------------GWT--------LS--------------------DKNGTVRLRCLKALIKLYEKDEDKDK 362 (1048)
T ss_pred --chHHHHh------------cce--------ee--------------------cCccHHHHHHHHHHHHHHhccccchH
Confidence 1223333 120 00 1122699999999999987732 23
Q ss_pred hhhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHH
Q psy14676 279 IGDMYRLVSPPLIARF-KEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 279 l~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~l 312 (1827)
+..|.+..-.-+++.. +|.+..||...+......
T Consensus 363 L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 363 LELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 3334444434444444 667778888877665444
No 251
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=70.24 E-value=15 Score=36.00 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=47.0
Q ss_pred cchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCC--CHhHHHHHHHHHHHHH
Q psy14676 255 DMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER--EENVKSDIFHAYMALL 313 (1827)
Q Consensus 255 D~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~--ee~VR~aa~~al~~ll 313 (1827)
|..|.+|.-||+.|..++..++.....+.+.+.-.+.+.|.++ ....+..|+.++.++-
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3479999999999999999888766666777888888888644 4556888888887774
No 252
>KOG3961|consensus
Probab=69.07 E-value=13 Score=41.36 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=65.0
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
++|.+.+.|...+...|--|-..+..+..+.++.+.|- |++|+.++..++...+-+|-..+|.++++++.
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpV----------LPqLI~plK~al~trd~ev~~~~Lkvlq~lv~ 184 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPV----------LPQLILPLKAALVTRDDEVICRTLKVLQQLVV 184 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccc----------cHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 45555556655555555556666666666666777766 99999999999999999999999999999986
Q ss_pred HhccCCCCCCCCcchhHHHHHHHH
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDIYQCT 1138 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l~~~l 1138 (1827)
... ..+..+.||..+|++.+
T Consensus 185 ~~~----~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 185 SVG----CVGAALVPFYRQLLPVL 204 (262)
T ss_pred hcc----ccchhhhhHHHHhhhhh
Confidence 532 12356677877777643
No 253
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=68.29 E-value=3.6e+02 Score=34.93 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCC
Q psy14676 343 QVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGED 422 (1827)
Q Consensus 343 ~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~ 422 (1827)
.++.++..+.....-. ...+.+|..+..|... ++-...+..+...|.+..
T Consensus 214 sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S------~~g~~~i~~L~~iL~~~~---------------------- 263 (464)
T PF11864_consen 214 SLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS------HLGHSAIRTLCDILRSPD---------------------- 263 (464)
T ss_pred HHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC------ccHHHHHHHHHHHHcccC----------------------
Confidence 4566666666654322 6777888888877742 233556677777772100
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHH--hhhhhHHHhhcchhhhhHHHHHHHHHHHH-hhcc
Q psy14676 423 EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYR--LVSPPLIARFKEREENVKSDIFHAYMALL-KGTR 497 (1827)
Q Consensus 423 ~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~--~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~-~~~g 497 (1827)
.. +..+.++-++|+.+++.+.-..| ....-.+. .++|.+...++-....|-.+.+..+..++ +.+|
T Consensus 264 -----~~----~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~ 334 (464)
T PF11864_consen 264 -----PQ----NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYG 334 (464)
T ss_pred -----cc----ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhh
Confidence 00 11246677899999999986664 22221122 47888888888778888888888888888 4444
No 254
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=67.55 E-value=76 Score=32.69 Aligned_cols=73 Identities=23% Similarity=0.270 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhc-CCCCHH-HHHHHHHHHHHHHHhh
Q psy14676 33 NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQL-SSPRQA-VRKRTIVALSHLVMSC 110 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L-~~~~~~-VRk~Ai~aL~~l~~~~ 110 (1827)
.+...++|.+..++.....++.|.+++-+++.++.... ..+++++.++..+ ++.... ..+.++.|+..++..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-----L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-----LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 35788999999999855688999999999999988753 2244555555543 222221 2688999999988665
No 255
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=67.01 E-value=3.3e+02 Score=34.09 Aligned_cols=275 Identities=14% Similarity=0.104 Sum_probs=149.5
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHh----c-----C-CCHHHHHHHHHHHHHHHhhc--c
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIE----K-----Q-EDVSVQLEALDILSDLLSRF--G 70 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~----~-----~-~~~~v~~~al~iL~~l~~~~--~ 70 (1827)
++.+.-.|++..-...+-+.-..+... ....=++.+++.++ . + .+.++-..|+..|+.++.+. .
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~----~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQ----ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 345566788877444444333222211 12333344444442 1 1 16678889999999998664 3
Q ss_pred CCCCchhH-HHHHHHhhhcCCCC--HHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHH---hccC-CCCHHHHHHHHHHH
Q psy14676 71 ALLPSFHF-VILTALLPQLSSPR--QAVRKRTIVALSHLVMSCNLQLYT-KLIDFLLE---GLTT-NKSTSTNRTYIQCF 142 (1827)
Q Consensus 71 ~~l~~~~~-~il~~ll~~L~~~~--~~VRk~Ai~aL~~l~~~~~~~~~~-~l~~~ll~---~L~~-~~~~~~r~~ai~~l 142 (1827)
..+..... -++...+..|.+++ -.+..+++.+|.. +.++...+. .....++. .+.+ =++..+....+.++
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 44544333 47788888887754 3666666666554 233332221 12233333 3333 23456778888999
Q ss_pred HHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccc--
Q psy14676 143 AAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDE-- 220 (1827)
Q Consensus 143 ~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~dd-- 220 (1827)
-.+....|..+..+...=+|.++..+-....++|..|...++.....++.+ ..+...+...++.- ..++ .+.+.
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~--~~~s~~~~~~~~~~-~~~~-~~~~~~~ 234 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN--KELSKSVLEDLQRS-LENG-KLIQLYC 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHhccc-cccc-cHHHHHH
Confidence 999999999999998888888887766677888988766555555444431 11111121111100 0000 00000
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCC---chhhhHHhhhHHHHhhcCCC
Q psy14676 221 EEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRD---LIGDMYRLVSPPLIARFKER 297 (1827)
Q Consensus 221 d~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~---~l~~~~~~v~p~L~~~l~e~ 297 (1827)
+.. ..|-.+ .+++. .+.+.-..++.-.+. .--++++..+......|+..
T Consensus 235 ~~L-------~~mi~~----------~~~~~-----------~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~ 286 (372)
T PF12231_consen 235 ERL-------KEMIKS----------KDEYK-----------LAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS 286 (372)
T ss_pred HHH-------HHHHhC----------cCCcc-----------hHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC
Confidence 000 000000 00000 122222222222221 12347778888888899999
Q ss_pred CHhHHHHHHHHHHHHHhh
Q psy14676 298 EENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 298 ee~VR~aa~~al~~ll~~ 315 (1827)
++.+|.+|+.||..++-.
T Consensus 287 d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 287 DPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999863
No 256
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=66.69 E-value=28 Score=35.60 Aligned_cols=104 Identities=17% Similarity=0.277 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK---EITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEG 232 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~---e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~ 232 (1827)
|+.+++..+.. .+++.+-.|.|+...+.++++-+. ++..|-..++..++.. +.+|
T Consensus 4 YlrDll~~L~~--~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L---~~~f----------------- 61 (114)
T PF10193_consen 4 YLRDLLEYLRS--DDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHL---QNKF----------------- 61 (114)
T ss_dssp -HHHHHHHHT--------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH------TT-----------------
T ss_pred hHHHHHHHHhc--CcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhc---cccC-----------------
Confidence 56666655543 122566678999999999998776 8888877777777642 1122
Q ss_pred CCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCH--hHHHHHHHHHH
Q psy14676 233 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREE--NVKSDIFHAYM 310 (1827)
Q Consensus 233 ~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee--~VR~aa~~al~ 310 (1827)
+.++=..||. +|+-+++.+.|. .+.|+|.+.|-+++- ..|..++.+++
T Consensus 62 ------------------~~~~Fe~~R~-----~alval~v~~P~-------~~~~~L~~~f~~~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 62 ------------------DIENFEELRQ-----NALVALVVAAPE-------KVAPYLTEEFFSGDYSLQQRMSILSALS 111 (114)
T ss_dssp --------------------TTTTHHHH-----HHHHHHHHHSGG-------GHHH-HHHHHTTS---THHHHHHHHHHH
T ss_pred ------------------CccCHHHHHH-----HHHHHHHHHhhH-------HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 0011123554 344455555564 567777777755555 45888887775
Q ss_pred H
Q psy14676 311 A 311 (1827)
Q Consensus 311 ~ 311 (1827)
.
T Consensus 112 ~ 112 (114)
T PF10193_consen 112 L 112 (114)
T ss_dssp H
T ss_pred H
Confidence 3
No 257
>KOG3961|consensus
Probab=66.30 E-value=20 Score=39.95 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=64.4
Q ss_pred hhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy14676 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIIC 1164 (1827)
Q Consensus 1085 ~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~ 1164 (1827)
.++|.+..++.+-.+.-+--|-.-+..+..+ +++...|.+.+++..+-..|. ..|.||...++.++.+++.
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~-------~g~kilpVLPqLI~plK~al~--trd~ev~~~~Lkvlq~lv~ 184 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLA-------GGEKILPVLPQLILPLKAALV--TRDDEVICRTLKVLQQLVV 184 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHh-------cccccccccHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHH
Confidence 4677777777665544443333334444432 346777899999998888887 6788999999999999887
Q ss_pred Hh---hhhhhhhhhhhHHHH
Q psy14676 1165 NL---GDYLKSELPVCLPIL 1181 (1827)
Q Consensus 1165 ~~---g~~l~~~l~~lL~~L 1181 (1827)
.. |..|.|++.++||.+
T Consensus 185 ~~~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 185 SVGCVGAALVPFYRQLLPVL 204 (262)
T ss_pred hccccchhhhhHHHHhhhhh
Confidence 65 578889999999987
No 258
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=66.25 E-value=9.3 Score=31.54 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=31.3
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy14676 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVAL 103 (1827)
Q Consensus 61 iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL 103 (1827)
+|+.+.+.-+..+. .+.++..+...|.|+++.||+.|+..+
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45666666655543 458899999999999999999998653
No 259
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=65.61 E-value=3.7e+02 Score=34.14 Aligned_cols=86 Identities=13% Similarity=0.217 Sum_probs=60.5
Q ss_pred hhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHH--HHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCC
Q psy14676 338 CLLSTQVPSLVKALQCQLREKSIRTRQDCLALLR--ELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDT 415 (1827)
Q Consensus 338 ~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~--~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~ 415 (1827)
..+....+.+.+.+.+++..++..|-+.|+.++. .+.. .+.++...++|.+...+.+.
T Consensus 289 ~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~----li~~~~~~i~p~i~~~L~~~---------------- 348 (409)
T PF01603_consen 289 EEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLS----LISQNSRVILPIIFPALYRN---------------- 348 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHH----HHHCTHHHHHHHHHHHHSST----------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHH----HHHhChHHHHHHHHHHHHHH----------------
Confidence 4567778888899999999999999998886653 2222 23577788888888887321
Q ss_pred cccCCCCCCCCCCCCCCCCcccH--HHHHHHHHHHHHHHHHhhhhhhh
Q psy14676 416 EEEDGEDEGEDDNEYSDDDDMSW--KVRRAAAKCLEAIIATRRDLIGD 461 (1827)
Q Consensus 416 e~ed~~~~~~~~~e~~d~~d~~w--~vr~~a~~~l~~l~~~~~~~f~~ 461 (1827)
...+| .||..|..++..+.+.-++.|..
T Consensus 349 ------------------~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 349 ------------------SKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp ------------------TSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred ------------------HHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 11345 58888888888777755555553
No 260
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=65.42 E-value=20 Score=35.11 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCC--HHHHHHHHHHHHHHHHh
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPR--QAVRKRTIVALSHLVMS 109 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~--~~VRk~Ai~aL~~l~~~ 109 (1827)
.++.+|+-|-.+|+.++.+|+.......+.+...+...|.|++ ...+.-|+.+|..+...
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998876677899999999998764 58899999999988553
No 261
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=65.38 E-value=26 Score=33.90 Aligned_cols=68 Identities=12% Similarity=0.283 Sum_probs=56.2
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHH
Q psy14676 855 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACE 922 (1827)
Q Consensus 855 ~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale 922 (1827)
.++......+.+.++..+|+.++.++..+....|+.+..-.+.++..+-.+..++++++-..|.+.++
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 33344444445567889999999999999999999999999999999999998888888888877664
No 262
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=64.88 E-value=3.4e+02 Score=33.44 Aligned_cols=108 Identities=11% Similarity=0.256 Sum_probs=77.4
Q ss_pred HHHHhccCCHhHHHHHHHHHHHHHHhCccc----ccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCC
Q psy14676 351 LQCQLREKSIRTRQDCLALLRELVQTLPGC----LAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGED 426 (1827)
Q Consensus 351 l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~----l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~ 426 (1827)
+.+....++-+|-..|+..+.++...-+.. +..+...+......++.
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~----------------------------- 219 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE----------------------------- 219 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-----------------------------
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc-----------------------------
Confidence 445566788899999999999988776543 35566667776666662
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHh--hhhhHHHhhcchhhhhHHHHHHHHHHHHhh
Q psy14676 427 DNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRL--VSPPLIARFKEREENVKSDIFHAYMALLKG 495 (1827)
Q Consensus 427 ~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~--l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~ 495 (1827)
..++-.|+.+++.|+.+..... .....|+.. -+..++..++|...+||.+||+.++=++..
