Query psy14676
Match_columns 1827
No_of_seqs 506 out of 1776
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:49:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 9E-103 3E-107 1116.4 72.6 1117 3-1784 97-1230(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 1.2E-56 4.2E-61 640.6 77.8 1141 38-1827 7-1230(1230)
3 2bpt_A Importin beta-1 subunit 100.0 1E-35 3.5E-40 409.7 71.2 685 3-1202 106-856 (861)
4 4fdd_A Transportin-1; heat rep 100.0 8.5E-36 2.9E-40 409.8 64.8 650 4-1204 102-785 (852)
5 2bpt_A Importin beta-1 subunit 100.0 2.2E-34 7.5E-39 396.5 67.0 762 3-1286 16-856 (861)
6 1qgr_A Protein (importin beta 100.0 5.7E-34 1.9E-38 393.1 67.7 667 35-1203 126-871 (876)
7 1qgr_A Protein (importin beta 100.0 9E-34 3.1E-38 391.1 67.5 777 42-1289 6-873 (876)
8 4fdd_A Transportin-1; heat rep 100.0 3.3E-33 1.1E-37 384.0 66.7 703 40-1253 48-792 (852)
9 1b3u_A Protein (protein phosph 100.0 3.3E-30 1.1E-34 338.8 45.8 562 2-923 20-584 (588)
10 1b3u_A Protein (protein phosph 100.0 1.1E-27 3.7E-32 314.8 41.7 545 833-1568 26-585 (588)
11 1ibr_B P95, importin beta-1 su 99.9 1.2E-20 4E-25 239.9 28.8 303 35-396 126-460 (462)
12 1wa5_C Importin alpha RE-expor 99.8 1.2E-17 4.1E-22 231.8 46.6 587 6-729 99-770 (960)
13 1ibr_B P95, importin beta-1 su 99.8 8.3E-18 2.8E-22 213.6 35.7 411 42-645 6-460 (462)
14 1wa5_C Importin alpha RE-expor 99.8 2.6E-15 9E-20 208.4 61.9 440 40-648 38-560 (960)
15 2x1g_F Cadmus; transport prote 99.8 1.4E-15 4.8E-20 211.9 49.5 571 6-711 142-818 (971)
16 2x1g_F Cadmus; transport prote 99.7 4.1E-14 1.4E-18 197.1 57.6 384 41-494 43-493 (971)
17 2x19_B Importin-13; nuclear tr 99.7 3.1E-14 1.1E-18 198.2 53.3 294 41-396 61-401 (963)
18 2x19_B Importin-13; nuclear tr 99.7 1.4E-13 4.8E-18 191.7 56.4 738 586-1439 24-908 (963)
19 2jdq_A Importin alpha-1 subuni 99.7 9.7E-15 3.3E-19 184.8 29.5 388 3-493 31-442 (450)
20 1w63_A Adapter-related protein 99.7 1.2E-13 4.2E-18 181.6 40.8 392 1002-1459 109-540 (618)
21 3m1i_C Exportin-1; heat repeat 99.7 1.3E-12 4.3E-17 183.0 52.2 376 35-495 136-619 (1049)
22 2vgl_B AP-2 complex subunit be 99.6 3.5E-13 1.2E-17 176.8 40.2 428 1003-1523 89-531 (591)
23 3ibv_A Exportin-T; karyopherin 99.6 8.3E-13 2.8E-17 181.1 45.5 497 50-670 205-773 (980)
24 3m1i_C Exportin-1; heat repeat 99.6 3.4E-11 1.2E-15 168.6 59.4 501 46-664 57-617 (1049)
25 2jdq_A Importin alpha-1 subuni 99.6 1.3E-13 4.4E-18 174.5 31.1 404 81-664 22-442 (450)
26 2z6g_A B-catenin; FULL-length, 99.6 1.8E-13 6.1E-18 184.9 33.0 528 1003-1597 118-683 (780)
27 1wa5_B Importin alpha subunit; 99.6 8.6E-14 3E-18 180.4 25.8 388 3-494 98-510 (530)
28 2z6g_A B-catenin; FULL-length, 99.5 1.3E-12 4.4E-17 176.5 34.7 456 1002-1526 152-665 (780)
29 4b8j_A Importin subunit alpha- 99.5 1.2E-12 4.2E-17 169.5 31.1 389 3-493 85-495 (528)
30 2vgl_B AP-2 complex subunit be 99.5 2.7E-12 9.4E-17 168.2 33.7 462 1008-1570 57-532 (591)
31 1wa5_B Importin alpha subunit; 99.5 8.4E-13 2.9E-17 171.1 27.2 397 80-614 88-508 (530)
32 4b8j_A Importin subunit alpha- 99.5 1.9E-12 6.6E-17 167.7 29.3 400 80-615 75-495 (528)
33 4hat_C Exportin-1; heat repeat 99.5 1.1E-10 3.9E-15 160.1 47.2 404 7-497 152-621 (1023)
34 2qk2_A LP04448P; mini spindles 99.5 4.2E-13 1.4E-17 155.3 19.4 181 254-497 25-208 (242)
35 3ibv_A Exportin-T; karyopherin 99.5 4.5E-09 1.5E-13 144.3 60.4 462 51-672 56-573 (980)
36 1w63_A Adapter-related protein 99.5 4.7E-12 1.6E-16 166.6 29.1 368 1223-1736 77-469 (618)
37 2z6h_A Catenin beta-1, beta-ca 99.4 4.8E-11 1.6E-15 158.4 36.2 484 1033-1576 13-533 (644)
38 3now_A UNC-45 protein, SD10334 99.4 1.8E-09 6E-14 142.6 48.9 510 1047-1647 217-784 (810)
39 4hat_C Exportin-1; heat repeat 99.4 1.9E-08 6.5E-13 138.2 60.8 491 4-668 61-621 (1023)
40 1jdh_A Beta-catenin; beta-cate 99.4 4.3E-11 1.5E-15 154.7 33.1 476 1033-1568 16-528 (529)
41 3now_A UNC-45 protein, SD10334 99.4 2E-10 6.8E-15 151.5 39.4 499 832-1378 219-782 (810)
42 2z6h_A Catenin beta-1, beta-ca 99.4 4E-11 1.4E-15 159.1 32.4 452 1005-1526 19-529 (644)
43 1jdh_A Beta-catenin; beta-cate 99.4 6.6E-11 2.3E-15 152.9 30.1 447 1003-1522 20-528 (529)
44 2qk2_A LP04448P; mini spindles 99.4 1.5E-11 5.2E-16 142.1 20.9 202 162-469 18-222 (242)
45 2vgl_A Adaptor protein complex 99.3 1.2E-09 4E-14 143.4 38.0 432 1002-1522 113-587 (621)
46 2qk1_A Protein STU2; STU2P, XM 99.3 7.6E-11 2.6E-15 136.5 20.3 196 3-201 27-234 (249)
47 2qk1_A Protein STU2; STU2P, XM 99.3 6.7E-11 2.3E-15 136.9 17.8 187 255-497 27-223 (249)
48 3ul1_B Importin subunit alpha- 99.2 3.1E-09 1E-13 136.7 29.6 387 1085-1567 57-475 (510)
49 3tpo_A Importin subunit alpha- 99.2 4.3E-09 1.5E-13 136.1 31.0 400 80-612 77-493 (529)
50 3ul1_B Importin subunit alpha- 99.2 3.4E-09 1.2E-13 136.3 28.9 388 3-492 68-476 (510)
51 3tpo_A Importin subunit alpha- 99.2 6.2E-09 2.1E-13 134.6 31.5 388 3-492 87-495 (529)
52 1oyz_A Hypothetical protein YI 99.1 2.6E-09 8.9E-14 126.1 22.8 240 1034-1362 23-264 (280)
53 1oyz_A Hypothetical protein YI 99.1 3.7E-09 1.3E-13 124.8 23.1 251 1177-1521 24-279 (280)
54 3gjx_A Exportin-1; transport, 99.0 3.2E-06 1.1E-10 115.6 50.0 404 8-496 165-646 (1073)
55 2iw3_A Elongation factor 3A; a 99.0 2.6E-08 8.8E-13 133.1 27.7 268 37-378 54-327 (986)
56 2vgl_A Adaptor protein complex 99.0 2.8E-07 9.7E-12 120.8 37.2 469 1009-1570 83-589 (621)
57 3gjx_A Exportin-1; transport, 99.0 4.9E-05 1.7E-09 104.0 58.9 499 4-666 73-645 (1073)
58 3ltm_A Alpha-REP4; protein eng 98.9 4.4E-08 1.5E-12 110.3 19.0 188 1315-1573 18-206 (211)
59 3ltm_A Alpha-REP4; protein eng 98.8 6.5E-08 2.2E-12 108.8 19.0 184 1259-1525 20-204 (211)
60 3ltj_A Alpharep-4; protein eng 98.8 8E-08 2.7E-12 107.2 19.4 184 1258-1524 14-198 (201)
61 3opb_A SWI5-dependent HO expre 98.8 1.4E-05 4.7E-10 103.8 41.8 536 851-1526 128-730 (778)
62 3ltj_A Alpharep-4; protein eng 98.8 1.4E-07 4.7E-12 105.3 19.1 185 1313-1568 11-196 (201)
63 4hxt_A De novo protein OR329; 98.8 2.1E-07 7.2E-12 107.1 20.0 237 80-380 3-246 (252)
64 3a6p_A Exportin-5; exportin-5, 98.7 2.9E-06 1E-10 119.5 34.4 328 79-475 249-635 (1204)
65 4ady_A RPN2, 26S proteasome re 98.7 0.00095 3.3E-08 88.5 54.7 295 1146-1523 406-718 (963)
66 4hxt_A De novo protein OR329; 98.7 1.7E-07 5.8E-12 107.9 16.8 231 39-315 4-242 (252)
67 4db8_A Armadillo-repeat protei 98.6 2.2E-07 7.7E-12 107.3 15.5 230 80-374 13-250 (252)
68 3a6p_A Exportin-5; exportin-5, 98.6 4.8E-05 1.6E-09 107.2 41.9 159 1050-1226 502-681 (1204)
69 4ady_A RPN2, 26S proteasome re 98.6 6.7E-06 2.3E-10 108.6 30.8 305 1151-1543 374-698 (963)
70 4db8_A Armadillo-repeat protei 98.6 1.1E-07 3.8E-12 109.9 12.0 229 39-313 14-250 (252)
71 2iw3_A Elongation factor 3A; a 98.6 1.5E-06 5.1E-11 116.3 22.8 308 79-498 14-328 (986)
72 1xm9_A Plakophilin 1; armadill 98.5 1.7E-05 6E-10 100.1 26.9 358 39-493 4-448 (457)
73 2db0_A 253AA long hypothetical 98.4 7.8E-06 2.7E-10 85.0 18.0 206 1214-1459 30-246 (253)
74 4ffb_C Protein STU2; tubulin f 98.4 6.6E-06 2.3E-10 96.8 20.1 188 254-497 19-215 (278)
75 1xm9_A Plakophilin 1; armadill 98.3 9.5E-05 3.2E-09 93.4 29.9 341 1178-1572 4-451 (457)
76 4db6_A Armadillo repeat protei 98.3 3.5E-06 1.2E-10 94.3 14.8 180 1315-1524 11-209 (210)
77 2db0_A 253AA long hypothetical 98.3 4.1E-05 1.4E-09 79.7 20.6 216 34-313 29-245 (253)
78 3l6x_A Catenin delta-1; cateni 98.3 0.00017 5.7E-09 92.4 31.2 368 38-494 49-476 (584)
79 2of3_A ZYG-9; multifunctional 98.3 1.2E-05 4.3E-10 92.0 18.2 178 257-497 59-239 (266)
80 3l6x_A Catenin delta-1; cateni 98.3 5.6E-05 1.9E-09 96.8 26.2 350 1173-1570 45-476 (584)
81 3opb_A SWI5-dependent HO expre 98.3 0.0026 8.9E-08 82.7 40.4 529 1146-1772 181-761 (778)
82 3nmz_A APC variant protein; pr 98.2 7.2E-05 2.5E-09 93.5 24.5 255 1019-1291 167-454 (458)
83 3nmz_A APC variant protein; pr 98.2 9.5E-05 3.2E-09 92.5 24.7 294 1147-1464 94-455 (458)
84 1vsy_5 Proteasome activator BL 98.1 0.013 4.3E-07 79.9 45.3 122 64-187 117-244 (997)
85 4db6_A Armadillo repeat protei 98.1 1.3E-05 4.4E-10 89.7 13.5 180 3-187 23-208 (210)
86 1xqr_A HSPBP1 protein; armadil 98.0 0.00015 5.2E-09 85.5 19.4 178 52-276 54-241 (296)
87 4ffb_C Protein STU2; tubulin f 97.9 8.1E-05 2.8E-09 87.4 15.9 200 1036-1289 12-214 (278)
88 1xqr_A HSPBP1 protein; armadil 97.9 0.00012 4.2E-09 86.3 16.0 180 1148-1346 53-239 (296)
89 2of3_A ZYG-9; multifunctional 97.8 0.00038 1.3E-08 79.7 18.3 189 1034-1289 46-238 (266)
90 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00033 1.1E-08 84.9 17.3 228 1134-1458 175-403 (800)
91 3tjz_B Coatomer subunit gamma; 97.8 0.00069 2.4E-08 81.3 19.8 305 258-703 42-349 (355)
92 3nmw_A APC variant protein; AR 97.7 0.00027 9.4E-09 85.6 16.0 233 38-315 74-335 (354)
93 1vsy_5 Proteasome activator BL 97.7 0.017 6E-07 78.6 33.3 373 1214-1650 506-971 (997)
94 3nmw_A APC variant protein; AR 97.6 0.00089 3E-08 81.1 18.4 228 92-379 97-338 (354)
95 3b2a_A TON_1937, putative unch 97.6 0.0036 1.2E-07 68.6 19.5 179 1136-1345 36-218 (265)
96 3b2a_A TON_1937, putative unch 97.5 0.00078 2.7E-08 73.7 13.9 182 1086-1287 34-218 (265)
97 3tjz_B Coatomer subunit gamma; 97.5 0.0031 1.1E-07 75.6 19.5 271 1248-1597 58-335 (355)
98 1te4_A Conserved protein MTH18 97.4 3.4E-05 1.2E-09 79.5 1.0 119 1314-1455 10-129 (131)
99 1te4_A Conserved protein MTH18 97.3 8.4E-05 2.9E-09 76.6 3.5 117 1398-1567 14-130 (131)
100 3l9t_A Putative uncharacterize 97.1 0.0038 1.3E-07 69.3 13.5 181 1343-1576 30-213 (240)
101 4gmo_A Putative uncharacterize 96.9 0.15 5.2E-06 67.3 29.4 144 3-151 45-218 (684)
102 1lrv_A LRV, leucine-rich repea 96.9 0.00017 5.7E-09 82.3 0.5 64 86-181 57-120 (244)
103 3grl_A General vesicular trans 96.8 0.11 3.8E-06 66.0 24.6 156 1174-1347 19-197 (651)
104 3u0r_A Apoptosis inhibitor 5; 96.6 0.12 4.3E-06 62.7 22.0 125 51-191 41-166 (507)
105 3oc3_A Helicase MOT1, MOT1; re 96.5 0.0054 1.9E-07 74.6 9.4 174 7-211 243-417 (800)
106 3l9t_A Putative uncharacterize 96.5 0.069 2.4E-06 59.3 17.3 94 1408-1527 116-210 (240)
107 3grl_A General vesicular trans 96.0 0.39 1.3E-05 61.1 22.7 299 7-375 37-394 (651)
108 1lrv_A LRV, leucine-rich repea 95.9 0.0016 5.5E-08 74.2 0.9 15 355-369 226-240 (244)
109 4gmo_A Putative uncharacterize 95.7 0.077 2.6E-06 70.2 15.7 89 79-168 35-128 (684)
110 3tt9_A Plakophilin-2; cell adh 95.1 0.26 8.8E-06 55.6 15.2 174 1260-1457 10-227 (233)
111 1vsy_4 Proteasome activator BL 95.1 1.8 6.1E-05 57.5 25.3 113 79-191 339-458 (799)
112 3tt9_A Plakophilin-2; cell adh 94.2 0.17 6E-06 56.9 10.7 151 1398-1571 10-181 (233)
113 4atg_A TAF6; transcription, TF 93.3 1.7 6E-05 47.0 16.1 80 1124-1203 78-162 (196)
114 3gs3_A Symplekin, LD45768P; he 92.8 16 0.00054 41.5 27.1 208 94-378 30-246 (257)
115 3u0r_A Apoptosis inhibitor 5; 89.5 46 0.0016 40.7 27.3 90 1047-1165 41-130 (507)
116 4atg_A TAF6; transcription, TF 87.8 3.9 0.00013 44.3 12.3 121 76-209 12-140 (196)
117 1lsh_A Lipovitellin (LV-1N, LV 86.3 44 0.0015 46.1 24.9 208 1175-1460 355-577 (1056)
118 3o2t_A Symplekin; heat repeat, 84.5 76 0.0026 38.0 25.0 219 96-395 42-272 (386)
119 1lsh_A Lipovitellin (LV-1N, LV 83.2 19 0.00064 49.8 19.0 47 1410-1456 492-540 (1056)
120 3tj1_A RNA polymerase I-specif 81.9 1.2E+02 0.0041 38.8 23.7 93 57-152 113-208 (649)
121 1w9c_A CRM1 protein, exportin 81.9 21 0.00073 41.6 15.7 148 299-497 43-199 (321)
122 1upk_A MO25 protein; transfera 80.2 34 0.0012 39.9 16.5 206 284-615 77-282 (341)
123 1w9c_A CRM1 protein, exportin 79.8 37 0.0013 39.6 16.8 161 7-171 41-227 (321)
124 1vsy_4 Proteasome activator BL 78.2 60 0.0021 43.0 20.3 287 586-940 338-659 (799)
125 3o2t_A Symplekin; heat repeat, 75.7 1.4E+02 0.0049 35.7 23.6 91 1049-1166 40-131 (386)
126 2npp_B PP2A, B subunit, serine 64.8 1.7E+02 0.0059 35.7 18.4 197 3-209 173-374 (449)
127 3fga_B Serine/threonine-protei 56.6 3.2E+02 0.011 32.8 20.9 228 5-283 142-376 (403)
128 3fga_B Serine/threonine-protei 56.0 3.3E+02 0.011 32.7 19.1 144 1235-1378 190-366 (403)
129 3gs3_A Symplekin, LD45768P; he 55.7 2.6E+02 0.009 31.4 19.8 146 35-187 14-172 (257)
130 1x5b_A Signal transducing adap 41.7 1E+02 0.0035 32.3 9.8 94 49-150 30-128 (163)
131 1oks_A RNA polymerase alpha su 41.5 12 0.00041 30.5 1.9 44 1724-1768 3-46 (56)
132 1ho8_A Vacuolar ATP synthase s 40.0 2.6E+02 0.0088 34.4 14.2 174 3-188 283-476 (480)
133 1juq_A ADP-ribosylation factor 39.2 2.2E+02 0.0075 29.9 12.0 79 1085-1168 50-132 (171)
134 3ldz_A STAM-1, signal transduc 38.9 1.7E+02 0.0059 29.6 10.8 78 79-193 42-119 (140)
135 1x5b_A Signal transducing adap 38.7 3.5E+02 0.012 28.1 13.3 77 116-193 51-130 (163)
136 3ldz_A STAM-1, signal transduc 38.4 72 0.0025 32.5 7.8 90 1035-1138 43-132 (140)
137 1vdy_A Hypothetical protein (R 37.7 48 0.0016 33.8 6.2 39 343-381 46-84 (140)
138 2jak_A Serine/threonine-protei 37.5 1.6E+02 0.0054 35.3 11.6 174 4-183 186-362 (392)
139 1ho8_A Vacuolar ATP synthase s 36.7 32 0.0011 42.2 5.6 73 37-109 395-477 (480)
140 3s4w_B Protein FACD2, fanconi 34.2 1.1E+03 0.039 32.6 20.9 71 863-936 407-477 (1323)
141 3g2s_A C-terminal fragment of 33.3 3.5E+02 0.012 27.7 12.0 75 118-193 49-131 (149)
142 1mhq_A ADP-ribosylation factor 32.7 4.1E+02 0.014 27.0 13.1 75 118-193 39-121 (148)
143 3g2s_A C-terminal fragment of 29.7 3.9E+02 0.013 27.3 11.7 74 78-151 47-130 (149)
144 3dad_A FH1/FH2 domain-containi 29.6 3.6E+02 0.012 31.5 12.5 109 40-150 163-289 (339)
145 3zyq_A Hepatocyte growth facto 29.1 4.8E+02 0.017 28.5 13.3 94 49-150 23-121 (226)
146 1juq_A ADP-ribosylation factor 28.6 3.1E+02 0.011 28.7 11.0 95 49-151 28-132 (171)
147 1mhq_A ADP-ribosylation factor 25.7 3.2E+02 0.011 27.9 10.2 95 49-151 16-120 (148)
148 1vdy_A Hypothetical protein (R 25.6 2.1E+02 0.0072 29.0 8.5 55 141-195 31-85 (140)
149 1elk_A Target of MYB1; superhe 24.8 5.5E+02 0.019 26.3 12.0 78 115-192 51-134 (157)
150 2npp_B PP2A, B subunit, serine 24.0 1E+03 0.035 28.8 19.8 247 867-1165 128-400 (449)
151 1elk_A Target of MYB1; superhe 23.5 3.2E+02 0.011 28.2 9.8 75 855-929 53-133 (157)
152 1sz9_A PCF11 protein; RNA poly 22.3 6.2E+02 0.021 25.6 11.6 94 116-210 42-136 (144)
153 3ebb_A Phospholipase A2-activa 22.1 4.4E+02 0.015 30.4 11.6 110 38-147 148-263 (304)
154 4flb_A Regulation of nuclear P 21.0 5.4E+02 0.019 25.3 10.8 103 78-189 7-113 (132)
155 2b6c_A Hypothetical protein EF 20.4 2E+02 0.007 31.4 8.0 84 1413-1526 107-190 (220)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=8.8e-103 Score=1116.39 Aligned_cols=1117 Identities=47% Similarity=0.715 Sum_probs=861.3
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCC--hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVI 80 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~--~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~i 80 (1827)
++++++|..++.+|++++..++... +.......+.++|.|++++.+.+++.+|.+|+.+|+++++.+|+.+.+|.+.+
T Consensus 97 d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~l 176 (1230)
T 1u6g_C 97 SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSI 176 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567899999999999999998752 12344578999999999997545899999999999999999999998999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERV 160 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i 160 (1827)
++.+++.|.++++.||++|+.|++.++..+++..+..+++.+++.|.+..+..+|+.++++++.+++..|+.|.||++.+
T Consensus 177 l~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l 256 (1230)
T 1u6g_C 177 LTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKI 256 (1230)
T ss_dssp HHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888889998886544456889999999999999999999999999
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCC
Q psy14676 161 MPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240 (1827)
Q Consensus 161 ~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~ 240 (1827)
+|.+++.++++++++|+.++++++.|++.||+++.||++.++|.+++.+++||+|.+++++++. +.+++.+++
T Consensus 257 ~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~------~~~~~~~~~- 329 (1230)
T 1u6g_C 257 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE------NAMDADGGD- 329 (1230)
T ss_dssp HHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccc------ccccccccc-
Confidence 9999999999999999999999999999999999999999999999999999998444222210 001110000
Q ss_pred CCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccC
Q psy14676 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS 320 (1827)
Q Consensus 241 dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~ 320 (1827)
+++++.+++|++++|.+|+||++|+.+++.++.+.|+.+.++++.++|.++.++++++++||.+++.+++.+++..+...
T Consensus 330 ~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 409 (1230)
T 1u6g_C 330 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQ 409 (1230)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-
T ss_pred cchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccc
Confidence 11122234677778899999999999999999988888899999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhh
Q psy14676 321 PLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDE 400 (1827)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~ 400 (1827)
.|..+ +..+...+++...+...+|.+++.+.+.|+|+++++|++++.+++.+....++.+.+|++.++|.+...+++.
T Consensus 410 ~~~~~-~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~- 487 (1230)
T 1u6g_C 410 SWLCD-PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK- 487 (1230)
T ss_dssp ------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS-
T ss_pred ccccC-ccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCC-
Confidence 22110 1111222367788999999999999999999999999999999999999999888999999999999998421
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhh
Q psy14676 401 EEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREE 479 (1827)
Q Consensus 401 ~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~ 479 (1827)
. ....+|..++.++..+++.++ +.|.||++.++|.++.+++|+.+
T Consensus 488 ---------------------------------~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~ 533 (1230)
T 1u6g_C 488 ---------------------------------S-SSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFY 533 (1230)
T ss_dssp ---------------------------------S-SCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSH
T ss_pred ---------------------------------C-CcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccch
Confidence 0 023689999999999998887 66889988888888777777666
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCc
Q psy14676 480 NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDK 559 (1827)
Q Consensus 480 ~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dp 559 (1827)
+||..|+.++.++++.+|...
T Consensus 534 ~v~~~al~~l~~l~~~~~~~~----------------------------------------------------------- 554 (1230)
T 1u6g_C 534 KITSEALLVTQQLVKVIRPLD----------------------------------------------------------- 554 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCcc-----------------------------------------------------------
Confidence 666555554444443322000
Q ss_pred cccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhh
Q psy14676 560 DFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIP 639 (1827)
Q Consensus 560 d~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~ 639 (1827)
T Consensus 555 -------------------------------------------------------------------------------- 554 (1230)
T 1u6g_C 555 -------------------------------------------------------------------------------- 554 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhh
Q psy14676 640 ILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 719 (1827)
Q Consensus 640 ~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~ 719 (1827)
T Consensus 555 -------------------------------------------------------------------------------- 554 (1230)
T 1u6g_C 555 -------------------------------------------------------------------------------- 554 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhh
Q psy14676 720 SILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREA 799 (1827)
Q Consensus 720 ~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~ 799 (1827)
T Consensus 555 -------------------------------------------------------------------------------- 554 (1230)
T 1u6g_C 555 -------------------------------------------------------------------------------- 554 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHH
Q psy14676 800 LPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQC 879 (1827)
Q Consensus 800 ~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~ 879 (1827)
T Consensus 555 -------------------------------------------------------------------------------- 554 (1230)
T 1u6g_C 555 -------------------------------------------------------------------------------- 554 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccccchhhhhhhHHHHHHhh--cccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHh
Q psy14676 880 FAAICRQAGHRFAEHIERVMPLILKYS--REEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILN 957 (1827)
Q Consensus 880 l~~L~~~~~~~~~~yl~~ilP~ll~~l--~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~ 957 (1827)
...+..+.||++.++|.++..+ .|.+.++|+.|+++++.++..++..+.+|++.+
T Consensus 555 -----~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~------------------ 611 (1230)
T 1u6g_C 555 -----QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNT------------------ 611 (1230)
T ss_dssp -----SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHH------------------
T ss_pred -----cccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHH------------------
Confidence 0002345566777777777777 566788999999999998877776665554422
Q ss_pred hcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchH
Q psy14676 958 AFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLP 1037 (1827)
Q Consensus 958 ~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP 1037 (1827)
++.|.
T Consensus 612 --------------------------------------------l~~L~------------------------------- 616 (1230)
T 1u6g_C 612 --------------------------------------------LQIFL------------------------------- 616 (1230)
T ss_dssp --------------------------------------------HHHHH-------------------------------
T ss_pred --------------------------------------------HHHHH-------------------------------
Confidence 22221
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHhc-cccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHh
Q psy14676 1038 RLQESLKSNSALMRTTHQSNQTFNVIIQ-RNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVI 1116 (1827)
Q Consensus 1038 ~L~~~L~s~~~~~R~~a~~~L~~l~~~~-~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l 1116 (1827)
+.+++ ...|..++.+++.++... +..+.++ ++.++|.+...+.|+...+|..++.+++.+++..
T Consensus 617 ---~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~----------~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 617 ---ERLKN--EITRLTTVKALTLIAGSPLKIDLRPV----------LGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp ---HHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHH----------HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred ---HHhcc--chhHHHHHHHHHHHHhCccccchHHH----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 11111 124556666666444321 2233444 9999999999999999999999999999999874
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHH
Q psy14676 1117 RPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVK 1196 (1827)
Q Consensus 1117 ~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~ 1196 (1827)
.. ....+++.+++..++..+. +.|.+++..++.+++.++...+..+.++.+.++|.++..++....+-.+.+
T Consensus 682 ~~------~~~~~~v~~~l~~ll~ll~--~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 753 (1230)
T 1u6g_C 682 SD------SLTAAMIDAVLDELPPLIS--ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALS 753 (1230)
T ss_dssp CT------TCCHHHHHHHHTTCGGGSC--TTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHH
T ss_pred cc------cCCHHHHHHHHHHHHhhcC--cchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHH
Confidence 31 1122445555444333333 778899999999999999888877777888999999888765442222223
Q ss_pred ----HHHHHhcCCCccccchhhhhhHhhhhhhhc--c---hhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc
Q psy14676 1197 ----ALTKIAASPLRIDLRPILTDGIPILGSFLR--K---NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV 1267 (1827)
Q Consensus 1197 ----al~~ia~~~~~~dl~p~~~~~l~~L~~~Lr--k---~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll 1267 (1827)
.+..++..... ...+.++++.+...+. + .++..+..+..+++.++...+.... .++..+...+
T Consensus 754 ~l~~~~~~l~~~~~~---~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~~~~~ 825 (1230)
T 1u6g_C 754 AMLDFFQALVVTGTN---NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-----AVVGQFIQDV 825 (1230)
T ss_dssp HHHHHHHHHHTTCCT---TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-----HHHTTTTTTT
T ss_pred HHHHHHHHHHhcCCC---CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-----HHHHHHHHHh
Confidence 33334332110 1122333333332211 1 2355678889999998887655432 3455555555
Q ss_pred CC--CChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh
Q psy14676 1268 SE--SDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV 1345 (1827)
Q Consensus 1268 ~d--~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~ 1345 (1827)
.+ .+...+..++. ++|++|++.++...+++++.++.+|.+++++||.+|+.+||.++.