T Consensus 220 --------s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 220 --------SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp ---------SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred --------CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 2367799999999999996555 444445443 467778899999999999999988777643
No 263
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=64.43 E-value=4.6e+02 Score=34.75 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=47.4
Q ss_pred hcHHHHHHHHHHHHhhhcC-------CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHH
Q psy14676 848 CNLQLYTKLIDFLLEGLTT-------NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQA 920 (1827)
Q Consensus 848 ~~~~~~~~l~~~l~~~l~~-------~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~A 920 (1827)
...+.+.++.+.++..+.+ |-.+-+|+.++.++..+-..-.... =|+++..+.|..+++|-.|-||
T Consensus 680 ~~S~sie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~kD~~~~-------~~y~iR~~~dki~~lR~l~yqa 752 (993)
T COG5234 680 EKSESIEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVKDSSGK-------KLYIIRQTFDKIDSLRGLAYQA 752 (993)
T ss_pred cccccHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhccccCC-------chhHHHHhhcccHHHHhhhhhh
Confidence 3445666666666665543 3345789988888877543322222 2356667778889999999999
Q ss_pred HHHHHhh
Q psy14676 921 CEAFVQR 927 (1827)
Q Consensus 921 le~~v~~ 927 (1827)
.|+....
T Consensus 753 ~eqI~v~ 759 (993)
T COG5234 753 LEQIRVH 759 (993)
T ss_pred hhheeee
Confidence 8885443
No 264
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=63.38 E-value=1.1e+02 Score=32.13 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHH
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLE 124 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~ 124 (1827)
+|+..-.+.++.+..- .......+.++...|+++++.|+.+|+..+..++..|+..+.. .++..++.
T Consensus 16 ~D~~~il~icd~I~~~--------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 16 PDWALNLELCDLINLK--------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred ccHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 4655555555544322 1123467888889999999999999999999999999885432 33445555
Q ss_pred hccC--CCCHHHHHHHHHHHHHHHHHhch
Q psy14676 125 GLTT--NKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 125 ~L~~--~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
.+.. ..+..+++.+++.+...+...+.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4443 35678999999999999987764
No 265
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=62.80 E-value=77 Score=35.89 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCH
Q psy14676 53 SVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKST 132 (1827)
Q Consensus 53 ~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~ 132 (1827)
..-.+++.+++.+.+.+|+.-.++...++..+-+.-.+++-..|+.+-.|+|..+..++++.+-..++--+.. .+...
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~--~~~~~ 92 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN--ADDSQ 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC--CCcCC
Confidence 4557899999999999998755555666666666656677899999999999999999998765544311111 11111
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhh---ccc---C--chHHHH---HHHHHHHHHHHhC--CCccccchH
Q psy14676 133 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY---SRE---E--DDELRE---FCLQACEAFVQRC--PKEITPHIQ 199 (1827)
Q Consensus 133 ~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~---~~~---~--~delRe---~al~ale~~~~~~--p~e~~p~l~ 199 (1827)
.-|.-.+-.+-.-. .+..+.-|.+.++|+.... ..+ . .-+.+. ...|-+.-+-..| |.++...++
T Consensus 93 ~~raWLLPlLr~~i--~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~ 170 (198)
T PF08161_consen 93 PGRAWLLPLLRDHI--RNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFP 170 (198)
T ss_pred cccchhHHHHHHhc--cCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHH
Confidence 12222222222211 2334444555566655433 221 1 222221 1223234444445 677766668
Q ss_pred HHHHHHHHHhccCC
Q psy14676 200 SITELCLTYITYDP 213 (1827)
Q Consensus 200 ~ii~~ll~~l~~dp 213 (1827)
.+-+.+-+.+...|
T Consensus 171 ~~a~~L~~~L~~~~ 184 (198)
T PF08161_consen 171 SFAKLLGNALYDQP 184 (198)
T ss_pred HHHHHHHHHHhcCc
Confidence 88888888775443
No 266
>KOG2081|consensus
Probab=62.79 E-value=4.5e+02 Score=34.09 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=103.8
Q ss_pred hhhhhhhhHHHHHHhhhhhh--------------hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcc--hhHHHH
Q psy14676 1170 LKSELPVCLPILLDRLRNEI--------------TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRK--NQRALK 1233 (1827)
Q Consensus 1170 l~~~l~~lL~~Ll~~L~~e~--------------tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk--~~r~lR 1233 (1827)
+.||+.+++..+..+++-+. .|+....++..++.--+. .+++..+...++. +.|..-
T Consensus 334 frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs-------~e~lk~~~~~l~e~~~~We~~ 406 (559)
T KOG2081|consen 334 FRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGS-------DECLKQMYIRLKENNASWEEV 406 (559)
T ss_pred hHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCc-------HHHHHHHHHHHccCCCchHHH
Confidence 45677777888877764221 288888877776642111 2233333333443 258888
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC--CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCC
Q psy14676 1234 LSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS--ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDL 1311 (1827)
Q Consensus 1234 ~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~--d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~ 1311 (1827)
.+++-.+..++++.+.. -+.++|++..++- +...+++..++..++.+.+...+ .+
T Consensus 407 EAaLF~l~~~~~~~~~~-----e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~------------------~p 463 (559)
T KOG2081|consen 407 EAALFILRAVAKNVSPE-----ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQ------------------HP 463 (559)
T ss_pred HHHHHHHHHHhccCCcc-----ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHh------------------Cc
Confidence 99999999999876532 1235555555553 34456888888888777663211 00
Q ss_pred CchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhh---hhhhhhhHHHHHHhhhc------CchhhHHHHHHHHHHHhhc
Q psy14676 1312 TSVADLKQVILNAFTPTSEEVKSAASYTLGSIA---VGNLQQYVPFVLKEIEN------QPKRQYLLLHSLKEIISWQ 1380 (1827)
Q Consensus 1312 ~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~---~~~l~~~LP~Il~~i~~------~~~~q~~~l~aL~Eii~~~ 1380 (1827)
.....+...+++.+.... .-.+|+.+.-+++ ......++|.++..+.. +...+. ++++++-+|.++
T Consensus 464 ~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~~~l 538 (559)
T KOG2081|consen 464 ELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAAC-LLQGISLIISNL 538 (559)
T ss_pred HHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcC
Confidence 122345556666665544 4555555555544 34556677777776543 223344 778888887644
No 267
>KOG1837|consensus
Probab=62.68 E-value=7.1e+02 Score=36.36 Aligned_cols=101 Identities=11% Similarity=0.110 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 260 VRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 260 VRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
|-...+.|++......++-+.|+..++ +....+...+.|..|+..+..+....++ .
T Consensus 1520 v~~~li~~i~~~~~a~~~d~~pl~~k~----l~~trss~~~~r~~ai~~~~~l~~~lge--------------------~ 1575 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDLKPLNQKI----LKKTRSSSRKARYLAIIQVKLLYTKLGE--------------------N 1575 (1621)
T ss_pred HHHHHHHHHHhhccCChhhhHHHHHHH----HHHhccccHHHHHHHHHHHHHHHHHhcc--------------------h
Confidence 334455555555544443233333332 2333455568899999998888865432 3
Q ss_pred HHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCc
Q psy14676 340 LSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPS 384 (1827)
Q Consensus 340 l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~ 384 (1827)
....+|+++|.+.+.+.|.+..|-..|..+..++-+++|..+..|
T Consensus 1576 ~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1576 VIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred hHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 467899999999999999999999999999999999998766543
No 268
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=62.56 E-value=45 Score=36.35 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC----chhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch
Q psy14676 37 RITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP----SFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL 112 (1827)
Q Consensus 37 ~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~----~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~ 112 (1827)
+|-|.|+..+..+ ++++..+.+|++++.+....+- +-+.++.+.++..- ..++ .+|+.-+..+.....+
T Consensus 3 eikplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~ 75 (174)
T PF04510_consen 3 EIKPLLISCLTMQ---ETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYG 75 (174)
T ss_pred chHHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhh
Confidence 4667888888643 4556778888888888765442 23556666655432 2222 6777777777733355
Q ss_pred hHHHHHHHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHh---chh-hHHhHHHHHHHHHhhcc----cCch-HHHHHH
Q psy14676 113 QLYTKLIDFLLEG----LTTNKSTSTNRTYIQCFAAICRQA---GHR-FAEHIERVMPLILKYSR----EEDD-ELREFC 179 (1827)
Q Consensus 113 ~~~~~l~~~ll~~----L~~~~~~~~r~~ai~~l~~la~~~---~~~-~~p~l~~i~p~l~~~~~----~~~d-elRe~a 179 (1827)
+.+.++++.++.. |..+.+.++..-.+...+.++-.. ... -..++.+|+|.+++.+. ...+ ++-..+
T Consensus 76 efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rg 155 (174)
T PF04510_consen 76 EFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRG 155 (174)
T ss_pred hHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5555555555544 444433344433333334433221 111 14567777777776654 3344 443355
Q ss_pred HHHHHHHHH
Q psy14676 180 LQACEAFVQ 188 (1827)
Q Consensus 180 l~ale~~~~ 188 (1827)
+.-+|.+++
T Consensus 156 l~~~e~~v~ 164 (174)
T PF04510_consen 156 LRDFESFVS 164 (174)
T ss_pred HHHHHHHHH
Confidence 666666655
No 269
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=61.74 E-value=87 Score=33.89 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHh
Q psy14676 94 AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT-------NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILK 166 (1827)
Q Consensus 94 ~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~-------~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~ 166 (1827)
.|-..++.|+..++.-+++..|.+++-.++..-.. .+...-+.+....+..+++....-|.||+.-+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999987522 23344556677888999999999999999988888776
Q ss_pred hcc
Q psy14676 167 YSR 169 (1827)
Q Consensus 167 ~~~ 169 (1827)
.++
T Consensus 116 ~L~ 118 (153)
T PF08146_consen 116 LLK 118 (153)
T ss_pred HHH
Confidence 664
No 270
>KOG0890|consensus
Probab=61.61 E-value=2.4e+02 Score=42.50 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=32.1
Q ss_pred chHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC
Q psy14676 1392 QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS 1429 (1827)
Q Consensus 1392 ~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~ 1429 (1827)
+-+.++.+.|++.|.......+..+|.|||.|..++|.
T Consensus 1080 ~~l~ql~~~Ll~gc~k~~~~~~~~~akcLg~lgaidp~ 1117 (2382)
T KOG0890|consen 1080 EDLSQLLTVLLDGCQKKTSQLEELCAKCLGELGAIDPS 1117 (2382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Confidence 45678888899988766666888999999999999997
No 271
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.49 E-value=29 Score=35.62 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchh--hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 118 LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR--FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 118 l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~--~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
++..|+..|.+..++.+..-+|.=||.+++..|.- +...+ ..-..+++.++.++++||..|+.|+..++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL-GAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH-SHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc-ChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45556666644445666777888888888887642 22222 244566777788999999999998877654
No 272
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=61.08 E-value=1.5e+02 Score=32.76 Aligned_cols=79 Identities=16% Similarity=0.094 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY 115 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~ 115 (1827)
+..+|+++.++.-. ++.-..++.. ++..+.+ +. ..+.++.|-+... ++.||+.|+.+|.. ++++.+
T Consensus 38 p~aL~~~l~sv~w~-~~~~v~e~~~----lL~~W~~-i~--~~~aLeLL~~~f~--d~~VR~yAV~~L~~----~sd~eL 103 (171)
T cd00872 38 PQALPKLLLSVKWN-KRDDVAQMYQ----LLKRWPK-LK--PEQALELLDCNFP--DEHVREFAVRCLEK----LSDDEL 103 (171)
T ss_pred cHHHHHHHhhCCCC-CHHHHHHHHH----HHHCCCC-CC--HHHHHHHCCCcCC--CHHHHHHHHHHHHh----CCHHHH
Confidence 56778888877533 3333333333 4455544 22 2344555544444 48999999998876 567778
Q ss_pred HHHHHHHHHhccC
Q psy14676 116 TKLIDFLLEGLTT 128 (1827)
Q Consensus 116 ~~l~~~ll~~L~~ 128 (1827)
..++.++++.|+-
T Consensus 104 ~~yL~QLVQaLKy 116 (171)
T cd00872 104 LQYLLQLVQVLKY 116 (171)
T ss_pred HHHHHHHHHHHHc
Confidence 8899999999964
No 273
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=61.01 E-value=2.2e+02 Score=34.59 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=107.2
Q ss_pred HHHHhccC-ChhhHHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHh
Q psy14676 1039 LQESLKSN-SALMRTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVI 1116 (1827)
Q Consensus 1039 L~~~L~s~-~~~~R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l 1116 (1827)
+.++|... ...++..|+.... .|..-+++.+... ++-..|.+...+.-..-.|+..-+..+....-
T Consensus 59 LaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~d----------l~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~l-- 126 (307)
T PF04118_consen 59 LAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQD----------LPIYSPGLFPLFSYASIQVKPQLLDIYEKYYL-- 126 (307)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhh----------cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc--
Confidence 33444333 2457777888888 4444445555554 66666666666655556777777777666553
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHH
Q psy14676 1117 RPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVK 1196 (1827)
Q Consensus 1117 ~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~ 1196 (1827)
|+ +..+.|.+..++-.++.++. |...|+.+.++..+..+-...|+. -++..++-.+ +++...|..|+.