T Consensus 826 ~~~~~~~~~~~~~l~--------------------~l~~~g~~~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~ 885 (1230)
T 1u6g_C 826 KNSRSTDSIRLLALL--------------------SLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISV 885 (1230)
T ss_dssp TTTTCCHHHHHHHHH--------------------HHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH--------------------HHHHhcccCCCcccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc
Confidence 43 23333333332 335666655555457799999999999999999999999999999
Q ss_pred hhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhc
Q psy14676 1346 GNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL 1425 (1827)
Q Consensus 1346 ~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~ 1425 (1827)
++++.|+|.|++.+.++++.|+..+++|+|++.+. +...+.||.++||+.|++++++.++++|+.+|+|||+|+.
T Consensus 886 ~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~-----~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~ 960 (1230)
T 1u6g_C 886 GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA-----SVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 960 (1230)
T ss_dssp HTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSS-----CSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcC-----ChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhc
Confidence 99999999999999887888999999999999742 2567899999999999999988889999999999999999
Q ss_pred cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc
Q psy14676 1426 IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE 1505 (1827)
Q Consensus 1426 ~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~ 1505 (1827)
.+|+.++|.|.+.++++++.+|.+++.++++++.+.+..+++.+ ..+++.|+++++
T Consensus 961 ~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l------------------------~~~~~~ll~~l~ 1016 (1230)
T 1u6g_C 961 IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL------------------------KNCIGDFLKTLE 1016 (1230)
T ss_dssp SSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH------------------------HHHSTTTHHHHS
T ss_pred cChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHH------------------------HHHHHHHHHhcC
Confidence 99999999999999999999999999999999988766655544 356688888999
Q ss_pred CCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhh
Q psy14676 1506 DKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTH 1585 (1827)
Q Consensus 1506 D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~ 1585 (1827)
|+++ +||+.|+.+|++++|++|+++ +
T Consensus 1017 d~~~----------------------------------------------~vr~~a~~~l~~~~~~~~~~~--------~ 1042 (1230)
T 1u6g_C 1017 DPDL----------------------------------------------NVRRVALVTFNSAAHNKPSLI--------R 1042 (1230)
T ss_dssp SSST----------------------------------------------HHHHHHHHHHHHHHHHCGGGT--------G
T ss_pred CCcH----------------------------------------------HHHHHHHHHHHHHHhcChHhH--------H
Confidence 9888 999999999999999999999 9
Q ss_pred hhcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCChHHHHHHHHhhcc
Q psy14676 1586 TLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLR 1665 (1827)
Q Consensus 1586 ~~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~~~~~~~~~~~gl~ 1665 (1827)
++++.++|.|| ++|.+|+||||+|+||||||+||||+++||+||||||+||++|.+++|+.+|+++++.||+
T Consensus 1043 ~~l~~~lp~l~--------~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~ 1114 (1230)
T 1u6g_C 1043 DLLDTVLPHLY--------NETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLK 1114 (1230)
T ss_dssp GGHHHHHHHHH--------HTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHH--------HHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCCChh
Q psy14676 1666 DHYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQDADKNPA 1745 (1827)
Q Consensus 1666 d~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~~~l~~~~~~~~~~~ 1745 (1827)
|++|||++||+||.||+..+|.++++++|++++|++++|++|+|+||||||+||++|++|||||++.+|.++|++++||+
T Consensus 1115 d~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~~~~~~~ 1194 (1230)
T 1u6g_C 1115 DHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPL 1194 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSSSS
T ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCCCcccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCchHHHHHHHHhcccCCCCCCCCccccCC
Q psy14676 1746 LNDFVATIKNSPELQTIFDSMQKDSSLSNQQDPHMMDMN 1784 (1827)
Q Consensus 1746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1784 (1827)
|.+|+++|++||+|+.+|++|++|..+++ .++||.+
T Consensus 1195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 1230 (1230)
T 1u6g_C 1195 MSEFQSQISSNPELAAIFESIQKDSSSTN---LESMDTS 1230 (1230)
T ss_dssp CCCCCHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhhcCC---ccccccC
Confidence 99999999999999999999999986633 4588864
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.2e-56 Score=640.57 Aligned_cols=1141 Identities=27% Similarity=0.400 Sum_probs=812.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT 116 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~ 116 (1827)
-++.|++.+.+ +|+++|..|..-|...+..-...+.+ ....+++.+++.|.++++.||..|+.+|+.++..+++..+.
T Consensus 7 ~l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 7 HISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35677777765 58999999988887765443223333 35589999999999999999999999999999999888888
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchh------hHHhHHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHh
Q psy14676 117 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR------FAEHIERVMPLILKYSRE-EDDELREFCLQACEAFVQR 189 (1827)
Q Consensus 117 ~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~------~~p~l~~i~p~l~~~~~~-~~delRe~al~ale~~~~~ 189 (1827)
.+++.++..|.++ +..+|..++.+++.++...+.. ..+|++.++|.+++.+++ ++.++|+.|+.++..++..
T Consensus 86 ~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 8888898888654 4578999999999999988764 567899999999999984 7789999999999999999
Q ss_pred CCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHH
Q psy14676 190 CPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLE 269 (1827)
Q Consensus 190 ~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~ 269 (1827)
+|+.+.||++.+++.++..+.. .++.||+.|++||+
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~--------------------------------------------~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTS--------------------------------------------PRLAVRKRTIIALG 200 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGC--------------------------------------------SSHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcC--------------------------------------------CcHHHHHHHHHHHH
Confidence 9999999999999999887631 01479999999999
Q ss_pred HHHHHcCCchhhhHHhhhHHHHhhcCCC-CHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHH
Q psy14676 270 AIIATRRDLIGDMYRLVSPPLIARFKER-EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLV 348 (1827)
Q Consensus 270 ~l~~~~~~~l~~~~~~v~p~L~~~l~e~-ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv 348 (1827)
.++...++. +++.++|.++..+.+. ++.+|..++.+++.+++..+ ..+.++++.++
T Consensus 201 ~l~~~~~~~---~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~--------------------~~~~~~l~~l~ 257 (1230)
T 1u6g_C 201 HLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG--------------------HRIGEYLEKII 257 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS--------------------GGGTTSCTTHH
T ss_pred HHHHhcCHH---HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH--------------------HHHHHHHHHHH
Confidence 999877643 3566677777766433 35789999999999986532 23566788999
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCccc-CCCCCCCCC
Q psy14676 349 KALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEE-DGEDEGEDD 427 (1827)
Q Consensus 349 ~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~e-d~~~~~~~~ 427 (1827)
|.+++.+.|+++.||..++..++.++...|..+.+|++.++|.+.+.+..++++... .+.+...+.++. +++|+++++
T Consensus 258 ~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~-~d~~~~~~~~~~~~~~~~~~~~ 336 (1230)
T 1u6g_C 258 PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD-DEDEDENAMDADGGDDDDQGSD 336 (1230)
T ss_dssp HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCc-ccccccccccccccccchhhcc
Confidence 999999999999999999999999999999988999999999999888655544111 000000000000 111111223
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCC
Q psy14676 428 NEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDP 507 (1827)
Q Consensus 428 ~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~ 507 (1827)
++|.+++|..|++|.+|+.++..++.+.|+.|.+|++.++|.+...++|++++||.+++.++..+++..|...+.
T Consensus 337 ~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----- 411 (1230)
T 1u6g_C 337 DEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW----- 411 (1230)
T ss_dssp --------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--------
T ss_pred cccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccc-----
Confidence 467777888999999999999999998888899999999999988888888888888888777766554410000
Q ss_pred cccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHH
Q psy14676 508 NQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERK 587 (1827)
Q Consensus 508 ~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~ 587 (1827)
.
T Consensus 412 ----------~--------------------------------------------------------------------- 412 (1230)
T 1u6g_C 412 ----------L--------------------------------------------------------------------- 412 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------c---------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhC
Q psy14676 588 VVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNY 667 (1827)
Q Consensus 588 i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~ 667 (1827)
.. . .
T Consensus 413 ---------~~---------------------~-----~----------------------------------------- 416 (1230)
T 1u6g_C 413 ---------CD---------------------P-----D----------------------------------------- 416 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------cC---------------------c-----c-----------------------------------------
Confidence 00 0 0
Q ss_pred CCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHH
Q psy14676 668 PSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFK 747 (1827)
Q Consensus 668 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~ 747 (1827)
.|. .
T Consensus 417 -------------------------------------------------~~~------------------------~--- 420 (1230)
T 1u6g_C 417 -------------------------------------------------AME------------------------Q--- 420 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------ccc------------------------c---
Confidence 000 0
Q ss_pred HHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhh
Q psy14676 748 SLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSH 827 (1827)
Q Consensus 748 ~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~ 827 (1827)
.+
T Consensus 421 --------~~---------------------------------------------------------------------- 422 (1230)
T 1u6g_C 421 --------GE---------------------------------------------------------------------- 422 (1230)
T ss_dssp --------CC----------------------------------------------------------------------
T ss_pred --------cc----------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhc
Q psy14676 828 LVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSR 907 (1827)
Q Consensus 828 ~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~ 907 (1827)
.+...+.+|++.++|.+++.+.
T Consensus 423 ----------------------------------------------------------~~~~~~~~~l~~ll~~l~~~l~ 444 (1230)
T 1u6g_C 423 ----------------------------------------------------------TPLTMLQSQVPNIVKALHKQMK 444 (1230)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTTHHHHHHHHHTT
T ss_pred ----------------------------------------------------------chHHHHHHHhhHHHHHHHHHhc
Confidence 0001123457778888888888
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccc
Q psy14676 908 EEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTS 987 (1827)
Q Consensus 908 d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~ 987 (1827)
+++..+|..++.+++.++..++..+.+|++.
T Consensus 445 ~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~------------------------------------------------- 475 (1230)
T 1u6g_C 445 EKSVKTRQCCFNMLTELVNVLPGALTQHIPV------------------------------------------------- 475 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH-------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHHchhhhHHHHHH-------------------------------------------------
Confidence 8899999999999998887766555555432
Q ss_pred cchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCC--hhhHHHHHHHHHHHHH-h
Q psy14676 988 TSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNS--ALMRTTHQSNQTFNVI-I 1064 (1827)
Q Consensus 988 ~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~--~~~R~~a~~~L~~l~~-~ 1064 (1827)
++|.+.+.+++.+ ...|..++..+..+.. +
T Consensus 476 -----------------------------------------------ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 476 -----------------------------------------------LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp -----------------------------------------------HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred -----------------------------------------------HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 2333344444433 3678888888885544 4
Q ss_pred ccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhh
Q psy14676 1065 QRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKA 1144 (1827)
Q Consensus 1065 ~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~ 1144 (1827)
.+..+.|| ++.++|.++.++.|++++|+.+|+.+++.+++.+++.+......+.||++.+++.++..+..
T Consensus 509 ~~~~~~~~----------l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 578 (1230)
T 1u6g_C 509 SPQVFHPH----------VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578 (1230)
T ss_dssp CGGGGHHH----------HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHhH----------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc
Confidence 45557777 99999999999999999999999999999999987522222357889999999999999976
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhh
Q psy14676 1145 ADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSF 1224 (1827)
Q Consensus 1145 ~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~ 1224 (1827)
.|.+.+||+.|+.++|.++...|+.+.++++.+++.|.+++.++.+|..++++++.++.+..+.++.+|++++++.+...
T Consensus 579 ~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~ 658 (1230)
T 1u6g_C 579 ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASF 658 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998777778899999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccch------hhH
Q psy14676 1225 LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVE------PAA 1298 (1827)
Q Consensus 1225 Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~------~~i 1298 (1827)
++++++.+|.+++.+|+.++.+++..++.+.+..++..+.++++++|.++...++.+|+.+++..|..... +.+
T Consensus 659 l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~ 738 (1230)
T 1u6g_C 659 LRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNEL 738 (1230)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHH
Confidence 99999999999999999999999888877778888888889999999999999999999999876643311 111
Q ss_pred Hhhh-----------------hhcccccC-CCchhhHHHHHHHhcCC-----CCHhHHHHHHHHHhhhhhh---hhhhhH
Q psy14676 1299 ASIL-----------------PQIGRHTD-LTSVADLKQVILNAFTP-----TSEEVKSAASYTLGSIAVG---NLQQYV 1352 (1827)
Q Consensus 1299 ~~~l-----------------geiG~~~~-~~~~~~l~~~~l~~~~~-----~s~eVr~aAa~aLG~i~~~---~l~~~L 1352 (1827)
...+ ..++...+ ....+.+++.+++.... ..+.++..++..+|.+... ....++
T Consensus 739 ~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 818 (1230)
T 1u6g_C 739 IGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVV 818 (1230)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHH
T ss_pred HHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHH
Confidence 1111 11111110 01123344444333222 2345778888888875432 112445
Q ss_pred HHHHHhhhc---CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC
Q psy14676 1353 PFVLKEIEN---QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS 1429 (1827)
Q Consensus 1353 P~Il~~i~~---~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~ 1429 (1827)
+.+++.+++ ....+...+.+++|+..+. .+.++ +++.+.+++.+.+..+++|..|+.|||.++..++.
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~--------~~~~~-~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~ 889 (1230)
T 1u6g_C 819 GQFIQDVKNSRSTDSIRLLALLSLGEVGHHI--------DLSGQ-LELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889 (1230)
T ss_dssp TTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS--------CCCSC-THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHhcccC--------CCccc-ccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHH
Confidence 555555543 2345677778888885421 13332 55678888888888999999999999999988888
Q ss_pred cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCch
Q psy14676 1430 NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNG 1509 (1827)
Q Consensus 1430 ~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~ 1509 (1827)
.++|.+.+.+.+. +..|...++|++..+...+.. .+. .+...+++.++..+.+.+.
T Consensus 890 ~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~---~~~--------------------~~~~~i~~~L~~~~~~~~~ 945 (1230)
T 1u6g_C 890 EYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVV---GLK--------------------PYVENIWALLLKHCECAEE 945 (1230)
T ss_dssp HHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCST---TTH--------------------HHHHHHHHHHTTCCCCSST
T ss_pred HHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChh---hHH--------------------hhHHHHHHHHHHHhcCcch
Confidence 9999999999765 678999999999999753211 111 1335788999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcc
Q psy14676 1510 EVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLT 1589 (1827)
Q Consensus 1510 ~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~ 1589 (1827)
.+|..+++|+|.|++..+.. ++..+...+.+++ ..+|..++.++.....+.|.-+ .++++
T Consensus 946 ~~r~~~a~~lg~l~~~~~~~----l~p~l~~~l~~~~--------~~~R~~~~~~l~~~~~~~~~~~--------~~~l~ 1005 (1230)
T 1u6g_C 946 GTRNVVAECLGKLTLIDPET----LLPRLKGYLISGS--------SYARSSVVTAVKFTISDHPQPI--------DPLLK 1005 (1230)
T ss_dssp THHHHHHHHHHHHHHSSGGG----THHHHTTTSSSSC--------HHHHHHHHHHTGGGCCSSCCTH--------HHHHH
T ss_pred hhHHHHHHHHhhhhccChHH----HHHHHHHHhcCCC--------HHHHHHHHHHHHHHHccCchhh--------HHHHH
Confidence 99999999999999875533 3333333333332 2789999999988887777666 66777
Q ss_pred cCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccC--ChHHHHHHHHhhcc--
Q psy14676 1590 THPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRV--DMFEFLNHLESGLR-- 1665 (1827)
Q Consensus 1590 ~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~--~~~~~~~~~~~gl~-- 1665 (1827)
.++|.++. .+ -|.-.++|.+|..|+.++.....+-+ .+..+++.+...+.