T Consensus 127 -pL----~~~L~p~l~~li~slLpGLe--de~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~i---i~sp~~Rl~al~ 194 (307)
T PF04118_consen 127 -PL----GPALRPCLKGLILSLLPGLE--DEGSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCI---ITSPSRRLGALN 194 (307)
T ss_pred -Cc----cHHHHHHHHHHHHHhccccc--cCCchHHHHHHHHHHHHHHhcChh--HHHHHHHHHH---hcCcchhHHHHH
Confidence 22 23677888999999999998 778899999999999998887763 1233333333 245556888877
Q ss_pred HHHHHhcCCC-------ccc----cchhhhhhHhhhhhhhcchhHHHHHHHHHHH
Q psy14676 1197 ALTKIAASPL-------RID----LRPILTDGIPILGSFLRKNQRALKLSTLLLL 1240 (1827)
Q Consensus 1197 al~~ia~~~~-------~~d----l~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL 1240 (1827)
-+..--.... ..+ +.+--.-++..+...+.+.+--++...++-|
T Consensus 195 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlL 249 (307)
T PF04118_consen 195 YLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLL 249 (307)
T ss_pred HHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 6554332111 000 0011112455666667766655666555544
No 274
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=60.67 E-value=2.8e+02 Score=31.04 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhH-HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy14676 33 NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHF-VILTALLPQLSSPRQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~-~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
.+.++-++.+++..-+ ++..+|..|++++..++.. | . .|| ..++.++....||++.+|++|...+..+.+-.+
T Consensus 4 ~l~Qryl~~Il~~~~~-~~~~vr~~Al~~l~~il~q-G-L---vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 4 ALVQRYLKNILELCLS-SDDSVRLAALQVLELILRQ-G-L---VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhc-C-C---CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 4566666777775543 4789999999999998773 2 2 233 678888888899999999999999999988776
Q ss_pred hhHHHHHHH
Q psy14676 112 LQLYTKLID 120 (1827)
Q Consensus 112 ~~~~~~l~~ 120 (1827)
.-....+.+
T Consensus 78 s~v~~~~~~ 86 (187)
T PF12830_consen 78 SLVESRYSE 86 (187)
T ss_pred HHHHHHHHH
Confidence 544444443
No 275
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=60.49 E-value=12 Score=27.67 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q psy14676 1332 VKSAASYTLGSIAVGNLQQYVPFVLKEI 1359 (1827)
Q Consensus 1332 Vr~aAa~aLG~i~~~~l~~~LP~Il~~i 1359 (1827)
||.+|+.+||.+|. +..+|.+.+.+
T Consensus 1 VR~~Aa~aLg~igd---~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGD---PRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-S---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---HHHHHHHHHHh
Confidence 79999999999986 45566666554
No 276
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=60.24 E-value=14 Score=30.00 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=26.6
Q ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHhhhh
Q psy14676 1316 DLKQVILNAFTPTSEEVKSAASYTLGSIA 1344 (1827)
Q Consensus 1316 ~l~~~~l~~~~~~s~eVr~aAa~aLG~i~ 1344 (1827)
..+|.+++.+.+++++|+..|+.+|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999875
No 277
>KOG2153|consensus
Probab=59.83 E-value=2.4e+02 Score=36.86 Aligned_cols=124 Identities=14% Similarity=0.210 Sum_probs=58.6
Q ss_pred HHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHH--Hhhhccc----------cchhhHHHHHHHHHHH-hhc
Q psy14676 532 QCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSE--LQKDSIK----------LDDDSERKVVKMLLRL-LED 598 (1827)
Q Consensus 532 ~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~--~~~~~~~----------~d~~~~~~i~~~l~~~-l~D 598 (1827)
.+.+.+.+.+.+.-++-.|+....|..|.+|.-.+.+..+. ++....+ .-..+..++...+.+. +.+
T Consensus 216 ~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK~~~~~~ 295 (704)
T KOG2153|consen 216 FEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVKDLSLRT 295 (704)
T ss_pred HHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33334444445566666777788888888887666544333 1111111 1111222222222111 011
Q ss_pred ch-hhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Q psy14676 599 KN-GEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLV 665 (1827)
Q Consensus 599 ~~-~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~ 665 (1827)
+- ...-..|++|...|..+.+- + .+.+.++..+..++.++.+..+.+++..+..++.
T Consensus 296 ~~~v~l~~vav~c~~~Ll~a~pH-----F-----N~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~ 353 (704)
T KOG2153|consen 296 PQQVSLAQVAVQCACELLEAVPH-----F-----NLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFE 353 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh-----c-----cHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhc
Confidence 00 01122455666655543332 1 2445555566666666666666666666666644
No 278
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=59.14 E-value=27 Score=35.71 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=50.4
Q ss_pred HHHHHHHhccCCC-CHHHHHHHHHHHHHHHHHhch---hhHHhHHHHHHHHHhhcc----cCchHHHHHHHHHHHHHHHh
Q psy14676 118 LIDFLLEGLTTNK-STSTNRTYIQCFAAICRQAGH---RFAEHIERVMPLILKYSR----EEDDELREFCLQACEAFVQR 189 (1827)
Q Consensus 118 l~~~ll~~L~~~~-~~~~r~~ai~~l~~la~~~~~---~~~p~l~~i~p~l~~~~~----~~~delRe~al~ale~~~~~ 189 (1827)
++..++..|..++ +.+..+.++.....+.|.-+. .+..|..+++..++..-+ ++.++.| .+|+.+++-.
T Consensus 4 YlrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R---~~alval~v~ 80 (114)
T PF10193_consen 4 YLRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELR---QNALVALVVA 80 (114)
T ss_dssp -HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHH---HHHHHHHHHH
Confidence 5667777776433 677889999999999998877 888888888888876532 2456667 5556677888
Q ss_pred CCCccccch
Q psy14676 190 CPKEITPHI 198 (1827)
Q Consensus 190 ~p~e~~p~l 198 (1827)
+|..+.||+
T Consensus 81 ~P~~~~~~L 89 (114)
T PF10193_consen 81 APEKVAPYL 89 (114)
T ss_dssp SGGGHHH-H
T ss_pred hhHHHHHHH
Confidence 898877763
No 279
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=59.13 E-value=74 Score=34.46 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcC-------CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHh
Q psy14676 833 NLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTT-------NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY 905 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~-------~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~ 905 (1827)
+-..++.|.-.++..+++..|.++.-.+...... .+....+-+....+..+++.+..=|.||.+-++....+.
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556889999999999999999999999997543 234466788889999999999999999999999998887
Q ss_pred hcccc----------hHHHHHHHHHHHH
Q psy14676 906 SREED----------DELREFCLQACEA 923 (1827)
Q Consensus 906 l~d~~----------~~vre~al~Ale~ 923 (1827)
|...+ ..++...+++|..
T Consensus 117 L~~~~~~~~~~~~~~~~L~~~vL~~L~~ 144 (153)
T PF08146_consen 117 LKQFNSSKTESKSKSWELWRLVLSTLQK 144 (153)
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 76422 3556666666544
No 280
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=59.09 E-value=1.3e+02 Score=40.83 Aligned_cols=154 Identities=17% Similarity=0.181 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhc-CCCCHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy14676 40 GKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQL-SSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118 (1827)
Q Consensus 40 P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L-~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l 118 (1827)
..|+..+++. +..+.+++-..+-+.+.. .-.+-+++.|+... +..+ ..++..++..-.+ .-..+
T Consensus 7 ~~l~~~l~s~-~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~y~~~t~s-------~~~~~il~~~~~P-~~K~~ 71 (668)
T PF04388_consen 7 TELLSLLESN-DLSVLEEIKALLQELLNS------DREPWLVNGLVDYYLSTNS-------QRALEILVGVQEP-HDKHL 71 (668)
T ss_pred HHHHHHhcCC-chhhHHHHHHHHHHHhhc------cchHHHHHHHHHHHhhcCc-------HHHHHHHHhcCCc-cHHHH
Confidence 4455555543 555555555554444332 12234566666552 3222 2333333333323 11223
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH-HHHHHHHhhcccC-chHHHHHHHHHHHHHHHhCCCcccc
Q psy14676 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE-RVMPLILKYSREE-DDELREFCLQACEAFVQRCPKEITP 196 (1827)
Q Consensus 119 ~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~-~i~p~l~~~~~~~-~delRe~al~ale~~~~~~p~e~~p 196 (1827)
+..+=..+.+ +..|-.++..|+.+.+..|..+-.-.. .+++-+++++..| +.-+-..|+.++-.++-.+|..+.+
T Consensus 72 ~~~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 72 FDKLNDYFVK---PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHcC---chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 3333333333 357999999999999998876654443 6777888877654 4445567777788888888889999
Q ss_pred chHHHHHHHHHHhcc
Q psy14676 197 HIQSITELCLTYITY 211 (1827)
Q Consensus 197 ~l~~ii~~ll~~l~~ 211 (1827)
||+.++.+..+.+..
T Consensus 149 ~L~~Lf~If~Rl~~W 163 (668)
T PF04388_consen 149 HLPDLFNIFGRLLSW 163 (668)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998855
No 281
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=58.87 E-value=38 Score=35.05 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCC
Q psy14676 343 QVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGED 422 (1827)
Q Consensus 343 ~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~ 422 (1827)
....|+..|.+.|+++++.|+.-|+.++..++...++.+...+..=...|..+.+- . +.++.-.
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f----~-g~~Dp~~----------- 98 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANY----K-GPPDPLK----------- 98 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHc----C-CCCCccc-----------
Confidence 46788999999999999999999999999999999887765555555555554321 0 1010000
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q psy14676 423 EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 453 (1827)
Q Consensus 423 ~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~ 453 (1827)
- ++.+-.||.+|-+++..++.
T Consensus 99 --------G--d~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 99 --------G--DSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred --------C--cchhHHHHHHHHHHHHHHhc
Confidence 0 23455799999999887764
No 282
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=58.02 E-value=16 Score=29.63 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLV 107 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~ 107 (1827)
..++.|++.|.++++.||+.|+.||++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788889999999999999999999986
No 283
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=56.97 E-value=1.3e+02 Score=32.06 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHH
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLE 124 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~ 124 (1827)
+|+..-.+.+|.+..- + ..-.+.+.++..-|.+.++.|+.+|...|..++..|+..... .+++.|..
T Consensus 20 ~dw~~ileicD~In~~-----~---~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 20 PDLASILEICDMIRSK-----D---VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred cCHHHHHHHHHHHhCC-----C---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 4666555555555421 1 123467888888899999999999999999999999876432 34555555
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhch
Q psy14676 125 GLTTNKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 125 ~L~~~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
.+.....+.+++.++..+...+.....
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 444456678999999999999877654
No 284
>KOG2005|consensus
Probab=56.96 E-value=2.6e+02 Score=36.63 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=50.9
Q ss_pred cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCch
Q psy14676 1430 NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNG 1509 (1827)
Q Consensus 1430 ~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~ 1509 (1827)
-.+..+-.++.=.++..|.++--|+.-+... +|.+ .++.++-+..+|.|.
T Consensus 640 M~lR~f~h~l~yge~~iRravPLal~llsvS-----NPq~-------------------------~vlDtLsk~shd~D~ 689 (878)
T KOG2005|consen 640 MVLRHFGHLLHYGEPHIRRAVPLALGLLSVS-----NPQV-------------------------NVLDTLSKFSHDGDL 689 (878)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhccC-----CCcc-------------------------hHHHHHHHhccCcch
Confidence 3445555556666777777666666555432 2222 577888899999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q psy14676 1510 EVQNLAVKCLGPLVNKVKEFQVETIVDAL 1538 (1827)
Q Consensus 1510 ~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l 1538 (1827)
+|.-|++-++|-+..--+...+..++..+
T Consensus 690 eva~naIfamGLiGAGTnNARla~mLrql 718 (878)
T KOG2005|consen 690 EVAMNAIFAMGLIGAGTNNARLAQMLRQL 718 (878)
T ss_pred HHHHHHHHHhccccCCcchHHHHHHHHHH
Confidence 99999999999877544433343443333
No 285
>KOG2213|consensus
Probab=56.60 E-value=4.7e+02 Score=32.38 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q psy14676 64 DLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMS 109 (1827)
Q Consensus 64 ~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~ 109 (1827)
++..+|=..+.+....-.++-+....+.+..||..|+..|-.|+..
T Consensus 46 q~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 46 QFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 4444444444444456677777888899999999999999988876
No 286
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=56.34 E-value=1.3e+02 Score=40.79 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=76.0
Q ss_pred chhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc
Q psy14676 75 SFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY----TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 75 ~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~----~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
++...++..+-..+.. +.-|..|+.-|++|+..-+.-+. .+++..++..|..+.+..+-..++.+|..+.-..+
T Consensus 66 P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred ccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 3555777777777774 46889999999999987665432 36889999999888888889999999999999999
Q ss_pred hhhHHhHHHHHHHHHhhc
Q psy14676 151 HRFAEHIERVMPLILKYS 168 (1827)
Q Consensus 151 ~~~~p~l~~i~p~l~~~~ 168 (1827)
..+++|+++++.++...+
T Consensus 144 ~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 999999999999888765
No 287
>PF05536 Neurochondrin: Neurochondrin
Probab=56.11 E-value=6.1e+02 Score=33.54 Aligned_cols=186 Identities=17% Similarity=0.190 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhh--HHhHHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHhCCCccccchH-HHHHHHHH
Q psy14676 132 TSTNRTYIQCFAAICRQAGHRF--AEHIERVMPLILKYSREEDD-ELREFCLQACEAFVQRCPKEITPHIQ-SITELCLT 207 (1827)
Q Consensus 132 ~~~r~~ai~~l~~la~~~~~~~--~p~l~~i~p~l~~~~~~~~d-elRe~al~ale~~~~~~p~e~~p~l~-~ii~~ll~ 207 (1827)
...+..++..+.++++ ++.+ .|.+-.-+|.+++++...++ ++.+-|++.+-.++ ..|+.-..++. ..++.+.+
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHH
Confidence 5567888888999887 3333 35677789999999877766 88888999888887 44443222211 23333433
Q ss_pred HhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCC-c---hhhhH
Q psy14676 208 YITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRD-L---IGDMY 283 (1827)
Q Consensus 208 ~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~-~---l~~~~ 283 (1827)
.+...| .....|.+.+..+....+. . -...+
T Consensus 148 i~~~~~---------------------------------------------~~~E~Al~lL~~Lls~~~~~~~~~~~~~l 182 (543)
T PF05536_consen 148 IIPNQS---------------------------------------------FQMEIALNLLLNLLSRLGQKSWAEDSQLL 182 (543)
T ss_pred HHHhCc---------------------------------------------chHHHHHHHHHHHHHhcchhhhhhhHHHH
Confidence 332111 1122355566555554331 1 12245
Q ss_pred HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccC-CHhH
Q psy14676 284 RLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK-SIRT 362 (1827)
Q Consensus 284 ~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~-~~~v 362 (1827)
..+++.+-..|...+..-|.+.+.-++.++...... +.. . . .-....+.+.+.+...|..+ .+.-
T Consensus 183 ~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~---~~~---~-~-------~~~~W~~~l~~gl~~iL~sr~~~~~ 248 (543)
T PF05536_consen 183 HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPIL---PLE---S-P-------PSPKWLSDLRKGLRDILQSRLTPSQ 248 (543)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcc---ccc---c-C-------ChhhhHHHHHHHHHHHHhcCCCHHH
Confidence 567788888888888889999999999999654110 000 0 0 11234555666666666443 5667
Q ss_pred HHHHHHHHHHHHHhCcc
Q psy14676 363 RQDCLALLRELVQTLPG 379 (1827)
Q Consensus 363 R~a~~~ll~~L~~vl~~ 379 (1827)
|..++.+...|...+|.
T Consensus 249 R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 249 RDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHHHHHHHHHHHhCh
Confidence 88999999999888765
No 288
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=55.63 E-value=80 Score=33.30 Aligned_cols=130 Identities=20% Similarity=0.318 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhccC-CC---cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCC----CCChhHHHHHhhhhhhhhhh
Q psy14676 1412 TRNVVAECLGKLTLID-PS---NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMT----SSDKDFRFMATNDLMSELQK 1483 (1827)
Q Consensus 1412 vR~~aAecLGkL~~~~-p~---~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~----~~d~~l~~~a~~~l~~~l~~ 1483 (1827)
+|+-.|.++..++..+ |+ .+++.+.+.+++ ++.....++..++.+..+-.+ .....-+ +.+...+..
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~----~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERR----RELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHH----HHHHHHHHH
Confidence 7888899999999865 54 688889888877 577777788888777665432 1111111 111111111
Q ss_pred cccccChhHHHHHHHHHHHhhcCCc----hHHHHHHHHHhhhhhhhhhhhhHH--HHHHHHHhhhcccccccccCCccch
Q psy14676 1484 DSIKLDDDSERKVVKMLLRLLEDKN----GEVQNLAVKCLGPLVNKVKEFQVE--TIVDALCSNMVSDKEQLRDISSIGL 1557 (1827)
Q Consensus 1484 ~~~~~~~~~~~~l~~~ll~~l~D~~----~~Vr~~a~~~Lg~L~~~l~~~~~~--~~v~~l~~~l~~~~~~~~~~~~~~v 1557 (1827)
. ...++..+.+.++... ..+...+.+|++..++..+.+.+. .+++.++..+.++ +.
T Consensus 79 ~--------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~----------~~ 140 (148)
T PF08389_consen 79 N--------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP----------EL 140 (148)
T ss_dssp H--------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC----------CC
T ss_pred H--------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH----------HH
Confidence 1 2345566666554433 788999999999999988766443 4677777666333 55
Q ss_pred hHHHHHH
Q psy14676 1558 KTVISVV 1564 (1827)
Q Consensus 1558 Rr~Al~~ 1564 (1827)
|-.|...
T Consensus 141 ~~~A~~c 147 (148)
T PF08389_consen 141 REAAAEC 147 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 289
>KOG2122|consensus
Probab=54.37 E-value=9.3e+02 Score=35.11 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhh
Q psy14676 1494 RKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEF 1529 (1827)
Q Consensus 1494 ~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~ 1529 (1827)
+..+..+|+.|+-....|..|+..+|-.|.-+-..+
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D 564 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED 564 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH
Confidence 567789999999999999999999999988665544
No 290
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=53.92 E-value=2.3e+02 Score=34.38 Aligned_cols=151 Identities=10% Similarity=0.103 Sum_probs=104.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhccCC--CCchhHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy14676 43 STAIEKQEDVSVQLEALDILSDLLSRFGAL--LPSFHFVILTALLPQLSSP-RQAVRKRTIVALSHLVMSCNLQLYTKLI 119 (1827)
Q Consensus 43 l~~l~~~~~~~v~~~al~iL~~l~~~~~~~--l~~~~~~il~~ll~~L~~~-~~~VRk~Ai~aL~~l~~~~~~~~~~~l~ 119 (1827)
+...+...++.=-..+|.-|...+....+. ..++...+-..+.++|.-. -..|-.+|...-..+-+.++.+.+.+-+
T Consensus 16 L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl 95 (307)
T PF04118_consen 16 LKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDL 95 (307)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhc
Confidence 344443334544444444444444411111 1234446777888888643 3478889999999999999988776655
Q ss_pred HHHHHhcc---CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCc
Q psy14676 120 DFLLEGLT---TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 120 ~~ll~~L~---~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e 193 (1827)
.-...+|- ...+..+|-..+..+-...-..+..+.|.+..++..++-.+.++..|..+.++.-++.+...++.+
T Consensus 96 ~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 96 PIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 55555441 223456888888888888777788889999988888888888889999999999899988877664
No 291
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=53.55 E-value=1.1e+02 Score=32.21 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=56.0
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHhc
Q psy14676 78 FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLEGLTTNKS-TSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 78 ~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~~L~~~~~-~~~r~~ai~~l~~la~~~~ 150 (1827)
...+.++..-|.++++.|.-+|+..+..++..|+..+.. .+++.|...+..... +.+++.++..+...+....
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 467888888999999999999999999999999876432 345555554444333 3489999999999888764
No 292
>PF05536 Neurochondrin: Neurochondrin
Probab=52.96 E-value=6.8e+02 Score=33.13 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=52.0
Q ss_pred hhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14676 1083 YYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQI 1162 (1827)
Q Consensus 1083 l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l 1162 (1827)
+..+++.+-..+....-..+-+.+..++.+..... ........-..+...++..+..-+. +...++-|..|+...+.+
T Consensus 182 l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~-~~~~~~~~~~~W~~~l~~gl~~iL~-sr~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 182 LHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP-ILPLESPPSPKWLSDLRKGLRDILQ-SRLTPSQRDPALNLAASL 259 (543)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC-ccccccCChhhhHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 44555555544444334445556666666654331 0000111223577788887777675 466788899999999999
Q ss_pred HHHhhhh
Q psy14676 1163 ICNLGDY 1169 (1827)
Q Consensus 1163 ~~~~g~~ 1169 (1827)
+...|..
T Consensus 260 l~~~G~~ 266 (543)
T PF05536_consen 260 LDLLGPE 266 (543)
T ss_pred HHHhChH
Confidence 9998863
No 293
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=52.33 E-value=1.1e+02 Score=31.53 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=54.6
Q ss_pred hhhhhHhhhhhhhc-chhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhC
Q psy14676 1213 ILTDGIPILGSFLR-KNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1213 ~~~~~l~~L~~~Lr-k~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~ 1289 (1827)
++..++|.+...+. ....+.|.+++..+..|+.+.+ ++++.++.++..+..-....+. ...++.+|..+++.+
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 45667788888887 5567999999999999988644 6777777777766665555444 466788888888765
No 294
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=50.54 E-value=2.5e+02 Score=33.19 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHhhccC------C-CCc-hhHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhc---hh----HH
Q psy14676 52 VSVQLEALDILSDLLSRFGA------L-LPS-FHFVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCN---LQ----LY 115 (1827)
Q Consensus 52 ~~v~~~al~iL~~l~~~~~~------~-l~~-~~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~---~~----~~ 115 (1827)
++.-.++..+|+.+++.... . +.. ....+-..++..|.. .+..+=.++..++..++..+- +. +.
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 55567888889999976532 1 111 233566666666643 233444566677777777654 22 23
Q ss_pred HHHHHHHHHhccCC-CCH--HHHHHH--HHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCc--------hHHHHHHHHH
Q psy14676 116 TKLIDFLLEGLTTN-KST--STNRTY--IQCFAAICRQAGHRFAEHIERVMPLILKYSREED--------DELREFCLQA 182 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~-~~~--~~r~~a--i~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~--------delRe~al~a 182 (1827)
...++.++..+... ... .+||.+ -.++.++..+.+..-.+-+...|.-++++.+.+. |.-|-.|+..
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 44566677777554 222 456653 4566677777665434667778888887765421 3456677777
Q ss_pred HHHHHH--hCCCccccchHHHHHHHHHHhc
Q psy14676 183 CEAFVQ--RCPKEITPHIQSITELCLTYIT 210 (1827)
Q Consensus 183 le~~~~--~~p~e~~p~l~~ii~~ll~~l~ 210 (1827)
+-.+.+ .....+.||+...+.++++.+.
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 766666 3467788999999999888663
No 295
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=50.16 E-value=10 Score=46.68 Aligned_cols=9 Identities=22% Similarity=0.435 Sum_probs=5.9
Q ss_pred hhhHHHHHH
Q psy14676 257 SWKVRRAAA 265 (1827)
Q Consensus 257 sWkVRraAa 265 (1827)
-|..+...+
T Consensus 124 ~WtP~~~t~ 132 (458)
T PF10446_consen 124 FWTPGATTA 132 (458)
T ss_pred eeccccccc
Confidence 498876543
No 296
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=48.76 E-value=1.6e+02 Score=33.29 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=48.1
Q ss_pred HhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh
Q psy14676 1092 ASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGD 1168 (1827)
Q Consensus 1092 ~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~ 1168 (1827)
.+++=.+...-.+.+.+++.++..+++ ...|++.+++..+-+ +. ++.+.+.|+.+-.|+|..+...|.
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~-------~~~~~l~~~L~~l~~-lr-~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGE-------RSSPLLKPILKTLGD-LR-ESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhh-------hccHHHHHHHHHHHH-HH-cCCCcchHHHHHHHHHHHHHHCCH
Confidence 344334445556888899999988764 234677777765544 43 345578899999999999999986
No 297
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=48.26 E-value=53 Score=32.91 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=56.1
Q ss_pred hhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccc-ccCchhhHHHHHHHHhhhh
Q psy14676 338 CLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC-LAPSLPALIPDVTSVAEWD 399 (1827)
Q Consensus 338 ~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~-l~~~l~~Llp~i~~~L~~~ 399 (1827)
+.+++.++.++..+...|..=.+.||..++.+|..+.+..|+. ...+...+++....++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4678899999999999999999999999999999999999998 6788889999999998553
No 298
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=48.11 E-value=2e+02 Score=30.67 Aligned_cols=86 Identities=13% Similarity=0.269 Sum_probs=62.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH--HHHHHHHHhhcc-cCchHHHHHHHHHHHHHHHhCCCc
Q psy14676 117 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI--ERVMPLILKYSR-EEDDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 117 ~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l--~~i~p~l~~~~~-~~~delRe~al~ale~~~~~~p~e 193 (1827)
..+..+..+|.. .++.+...++..+.++...+|..|...+ .+++.-+.+.++ ..+.++|+.++..+..|...++.+
T Consensus 41 ~a~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 41 YAMRALKKRLLS-KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 345556666655 5678889999999999999998886654 245566666554 467899999999999999987654
Q ss_pred cccchHHHHHHH
Q psy14676 194 ITPHIQSITELC 205 (1827)
Q Consensus 194 ~~p~l~~ii~~l 205 (1827)
|.++.+....
T Consensus 120 --~~l~~i~~~y 129 (142)
T cd03569 120 --PQLKYVVDTY 129 (142)
T ss_pred --cccHHHHHHH
Confidence 5555444444
No 299
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=47.70 E-value=1.5e+02 Score=31.84 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHH
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLE 124 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~ 124 (1827)
+|+..-.+.+|.+.. . ...-...+.++..-|.+.++.|.-+|+..+..++..|+..... .+++.|..
T Consensus 16 ~dw~~il~icD~I~~-------~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k 87 (144)
T cd03568 16 ENWGLILDVCDKVKS-------D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK 87 (144)
T ss_pred cCHHHHHHHHHHHhc-------C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 366555555555542 1 1122467888888899999999999999999999999976432 34555555
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhc
Q psy14676 125 GLTTNKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 125 ~L~~~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
.+.......++..++..+...++..+
T Consensus 88 l~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 88 LINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 55444667899999888888887665
No 300
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=47.42 E-value=8.1e+02 Score=32.41 Aligned_cols=72 Identities=17% Similarity=0.238 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhc
Q psy14676 835 QLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSR 907 (1827)
Q Consensus 835 ~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~ 907 (1827)
..-+++|..++...+...|..+...+++.+-. ++.-...-+..+|-+++|....++..|.-.++=.+++.+.
T Consensus 246 ~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~-~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp 317 (559)
T PF14868_consen 246 QHVLVHLCTFIASLSPSAFPELERFLLENVLH-PHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLP 317 (559)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcC
Confidence 34577888888889999999999999998764 6677889999999999999998888877777778887775
No 301
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=47.28 E-value=3.6e+02 Score=28.62 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=56.0
Q ss_pred hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH-----HHHHHHHhccCCCCHH---HHHHHHHHHHHHHHH
Q psy14676 77 HFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK-----LIDFLLEGLTTNKSTS---TNRTYIQCFAAICRQ 148 (1827)
Q Consensus 77 ~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~-----l~~~ll~~L~~~~~~~---~r~~ai~~l~~la~~ 148 (1827)
....+.++-..|.++++.|+-.|+..+..++..|++.+... ++..+...+....... |++.++..+...+..
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 35788888899999999999999999999999998765433 4455554443333333 899999999988887
Q ss_pred h
Q psy14676 149 A 149 (1827)
Q Consensus 149 ~ 149 (1827)
.