T Consensus 1006 ~~~~~ll~----------~l----------------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~ 1059 (1230)
T 1u6g_C 1006 NCIGDFLK----------TL----------------EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVR 1059 (1230)
T ss_dssp HHSTTTHH----------HH----------------SSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCC
T ss_pred HHHHHHHH----------hc----------------CCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhccc
Confidence 77776661 11 25557899999999999998765543 35677777776653
Q ss_pred ----------------c-hhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q psy14676 1666 ----------------D-HYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAM 1728 (1827)
Q Consensus 1666 ----------------d-~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~ 1728 (1827)
| --++|.-++-++.+|...|+..+ .+..+.+.|-..| +++ +|.+--+.
T Consensus 1060 ~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i--~~~~~~~~~~~gl----~d~---------~di~~~~~ 1124 (1230)
T 1u6g_C 1060 KELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL--DIFEFLNHVEDGL----KDH---------YDIKMLTF 1124 (1230)
T ss_dssp GGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS--CHHHHHHHHHHTT----SSC---------HHHHHHHH
T ss_pred HHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHccc----Cch---------HHHHHHHH
Confidence 2 23899999999999999997766 2666777666665 332 47777788
Q ss_pred HHHHHHhcccCCCCChh---HHHHHHHH-hCC---c----hH---HHHHHHHhcccCCCCCCCCccccCCCCcchhhhhh
Q psy14676 1729 RAVAALLTIQDADKNPA---LNDFVATI-KNS---P----EL---QTIFDSMQKDSSLSNQQDPHMMDMNKNPALNDFVA 1794 (1827)
Q Consensus 1729 r~~~~l~~~~~~~~~~~---~~~~~~~~-~~~---~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1794 (1827)
+.+..|....+....++ +.+-+..+ ..+ . ++ .++..++.+=...-+ ..++.++||.+++|+.
T Consensus 1125 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~----~~~~~~~~~~~~~~~~ 1200 (1230)
T 1u6g_C 1125 LMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALL----TIPEAEKSPLMSEFQS 1200 (1230)
T ss_dssp HHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTT----SSCSCSSSSSCCCCCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHH----hCCCcccChHHHHHHH
Confidence 88888887766644343 33333332 111 1 11 222222222221111 3456678999999999
Q ss_pred hhcCCchhhHHHhhhccCCCCccCCCCCCCCCC
Q psy14676 1795 TIKNSPELQTIFDSMQKDSSLSNQQDPHMMDMS 1827 (1827)
Q Consensus 1795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1827 (1827)
.||++|+++..|+++++|++- ...++||.|
T Consensus 1201 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1230 (1230)
T 1u6g_C 1201 QISSNPELAAIFESIQKDSSS---TNLESMDTS 1230 (1230)
T ss_dssp HHHHHHHHTC-----------------------
T ss_pred HHHhCHHHHHHHHHHHHHhhc---CCccccccC
Confidence 999999999999999999755 344477754
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1e-35 Score=409.71 Aligned_cols=685 Identities=13% Similarity=0.163 Sum_probs=507.0
Q ss_pred CchHHHHHHHHHHHHHHHhhC-CCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCC---CCchhH
Q psy14676 3 SDKEQLRDISSIGLKTVISEL-PLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGAL---LPSFHF 78 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~l-p~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~---l~~~~~ 78 (1827)
++...+|...+.++.++.... |... ...++|.|++.+.++.++.+|..++.+|+.+++.+++. +.++..
T Consensus 106 ~~~~~vr~~~~~~l~~i~~~~~p~~~-------w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 106 SIEPRIANAAAQLIAAIADIELPHGA-------WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHGGGTC-------CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred CCchHHHHHHHHHHHHHHHhhCcccc-------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Confidence 345678888899998887764 4222 67899999999976448899999999999999998876 466788
Q ss_pred HHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhhchhH-----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch
Q psy14676 79 VILTALLPQLSSP--RQAVRKRTIVALSHLVMSCNLQL-----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 79 ~il~~ll~~L~~~--~~~VRk~Ai~aL~~l~~~~~~~~-----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
.+++.+...+.++ ++.||..|+.|++.++..+.... ...+++.+...+ .+.+..+|+.++++++.++...++
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 89999999999999876654321 122344444333 446789999999999999999999
Q ss_pred hhHHhHH-HHHHHHHhhcccCchHHHHHHHHHHHHHHHh-----------------CCCccccchHHHHHHHHHHhccCC
Q psy14676 152 RFAEHIE-RVMPLILKYSREEDDELREFCLQACEAFVQR-----------------CPKEITPHIQSITELCLTYITYDP 213 (1827)
Q Consensus 152 ~~~p~l~-~i~p~l~~~~~~~~delRe~al~ale~~~~~-----------------~p~e~~p~l~~ii~~ll~~l~~dp 213 (1827)
.|.+|+. .+++++...+.+.++++|..|+.++..++.. ++..+.++++.++|.++..+.+..
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999 9999999999988999999998888877765 344456788999999998875410
Q ss_pred CCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhh
Q psy14676 214 NYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 293 (1827)
Q Consensus 214 n~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~ 293 (1827)
+| ++|..|.+|++++.+|+.++...++ .+++.++|.+.+.
T Consensus 338 ---------------------------~d----------~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~ 377 (861)
T 2bpt_A 338 ---------------------------ED----------PEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQN 377 (861)
T ss_dssp ---------------------------CC-----------CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHH
T ss_pred ---------------------------cc----------cccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHH
Confidence 00 0122489999999999999998774 4577889999999
Q ss_pred cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHH
Q psy14676 294 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373 (1827)
Q Consensus 294 l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L 373 (1827)
+.+.+|.+|.+++.+++.+++.. ....+.++++.+++.+.+.++|+++.||.++...++.+
T Consensus 378 l~~~~~~~r~~a~~~l~~i~~~~-------------------~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l 438 (861)
T 2bpt_A 378 ITADNWRNREAAVMAFGSIMDGP-------------------DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI 438 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSS-------------------CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999887321 02456788999999999999999999999998899999
Q ss_pred HHhCcccc--cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q psy14676 374 VQTLPGCL--APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 451 (1827)
Q Consensus 374 ~~vl~~~l--~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l 451 (1827)
+..++..+ .+|++.++|.+...+. +. +++|..|+.++..+
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~l~~~l~-------------------------------------~~-~~v~~~a~~al~~l 480 (861)
T 2bpt_A 439 ADSVAESIDPQQHLPGVVQACLIGLQ-------------------------------------DH-PKVATNCSWTIINL 480 (861)
T ss_dssp HHHHGGGSCTTTTHHHHHHHHHHHHT-------------------------------------SC-HHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhc-------------------------------------cC-hHHHHHHHHHHHHH
Confidence 99887654 6799999999999883 12 78999999999999
Q ss_pred HHHhh----hhhhhhHHhhhhhHHHhhc--chhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhh
Q psy14676 452 IATRR----DLIGDMYRLVSPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVP 525 (1827)
Q Consensus 452 ~~~~~----~~f~~~~~~l~~~L~~~~~--d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 525 (1827)
++..+ ..+.||++.+++.++..+. |.++++|..++.+++.+++..|.. +.
T Consensus 481 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~------------------------~~ 536 (861)
T 2bpt_A 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT------------------------VA 536 (861)
T ss_dssp HHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG------------------------GH
T ss_pred HHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh------------------------hH
Confidence 98875 6788999999999999997 555899999999999999876510 00
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhh----cchh
Q psy14676 526 SLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE----DKNG 601 (1827)
Q Consensus 526 ~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~----D~~~ 601 (1827)
.. ...++|.+.+.+.+. + ... . ..+. +...
T Consensus 537 ~~---------------~~~l~~~l~~~l~~~---------------~-----~~~----~-------~i~~~~~~~~~~ 570 (861)
T 2bpt_A 537 ET---------------SASISTFVMDKLGQT---------------M-----SVD----E-------NQLTLEDAQSLQ 570 (861)
T ss_dssp HH---------------HHHHHHHHHHHHHHH---------------T-----TSC----G-------GGCCHHHHHHHH
T ss_pred HH---------------HHHHHHHHHHHHHHH---------------H-----hhh----c-------ccCChhhHHHHH
Confidence 00 111112111111000 0 000 0 0001 2234
Q ss_pred hHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHH
Q psy14676 602 EVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTV 681 (1827)
Q Consensus 602 eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~ 681 (1827)
++|..+..+++.+++.++. ++.+|+
T Consensus 571 ~~~~~~~~~l~~l~~~~~~--------~~~~~~----------------------------------------------- 595 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPS--------SVEPVA----------------------------------------------- 595 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGG--------GTGGGH-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhh--------hhHHHH-----------------------------------------------
Confidence 5566666666666544442 011111
Q ss_pred HhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHH
Q psy14676 682 ELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSE 761 (1827)
Q Consensus 682 ~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ 761 (1827)
+.++|.+++
T Consensus 596 -------------------------------------~~l~~~l~~---------------------------------- 604 (861)
T 2bpt_A 596 -------------------------------------DMLMGLFFR---------------------------------- 604 (861)
T ss_dssp -------------------------------------HHHHHHHHH----------------------------------
T ss_pred -------------------------------------HHHHHHHHH----------------------------------
Confidence 111111110
Q ss_pred HHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHH
Q psy14676 762 LLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVAL 841 (1827)
Q Consensus 762 ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL 841 (1827)
.
T Consensus 605 -----------------------------------------------~-------------------------------- 605 (861)
T 2bpt_A 605 -----------------------------------------------L-------------------------------- 605 (861)
T ss_dssp -----------------------------------------------H--------------------------------
T ss_pred -----------------------------------------------H--------------------------------
Confidence 0
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhhcCCCCh-hhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHH
Q psy14676 842 SHLVMSCNLQLYTKLIDFLLEGLTTNKST-STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQA 920 (1827)
Q Consensus 842 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~-~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~A 920 (1827)
+. +.++ .+|+.++.+++.++...+..|.+|++.++|.+++.+.+++.++|..++.+
T Consensus 606 ----------------------l~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~ 662 (861)
T 2bpt_A 606 ----------------------LE-KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGF 662 (861)
T ss_dssp ----------------------HH-STTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred ----------------------Hc-cCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 00 0112 56777788888889999999999999999999999988888899999888
Q ss_pred HHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHH
Q psy14676 921 CEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPA 1000 (1827)
Q Consensus 921 le~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ 1000 (1827)
++.++..++..+.||++ .
T Consensus 663 l~~l~~~~~~~~~~~~~--------------------------------------------------------------~ 680 (861)
T 2bpt_A 663 IADISNSLEEDFRRYSD--------------------------------------------------------------A 680 (861)
T ss_dssp HHHHHHHTGGGGHHHHH--------------------------------------------------------------H
T ss_pred HHHHHHHhchhccchHH--------------------------------------------------------------H
Confidence 87766655544444432 2
Q ss_pred HHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCC--hhhHHHHHHHHHHHHHhccccccccccchhh
Q psy14676 1001 IWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNS--ALMRTTHQSNQTFNVIIQRNDIHNHNEETSF 1078 (1827)
Q Consensus 1001 ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~--~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~ 1078 (1827)
+ +|.+.+.+++++ ...|..++.+++.++.+.+..|.||
T Consensus 681 l----------------------------------~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~------ 720 (861)
T 2bpt_A 681 M----------------------------------MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY------ 720 (861)
T ss_dssp H----------------------------------HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH------
T ss_pred H----------------------------------HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHH------
Confidence 2 233334444432 6788889999998888888888888
Q ss_pred hhhhhhhhhHHHHHhhcCCc-----------hhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCC
Q psy14676 1079 IYSFYYFLLSPVIASVGDNF-----------YKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADI 1147 (1827)
Q Consensus 1079 ~~~~l~~Lip~l~~~l~D~~-----------~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~ 1147 (1827)
++.++|.++..+.... ..+|..++.+++.++..+.. ....+.+|+..+++.+...+. |.
T Consensus 721 ----l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~----~~~~~~~~~~~i~~~l~~~~~--d~ 790 (861)
T 2bpt_A 721 ----LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD----KPEALFPYVGTIFQFIAQVAE--DP 790 (861)
T ss_dssp ----HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT----CHHHHGGGHHHHHHHHHHHHH--CH
T ss_pred ----HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHHHc--Cc
Confidence 9999999999887321 46888999999999987642 124578999999998888775 42
Q ss_pred ----CHHHHHHHHHHHHHHHHHh-hhhhhhhhh-hhHHHHHHhhhh--h---hhHHHHHHHHHHHh
Q psy14676 1148 ----DQEVKERAISCMGQIICNL-GDYLKSELP-VCLPILLDRLRN--E---ITRLTTVKALTKIA 1202 (1827)
Q Consensus 1148 ----d~eVre~Ai~alg~l~~~~-g~~l~~~l~-~lL~~Ll~~L~~--e---~tR~~av~al~~ia 1202 (1827)
+.+||+.|+.++|.++..+ |..+.++++ .+++.|++.++. + .+|..|.-|++.+.
T Consensus 791 ~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 791 QLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999 888899999 899999998873 2 23555555555553
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8.5e-36 Score=409.80 Aligned_cols=650 Identities=13% Similarity=0.186 Sum_probs=486.1
Q ss_pred chHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC-----chhH
Q psy14676 4 DKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP-----SFHF 78 (1827)
Q Consensus 4 ~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~-----~~~~ 78 (1827)
....+|..++.++..+...-++.. ...++|.|.+.+.++ ++.+|+.++.+|+.+++.+++.+. .+..
T Consensus 102 ~~~~vr~~~a~~i~~ia~~~~~~~-------wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 102 SSPLIRATVGILITTIASKGELQN-------WPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTT-------CTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccc-------cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 445789999999999988765433 778999999999764 789999999999999999987542 3367
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL---YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~---~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
.+++.+++.|+++++.||..|+.|++.++...++.. +..+++.++..+. ++++.+|+.++++++.+++..++.+.+
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 899999999999999999999999998887655432 3455555555544 467899999999999999999999999
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCP-----KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGG 230 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-----~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~ 230 (1827)
|++.+++++++.+++.++++|..| +++|...|. +.+.||++.++|.+++.|.|. ++|.+|..+
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a---~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~-----e~d~~~~~~---- 320 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEA---CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYS-----DIDIILLKG---- 320 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHH---HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCC-----HHHHHHHHC----
T ss_pred HHHHHHHHHHHHccCCcHHHHHHH---HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCc-----HhHHHHhcC----
Confidence 999999999999998888998655 455555543 236789999999999999873 222222100
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 231 EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 231 ~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
|. ++ |+++||+...|+||++|+++|+.++...|+ .+++.++|.+...+++.+|.+|.+++.+++
T Consensus 321 ---d~------~e----d~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg 384 (852)
T 4fdd_A 321 ---DV------EG----GSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLG 384 (852)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ---Cc------cc----ccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 00 011112226799999999999999998774 467789999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc-cccCchhhHH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG-CLAPSLPALI 389 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~-~l~~~l~~Ll 389 (1827)
.+.+ ++...+.++++.+++.+.+.++|++++||.++...++.++..++. ...+|+..++
T Consensus 385 ~i~~--------------------~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 444 (852)
T 4fdd_A 385 AIAE--------------------GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444 (852)
T ss_dssp HTTT--------------------TTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHH
T ss_pred HHHh--------------------cchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 8873 234566788999999999999999999999888899999987765 4578999999
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhh
Q psy14676 390 PDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPP 469 (1827)
Q Consensus 390 p~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~ 469 (1827)
|.+...+. |.+|++|..|+.++..+++..+..+.||++.+++.