T Consensus 120 f 120 (140)
T PF00790_consen 120 F 120 (140)
T ss_dssp T
T ss_pred H
Confidence 6
No 302
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=46.01 E-value=1.6e+02 Score=38.69 Aligned_cols=230 Identities=16% Similarity=0.221 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHh-----h--------hhhhhHHHH
Q psy14676 1128 APFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDR-----L--------RNEITRLTT 1194 (1827)
Q Consensus 1128 ~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~-----L--------~~e~tR~~a 1194 (1827)
..|++-+++.+.+.++ +.+..+|=.+.+.++.+.+.+|-.+...+-.++....+. + .||.+-..+
T Consensus 241 h~~l~~iV~f~~~s~S--s~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~ 318 (993)
T COG5234 241 HIYLEVIVDFLLSSVS--SIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGA 318 (993)
T ss_pred hHHHHHHHHHHHcCcc--cccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHH
Confidence 3567777777777766 677889999999999999998765443222233322222 2 234333333
Q ss_pred HHHHHHHhcCCCccccc-----hhhhhhHhhhhhh-hcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhh-hc
Q psy14676 1195 VKALTKIAASPLRIDLR-----PILTDGIPILGSF-LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAP-LV 1267 (1827)
Q Consensus 1195 v~al~~ia~~~~~~dl~-----p~~~~~l~~L~~~-Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~-ll 1267 (1827)
+--++ ++. .+..|+. |++...+.--.++ -+-....+|.++.--+=.+...++..+.+..-..++.-|.. .+
T Consensus 319 i~~~a-la~-~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~al 396 (993)
T COG5234 319 ILFFA-LAG-AGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTAL 396 (993)
T ss_pred HHHHH-Hhh-ccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhh
Confidence 33333 222 1223332 2222222110011 11112346666655555555555555555533344444444 78
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCccchhhHH------------hhhhhcccccCC-C-c--hhh-HHHHHHHhcCCCCH
Q psy14676 1268 SESDLHIAQLTLTLLTSIAKIQPNALVEPAAA------------SILPQIGRHTDL-T-S--VAD-LKQVILNAFTPTSE 1330 (1827)
Q Consensus 1268 ~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~------------~~lgeiG~~~~~-~-~--~~~-l~~~~l~~~~~~s~ 1330 (1827)
-|....+|..+.-+|-++.-.+.......... .--|.+.|.+.. . + -.+ +..++++-+..-+.
T Consensus 397 FDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslIN~~sv~r~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~ 476 (993)
T COG5234 397 FDPELNVRRAATAALFEVIGRHASIADGLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDV 476 (993)
T ss_pred cCchhhhhhHHHHHHHHHhccCCCcccchhhhhhccceecchhhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccch
Confidence 89999999998877777665422111111111 111333333311 1 1 112 33446667677788
Q ss_pred hHHHHHHHHHhhhhhh--hhhhhHHHHHHhhhc
Q psy14676 1331 EVKSAASYTLGSIAVG--NLQQYVPFVLKEIEN 1361 (1827)
Q Consensus 1331 eVr~aAa~aLG~i~~~--~l~~~LP~Il~~i~~ 1361 (1827)
++|...++.|-..-.+ .++.|+|.|+..+..
T Consensus 477 ~~k~~~~y~l~~liK~~~~~p~yl~~Il~k~~s 509 (993)
T COG5234 477 KVKQLSAYSLRQLIKYPKELPIYLPPILDKLSS 509 (993)
T ss_pred hhhhhccccHHHHhcCcccCchhhhHHhhhCch
Confidence 9999999999885332 455699999987644
No 303
>KOG1848|consensus
Probab=45.83 E-value=1.2e+03 Score=33.87 Aligned_cols=246 Identities=14% Similarity=0.097 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHHH---
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSP---RQAVRKRTIVALSHLVM--- 108 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~---~~~VRk~Ai~aL~~l~~--- 108 (1827)
-..++|.+.-........++|...++++-.+++..|..+...++.+.+.+-...... +..+-.-+..++.-++.
T Consensus 839 ~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfL 918 (1610)
T KOG1848|consen 839 LGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFL 918 (1610)
T ss_pred hHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcch
Confidence 345666554333334478899999999999999999887554665555444333322 34555556666655544
Q ss_pred -hhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-------hhhHHhH--------------------HHH
Q psy14676 109 -SCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-------HRFAEHI--------------------ERV 160 (1827)
Q Consensus 109 -~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-------~~~~p~l--------------------~~i 160 (1827)
.++.+-+..+++.++..-++..+..+--+++..+=.+..... +....|. --+
T Consensus 919 qSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~l 998 (1610)
T KOG1848|consen 919 QSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIML 998 (1610)
T ss_pred hcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHH
Confidence 334444555566655544333333333344444433333221 1111111 112
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcccc------chHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCC
Q psy14676 161 MPLILKYSREEDDELREFCLQACEAFVQRCPKEITP------HIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMD 234 (1827)
Q Consensus 161 ~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p------~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d 234 (1827)
+..+.+.+.++-.|||..|.|.|=..+..-+..+.+ +...|+|++- . .|.-+ -++|.+ +++
T Consensus 999 l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd-~---~~~q~---~~ewng-----kei- 1065 (1610)
T KOG1848|consen 999 LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD-S---QPIQN---VSEWNG-----KEI- 1065 (1610)
T ss_pred HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc-c---ccccc---hhhhcc-----hhH-
Confidence 333445567788999999988764444422222333 2233444332 1 12111 123310 000
Q ss_pred CcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCc---------hhhhHHhhhHHHHhhcCCCCHhHHHHH
Q psy14676 235 TEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL---------IGDMYRLVSPPLIARFKEREENVKSDI 305 (1827)
Q Consensus 235 ~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~---------l~~~~~~v~p~L~~~l~e~ee~VR~aa 305 (1827)
...|. ....-.|+.++.-+++. +...++.++.++.....+...++..++
T Consensus 1066 --------------------qkqwt--et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsa 1123 (1610)
T KOG1848|consen 1066 --------------------QKQWT--ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSA 1123 (1610)
T ss_pred --------------------hhhhh--hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHH
Confidence 00111 01233455555544432 334566677777766778889999999
Q ss_pred HHHHHHHHhh
Q psy14676 306 FHAYMALLKG 315 (1827)
Q Consensus 306 ~~al~~ll~~ 315 (1827)
+.+|..++..
T Consensus 1124 i~~~qell~s 1133 (1610)
T KOG1848|consen 1124 IKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 304
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=45.52 E-value=20 Score=26.96 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCC
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKE 296 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e 296 (1827)
|.||+.|+.+|+.+- .+...|.|++.+++
T Consensus 1 ~~vR~~aa~aLg~~~----------~~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLG----------DEEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcC----------CHhHHHHHHHHhcC
Confidence 789999999999863 13445566655543
No 305
>KOG4199|consensus
Probab=45.33 E-value=6.5e+02 Score=30.65 Aligned_cols=299 Identities=17% Similarity=0.187 Sum_probs=157.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHH
Q psy14676 88 LSSPRQAVRKRTIVALSHLVMSCNLQLYT-KLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHI-ERVMPLI 164 (1827)
Q Consensus 88 L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~p~l 164 (1827)
-.+++..+-+++..+|..+...-++ +++ +-+.-++..|.. .++.++.-.-++++..-|-.....-..++ -.+.|++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpd-l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li 194 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPD-LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELI 194 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcc-hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 3467889999999999999887654 333 233444444432 34456666666776666533222212223 3578888
Q ss_pred HhhcccC--chHHHHHHHHHHHHHHHhCCCcccc-------chHH-----HHHHHHHHhcc--CCCCCcccccccCCCCC
Q psy14676 165 LKYSREE--DDELREFCLQACEAFVQRCPKEITP-------HIQS-----ITELCLTYITY--DPNYNYEDEEEGLGGEG 228 (1827)
Q Consensus 165 ~~~~~~~--~delRe~al~ale~~~~~~p~e~~p-------~l~~-----ii~~ll~~l~~--dpn~~~~ddd~~~~~~~ 228 (1827)
++.+..+ ++-+||.+ -++-+++ .|.+|+- |-.. +...+.+.++- ||+.
T Consensus 195 ~~~l~~~gk~~~VRel~-~a~r~l~--~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~------------- 258 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELY-DAIRALL--TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS------------- 258 (461)
T ss_pred HHHHcccCccHHHHHHH-HHHHHhc--CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH-------------
Confidence 8877542 45677654 3333332 3555542 2111 12222222221 2211
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhh-----hHHHHhhcCC-CCHhHH
Q psy14676 229 GGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV-----SPPLIARFKE-REENVK 302 (1827)
Q Consensus 229 ~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v-----~p~L~~~l~e-~ee~VR 302 (1827)
-....-+|.+++-. .++.+.+ +..|...+.+ .+..+|
T Consensus 259 --------------------------------L~~l~~tl~~lAVr-----~E~C~~I~e~GGl~tl~~~i~d~n~~~~r 301 (461)
T KOG4199|consen 259 --------------------------------LVSLSTTLKALAVR-----DEICKSIAESGGLDTLLRCIDDSNEQGNR 301 (461)
T ss_pred --------------------------------HHHHHHHHHHHHHH-----HHHHHHHHHccCHHHHHHHHhhhchhhHH
Confidence 11233344444421 2233333 2345555655 555677
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHH--hhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccc
Q psy14676 303 SDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLS--TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC 380 (1827)
Q Consensus 303 ~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~ 380 (1827)
..+=.+++ ++++... + +++.+.+- ...+.|+....++. .+|.|-+.++..+..|+..-|+.
T Consensus 302 ~l~k~~ls-lLralAG-~-------------DsvKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 302 TLAKTCLS-LLRALAG-S-------------DSVKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHH-HHHHHhC-C-------------CchHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcCcch
Confidence 44444433 2222211 0 22333322 34788888888875 45777777777777787776653
Q ss_pred ccCchhh-HHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhh
Q psy14676 381 LAPSLPA-LIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLI 459 (1827)
Q Consensus 381 l~~~l~~-Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f 459 (1827)
-...+.. .-....+.++..| ..-.+++-|+-.+.+++....+.=
T Consensus 365 sa~~ie~G~a~~avqAmkahP-----------------------------------~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHP-----------------------------------VAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCc-----------------------------------HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2211111 1122334442211 112366677777788876555544
Q ss_pred hhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHH
Q psy14676 460 GDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 492 (1827)
Q Consensus 460 ~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L 492 (1827)
.+.+..=+..|+...+..++..+..|-..|.+|
T Consensus 410 ~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 410 TILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred chHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 566665566777777777888888888887777
No 306
>KOG2759|consensus
Probab=43.55 E-value=32 Score=42.33 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch-hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVILTALLPQLSSPRQAVRKRTIVALSHLVM 108 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~-~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~ 108 (1827)
.+|+..|+..++...||.+-.-|+.=+|+.+++.+..-.-. .-.--..++..|+++++.||.+|+.|+..+..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 56888888888777788888888888999999887532110 01234667888999999999999999987764
No 307
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=43.41 E-value=7.6e+02 Score=30.89 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=33.7
Q ss_pred cccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcccc
Q psy14676 888 GHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITP 934 (1827)
Q Consensus 888 ~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p 934 (1827)
..+...|++++...|-..+...+.+...-....++.++.+|+.-+..
T Consensus 60 ~~k~~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llyt 106 (373)
T PF14911_consen 60 VTKLLEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYT 106 (373)
T ss_pred HHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhhee
Confidence 34566788888877777776566777666777888888888765443
No 308
>KOG1222|consensus
Probab=43.29 E-value=7.2e+02 Score=31.49 Aligned_cols=183 Identities=17% Similarity=0.258 Sum_probs=89.1
Q ss_pred HHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---ccCCCCchhHHHHHHHhhhcCC--C
Q psy14676 17 KTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSR---FGALLPSFHFVILTALLPQLSS--P 91 (1827)
Q Consensus 17 ktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~---~~~~l~~~~~~il~~ll~~L~~--~ 91 (1827)
--++.+++++-+ ..+..--.-+.-|..-+.++.+.+.-.+++-+|+.+.-. +...++. ..++|-+-+.|+- .
T Consensus 485 mK~vRniSqHeg-~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~--~~LvPw~k~~L~pga~ 561 (791)
T KOG1222|consen 485 MKVVRNISQHEG-ATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQS--ENLVPWMKTQLQPGAD 561 (791)
T ss_pred HHHHHHhhhccc-hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhh--ccccHHHHHhhcCCcc
Confidence 345566666553 222222223334444444443444444555555544221 1111111 1344444444432 1
Q ss_pred CHHHHHHHHHHHHHHHHhhch-hHHH--HHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhchhhHHhH---HHHHHHH
Q psy14676 92 RQAVRKRTIVALSHLVMSCNL-QLYT--KLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHI---ERVMPLI 164 (1827)
Q Consensus 92 ~~~VRk~Ai~aL~~l~~~~~~-~~~~--~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la~~~~~~~~p~l---~~i~p~l 164 (1827)
.....-..+.++|..+....- .++. .+++.+++-|+. ..+.+..-+.+..+-.+.++... +.++ ...-..+
T Consensus 562 eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t--r~~miket~~~Ayl 639 (791)
T KOG1222|consen 562 EDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT--RRLMIKETALGAYL 639 (791)
T ss_pred chhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH--HHHHHhhccchHHH
Confidence 223444445566655543322 2333 367778887743 23344555666677777766321 1111 1223345
Q ss_pred HhhcccCchHHHHHHHHHHH-------HHHHhC-CCccccchHHHHHH
Q psy14676 165 LKYSREEDDELREFCLQACE-------AFVQRC-PKEITPHIQSITEL 204 (1827)
Q Consensus 165 ~~~~~~~~delRe~al~ale-------~~~~~~-p~e~~p~l~~ii~~ 204 (1827)
+..+.+...|+|+.|-.++. -|+++. ++.|+-|-.+-+.+
T Consensus 640 IDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~~EkFrwHNsQWLeM 687 (791)
T KOG1222|consen 640 IDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIAGEKFRWHNSQWLEM 687 (791)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhHHHHH
Confidence 56667789999999998874 455554 45566665444443
No 309
>KOG1851|consensus
Probab=43.17 E-value=1.4e+03 Score=33.79 Aligned_cols=183 Identities=11% Similarity=0.014 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHcC-CchhhhHHhhhHHHH-hhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 259 KVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLI-ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 259 kVRraAak~L~~l~~~~~-~~l~~~~~~v~p~L~-~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
.-.++++.|.+-+..... ..+ .+.++..+. ..+....|.||.+++.-+...+=...-.
T Consensus 1502 ~a~~~a~~~~~lm~~~~~~~~l---~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv----------------- 1561 (1710)
T KOG1851|consen 1502 LAKNSALLCHSLMSLSWIGHHL---QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV----------------- 1561 (1710)
T ss_pred HHHHHHHHHHHHHHhhccchhh---HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-----------------
Confidence 345567777766665543 222 222233333 2346778999999888777665211000
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCc
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTE 416 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e 416 (1827)
.-+.....|-..+.+.+.|....||.-+..+|.-+...--..+.+ .......... ...+
T Consensus 1562 --~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~---------------~s~s- 1620 (1710)
T KOG1851|consen 1562 --SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNIL---------------QSKS- 1620 (1710)
T ss_pred --ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhh---------------hhcc-
Confidence 112345677778888888998899997766655554432221111 0000000000 0000
Q ss_pred ccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhc
Q psy14676 417 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGT 496 (1827)
Q Consensus 417 ~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~ 496 (1827)
..--..++|...+++++-..|-.+-.++++.+..+-.+.++. ..+++++-+++.+.-+..
T Consensus 1621 -------------------~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1621 -------------------KDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred -------------------hHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 011256788999999998888555557777777766777777 789999999999998777
Q ss_pred ccCCCC
Q psy14676 497 RTFSPL 502 (1827)
Q Consensus 497 g~~~~~ 502 (1827)
.-+|..
T Consensus 1681 ~D~W~~ 1686 (1710)
T KOG1851|consen 1681 ADTWRE 1686 (1710)
T ss_pred hhhhhh
Confidence 766654
No 310
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=42.17 E-value=1e+02 Score=33.02 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCch--hHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhch
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSF--HFVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNL 112 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~--~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~ 112 (1827)
.+++++.-||..|..++.++|+.+... ...+++.+...+.. ..+.||.+....+...+.....
T Consensus 49 ~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 49 KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999999999876442 23677777777776 6789999999999999987764
No 311
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=41.47 E-value=1.5e+02 Score=30.78 Aligned_cols=75 Identities=16% Similarity=0.368 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhc-----c----c--chHHHHHH
Q psy14676 849 NLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSR-----E----E--DDELREFC 917 (1827)
Q Consensus 849 ~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~-----d----~--~~~vre~a 917 (1827)
+.+.+..+..+|...|.. .+++|+--++.++-++++..++.|...+.+=...|-.+.+ | + ...||+.|
T Consensus 32 s~~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A 110 (122)
T cd03572 32 SVGSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEA 110 (122)
T ss_pred CHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHH
Confidence 556688899999999985 5699999999999999999999999999998776654433 1 1 24589988
Q ss_pred HHHHHHH
Q psy14676 918 LQACEAF 924 (1827)
Q Consensus 918 l~Ale~~ 924 (1827)
-++++.+
T Consensus 111 ~El~~~i 117 (122)
T cd03572 111 QELIKAI 117 (122)
T ss_pred HHHHHHH
Confidence 7777653
No 312
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=41.41 E-value=4.3e+02 Score=31.21 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=96.6
Q ss_pred HHHHHHHHhhCCCC----ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc----CCCCchhHHHHHHH
Q psy14676 13 SIGLKTVISELPLG----SNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFG----ALLPSFHFVILTAL 84 (1827)
Q Consensus 13 ~~~Lktvi~~lp~~----~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~----~~l~~~~~~il~~l 84 (1827)
+..|.+++..+|.. .........+.+--.++..+-+-.|.+.-+.+...+..+++++. +.+...-..-+..+
T Consensus 68 s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~ 147 (255)
T PF10350_consen 68 SLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDEL 147 (255)
T ss_pred HHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHH
Confidence 44677888766643 22333445566656666666443467777888888888888886 33333333677777
Q ss_pred hhhcCCC-CH---HHHHHHHH--HHHHHHHhhch---hHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHHHHHH
Q psy14676 85 LPQLSSP-RQ---AVRKRTIV--ALSHLVMSCNL---QLYTKLIDFLLEGLTTNKS-------TSTNRTYIQCFAAICRQ 148 (1827)
Q Consensus 85 l~~L~~~-~~---~VRk~Ai~--aL~~l~~~~~~---~~~~~l~~~ll~~L~~~~~-------~~~r~~ai~~l~~la~~ 148 (1827)
+..+.+. .. ..|+.|-- ++..+...-+. ..+...|..|++.-..+.. ..-+-.++.++-.+.+.
T Consensus 148 l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~d 227 (255)
T PF10350_consen 148 LEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRD 227 (255)
T ss_pred HHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhc
Confidence 7777765 22 56666643 33333333332 4666777777776533211 24677788888888774
Q ss_pred --hchhhHHhHHHHHHHHHhhcc
Q psy14676 149 --AGHRFAEHIERVMPLILKYSR 169 (1827)
Q Consensus 149 --~~~~~~p~l~~i~p~l~~~~~ 169 (1827)
......+|+.+.+.+.++.+.
T Consensus 228 s~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 228 SKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred chhHHHHHHHHHHHHHHHHHhCC
Confidence 357788888888777766554
No 313
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=41.13 E-value=2.4e+02 Score=31.56 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY 115 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~ 115 (1827)
+..+|+++.++.-. ++....+++..| ..+.+ +.+ ...+..|-+.+. ++.||+.|+.+|.. ++++.+
T Consensus 44 p~aL~~~L~sv~w~-~~~~~~~~~~ll----~~W~~-~~p--~~AL~LL~~~f~--~~~VR~yAv~~L~~----~~d~~l 109 (184)
T PF00613_consen 44 PEALPKLLRSVDWW-NPEEVSEAYQLL----LQWPP-ISP--EDALELLSPNFP--DPFVRQYAVRRLES----LSDEEL 109 (184)
T ss_dssp GGGHHHHHTTSTTT-SHHHHHHHHHHH----HTSHC-TTH--HHHHHCTSTT-----HHHHHHHHHHHCT----S-HHHH
T ss_pred chHHHHHHhhCCCC-chhhHHHHHHHH----HcCCC-CCH--HHHHHHHHhhcc--HHHHHHHHHHHHHH----cCchHH
Confidence 45667777766432 444334444443 45655 222 233444433333 49999999998865 667778
Q ss_pred HHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCc
Q psy14676 116 TKLIDFLLEGLTTN--KSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~--~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e 193 (1827)
.-+++++++.|+-+ .+.. ....|-.-|...+ .|+.++== .+.. ...++..++.....++.+...|+..
T Consensus 110 ~~yLpQLVQaLr~e~~~~s~----L~~fLl~ra~~s~-~ia~~l~W---~L~~--e~~~~~~~~r~~~~~~~~l~~~~~~ 179 (184)
T PF00613_consen 110 LFYLPQLVQALRYEPYHDSP----LARFLLRRALKSP-RIAHQLFW---YLKA--ELHDPEYSERYQLLLEAFLDGCGTH 179 (184)
T ss_dssp HHHHHHHHHHGGGSSSSS-H----HHHHHHHHHHHSH-HHHHHHHH---HHHH--HHTSHHHHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHheeccccccH----HHHHHHHHHHhCH-HHHHHHHH---HHHH--hccCccHHHHHHHHHHHHHHHHHHH
Confidence 88999999999643 2222 2222222222222 34432210 1111 1146666666667778888888775
Q ss_pred c
Q psy14676 194 I 194 (1827)
Q Consensus 194 ~ 194 (1827)
+
T Consensus 180 ~ 180 (184)
T PF00613_consen 180 M 180 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 314
>KOG1848|consensus
Probab=40.73 E-value=8.8e+02 Score=35.05 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhh
Q psy14676 585 ERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALT 619 (1827)
Q Consensus 585 ~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~ 619 (1827)
-...+..+.++..|.+.++...|.+++-.+++..-
T Consensus 1101 we~ll~flkrl~s~~s~e~slsai~~~qell~sii 1135 (1610)
T KOG1848|consen 1101 WEELLQFLKRLHSDISPEISLSAIKALQELLFSII 1135 (1610)
T ss_pred HHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHh
Confidence 34567778888999999999999999988775543
No 315
>KOG3723|consensus
Probab=40.62 E-value=2.8e+02 Score=35.46 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=82.6
Q ss_pred CchHHHHHHHHH--HHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhccCCC-----C
Q psy14676 3 SDKEQLRDISSI--GLKTVISELPLGSNALAANVCRRITGKLSTAIEKQED-VSVQLEALDILSDLLSRFGALL-----P 74 (1827)
Q Consensus 3 ~~~~~~Rdi~~~--~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~-~~v~~~al~iL~~l~~~~~~~l-----~ 74 (1827)
++-+-+-|++.. ++|-|++.=.=..+..-++|..-.+-++..+|..... .+...+-.|.|.+.++.--.-+ .
T Consensus 24 ~d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~siE~YaAaLVDlLd~cL~hnl~p~g~kded 103 (851)
T KOG3723|consen 24 DDSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESIEKYAAALVDLLDSCLEHNLRPFGKKDED 103 (851)
T ss_pred ChHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccCccCCCCCCC
Confidence 444556666654 6777766544344455678899999999999964322 2334445566655554422111 2
Q ss_pred chhHHHHHHHhhh--cCCCCHHHHHHHH-HHHHHHHHhhc---hh---HHHHHHHHHHHhccCCCCHHHH-------HHH
Q psy14676 75 SFHFVILTALLPQ--LSSPRQAVRKRTI-VALSHLVMSCN---LQ---LYTKLIDFLLEGLTTNKSTSTN-------RTY 138 (1827)
Q Consensus 75 ~~~~~il~~ll~~--L~~~~~~VRk~Ai-~aL~~l~~~~~---~~---~~~~l~~~ll~~L~~~~~~~~r-------~~a 138 (1827)
+-|..|-.-++.. |....+.+-+-|+ .|...+....+ .+ .|.--.-....-|+.. +..+- -..
T Consensus 104 ~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~h-TEv~~~siLSgn~~L 182 (851)
T KOG3723|consen 104 TPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADH-TEVIVKSILSGNTML 182 (851)
T ss_pred CchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCc-hHHHHHHHhccchHH
Confidence 2243333333322 3333222222222 22222222211 11 1111011111122221 11111 125
Q ss_pred HHHHHHHHHHhchhhHHhHHHHHHHHHh
Q psy14676 139 IQCFAAICRQAGHRFAEHIERVMPLILK 166 (1827)
Q Consensus 139 i~~l~~la~~~~~~~~p~l~~i~p~l~~ 166 (1827)
++.+..+++..|+.+.||++.+++++.+
T Consensus 183 LrvlS~Vye~~P~~i~PhlP~l~~lL~q 210 (851)
T KOG3723|consen 183 LRVLSAVYEKQPQPINPHLPELLALLSQ 210 (851)
T ss_pred HHHHHHHHhcCCCccCcccHHHHHHhcC
Confidence 7788999999999999999999998876
No 316
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=40.50 E-value=4.1e+02 Score=37.21 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCcccccCchhhHHHHHHHHh
Q psy14676 365 DCLALLRELVQTLPGCLAPSLPALIPDVTSVA 396 (1827)
Q Consensus 365 a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L 396 (1827)
..+.+|.-+..++|-. ..+|+.+.|+++-+.
T Consensus 541 ~~Lvllklv~~lFPTS-D~~HpVVTPalllm~ 571 (840)
T PF04147_consen 541 SDLVLLKLVGTLFPTS-DFRHPVVTPALLLMS 571 (840)
T ss_pred hHHHHHHHHHHhcCcc-cccCcchhHHHHHHH
Confidence 4444555555566542 356788888876553
No 317
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.16 E-value=68 Score=35.93 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=52.6
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHhh---ccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q psy14676 1396 AIWAQLFLHCECQEEGTRNVVAECLGKLT---LIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1396 ~i~~~L~~~~~~~~e~vR~~aAecLGkL~---~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~ 1460 (1827)
.-|+.+++.|-+++..+|..|.+.++... .++|...+|.|..+..++++.+|..+...++.+...
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 34555566666677889999887776655 588999999999999999999999999999888743
No 318
>KOG3687|consensus
Probab=39.30 E-value=1.2e+03 Score=32.21 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHh-hhcCC----CCHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy14676 52 VSVQLEALDILSDLLSRFGALLPSFHFVILTALL-PQLSS----PRQAVRKRTIVALSHLVMSCNLQLYTKLIDF 121 (1827)
Q Consensus 52 ~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll-~~L~~----~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ 121 (1827)
..||...+++|.+++-.+-. -|..+||..+. -.+++ .+..||+.+..+|.+++++|....+..+++.
T Consensus 444 ~~Vrik~~~~l~~~~l~nr~---~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi 515 (1697)
T KOG3687|consen 444 GAVRIKVLDVLSFVLLINRQ---FYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDI 515 (1697)
T ss_pred ceEEEeeHHHHHHHHhhhhh---hhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHH
Confidence 33444444444444333222 14456666543 33443 3468999999999999999998876665443
No 319
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=36.73 E-value=2.9e+02 Score=33.62 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhcc--CCCCchhH
Q psy14676 4 DKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQE---DVSVQLEALDILSDLLSRFG--ALLPSFHF 78 (1827)
Q Consensus 4 ~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~---~~~v~~~al~iL~~l~~~~~--~~l~~~~~ 78 (1827)
++..+...++..|-.++..=+..... ...++++.+++.+.+.. +.+++..|+.+|+.++..=. ..+ ...