T Consensus 445 ~~L~~~L~-------------------------------------d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~ 487 (852)
T 4fdd_A 445 TELLKRIL-------------------------------------DSNKRVQEAACSAFATLEEEACTELVPYLAYILDT 487 (852)
T ss_dssp HHHHHHHT-------------------------------------CSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred HHHHHHHh-------------------------------------CCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHH
Confidence 99999983 23688999999999999999887788888877776
Q ss_pred HHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHH
Q psy14676 470 LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLAL 549 (1827)
Q Consensus 470 L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~ 549 (1827)
++..++...+.
T Consensus 488 L~~~l~~~~~~--------------------------------------------------------------------- 498 (852)
T 4fdd_A 488 LVFAFSKYQHK--------------------------------------------------------------------- 498 (852)
T ss_dssp HHHHHHHCCHH---------------------------------------------------------------------
T ss_pred HHHHHHHhChH---------------------------------------------------------------------
Confidence 66655422111
Q ss_pred HHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCccccc
Q psy14676 550 LRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRID 629 (1827)
Q Consensus 550 l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~d 629 (1827)
....+..+++.+++..+.. +
T Consensus 499 -----------------------------------------------------~~~~~~~ai~~l~~~~~~~----~--- 518 (852)
T 4fdd_A 499 -----------------------------------------------------NLLILYDAIGTLADSVGHH----L--- 518 (852)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHGGG----G---
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHhhhh----h---
Confidence 0111222233232222210 0
Q ss_pred ccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccC
Q psy14676 630 LRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQ 709 (1827)
Q Consensus 630 l~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~ 709 (1827)
.
T Consensus 519 --------------------------------------~----------------------------------------- 519 (852)
T 4fdd_A 519 --------------------------------------N----------------------------------------- 519 (852)
T ss_dssp --------------------------------------C-----------------------------------------
T ss_pred --------------------------------------c-----------------------------------------
Confidence 0
Q ss_pred CCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHH
Q psy14676 710 PNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVA 789 (1827)
Q Consensus 710 ~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g 789 (1827)
-.+.++.++|.+++ .|
T Consensus 520 ----~~~~~~~l~p~l~~-----------------~~------------------------------------------- 535 (852)
T 4fdd_A 520 ----KPEYIQMLMPPLIQ-----------------KW------------------------------------------- 535 (852)
T ss_dssp ----CHHHHHHHHHHHHH-----------------HH-------------------------------------------
T ss_pred ----cHHHHHHHHHHHHH-----------------HH-------------------------------------------
Confidence 00011222222221 00
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCC
Q psy14676 790 ALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKS 869 (1827)
Q Consensus 790 ~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 869 (1827)
.. + .+.+
T Consensus 536 ------------------~~------------------------------------------------------l-~d~~ 542 (852)
T 4fdd_A 536 ------------------NM------------------------------------------------------L-KDED 542 (852)
T ss_dssp ------------------HH------------------------------------------------------S-CTTC
T ss_pred ------------------Hh------------------------------------------------------c-cccc
Confidence 00 0 0112
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhccc-----------------chHHHHHHHHHHHHHHhhCCCcc
Q psy14676 870 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-----------------DDELREFCLQACEAFVQRCPKEI 932 (1827)
Q Consensus 870 ~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~-----------------~~~vre~al~Ale~~v~~~~~~i 932 (1827)
+..+ .++.+++.++...|..|.||++.++|.+++.+++. +.+++..++.+++.++...+.++
T Consensus 543 ~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~ 621 (852)
T 4fdd_A 543 KDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 621 (852)
T ss_dssp TTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhH
Confidence 2333 67888999999999999999999999888776531 22233333333333332222222
Q ss_pred ccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhcc
Q psy14676 933 TPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQ 1012 (1827)
Q Consensus 933 ~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~ 1012 (1827)
.||+.
T Consensus 622 ~~~~~--------------------------------------------------------------------------- 626 (852)
T 4fdd_A 622 EQLVA--------------------------------------------------------------------------- 626 (852)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHhc---------------------------------------------------------------------------
Confidence 22210
Q ss_pred ccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHH
Q psy14676 1013 EEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092 (1827)
Q Consensus 1013 e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~ 1092 (1827)
.+.++|.+.+.+.++++.+|+.++.+++.++.+.+..+.+| ++.++|.+..
T Consensus 627 -------------------~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~----------l~~~lp~l~~ 677 (852)
T 4fdd_A 627 -------------------RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC----------IADFMPILGT 677 (852)
T ss_dssp -------------------TCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG----------HHHHHHHHHH
T ss_pred -------------------CCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHHHHHH
Confidence 13467777788888888999999999999999999999999 9999999999
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14676 1093 SVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS 1172 (1827)
Q Consensus 1093 ~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~ 1172 (1827)
.+.++.+.++..|++++|.++..+. .++.||+..+++.++..+.+.+....+++.|+.++|.+....++.+.|
T Consensus 678 ~l~~~~~~v~~~a~~alg~i~~~~~-------~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~ 750 (852)
T 4fdd_A 678 NLNPEFISVCNNATWAIGEISIQMG-------IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAP 750 (852)
T ss_dssp TCCTTSHHHHHHHHHHHHHHHHHHG-------GGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HcCccchHHHHHHHHHHHHHHHHhh-------HhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCc
Confidence 9999999999999999999998874 468899999999999999866667899999999999999998888889
Q ss_pred hhhhhHHHHHHhhhh---hhhHHHHHHHHHHHhcC
Q psy14676 1173 ELPVCLPILLDRLRN---EITRLTTVKALTKIAAS 1204 (1827)
Q Consensus 1173 ~l~~lL~~Ll~~L~~---e~tR~~av~al~~ia~~ 1204 (1827)
+++.+++.++..|.+ ...|..|.+++..+...
T Consensus 751 ~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 751 MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV 785 (852)
T ss_dssp GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 999999999999853 33499999999998864
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.2e-34 Score=396.47 Aligned_cols=762 Identities=12% Similarity=0.114 Sum_probs=559.9
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh------------c
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQ-EDVSVQLEALDILSDLLSR------------F 69 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~-~~~~v~~~al~iL~~l~~~------------~ 69 (1827)
+.+.+.|.-+.-.|+.+-..- .....+.|++.+.+. .++.+|.-|.-.|...+.. +
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~~-----------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~ 84 (861)
T 2bpt_A 16 SPDQNIRLTSETQLKKLSNDN-----------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhhC-----------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhH
Confidence 344556666666666654321 123445666666543 4789999998888876532 1
Q ss_pred cCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy14676 70 GALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL-QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 70 ~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~-~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~ 147 (1827)
...+.+ ....+.+.+++.|.++++.||..+..+++.++....+ ..+..+++.+++.+.++.++.+|..++.+++.+++
T Consensus 85 ~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~ 164 (861)
T 2bpt_A 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE 164 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 111333 4557888899999999999999999999999987544 46788899999988764368899999999999999
Q ss_pred Hhchh---hHHhHHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHHHHHhccCCCCCcccc
Q psy14676 148 QAGHR---FAEHIERVMPLILKYSREE--DDELREFCLQACEAFVQRCPKEIT--PHIQSITELCLTYITYDPNYNYEDE 220 (1827)
Q Consensus 148 ~~~~~---~~p~l~~i~p~l~~~~~~~--~delRe~al~ale~~~~~~p~e~~--p~l~~ii~~ll~~l~~dpn~~~~dd 220 (1827)
..+.. +.+|.+.+++.+.+.+.++ +.++|..++.++..++...+..+. .+.+.+++.+.+.+.
T Consensus 165 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------- 234 (861)
T 2bpt_A 165 SADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ---------- 234 (861)
T ss_dssp TSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT----------
T ss_pred cCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc----------
Confidence 87655 6789999999999988876 789999999998887654432221 112335555544331
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCH
Q psy14676 221 EEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREE 299 (1827)
Q Consensus 221 d~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee 299 (1827)
+..|++|+.+.++|..++..+++.+.+++. .+++.+...+.+.++
T Consensus 235 ----------------------------------~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 280 (861)
T 2bpt_A 235 ----------------------------------AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPND 280 (861)
T ss_dssp ----------------------------------CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSH
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 113799999999999999999998889998 999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccc-------CCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhcc-------CCHhHHHH
Q psy14676 300 NVKSDIFHAYMALLKGTRTF-------SPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLRE-------KSIRTRQD 365 (1827)
Q Consensus 300 ~VR~aa~~al~~ll~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d-------~~~~vR~a 365 (1827)
+||..++..+..+++..... ..+| ..+...+.+.++.++|.+++.|++ +++.+|.+
T Consensus 281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~ 350 (861)
T 2bpt_A 281 KVASMTVEFWSTICEEEIDIAYELAQFPQSP----------LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMS 350 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS----------CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCc----------hhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHH
Confidence 99999999999988653210 0010 001134556778889999888874 34689999
Q ss_pred HHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHH
Q psy14676 366 CLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAA 445 (1827)
Q Consensus 366 ~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~ 445 (1827)
+...+..++..+|. ..++.++|.+.+.++ +.+|++|.+|+
T Consensus 351 a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~-------------------------------------~~~~~~r~~a~ 390 (861)
T 2bpt_A 351 AGACLQLFAQNCGN---HILEPVLEFVEQNIT-------------------------------------ADNWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHHHGG---GGHHHHHHHHHHHTT-------------------------------------CSSHHHHHHHH
T ss_pred HHHHHHHHHHHccH---hHHHHHHHHHHHHcC-------------------------------------CCChhHHHHHH
Confidence 99999999998873 456788888888872 24699999999
Q ss_pred HHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchh
Q psy14676 446 KCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQV 524 (1827)
Q Consensus 446 ~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~ 524 (1827)
.+++.++...+ +.+.++++.++|.++..+.|.++.||..+..+++.+.+.++....
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----------------------- 447 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID----------------------- 447 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-----------------------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC-----------------------
Confidence 99999997765 778899999999999999999999999999888888766541000
Q ss_pred hHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHH
Q psy14676 525 PSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 604 (1827)
Q Consensus 525 ~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~ 604 (1827)
...+...+++.++.+++|. .+||
T Consensus 448 --------------------------------------------------------~~~~~~~~l~~l~~~l~~~-~~v~ 470 (861)
T 2bpt_A 448 --------------------------------------------------------PQQHLPGVVQACLIGLQDH-PKVA 470 (861)
T ss_dssp --------------------------------------------------------TTTTHHHHHHHHHHHHTSC-HHHH
T ss_pred --------------------------------------------------------CHHHHHHHHHHHHHHhccC-hHHH
Confidence 0012345667777777776 8899
Q ss_pred HHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhC
Q psy14676 605 NLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELA 684 (1827)
Q Consensus 605 ~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~ 684 (1827)
..|..+++.+++.+++.. . -.+.+|
T Consensus 471 ~~a~~al~~l~~~~~~~~-~---~~l~~~--------------------------------------------------- 495 (861)
T 2bpt_A 471 TNCSWTIINLVEQLAEAT-P---SPIYNF--------------------------------------------------- 495 (861)
T ss_dssp HHHHHHHHHHHHHHSSSS-S---CGGGGG---------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccc-c---hhhHHH---------------------------------------------------
Confidence 888888877765543100 0 000011
Q ss_pred cCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHH
Q psy14676 685 PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLN 764 (1827)
Q Consensus 685 ~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~ 764 (1827)
++.++|.++.
T Consensus 496 ---------------------------------~~~il~~L~~------------------------------------- 505 (861)
T 2bpt_A 496 ---------------------------------YPALVDGLIG------------------------------------- 505 (861)
T ss_dssp ---------------------------------HHHHHHHHHH-------------------------------------
T ss_pred ---------------------------------HHHHHHHHHH-------------------------------------
Confidence 1111111110
Q ss_pred HhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHH
Q psy14676 765 MLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHL 844 (1827)
Q Consensus 765 ~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l 844 (1827)
.
T Consensus 506 --------------------------------------------~----------------------------------- 506 (861)
T 2bpt_A 506 --------------------------------------------A----------------------------------- 506 (861)
T ss_dssp --------------------------------------------H-----------------------------------
T ss_pred --------------------------------------------H-----------------------------------
Confidence 0
Q ss_pred HhhhcHHHHHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhccc--------------
Q psy14676 845 VMSCNLQLYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-------------- 909 (1827)
Q Consensus 845 ~~~~~~~~~~~l~~~l~~~l~~-~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~-------------- 909 (1827)
+.+ +.++.+|..++.+++.++...|..+.+|+..++|.+++.+.+.
T Consensus 507 -------------------l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~ 567 (861)
T 2bpt_A 507 -------------------ANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567 (861)
T ss_dssp -------------------HTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred -------------------HhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHH
Confidence 111 2235678888888999999999999999999999999887632
Q ss_pred -chHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhccccc
Q psy14676 910 -DDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTST 988 (1827)
Q Consensus 910 -~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~ 988 (1827)
..++|..++++++.++..++..+.||++.
T Consensus 568 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-------------------------------------------------- 597 (861)
T 2bpt_A 568 SLQELQSNILTVLAAVIRKSPSSVEPVADM-------------------------------------------------- 597 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTGGGHHH--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--------------------------------------------------
Confidence 34567777777777776666555555432
Q ss_pred chhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCCh-hhHHHHHHHHHHHHHhccc
Q psy14676 989 SGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSA-LMRTTHQSNQTFNVIIQRN 1067 (1827)
Q Consensus 989 ~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~-~~R~~a~~~L~~l~~~~~~ 1067 (1827)
++|.+.+.+++.++ ..|+.++.+++.++...+.
T Consensus 598 ----------------------------------------------l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~ 631 (861)
T 2bpt_A 598 ----------------------------------------------LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK 631 (861)
T ss_dssp ----------------------------------------------HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG
T ss_pred ----------------------------------------------HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh
Confidence 23333444444445 6788889999988888887
Q ss_pred cccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCC
Q psy14676 1068 DIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADI 1147 (1827)
Q Consensus 1068 ~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~ 1147 (1827)
.+.+| ++.++|.++..++++.+.++..++.+++.+++.+. ..+.||+..+++.++..+.+.+.
T Consensus 632 ~~~~~----------l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~~l~~~l~~~l~~~~~ 694 (861)
T 2bpt_A 632 GFEKY----------LETFSPYLLKALNQVDSPVSITAVGFIADISNSLE-------EDFRRYSDAMMNVLAQMISNPNA 694 (861)
T ss_dssp GGHHH----------HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-------GGGHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHH----------HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc-------hhccchHHHHHHHHHHHhCCccc
Confidence 88888 99999999999999999999999999999998763 46889999999999999985445
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhh-------------hhhHHHHHHHHHHHhcCCC--ccccch
Q psy14676 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRN-------------EITRLTTVKALTKIAASPL--RIDLRP 1212 (1827)
Q Consensus 1148 d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~-------------e~tR~~av~al~~ia~~~~--~~dl~p 1212 (1827)
+.++|+.++.++|.++..+|+.+.+|++.++|.+++.+.. ...|..++++++.++.... ...+.+
T Consensus 695 ~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~ 774 (861)
T 2bpt_A 695 RRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFP 774 (861)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGG
T ss_pred cHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6889999999999999999999999999999999998874 2348999999999886432 245788
Q ss_pred hhhhhHhhhhhhhcch----hHHHHHHHHHHHHHHHHhC-CCCcChHhHH-HHHHHhhhhcC---CCChhHHHHHHHHHH
Q psy14676 1213 ILTDGIPILGSFLRKN----QRALKLSTLLLLDTLLVNY-PSAISTEMLN-KVTVELAPLVS---ESDLHIAQLTLTLLT 1283 (1827)
Q Consensus 1213 ~~~~~l~~L~~~Lrk~----~r~lR~~al~aL~~L~~~~-~~~l~~~~~~-~ll~~L~~ll~---d~D~~l~~~al~~L~ 1283 (1827)
|++.+++.+...+.+. ++.+|.+++.+|+.++..+ +..+.+- +. .+++.|...+. +.+..++..+--++.