T Consensus 117 ~D~~i~~~a~~iLt~Ll~~~~~~~~~----~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f--~~~ 190 (312)
T PF03224_consen 117 NDSFIQLKAAFILTSLLSQGPKRSEK----LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF--WKS 190 (312)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTT--HH----HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH--HTH
T ss_pred CCHHHHHHHHHHHHHHHHcCCccccc----hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH--Hhc
Confidence 45668888999999998887775531 12567788888775432 34566888999999985421 111 124
Q ss_pred HHHHHHhhhc-----CC--CCHHHHHHHHHHHHHHHHhhc--hhHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Q psy14676 79 VILTALLPQL-----SS--PRQAVRKRTIVALSHLVMSCN--LQLY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ 148 (1827)
Q Consensus 79 ~il~~ll~~L-----~~--~~~~VRk~Ai~aL~~l~~~~~--~~~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~ 148 (1827)
..++.+.+.| .+ ....+...++.|+=.+.-.-. +.+. ..+++.++..++......+.|-++.++-.++..
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 5666666666 22 234677777766654432211 1111 114566666666556677888888888888877
Q ss_pred hchhhHHhH--HHHHHHHHhhcc--cCchHHHH
Q psy14676 149 AGHRFAEHI--ERVMPLILKYSR--EEDDELRE 177 (1827)
Q Consensus 149 ~~~~~~p~l--~~i~p~l~~~~~--~~~delRe 177 (1827)
.++.+.+-+ .++.|.+-.... -.|+|+.+
T Consensus 271 ~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 271 APKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 765544322 234444433322 25777765
No 320
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=35.90 E-value=1.1e+02 Score=32.08 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=57.0
Q ss_pred hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHH-HHHHHhhhhcCC---CChhHHHHHHHHHHHHHHhCCC
Q psy14676 1216 DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLN-KVTVELAPLVSE---SDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1216 ~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~-~ll~~L~~ll~d---~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
+++..|...++..+..+..-|+..|+.+++|.|..+...... ..+.+|..++.. .+..|+.-+++++......++.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 445556666667778888899999999999988876554444 566677777765 5888999999988887775543
No 321
>KOG2140|consensus
Probab=35.81 E-value=4.5e+02 Score=33.60 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=12.1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHH
Q psy14676 86 PQLSSPRQAVRKRTIVALSHLVM 108 (1827)
Q Consensus 86 ~~L~~~~~~VRk~Ai~aL~~l~~ 108 (1827)
..+.-.+..+--.+..+|++++.
T Consensus 245 r~f~RnDk~~c~~~~kfiahLin 267 (739)
T KOG2140|consen 245 RSFRRNDKVSCLNASKFIAHLIN 267 (739)
T ss_pred HHhcccchHHHHHHHHHHHHHHH
Confidence 33444455555555566665554
No 322
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=35.60 E-value=30 Score=39.45 Aligned_cols=9 Identities=33% Similarity=0.707 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy14676 139 IQCFAAICR 147 (1827)
Q Consensus 139 i~~l~~la~ 147 (1827)
+..+|+|+.
T Consensus 93 l~mvGaiCD 101 (314)
T PF06524_consen 93 LGMVGAICD 101 (314)
T ss_pred cchhhhhhc
Confidence 344444443
No 323
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.58 E-value=5.7e+02 Score=27.24 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=49.8
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH--HHHHH-HHhhccc---CchHHHHHHHHHHHHHHHhCC
Q psy14676 118 LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE--RVMPL-ILKYSRE---EDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 118 l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~--~i~p~-l~~~~~~---~~delRe~al~ale~~~~~~p 191 (1827)
.+..+-.+|....++.+...++..+.++...+|.+|...+. +++.- +.+.+.. .+.++++.++..+..|...++
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 34455555644345666677777888888888877765442 34443 4444432 356899999999999999876
Q ss_pred Cc
Q psy14676 192 KE 193 (1827)
Q Consensus 192 ~e 193 (1827)
.+
T Consensus 119 ~~ 120 (141)
T cd03565 119 GS 120 (141)
T ss_pred CC
Confidence 53
No 324
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=35.03 E-value=1.5e+02 Score=31.19 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=52.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch--hHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhhc
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF--HFVILTALLPQLSSP--RQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~--~~~il~~ll~~L~~~--~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
|..-+. ..++.++.-||.+|..++.++|+.+... ...+++.|...+.++ .+.||++....+........
T Consensus 42 l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 42 LKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 333334 3589999999999999999999876442 236777777776653 24599999999999998774
No 325
>KOG2213|consensus
Probab=33.90 E-value=1e+03 Score=29.66 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=40.9
Q ss_pred cccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhh
Q psy14676 578 IKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKN 648 (1827)
Q Consensus 578 ~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~ 648 (1827)
|+.-+.....-++.-+.+..|.+.-||..|.+=|..+.+. ..++-+.++|.++|.|.
T Consensus 52 fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--------------d~~~rv~d~l~qLLnk~ 108 (460)
T KOG2213|consen 52 FKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--------------DALSRVNDVLVQLLNKA 108 (460)
T ss_pred HhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--------------chhhhhHHHHHHHHHHH
Confidence 3444444556677778888999999999999877666532 34566678888888855
No 326
>KOG2140|consensus
Probab=33.31 E-value=1.1e+03 Score=30.30 Aligned_cols=115 Identities=13% Similarity=0.163 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC---CCHHHHHHHHHHHHHHHHhh
Q psy14676 34 VCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS---PRQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~---~~~~VRk~Ai~aL~~l~~~~ 110 (1827)
+.++|+=.+-.+.... |..+...++..++-++.. .+. |..-.|+.+.-.|.. .+..|--.-+.-.|.-....
T Consensus 235 LlkrLilqf~r~f~Rn-Dk~~c~~~~kfiahLinq---~Va-hEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~V 309 (739)
T KOG2140|consen 235 LLKRLILQFKRSFRRN-DKVSCLNASKFIAHLINQ---QVA-HEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEV 309 (739)
T ss_pred HHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHh
Confidence 3444444444555433 555555666666555443 221 233344444444444 44443332222222222223
Q ss_pred chhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh
Q psy14676 111 NLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH 156 (1827)
Q Consensus 111 ~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~ 156 (1827)
++..++.+++.+-.-|... +.-+..=..+-.+.....+.|..|
T Consensus 310 Spr~~n~IfErlR~ILhe~---Eld~rvqy~iEtlf~iRkdkfk~~ 352 (739)
T KOG2140|consen 310 SPRALNGIFERLRYILHEG---ELDRRVQYMIETLFQIRKDKFKSH 352 (739)
T ss_pred ChHHHhHHHHHHHHHHhHh---hHHHHHHHHHHHHHHHHHHhhccC
Confidence 3444444554444444322 122222233444444444555443
No 327
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=32.59 E-value=2.6e+02 Score=30.51 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCC
Q psy14676 1047 SALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYD 1126 (1827)
Q Consensus 1047 ~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~ 1126 (1827)
....|.-++.++..+....+..|..+-+-.+.....=..+.+.+++.+..+.+.+-..+++.+..+...++ ..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~-------~~ 107 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR-------SH 107 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HH
Confidence 34677888888886666666677633000122222235667777777776668888899999988887765 34
Q ss_pred cchhHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHH
Q psy14676 1127 FAPFTSDIYQCTLVRLKAADI-DQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1127 ~~~~l~~l~~~ll~~L~~~D~-d~eVre~Ai~alg~l~~~ 1165 (1827)
++..++-++..++.++...+. ..+-|+.+++++..+.+.
T Consensus 108 Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 108 LKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 556677777777775554444 356888899998888764
No 328
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=32.25 E-value=3.6e+02 Score=28.71 Aligned_cols=93 Identities=11% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHH
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLE 124 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~ 124 (1827)
+|+..-.+.+|.+.. .+. .....+.++..-|+++++.|.-+|+..|..++..|+..+-. .++..++.
T Consensus 17 ~dw~~ileicD~In~-----~~~---~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 17 EDWEAIQAFCEQINK-----EPE---GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CCHHHHHHHHHHHHc-----CCc---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 466655555555532 111 12357788888899999999999999999999999886432 34455666
Q ss_pred hccC-----CCCHHHHHHHHHHHHHHHHHhc
Q psy14676 125 GLTT-----NKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 125 ~L~~-----~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
.+.. .....|+..++..+...++..+
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5532 2457899999999998887665
No 329
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=31.93 E-value=3.3e+02 Score=29.02 Aligned_cols=75 Identities=21% Similarity=0.217 Sum_probs=54.1
Q ss_pred hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhH-HHHHHHhhhhcCC------CChhHHHHHHHHHHHHHHh
Q psy14676 1216 DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEML-NKVTVELAPLVSE------SDLHIAQLTLTLLTSIAKI 1288 (1827)
Q Consensus 1216 ~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~-~~ll~~L~~ll~d------~D~~l~~~al~~L~~l~~~ 1288 (1827)
+++..+...+...+..+-.-|+..|+.+++|.|..+..+.. ..++.+|..++++ .+..|+.-++.++..-...
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444555555566667778899999999999987665533 4677888888863 5788888888888776665
Q ss_pred CC
Q psy14676 1289 QP 1290 (1827)
Q Consensus 1289 ~~ 1290 (1827)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 43
No 330
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=31.55 E-value=5.1e+02 Score=33.88 Aligned_cols=108 Identities=10% Similarity=0.060 Sum_probs=79.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--hhhHHhHH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG--HRFAEHIE 158 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~--~~~~p~l~ 158 (1827)
...++....|-++.+|--+..+++..+...++-.+.-........+..+.+..+|......+-.++.+.| +.+...++
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3444555677889999999999999888876654443322333333456678899999999999999887 34567778
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 159 RVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 159 ~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
.+...+++++..+.+-+|-.+++.|..+..
T Consensus 357 RFk~rILE~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 357 RFKDRILEFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 888888888877777799888887766543
No 331
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.69 E-value=1.2e+03 Score=30.80 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHh
Q psy14676 259 KVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLC 338 (1827)
Q Consensus 259 kVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1827)
.+|--+...|+..+...|+++.... .+.+.--.+.|.++.||..+...+.-++.+.. . .++.+.
T Consensus 290 ~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p----------~----~d~ir~ 353 (740)
T COG5537 290 VIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIP----------H----TDAIRR 353 (740)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCC----------c----chHHHH
Confidence 6788888888888888776543321 11122233578899999999999988875421 1 134556
Q ss_pred hHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHh
Q psy14676 339 LLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQT 376 (1827)
Q Consensus 339 ~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~v 376 (1827)
.++.....|+..+.. |-+- ||.++...+..+...
T Consensus 354 f~eRFk~rILE~~r~---D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 354 FVERFKDRILEFLRT---DSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHHHhh---ccch-hhHHHHHHHHHHHHh
Confidence 666666666666555 5555 999999988887764
No 332
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.51 E-value=6.4e+02 Score=27.46 Aligned_cols=97 Identities=19% Similarity=0.311 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCch----------hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH---HHH
Q psy14676 51 DVSVQLEALDILSDLLSRFGALLPSF----------HFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL---YTK 117 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~l~~~----------~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~---~~~ 117 (1827)
+...|.-+|++|..+++..|+.+..+ ...+.+.++..+.++++.+=.+++..+..+.......+ +.-
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888999999999998877631 23566677777777678888889998888887765432 233
Q ss_pred HHHHHHHhc-cCCC-CHHHHHHHHHHHHHHHH
Q psy14676 118 LIDFLLEGL-TTNK-STSTNRTYIQCFAAICR 147 (1827)
Q Consensus 118 l~~~ll~~L-~~~~-~~~~r~~ai~~l~~la~ 147 (1827)
++..++..+ ..+. ....|..+++++..+++
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 445555533 3222 34578888888888885
No 333
>KOG2973|consensus
Probab=28.84 E-value=2.7e+02 Score=33.42 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHhc
Q psy14676 49 QEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN--LQLYTKLIDFLLEGL 126 (1827)
Q Consensus 49 ~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~--~~~~~~l~~~ll~~L 126 (1827)
..+|.||..|.+.+.-+..+-+..+..+....++.+.+.+.+..+ -.-|+.|+.+++.... +.+++.++..++..+
T Consensus 14 ~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~k~l~~~~ 91 (353)
T KOG2973|consen 14 SLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLLKVLMDML 91 (353)
T ss_pred cCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 457899999999998888884444555666888888888887665 5567778888877542 223333233333333
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy14676 127 TTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 127 ~~~~~~~~r~~ai~~l~~la~ 147 (1827)
.++. ....+.++..+..+++
T Consensus 92 ~~p~-~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 92 TDPQ-SPLADLICMLLSNLSR 111 (353)
T ss_pred cCcc-cchHHHHHHHHHHhcc
Confidence 3322 2344555555555554
No 334
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=28.16 E-value=74 Score=25.21 Aligned_cols=28 Identities=39% Similarity=0.334 Sum_probs=23.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLV 107 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~ 107 (1827)
.++.+++.|+++++.+++.|+.+|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777788888999999999999875
No 335
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=27.13 E-value=2.9e+02 Score=29.43 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=53.0
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhh--hhHHH-HHHhhcc---cchHHHHHHHHHHHHHHhhCCC
Q psy14676 858 DFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE--RVMPL-ILKYSRE---EDDELREFCLQACEAFVQRCPK 930 (1827)
Q Consensus 858 ~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~--~ilP~-ll~~l~d---~~~~vre~al~Ale~~v~~~~~ 930 (1827)
..+...+..++++.+...++.++..+.+.||..|...+. +.+.- +++.+.. ...+|++-.++-+..|...++.
T Consensus 41 ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 41 RALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 334445654567888888999999999999999986554 34543 4555542 2457999999999999877654
No 336
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=27.10 E-value=5.3e+02 Score=26.14 Aligned_cols=72 Identities=8% Similarity=0.179 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc---------ccCchHHHHHHHHHHH
Q psy14676 114 LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS---------REEDDELREFCLQACE 184 (1827)
Q Consensus 114 ~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~---------~~~~delRe~al~ale 184 (1827)
.....+..+..+|.+. ++.+.-.++..+-.+....+++|..++..-. ++...+ .+.+..+|+.+++.++
T Consensus 34 ~~~~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 34 GPKEAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred cHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 3455677777777654 6778888889999999999888877664321 222221 1247789999999888
Q ss_pred HHH
Q psy14676 185 AFV 187 (1827)
Q Consensus 185 ~~~ 187 (1827)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 885
No 337
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=26.61 E-value=9e+02 Score=30.11 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC-C
Q psy14676 52 VSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT-N 129 (1827)
Q Consensus 52 ~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~-~ 129 (1827)
.++....+.+|+.++.+-.- +.+ .+.++..++..+|.+. .-+-++.||.-.+--+++ .+.+.++.++..|++ .