T Consensus 775 ~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~ 853 (861)
T 2bpt_A 775 YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQF-YGQDWVIDYIKRTRSGQLFSQATKDTARWARE 853 (861)
T ss_dssp GHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGG-TTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHH-HhcHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 9999998888888764 7899999999999999998 6655432 23 45555554443 455566666555555
Q ss_pred HHH
Q psy14676 1284 SIA 1286 (1827)
Q Consensus 1284 ~l~ 1286 (1827)
.+.
T Consensus 854 ~~~ 856 (861)
T 2bpt_A 854 QQK 856 (861)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=5.7e-34 Score=393.11 Aligned_cols=667 Identities=13% Similarity=0.156 Sum_probs=483.1
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcc-CCCCchhHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhh
Q psy14676 35 CRRITGKLSTAIEKQE-DVSVQLEALDILSDLLSRFG-ALLPSFHFVILTALLPQLSSP--RQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~-~~~v~~~al~iL~~l~~~~~-~~l~~~~~~il~~ll~~L~~~--~~~VRk~Ai~aL~~l~~~~ 110 (1827)
...++|.|++.+.++. ++.+|..++.+|+.+++.+. ..+..+.+.+++.+...+.++ +..||..|+.|++.++...
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999887643 78999999999999999874 334557788999999999887 6899999999999988765
Q ss_pred chhH----HHH-HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH-HHHHHHHhhcccCchHHHHHHHHHHH
Q psy14676 111 NLQL----YTK-LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE-RVMPLILKYSREEDDELREFCLQACE 184 (1827)
Q Consensus 111 ~~~~----~~~-l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~-~i~p~l~~~~~~~~delRe~al~ale 184 (1827)
++.. +.. +++.+...+ ++.+..+|..++++++.+++..++.+.||+. .+++++++.+.++++++|..|+.++.
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 5331 112 344444433 4456889999999999999999999999999 99999999888888999988887776
Q ss_pred HHHHhC---------------------CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCC
Q psy14676 185 AFVQRC---------------------PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDE 243 (1827)
Q Consensus 185 ~~~~~~---------------------p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde 243 (1827)
.++... .....++++.++|.+++.+... ++
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~-----------------------------~~ 335 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ-----------------------------DE 335 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC-----------------------------CS
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc-----------------------------cc
Confidence 666531 1123456788999998877531 00
Q ss_pred CCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCC
Q psy14676 244 GEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLT 323 (1827)
Q Consensus 244 ~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~ 323 (1827)
|+||.+|++|++|+.+|+.++...++ .+++.++|.+...+++.+|.+|.+++.+++.+....
T Consensus 336 --------d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~------- 397 (876)
T 1qgr_A 336 --------NDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP------- 397 (876)
T ss_dssp --------SCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-------
T ss_pred --------cccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC-------
Confidence 01123699999999999999998874 457889999999999999999999999999887321
Q ss_pred CCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccc--ccCchhhHHHHHHHHhhhhhc
Q psy14676 324 PSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC--LAPSLPALIPDVTSVAEWDEE 401 (1827)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~--l~~~l~~Llp~i~~~L~~~~~ 401 (1827)
....+.++++.++|.+++.|+|+++.||.+++..++.++...+.. ..+|++.++|.+...+.
T Consensus 398 ------------~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~---- 461 (876)
T 1qgr_A 398 ------------EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS---- 461 (876)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT----
T ss_pred ------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc----
Confidence 113456789999999999999999999999999999999998875 46899999999999873
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--------------hhhhhhHHhhh
Q psy14676 402 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--------------DLIGDMYRLVS 467 (1827)
Q Consensus 402 ~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--------------~~f~~~~~~l~ 467 (1827)
+ .+++|..++.++..++...+ +.+.||++.++
T Consensus 462 ---------------------------------~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il 507 (876)
T 1qgr_A 462 ---------------------------------A-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV 507 (876)
T ss_dssp ---------------------------------S-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH
T ss_pred ---------------------------------C-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHH
Confidence 1 26799999999999998876 34889999999
Q ss_pred hhHHHhhcch---hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHH
Q psy14676 468 PPLIARFKER---EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQ 544 (1827)
Q Consensus 468 ~~L~~~~~d~---~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~ 544 (1827)
|.++..+.+. ..++|..++++++.+++..|.. .......
T Consensus 508 ~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~--------------------~~~~~~~------------------ 549 (876)
T 1qgr_A 508 QKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD--------------------CYPAVQK------------------ 549 (876)
T ss_dssp HHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST--------------------THHHHHH------------------
T ss_pred HHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh--------------------hHHHHHH------------------
Confidence 9999998765 4689999999999999876620 0001111
Q ss_pred hHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcch----hhHHHHHHHhhhhHHHHhh-
Q psy14676 545 DCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKN----GEVQNLAVKCLGPLFKALT- 619 (1827)
Q Consensus 545 ~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~----~eV~~~A~~~lg~l~~~~~- 619 (1827)
+++.+.+.+.+ .+. +.. ...++.+ .+++..+..+++.+++.++
T Consensus 550 -l~~~l~~~l~~---------------~~~---~~~-------------~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~ 597 (876)
T 1qgr_A 550 -TTLVIMERLQQ---------------VLQ---MES-------------HIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 597 (876)
T ss_dssp -HHHHHHHHHHH---------------HHT---TTT-------------SCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred -HHHHHHHHHHH---------------HHH---HHh-------------ccCChhhHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 11111111000 000 000 0001222 3556666666655543333
Q ss_pred hhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHH
Q psy14676 620 KIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTL 699 (1827)
Q Consensus 620 ~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~ 699 (1827)
. ++.+|
T Consensus 598 ~--------~~~~~------------------------------------------------------------------ 603 (876)
T 1qgr_A 598 Q--------DALQI------------------------------------------------------------------ 603 (876)
T ss_dssp H--------HHHTT------------------------------------------------------------------
T ss_pred h--------hhhHH------------------------------------------------------------------
Confidence 1 00111
Q ss_pred HHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhh
Q psy14676 700 TLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQ 779 (1827)
Q Consensus 700 ~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~ 779 (1827)
.+.++|.++.++
T Consensus 604 ------------------~~~l~~~l~~~l-------------------------------------------------- 615 (876)
T 1qgr_A 604 ------------------SDVVMASLLRMF-------------------------------------------------- 615 (876)
T ss_dssp ------------------HHHHHHHHHHHC--------------------------------------------------
T ss_pred ------------------HHHHHHHHHHHH--------------------------------------------------
Confidence 122222222111
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHH
Q psy14676 780 AFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDF 859 (1827)
Q Consensus 780 al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~ 859 (1827)
.+
T Consensus 616 -------------------------------~~----------------------------------------------- 617 (876)
T 1qgr_A 616 -------------------------------QS----------------------------------------------- 617 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------Hh-----------------------------------------------
Confidence 00
Q ss_pred HHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhccc-chHHHHHHHHHHHHHHhhCCCcccccccc
Q psy14676 860 LLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-DDELREFCLQACEAFVQRCPKEITPHIQS 938 (1827)
Q Consensus 860 l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~-~~~vre~al~Ale~~v~~~~~~i~p~l~~ 938 (1827)
.+..+.+|+.++.+++.++...|..|.||++.++|.++..+.+. ++++|..|+.+++.++..++..+.||+
T Consensus 618 ------~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-- 689 (876)
T 1qgr_A 618 ------TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-- 689 (876)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH--
T ss_pred ------ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH--
Confidence 00002456677788888888889999999999999999999986 788999998888776654443333332
Q ss_pred ccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhh
Q psy14676 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN 1018 (1827)
Q Consensus 939 i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~ 1018 (1827)
+.+
T Consensus 690 ------------------------------------------------------------~~i----------------- 692 (876)
T 1qgr_A 690 ------------------------------------------------------------DEV----------------- 692 (876)
T ss_dssp ------------------------------------------------------------HHH-----------------
T ss_pred ------------------------------------------------------------HHH-----------------
Confidence 222
Q ss_pred HHHHHHhhhcccCCCCchHHHHHHhcc--CChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcC
Q psy14676 1019 VVAECLGKLTLIDPSNLLPRLQESLKS--NSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGD 1096 (1827)
Q Consensus 1019 ~a~e~Lg~L~~~~~~~llP~L~~~L~s--~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D 1096 (1827)
+|.+.+.+++ .+...|..++.+++.++...+..+.+| ++.++|.+.+++.+
T Consensus 693 -----------------~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~----------l~~~~~~l~~~~~~ 745 (876)
T 1qgr_A 693 -----------------MQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKY----------LEVVLNTLQQASQA 745 (876)
T ss_dssp -----------------HHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGG----------HHHHHHHHHHHHTC
T ss_pred -----------------HHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHH----------HHHHHHHHHHHHhc
Confidence 2333334433 245688889999998877777778888 99999999998875
Q ss_pred Cc-----------hhhHHHHHHHHHHHHHHhccCCCCC---CCCcchhHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHH
Q psy14676 1097 NF-----------YKITAEALLVLQQFVKVIRPLTSPS---SYDFAPFTSDIYQCTLVRLKAADI--DQEVKERAISCMG 1160 (1827)
Q Consensus 1097 ~~-----------~~V~~eAl~~l~~lv~~l~~~~~~~---~~~~~~~l~~l~~~ll~~L~~~D~--d~eVre~Ai~alg 1160 (1827)
+. ..+|..++.+++.+++.+.+...+. ...+.||+..+++.+..... |. +.+||..|+.++|
T Consensus 746 ~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~vr~~a~~~l~ 823 (876)
T 1qgr_A 746 QVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG--DEDHTDGVVACAAGLIG 823 (876)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT--CSCCCHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHH
Confidence 52 3788999999999998876421110 14678999999976654433 44 7899999999999
Q ss_pred HHHHHhhh-hhhhh-hhhhHHHHHH-hhh--hhhhHHHHHHHHHHHhc
Q psy14676 1161 QIICNLGD-YLKSE-LPVCLPILLD-RLR--NEITRLTTVKALTKIAA 1203 (1827)
Q Consensus 1161 ~l~~~~g~-~l~~~-l~~lL~~Ll~-~L~--~e~tR~~av~al~~ia~ 1203 (1827)
.++...|. .+.++ ...+++.+++ .+. +..+|.+|+.++|.++.
T Consensus 824 ~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 824 DLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 99999998 88887 5678888888 664 34569999999999874
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=9e-34 Score=391.11 Aligned_cols=777 Identities=13% Similarity=0.160 Sum_probs=551.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHH-----------
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS--PRQAVRKRTIVALSHLVM----------- 108 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~--~~~~VRk~Ai~aL~~l~~----------- 108 (1827)
+++++.+ ++..+|..|...|.++... ..+.+...+++.|.+ .++.||..|..+|.+.+.
T Consensus 6 ~L~~~~s-~d~~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 6 ILEKTVS-PDRLELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHGGGC-SCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 3444443 4889999999999886542 235677777777765 468999999999998762
Q ss_pred ----hhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC--chHHHHHHHHH
Q psy14676 109 ----SCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE--DDELREFCLQA 182 (1827)
Q Consensus 109 ----~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~--~delRe~al~a 182 (1827)
.++++....+-..+++.|.++ +..+ ..++++++.+++.... ..++++++|.+++.++++ ++.+|+.++.+
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~~-~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~ 153 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGTE-TYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTC-CSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCC-cHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 234444455556677777653 3456 8999999999987532 256889999999999887 88999999999
Q ss_pred HHHHHHhC-CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 183 CEAFVQRC-PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 183 le~~~~~~-p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
+..++..+ |+.+.+|++.+++.+.+.+..+ +.+|.+|
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~------------------------------------------~~~~~vr 191 (876)
T 1qgr_A 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKE------------------------------------------EPSNNVK 191 (876)
T ss_dssp HHHHHHHSCHHHHGGGHHHHHHHHHHHHSTT------------------------------------------CSCHHHH
T ss_pred HHHHHHhcCHhhHHhHHHHHHHHHHHhhcCC------------------------------------------CCCHHHH
Confidence 99999887 4557889999999999877321 1246899
Q ss_pred HHHHHHHHHHHHHcCCchhh--hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 262 RAAAKCLEAIIATRRDLIGD--MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 262 raAak~L~~l~~~~~~~l~~--~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
..|.+++..++...++.+.. ..+.+++.+...+.+.++++|..++.+++.+++... ..
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~--------------------~~ 251 (876)
T 1qgr_A 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--------------------QY 251 (876)
T ss_dssp HHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG--------------------GG
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH--------------------HH
Confidence 99999999988653322211 112467778888888899999999999999986432 23
Q ss_pred HHhhhH-HHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCc---------------------ccccCchhhHHHHHHHHhh
Q psy14676 340 LSTQVP-SLVKALQCQLREKSIRTRQDCLALLRELVQTLP---------------------GCLAPSLPALIPDVTSVAE 397 (1827)
Q Consensus 340 l~~~lp-~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~---------------------~~l~~~l~~Llp~i~~~L~ 397 (1827)
+.++++ .+++.+.+.+++.++.||..++.++..++...+ ....++++.++|.+.+.+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 566777 889999999999999999999999988876531 0112356788888888873
Q ss_pred hhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcch
Q psy14676 398 WDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER 477 (1827)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~ 477 (1827)
+. ++| +++..|++|.+|..++..++...|+ ..++.+++.+...+.+.
T Consensus 332 ~~-----------------~~d-------------~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~ 378 (876)
T 1qgr_A 332 KQ-----------------DEN-------------DDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP 378 (876)
T ss_dssp CC-----------------CSS-------------CCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS
T ss_pred cc-----------------ccc-------------ccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCC
Confidence 10 000 0123589999999999999998884 34567788888889999
Q ss_pred hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCC
Q psy14676 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557 (1827)
Q Consensus 478 ~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~ 557 (1827)
++++|.+|+..++.+.+..+. +
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~~---------------------------------------~------------------- 400 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPEP---------------------------------------S------------------- 400 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCH---------------------------------------H-------------------
T ss_pred ChHHHHHHHHHHHHHHcCCCH---------------------------------------H-------------------
Confidence 999999999988877643220 0
Q ss_pred CccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccch
Q psy14676 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDG 637 (1827)
Q Consensus 558 dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~ 637 (1827)
.+ ..+..++++.++.+++|++..||..|..++|++++.++.. .+..++++.+
T Consensus 401 ----------~~------------~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~------~~~~~~l~~~ 452 (876)
T 1qgr_A 401 ----------QL------------KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA------AINDVYLAPL 452 (876)
T ss_dssp ----------HH------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG------TSSTTTHHHH
T ss_pred ----------HH------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchh------cccHHHHHHH
Confidence 00 0123467888888999999999999999999998776541 1223455555
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhh
Q psy14676 638 IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 717 (1827)
Q Consensus 638 i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~ 717 (1827)
++.|...++++ ...|..++.++..+...++.. ..
T Consensus 453 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~--------------------------------------~~------- 486 (876)
T 1qgr_A 453 LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEA--------------------------------------AD------- 486 (876)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHT--------------------------------------TS-------
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhc--------------------------------------cc-------
Confidence 55555555443 223333333333221000000 00
Q ss_pred hhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhh
Q psy14676 718 AASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQR 797 (1827)
Q Consensus 718 ~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~ 797 (1827)
. + ++
T Consensus 487 -------------------------------------------------~-----~----------------------~~ 490 (876)
T 1qgr_A 487 -------------------------------------------------V-----A----------------------DD 490 (876)
T ss_dssp -------------------------------------------------C-----T----------------------TS
T ss_pred -------------------------------------------------c-----c----------------------cc
Confidence 0 0 00
Q ss_pred hhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCC--CChhhHHH
Q psy14676 798 EALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTN--KSTSTNRT 875 (1827)
Q Consensus 798 ~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~vr~~ 875 (1827)
+ +.. .+ ..-..++..+++.+...+... ....+|..
T Consensus 491 ~-----------~~~---~~-----------------------------~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 491 Q-----------EEP---AT-----------------------------YCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp C-----------CCC---CC-----------------------------CSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred c-----------ccc---cc-----------------------------hhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 0 000 00 000123445666666655442 24578999
Q ss_pred HHHHHHHHHHhccccchhhhhhhHHHHHHhhcc-----------cc----hHHHHHHHHHHHHHHhhCC-Cccccccccc
Q psy14676 876 YIQCFAAICRQAGHRFAEHIERVMPLILKYSRE-----------ED----DELREFCLQACEAFVQRCP-KEITPHIQSI 939 (1827)
Q Consensus 876 ~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d-----------~~----~~vre~al~Ale~~v~~~~-~~i~p~l~~i 939 (1827)
++.+++.+++..|..+.+|+..++|.+++.+.+ ++ +++|..++.+++.++...+ ..+.||++
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-- 605 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISD-- 605 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH--
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHH--
Confidence 999999999999999999999999999988763 12 3456666677666655554 44444433
Q ss_pred cccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhH
Q psy14676 940 GRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNV 1019 (1827)
Q Consensus 940 ~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~ 1019 (1827)
.+
T Consensus 606 ------------------------------------------------------------~l------------------ 607 (876)
T 1qgr_A 606 ------------------------------------------------------------VV------------------ 607 (876)
T ss_dssp ------------------------------------------------------------HH------------------
T ss_pred ------------------------------------------------------------HH------------------
Confidence 23
Q ss_pred HHHHHhhhcccCCCCchHHHHHHhccCC--hhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCC
Q psy14676 1020 VAECLGKLTLIDPSNLLPRLQESLKSNS--ALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDN 1097 (1827)
Q Consensus 1020 a~e~Lg~L~~~~~~~llP~L~~~L~s~~--~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~ 1097 (1827)
+|.+.+.+++.. +..|..++.+++.++...+..+.|| ++.++|.+...+.+.
T Consensus 608 ----------------~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~----------~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 608 ----------------MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY----------MEAFKPFLGIGLKNY 661 (876)
T ss_dssp ----------------HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG----------HHHHHHHHHHHHHHC
T ss_pred ----------------HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHcCc
Confidence 233333333322 3578889999998888888888888 999999999999987
Q ss_pred -chhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy14676 1098 -FYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPV 1176 (1827)
Q Consensus 1098 -~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~ 1176 (1827)
.+.||..|+.+++.+++.+. ..+.||+..+++.++..+...+.+.++|..++.++|.++...|..+.++++.
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~ 734 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQ-------SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEV 734 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHG-------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHH
Confidence 89999999999999998874 4678999999999999998544567899999999999999999999999999
Q ss_pred hHHHHHHhhhhh-------------hhHHHHHHHHHHHhcCCCc---------cccchhhhhhHhhhhhhhcch--hHHH
Q psy14676 1177 CLPILLDRLRNE-------------ITRLTTVKALTKIAASPLR---------IDLRPILTDGIPILGSFLRKN--QRAL 1232 (1827)
Q Consensus 1177 lL~~Ll~~L~~e-------------~tR~~av~al~~ia~~~~~---------~dl~p~~~~~l~~L~~~Lrk~--~r~l 1232 (1827)
++|.+.+.++.. ..|..+.++++.++..... ..+.||++.+++.+.....+. +..+
T Consensus 735 ~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~v 814 (876)
T 1qgr_A 735 VLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGV 814 (876)
T ss_dssp HHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHH
T ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 999999887522 4588888888877653211 356788888887666655655 6789
Q ss_pred HHHHHHHHHHHHHhCCC-CcChHhHHHHHHHhhh-hcCCCChhHHHHHHHHHHHHHHhC
Q psy14676 1233 KLSTLLLLDTLLVNYPS-AISTEMLNKVTVELAP-LVSESDLHIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1233 R~~al~aL~~L~~~~~~-~l~~~~~~~ll~~L~~-ll~d~D~~l~~~al~~L~~l~~~~ 1289 (1827)
|.+++.+|+.++...+. .+.+-..+.+++.+.. .+.+.|..+|+.+..+++.+.+..
T Consensus 815 r~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 815 VACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 99999999999998776 4433223456666666 778999999999999999888743
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.3e-33 Score=384.02 Aligned_cols=703 Identities=16% Similarity=0.184 Sum_probs=533.9
Q ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH
Q psy14676 40 GKLSTAIE--KQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT 116 (1827)
Q Consensus 40 P~Ll~~l~--~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~ 116 (1827)
+.|...+. .+.++.+|..|.-.|-..+.+.-..+.+ ....+.+.+++.|.++++.||..+..+++.++..-....+.
T Consensus 48 ~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp 127 (852)
T 4fdd_A 48 NYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP 127 (852)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCT
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccH
Confidence 44444443 3458899999999888777654444544 45688999999999999999999999999999987667788
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH-----hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC
Q psy14676 117 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE-----HIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 117 ~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p-----~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p 191 (1827)
.+++.+++.+.+ ++..+|..++.+++.+++..+..+.+ ++..++|.+++.+++++.++|..|+.++..++...+
T Consensus 128 ~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 128 DLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp THHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 888889888865 45789999999999999998877654 378899999999999999999999998887776666
Q ss_pred CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHH
Q psy14676 192 KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 271 (1827)
Q Consensus 192 ~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l 271 (1827)
+.+.++++.+++.+++.+.. .++.||+.|+++|..+
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d--------------------------------------------~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGD--------------------------------------------EEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTC--------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC--------------------------------------------CCHHHHHHHHHHHHHH
Confidence 66777888899988876521 1247999999999999
Q ss_pred HHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHH
Q psy14676 272 IATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351 (1827)
Q Consensus 272 ~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l 351 (1827)
+..+++.+.++++.+++.+...+++.+++||..|+.++..+++. ..+...+.+.++.++|.+
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~------------------~~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ------------------PICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS------------------TTHHHHHTTTHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc------------------hhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887742 124456778889999999
Q ss_pred HHHh-----------cc-----------CCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCC
Q psy14676 352 QCQL-----------RE-----------KSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGG 409 (1827)
Q Consensus 352 ~~~L-----------~d-----------~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~ 409 (1827)
++.| .| .+..+|.++...++.++...|. ..++.++|.+...+.
T Consensus 305 l~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~------------ 369 (852)
T 4fdd_A 305 VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLF------------ 369 (852)
T ss_dssp HHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHT------------
T ss_pred HHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhc------------
Confidence 8887 34 3457899999999999998874 456788888888873
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHH
Q psy14676 410 GEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAY 489 (1827)
Q Consensus 410 ~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l 489 (1827)
+.+|++|.+|+.+++.+++..++.+.++++.++|.++..+.|.++.||..+..++
T Consensus 370 -------------------------~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l 424 (852)
T 4fdd_A 370 -------------------------HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTL 424 (852)
T ss_dssp -------------------------CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2469999999999999999888888899999999999999999999999999988
Q ss_pred HHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHH
Q psy14676 490 MALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDL 569 (1827)
Q Consensus 490 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl 569 (1827)
+.+.+..+-. .
T Consensus 425 ~~l~~~~~~~-~-------------------------------------------------------------------- 435 (852)
T 4fdd_A 425 SRYAHWVVSQ-P-------------------------------------------------------------------- 435 (852)
T ss_dssp HHTHHHHHHS-C--------------------------------------------------------------------
T ss_pred HHHHHHhccc-h--------------------------------------------------------------------
Confidence 8887644310 0
Q ss_pred HHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhh
Q psy14676 570 MSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ 649 (1827)
Q Consensus 570 ~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~ 649 (1827)
...+...+++.++..+.|.+.+||..|..+++.+++..+. .+.+|++.+++.|...+++.+
T Consensus 436 -----------~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~--------~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 436 -----------PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--------ELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp -----------TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG--------GGGGGHHHHHHHHHHHHHHCC
T ss_pred -----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH--------hhHhHHHHHHHHHHHHHHHhC
Confidence 0012346777888888899999999999999999877663 234555555554443332211
Q ss_pred hhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhh
Q psy14676 650 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIA 729 (1827)
Q Consensus 650 ~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~ 729 (1827)
..
T Consensus 497 ~~------------------------------------------------------------------------------ 498 (852)
T 4fdd_A 497 HK------------------------------------------------------------------------------ 498 (852)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred hH------------------------------------------------------------------------------
Confidence 00
Q ss_pred cccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy14676 730 KSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKE 809 (1827)
Q Consensus 730 ~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~ 809 (1827)
T Consensus 499 -------------------------------------------------------------------------------- 498 (852)
T 4fdd_A 499 -------------------------------------------------------------------------------- 498 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccc
Q psy14676 810 LKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH 889 (1827)
Q Consensus 810 l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~ 889 (1827)
....++.+++.++.+.|+
T Consensus 499 --------------------------------------------------------------~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 499 --------------------------------------------------------------NLLILYDAIGTLADSVGH 516 (852)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHGG
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHHhhh
Confidence 001112222223333333
Q ss_pred cc--hhhhhhhHHHHHH---hhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChH
Q psy14676 890 RF--AEHIERVMPLILK---YSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSE 964 (1827)
Q Consensus 890 ~~--~~yl~~ilP~ll~---~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e 964 (1827)
.+ .+|++.++|.+++ .+.++++++| .++++++.++...+..+.||++.+.+
T Consensus 517 ~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~----------------------- 572 (852)
T 4fdd_A 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ----------------------- 572 (852)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH-----------------------
T ss_pred hhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH-----------------------
Confidence 33 3588999999984 5566777776 67788777776666666666654322
Q ss_pred hHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhc
Q psy14676 965 EVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLK 1044 (1827)
Q Consensus 965 ~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~ 1044 (1827)
.+++.+-..+... + .....++ ...
T Consensus 573 -----------------------------------~~~~~l~~~l~~~----------~---~~~~~~~--------~~~ 596 (852)
T 4fdd_A 573 -----------------------------------RCVNLVQKTLAQA----------M---LNNAQPD--------QYE 596 (852)
T ss_dssp -----------------------------------HHHHHHHHHHHHH----------H---HHHHCTT--------TSC
T ss_pred -----------------------------------HHHHHHHHHHHHH----------H---HhhcCCc--------ccC
Confidence 1111110000000 0 0000000 001
Q ss_pred cCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhh--hhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCC
Q psy14676 1045 SNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFY--YFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSP 1122 (1827)
Q Consensus 1045 s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l--~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~ 1122 (1827)
.++...+..++.+++.++...+..+.+| + +.+++.++.++.|+.+.||..++.+++.+++.+.
T Consensus 597 ~~d~~~~~~~l~~l~~l~~~l~~~~~~~----------~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----- 661 (852)
T 4fdd_A 597 APDKDFMIVALDLLSGLAEGLGGNIEQL----------VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF----- 661 (852)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHGGGGHHH----------HHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-----
T ss_pred CCcchHHHHHHHHHHHHHHHHhHhHHHH----------hcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-----
Confidence 2234578888899998888888888887 7 7899999999999999999999999999998753
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh----hhHHHHHHHH
Q psy14676 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE----ITRLTTVKAL 1198 (1827)
Q Consensus 1123 ~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e----~tR~~av~al 1198 (1827)
..+.+|+..+++.+...+. +.+.++|..|+.++|.++.++|..+.|+...+++.|+..+++. ..|..++.++
T Consensus 662 --~~~~~~l~~~lp~l~~~l~--~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~i 737 (852)
T 4fdd_A 662 --QHVKPCIADFMPILGTNLN--PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI 737 (852)
T ss_dssp --GGTGGGHHHHHHHHHHTCC--TTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcC--ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 5788999999999999885 6688999999999999999999999999999999999999764 3488899999
Q ss_pred HHHhcCCCccccchhhhhhHhhhhhhhcc-hhHHHHHHHHHHHHHHHHhCCCCcCh
Q psy14676 1199 TKIAASPLRIDLRPILTDGIPILGSFLRK-NQRALKLSTLLLLDTLLVNYPSAIST 1253 (1827)
Q Consensus 1199 ~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk-~~r~lR~~al~aL~~L~~~~~~~l~~ 1253 (1827)
|.++... ...+.|+++++++.+...|++ .+...|..++.+|..++...+..+.+
T Consensus 738 grl~~~~-~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~ 792 (852)
T 4fdd_A 738 GRLGYVC-PQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ 792 (852)
T ss_dssp HHHHHHC-HHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHhC-HHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHH
Confidence 9998752 234568899999998888874 55667999999999999987765443
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.3e-30 Score=338.84 Aligned_cols=562 Identities=14% Similarity=0.149 Sum_probs=425.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy14676 2 VSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVIL 81 (1827)
Q Consensus 2 ~~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il 81 (1827)
-+++.++|..+..+|+++...+++. ...++++|.|.+.+ ++++.+|..+..+|+.+...+++. .+...++
T Consensus 20 ~s~~~~~R~~A~~~l~~i~~~~~~~------~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ll 89 (588)
T 1b3u_A 20 RNEDVQLRLNSIKKLSTIALALGVE------RTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGP--EYVHCLL 89 (588)
T ss_dssp TCSCHHHHHHHHHTHHHHHHHSCHH------HHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGGH
T ss_pred hcccHHHHHHHHHhHHHHHHHhCHH------HHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcH--HHHHHHH
Confidence 4677899999999999998877553 34788999998776 347899999999988776665442 2445677
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHH
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 161 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~ 161 (1827)
+.+...+.++++.||+.|+.+++.++..+++..+.+.+.+++..+.++++..+|..++.+++.++...+.. +.+.++
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~ 166 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELR 166 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHH
Confidence 87777778899999999999999999999887666666666666666667889999999999998877643 467889
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCC
Q psy14676 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGE 241 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~d 241 (1827)
|.+.+.++++++++|..|.+++..++..++.+ .+.+.++|.+.+.+..
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d------------------------------ 214 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASD------------------------------ 214 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTC------------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcC------------------------------
Confidence 99999999999999999999999999988764 3567788888766521
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCC
Q psy14676 242 DEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSP 321 (1827)
Q Consensus 242 de~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~ 321 (1827)
.+|.||.+|+++|+.++...++ ..+.+.++|.+...+++.+|.||..++.+++.+....+.