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~-~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~-s~~k~L~~iL~kLs~i~ 285 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSH-FSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPD-SMKKLLPSILLKLSKIS 285 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhhc
Confidence 45677778888888776543 333 4668999998888762 224455555555555554 356677888888854 3
Q ss_pred CCHHHHHHHHHHHHHHHHHh---chhh-HHhHHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHhC
Q psy14676 130 KSTSTNRTYIQCFAAICRQA---GHRF-AEHIERVMPLILKYSREE--DDELREFCLQACEAFVQRC 190 (1827)
Q Consensus 130 ~~~~~r~~ai~~l~~la~~~---~~~~-~p~l~~i~p~l~~~~~~~--~delRe~al~ale~~~~~~ 190 (1827)
.+..+.--.++.+..+++.- ...| ..++..++...+++.+.. +.=+...|...+..|--+|
T Consensus 286 tt~~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~~~ry~~yiv~LA~hvi~~WF~~c 352 (356)
T PF03542_consen 286 TTPNMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQPSRYSQYIVSLAHHVIAMWFLKC 352 (356)
T ss_pred cchhhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 34556667888888887633 2233 446677888888887632 2334456677777777666
No 338
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=26.35 E-value=37 Score=41.97 Aligned_cols=9 Identities=56% Similarity=0.981 Sum_probs=3.6
Q ss_pred CCCCCcccH
Q psy14676 430 YSDDDDMSW 438 (1827)
Q Consensus 430 ~~d~~d~~w 438 (1827)
+.+.++..|
T Consensus 251 ~~~sd~~~~ 259 (458)
T PF10446_consen 251 HSDSDDHVW 259 (458)
T ss_pred ccccchhhh
Confidence 443334334
No 339
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=25.70 E-value=4e+02 Score=30.11 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=44.7
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCC
Q psy14676 1496 VVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSN 1575 (1827)
Q Consensus 1496 l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~l 1575 (1827)
..+.+.+-++++++.+|..|+-++-.+... .....+...+...+.+.. .-||.+.-.+|+.++...|+.
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~--------~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEE--------YYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS---------HHHHHHHHHHHHHHCTT-HHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCch--------HHHHHHHHHHHHHHHHhCHHH
Confidence 446777778888888888887777665544 333344444433333322 268888888888888888887
Q ss_pred c
Q psy14676 1576 M 1576 (1827)
Q Consensus 1576 i 1576 (1827)
+
T Consensus 190 v 190 (213)
T PF08713_consen 190 V 190 (213)
T ss_dssp H
T ss_pred H
Confidence 7
No 340
>KOG2973|consensus
Probab=25.54 E-value=2.9e+02 Score=33.19 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=48.3
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH----HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK----LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH 156 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~----l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~ 156 (1827)
+..+...|.+++|.||+.|+.-+..+... +-+.|.+ .++.+.+-+.. ..+ .+.+.++++.++...+-+ ..-
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l~-~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEELR-KKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHHH-HHH
Confidence 45567788899999999999888777766 3333332 23334333332 222 456667777777544311 111
Q ss_pred HHHHHHHHHhhcccC
Q psy14676 157 IERVMPLILKYSREE 171 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~ 171 (1827)
++.++.+++..+.++
T Consensus 80 l~~~~k~l~~~~~~p 94 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDP 94 (353)
T ss_pred HHHHHHHHHHHhcCc
Confidence 233444445444444
No 341
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=25.50 E-value=1.1e+02 Score=29.95 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHH
Q psy14676 871 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAF 924 (1827)
Q Consensus 871 ~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~ 924 (1827)
..|-+++-.++++..++|..+-+|+++++..+-....| ...++.++-.++..|
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eF 56 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEF 56 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 35677788889999999999999999999997777764 667888887777554
No 342
>PF14961 BROMI: Broad-minded protein
Probab=25.13 E-value=6.2e+02 Score=36.01 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=80.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----H
Q psy14676 40 GKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----L 114 (1827)
Q Consensus 40 P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~ 114 (1827)
..+.+.++.+...++|.+|+.+|..+ ..++.+.. +++.+...|...|.||++.+..++..-....-...+-. .
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~--p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEi 241 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSA--PPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREI 241 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcC--ChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHH
Confidence 55556666566788999999988654 33455544 78999999999999999999998777666665554332 3
Q ss_pred HHHHHHHHHHhccC----------C---CCHHH--HHHHHHHHHHHHHHhch----hhHHhHHHHHHHHHhhccc
Q psy14676 115 YTKLIDFLLEGLTT----------N---KSTST--NRTYIQCFAAICRQAGH----RFAEHIERVMPLILKYSRE 170 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~----------~---~~~~~--r~~ai~~l~~la~~~~~----~~~p~l~~i~p~l~~~~~~ 170 (1827)
+..+..++...+.+ + ..+.+ --..+..+...-+..+. +-.+|+++|+.-.+..++.
T Consensus 242 YtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 242 YTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 44455554433311 0 00111 12234555555555554 4466777777776666543
No 343
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=24.89 E-value=7.3e+02 Score=25.08 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=50.5
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH-----HHHHHHHh----c-cCCCCHHHHHHHHHHHHHH
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK-----LIDFLLEG----L-TTNKSTSTNRTYIQCFAAI 145 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~-----l~~~ll~~----L-~~~~~~~~r~~ai~~l~~l 145 (1827)
....++..+..-|.++++.+.-+|...|..++..|++..... ++..++.. . ..+.+..+|+.+.+++...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999998775432 22233321 1 1234567888888777654
Q ss_pred H
Q psy14676 146 C 146 (1827)
Q Consensus 146 a 146 (1827)
+
T Consensus 114 ~ 114 (115)
T cd00197 114 A 114 (115)
T ss_pred h
Confidence 3
No 344
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=24.76 E-value=1.7e+02 Score=31.85 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=74.2
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH--
Q psy14676 42 LSTAIEK-QEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-- 115 (1827)
Q Consensus 42 Ll~~l~~-~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-- 115 (1827)
++..+.. ...+++|..++-+++.+++..+.. +...+...+-..+..++..-...++.++..+-+..++- +|
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~---~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~ 84 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAAREE---FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLS 84 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCT
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 3344432 235678889999999886444442 23333333334444433345666777777776655432 11
Q ss_pred HHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHhc--hhhHHhHHHHHHHHHhhcc-cCchH-HHHHHHHHH
Q psy14676 116 TKLIDFLLEGLT-TNKSTSTNRTYIQCFAAICRQAG--HRFAEHIERVMPLILKYSR-EEDDE-LREFCLQAC 183 (1827)
Q Consensus 116 ~~l~~~ll~~L~-~~~~~~~r~~ai~~l~~la~~~~--~~~~p~l~~i~p~l~~~~~-~~~de-lRe~al~al 183 (1827)
..+++.++.... ...+..+...+++++.+-|-... ..+. ..-++.+.+..+ .+++. +|..|..+|
T Consensus 85 eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~---~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 85 EGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS---KNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH---HHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH---HHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 123444444443 34567788888888887764322 2222 334556666664 44455 787776654
No 345
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.20 E-value=8.7e+02 Score=25.69 Aligned_cols=76 Identities=14% Similarity=0.270 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH--HHHHHHHHhhccc-C-chH--HHHHHHHHHHHHHHh
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI--ERVMPLILKYSRE-E-DDE--LREFCLQACEAFVQR 189 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l--~~i~p~l~~~~~~-~-~de--lRe~al~ale~~~~~ 189 (1827)
...+..+-.+|.. .++.++..++..+..+...+|..|...+ ..++..+.+.+.. . .+. ||+.++..+..|...
T Consensus 41 kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 41 KEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4455666667766 5788999999999999999999887665 3466666665442 2 233 999999999999998
Q ss_pred CCC
Q psy14676 190 CPK 192 (1827)
Q Consensus 190 ~p~ 192 (1827)
++.
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 843
No 346
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.52 E-value=95 Score=24.56 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHhhhh
Q psy14676 1317 LKQVILNAFTPTSEEVKSAASYTLGSIA 1344 (1827)
Q Consensus 1317 l~~~~l~~~~~~s~eVr~aAa~aLG~i~ 1344 (1827)
.++.+++.+.+++++++..|..+|++++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777888889999999999998865
No 347
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=23.25 E-value=8.6e+02 Score=25.96 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=64.3
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch---hhHHhHH
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH---RFAEHIE 158 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~---~~~p~l~ 158 (1827)
..+++.|+-.-..++|.|-.||.+ ..+.+++ ++-+++.|.+. +-..|-..++.+..+++..-. ...+|..
T Consensus 11 ~~~L~~L~aS~qSi~kaa~fAlk~--~~~~edL----~~cIle~le~~-~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~ 83 (139)
T PF12243_consen 11 TQLLRRLNASQQSIQKAAQFALKN--RDMEEDL----WSCILEQLEKE-NLNTRINIFYFIDSLCESSQKSKKYNYPYVS 83 (139)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHc--cccHHHH----HHHHHHHHhcc-chhhHHHHHHHHHHHHHHHHhcccccchhHH
Confidence 345566666667899999999988 5555544 45556666554 566799999999999886531 2345554
Q ss_pred ---HHHHHHHhhcccCc-h--HHHHHHHHHHHHHHHhC
Q psy14676 159 ---RVMPLILKYSREED-D--ELREFCLQACEAFVQRC 190 (1827)
Q Consensus 159 ---~i~p~l~~~~~~~~-d--elRe~al~ale~~~~~~ 190 (1827)
.-+|.++..+-.++ . .=+..+...|..|-.++
T Consensus 84 ~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k~ 121 (139)
T PF12243_consen 84 MLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKKK 121 (139)
T ss_pred HHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHcC
Confidence 34444444433222 2 23457777788887765
No 348
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.67 E-value=3.1e+02 Score=29.31 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh
Q psy14676 77 HFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH 156 (1827)
Q Consensus 77 ~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~ 156 (1827)
.+.+...++..|.++++.|++.|..||-. ..+..+.+|-+++-.-+ ++...|....... +....+.-=..|
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~----~k~~~l~pY~d~L~~Ll---dd~~frdeL~~f~--~~~~~~~I~~eh 85 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLT----WKDPYLTPYKDNLENLL---DDKTFRDELTTFN--LSDESSVIEEEH 85 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCcHHHHhHHHHHHHHc---CcchHHHHHHhhc--ccCCcCCCCHHH
Q ss_pred HHHHHHHHHhhc
Q psy14676 157 IERVMPLILKYS 168 (1827)
Q Consensus 157 l~~i~p~l~~~~ 168 (1827)
=+.+||+++.++
T Consensus 86 R~~l~pvvlRIL 97 (141)
T PF07539_consen 86 RPELMPVVLRIL 97 (141)
T ss_pred HhHHHHHHHHHH
No 349
>KOG2153|consensus
Probab=22.34 E-value=8.6e+02 Score=32.22 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHh-CCCccccchHHHHHHHHH
Q psy14676 134 TNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQR-CPKEITPHIQSITELCLT 207 (1827)
Q Consensus 134 ~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~-~p~e~~p~l~~ii~~ll~ 207 (1827)
.-..|++|...+..+.+++ +|.+.++..++...++....++..|++++..+... ++..++-.+-.++..+++
T Consensus 301 l~~vav~c~~~Ll~a~pHF--N~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK 373 (704)
T KOG2153|consen 301 LAQVAVQCACELLEAVPHF--NLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLK 373 (704)
T ss_pred HHHHHHHHHHHHHHhhhhc--cHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhh
Confidence 3445677777777666654 57788999988888888888999999999887763 334444343444444443
No 350
>PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation. RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B ....
Probab=20.09 E-value=2.3e+02 Score=31.46 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=47.3
Q ss_pred ccCchhhhhHHHHHHHHHhhhhcc--CChHHHHHHHHhhcc--chhh-HHHH-----HHHHHHHHHhh--ChHHHHHHHH
Q psy14676 1627 DDGLDIRKAAFECMYTLLDTCLDR--VDMFEFLNHLESGLR--DHYD-IKML-----TYLMLARLAQM--TPAALLQRLE 1694 (1827)
Q Consensus 1627 ddgl~~Rk~a~e~~~~ll~~~~~~--~~~~~~~~~~~~gl~--d~~d-ik~l-----~~~~l~~l~~~--~p~~~~~~l~ 1694 (1827)
.|+-++|.++++|...||...+.. -....|++.+...++ -+.| +|-. |+++|-++++. -|....+.|.
T Consensus 78 ~~~~~vk~av~~~~Dall~kaFs~~~~~~~~f~n~LLV~mGLLKsEdK~k~i~~l~G~l~~Leh~vqq~YFp~~~~~~L~ 157 (183)
T PF07834_consen 78 NDESEVKSAVLQCIDALLKKAFSSASFQSNSFLNSLLVHMGLLKSEDKFKPISNLPGPLLALEHAVQQDYFPKSTRPLLQ 157 (183)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHCSTTS-HHHHHHHHHHHTTSSSSSSHHHHHSHHHHHHHHHHHHCCSTTS-GGGHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcccccccccCCCCCCchHHHHHHHHhhhhhccHHHHHHHH
Confidence 456899999999999999998764 457788887775333 2333 3322 77777777663 3666666665
Q ss_pred HhhH
Q psy14676 1695 RIVE 1698 (1827)
Q Consensus 1695 ~l~~ 1698 (1827)
.|+.
T Consensus 158 aFls 161 (183)
T PF07834_consen 158 AFLS 161 (183)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 5554
Done!