T Consensus 215 --------------~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--- 275 (588)
T 1b3u_A 215 --------------EQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--- 275 (588)
T ss_dssp --------------SCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---
T ss_pred --------------CcHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---
Confidence 1368999999999999988764 245678899999999999999999999999999864321
Q ss_pred CCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccccc--CchhhHHHHHHHHhhhh
Q psy14676 322 LTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLA--PSLPALIPDVTSVAEWD 399 (1827)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~--~~l~~Llp~i~~~L~~~ 399 (1827)
....+.+++.+.+.++|+++.||.++...++.+...++.... .+.+.++|.+...++
T Consensus 276 -------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-- 334 (588)
T 1b3u_A 276 -------------------EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS-- 334 (588)
T ss_dssp -------------------HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT--
T ss_pred -------------------ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc--
Confidence 123566788899999999999999999999999998876432 578889999988872
Q ss_pred hcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhh
Q psy14676 400 EEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREE 479 (1827)
Q Consensus 400 ~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~ 479 (1827)
|.+|++|.+++.+++.++...|... +.+.+.|.+...++|.++
T Consensus 335 -----------------------------------d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~ 377 (588)
T 1b3u_A 335 -----------------------------------DANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECP 377 (588)
T ss_dssp -----------------------------------CSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCH
T ss_pred -----------------------------------CCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCch
Confidence 3579999999999999999888422 245688889999999999
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCc
Q psy14676 480 NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDK 559 (1827)
Q Consensus 480 ~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dp 559 (1827)
+||..++..+..+.+.+|..
T Consensus 378 ~Vr~~a~~~l~~l~~~~~~~------------------------------------------------------------ 397 (588)
T 1b3u_A 378 EVRLNIISNLDCVNEVIGIR------------------------------------------------------------ 397 (588)
T ss_dssp HHHHHHHTTCHHHHHHSCHH------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCHH------------------------------------------------------------
Confidence 99999998877777654410
Q ss_pred cccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhh
Q psy14676 560 DFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIP 639 (1827)
Q Consensus 560 d~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~ 639 (1827)
.....+++.+..++.|.+.+||..+..+++.+++.++.. .+.+.++|
T Consensus 398 -----------------------~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----------~~~~~l~~ 444 (588)
T 1b3u_A 398 -----------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----------FFDEKLNS 444 (588)
T ss_dssp -----------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----------GCCHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH----------HHHHHHHH
Confidence 011234555566677888888888888888888777641 13355678
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhh
Q psy14676 640 ILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 719 (1827)
Q Consensus 640 ~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~ 719 (1827)
.+..++++++..+|.+++.++..+...++.. ...+
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---------------------------------------------~~~~ 479 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKE---------------------------------------------WAHA 479 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---------------------------------------------HHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---------------------------------------------hHHH
Confidence 8888888887788888777777764333210 0123
Q ss_pred hhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhh
Q psy14676 720 SILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREA 799 (1827)
Q Consensus 720 ~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~ 799 (1827)
.++|.+..+.++
T Consensus 480 ~llp~l~~~~~~-------------------------------------------------------------------- 491 (588)
T 1b3u_A 480 TIIPKVLAMSGD-------------------------------------------------------------------- 491 (588)
T ss_dssp HTHHHHHHTTTC--------------------------------------------------------------------
T ss_pred HHHHHHHHHhhC--------------------------------------------------------------------
Confidence 344444321100
Q ss_pred hhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHH-HHHHHHHHhhhcCCCChhhHHHHHH
Q psy14676 800 LPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLY-TKLIDFLLEGLTTNKSTSTNRTYIQ 878 (1827)
Q Consensus 800 ~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~~l~ 878 (1827)
... .+|..++.+++.+...++.+.| ..+++.++.. .+++++.||..++.
T Consensus 492 ----------------~~~-------------~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 492 ----------------PNY-------------LHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM-AGDPVANVRFNVAK 541 (588)
T ss_dssp ----------------SCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHG-GGCSCHHHHHHHHH
T ss_pred ----------------CCH-------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh-CCCCCchHHHHHHH
Confidence 000 1566667777777666665543 3444444443 44778899999999
Q ss_pred HHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHH
Q psy14676 879 CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEA 923 (1827)
Q Consensus 879 ~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~ 923 (1827)
+++.+++..|..+.. +.++|.+.+.+.|.+.+||..|..|++.
T Consensus 542 ~l~~l~~~~~~~~~~--~~~~p~l~~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 542 SLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHHHHGGGSCHHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhH--HHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 999999988875432 6788888887888999999999999876
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.96 E-value=1.1e-27 Score=314.78 Aligned_cols=545 Identities=14% Similarity=0.149 Sum_probs=406.5
Q ss_pred hhHHHHHHHHHHHhhhcH-HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccch
Q psy14676 833 NLQLTIVALSHLVMSCNL-QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDD 911 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~ 911 (1827)
+|..|+.+|+.++...++ .....+++.+.... ++++.+|..+...++.+....+. ..|...++|.+...+.++++
T Consensus 26 ~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ll~~L~~l~~~~~~ 101 (588)
T 1b3u_A 26 LRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEET 101 (588)
T ss_dssp HHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGGGGGGHHHHHHHTTSSCH
T ss_pred HHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHhCchH
Confidence 788899999888776553 44556666665544 56778898888888877765544 25778888888887778888
Q ss_pred HHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchh
Q psy14676 912 ELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGV 991 (1827)
Q Consensus 912 ~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~ 991 (1827)
.+|+.|.+++..+...++.+
T Consensus 102 ~vR~~a~~~L~~l~~~~~~~------------------------------------------------------------ 121 (588)
T 1b3u_A 102 VVRDKAVESLRAISHEHSPS------------------------------------------------------------ 121 (588)
T ss_dssp HHHHHHHHHHHHHHTTSCHH------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCHH------------------------------------------------------------
Confidence 89988888876644322110
Q ss_pred hhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccc
Q psy14676 992 AQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHN 1071 (1827)
Q Consensus 992 ~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~ 1071 (1827)
.+. ..++|.+.+..+++++..|..++.+++.++.+.+..
T Consensus 122 -~~~-------------------------------------~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 122 -DLE-------------------------------------AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp -HHH-------------------------------------HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred -HHH-------------------------------------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 000 123555555566777888999999888776655432
Q ss_pred cccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHH
Q psy14676 1072 HNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEV 1151 (1827)
Q Consensus 1072 ~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eV 1151 (1827)
+ .+.++|.+...+.|+++.||..|+.+++.+++.+.+ ..+...+++.+...+. |.+..|
T Consensus 161 ~----------~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---------~~~~~~l~~~l~~~~~--d~~~~v 219 (588)
T 1b3u_A 161 V----------KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---------DNVKSEIIPMFSNLAS--DEQDSV 219 (588)
T ss_dssp H----------HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---------HHHHHTHHHHHHHHHT--CSCHHH
T ss_pred H----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---------HhHHHHHHHHHHHHhc--CCcHHH
Confidence 2 567889999999999999999999999999976431 1345667777776665 788999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchh
Q psy14676 1152 KERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ 1229 (1827)
Q Consensus 1152 re~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~ 1229 (1827)
|..|+.+++.+....++. ...+.++|.+.+.+++++| |..+++++|.++..... +.+...+++.+..++++++
T Consensus 220 r~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~ 294 (588)
T 1b3u_A 220 RLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCE 294 (588)
T ss_dssp HTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCc
Confidence 999999999999877652 3456688888888877766 99999999999864221 2245677888999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCh-HhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAIST-EMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRH 1308 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~-~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~ 1308 (1827)
+.+|.+++.+|+.++...+..... ...+.++|.+..+++|.++.+|..++.+|+.++... |..
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~----------------~~~ 358 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL----------------GKD 358 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH----------------CHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh----------------hHh
Confidence 999999999999999977654221 356678888889999999999998887776665422 211
Q ss_pred cCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh-----hhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccc
Q psy14676 1309 TDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG-----NLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQST 1382 (1827)
Q Consensus 1309 ~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~-----~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~ 1382 (1827)
. ..+.+.|.+...++|++++||.+|..+||.++.. ..+.++|.+.+.+++ ++..|..++.+|+.+....
T Consensus 359 ~---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-- 433 (588)
T 1b3u_A 359 N---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL-- 433 (588)
T ss_dssp H---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH--
T ss_pred H---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHc--
Confidence 1 1356889999999999999999999999986532 235688999888766 3344555566666665422
Q ss_pred cccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC-----CcchHHHHHhhhcCCHHHHHHHHHHHHHH
Q psy14676 1383 STSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP-----SNLLPRLQESLKSNSALMRTTVLTAVKFT 1457 (1827)
Q Consensus 1383 s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p-----~~~lP~L~~~l~~~~~~~R~t~l~Alk~~ 1457 (1827)
|.. .+.+.+++.++..+.+.+..+|..++.++|.++...+ ..++|.|.+..+++++.+|.+++.++..+
T Consensus 434 ---~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 434 ---GVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp ---CGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred ---CHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 222 2446778888888878888899999999999987543 36789999888899999999999999888
Q ss_pred hhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy14676 1458 ISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDA 1537 (1827)
Q Consensus 1458 ~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~ 1537 (1827)
....+. . .+...++|.++.+++|++++||.++++++|.+.+.+..+.....+.+
T Consensus 508 ~~~~~~----~----------------------~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p 561 (588)
T 1b3u_A 508 SEVCGQ----D----------------------ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKP 561 (588)
T ss_dssp HHHHHH----H----------------------HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHhcCH----H----------------------HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 643210 0 12356789999999999999999999999999988876665566667
Q ss_pred HHhhhcccccccccCCccchhHHHHHHHhhh
Q psy14676 1538 LCSNMVSDKEQLRDISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1538 l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~ 1568 (1827)
++..+..|.+ ++||+.|..++.+.
T Consensus 562 ~l~~l~~d~d-------~~vr~~a~~al~~l 585 (588)
T 1b3u_A 562 ILEKLTQDQD-------VDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHTTCSS-------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCCc-------hhHHHHHHHHHHHh
Confidence 6666666544 49999999999765
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.87 E-value=1.2e-20 Score=239.92 Aligned_cols=303 Identities=15% Similarity=0.161 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhc-cCCCCchhHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhh
Q psy14676 35 CRRITGKLSTAIEKQE-DVSVQLEALDILSDLLSRF-GALLPSFHFVILTALLPQLSSP--RQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~-~~~v~~~al~iL~~l~~~~-~~~l~~~~~~il~~ll~~L~~~--~~~VRk~Ai~aL~~l~~~~ 110 (1827)
...++|.|++.+.++. ++.+|+.++.+|+.+++++ +..+.++.+.+++.++..|+++ ++.||+.|+.|++.+++.+
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5679999999997643 7899999999999999988 5666678889999999999987 7999999999999987765
Q ss_pred chh----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH-HHHHHHHhhcccCchHHHHHHHHHHHH
Q psy14676 111 NLQ----LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE-RVMPLILKYSREEDDELREFCLQACEA 185 (1827)
Q Consensus 111 ~~~----~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~-~i~p~l~~~~~~~~delRe~al~ale~ 185 (1827)
.+. .+..++-..+..+..+.+..+|+.++++++.+++..++.|.+|+. .++++++..+++.++++|..|+.++..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 432 122332223333345567899999999999999999999999999 999999998888899999888777766
Q ss_pred HHHhC---------------------CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCC
Q psy14676 186 FVQRC---------------------PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEG 244 (1827)
Q Consensus 186 ~~~~~---------------------p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~ 244 (1827)
++..- ...+.+|++.++|.+++.+... |+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~-----------------------------d~- 335 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ-----------------------------DE- 335 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC-----------------------------CS-
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc-----------------------------cc-
Confidence 65531 1234567899999998877421 00
Q ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCC
Q psy14676 245 EDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTP 324 (1827)
Q Consensus 245 e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~ 324 (1827)
|++|.+|++|++|+.+|+.++...++ .+++.++|.+...+++++|.+|.+++.+++.+++...
T Consensus 336 -------d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~------- 398 (462)
T 1ibr_B 336 -------NDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE------- 398 (462)
T ss_dssp -------SCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------
T ss_pred -------ccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-------
Confidence 01234699999999999999999884 5678899999999999999999999999999884210
Q ss_pred CCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc--cCchhhHHHHHHHHh
Q psy14676 325 SDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL--APSLPALIPDVTSVA 396 (1827)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l--~~~l~~Llp~i~~~L 396 (1827)
...+.++++.++|.+.+.|+|++++||.+|+..++.++..++..+ .+|++.++|.+...|
T Consensus 399 ------------~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 399 ------------PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp ------------TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred ------------HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 023456788999999999999999999999999999999998765 589999999988766
No 12
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.83 E-value=1.2e-17 Score=231.85 Aligned_cols=587 Identities=13% Similarity=0.115 Sum_probs=338.5
Q ss_pred HHHHHHHHHHHHHHHhh-CCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc---------
Q psy14676 6 EQLRDISSIGLKTVISE-LPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS--------- 75 (1827)
Q Consensus 6 ~~~Rdi~~~~Lktvi~~-lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~--------- 75 (1827)
..+|...+.++..|... .|. . .+.++|.|++.++++ ++..+.+++.+|..+++++...+..
T Consensus 99 ~~ir~~l~~~ia~ia~~d~p~-~-------Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~ 169 (960)
T 1wa5_C 99 NNLQVQIGEAISSIADSDFPD-R-------WPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKL 169 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT-T-------CTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcc-c-------hhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence 34555556566555543 442 1 578999999988654 6778899999999999988653322
Q ss_pred ----hhHHHHH---HHhhhcCCCCH---HHH------HHHHHHHHHHHH-hhch---hHHHHHHHHHHHhccC-------
Q psy14676 76 ----FHFVILT---ALLPQLSSPRQ---AVR------KRTIVALSHLVM-SCNL---QLYTKLIDFLLEGLTT------- 128 (1827)
Q Consensus 76 ----~~~~il~---~ll~~L~~~~~---~VR------k~Ai~aL~~l~~-~~~~---~~~~~l~~~ll~~L~~------- 128 (1827)
+.+.+++ .+.+.++++.. .+| ..++.++..+.. ..++ +.+...++.+.+.|..
T Consensus 170 ~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 249 (960)
T 1wa5_C 170 VLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLED 249 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccC
Confidence 1111222 22333554322 233 334445544331 1122 2234444444444422
Q ss_pred C---CC----HHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcc-----cCchHHHHHHHHHHHHHHHhCC-----
Q psy14676 129 N---KS----TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSR-----EEDDELREFCLQACEAFVQRCP----- 191 (1827)
Q Consensus 129 ~---~~----~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~-----~~~delRe~al~ale~~~~~~p----- 191 (1827)
+ .. ..+|+.++.++..+++..++.|.||++.+++++++.+. ..+++++ .+++++|...+.
T Consensus 250 d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~al~fl~~~~~~~~~~ 326 (960)
T 1wa5_C 250 PDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILV---SKSLSFLTAVTRIPKYF 326 (960)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHH---HHHHHHHHHHHTSHHHH
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHH---HHHHHHHHHHhCcHhHH
Confidence 1 00 24688999999999999999999999999999998774 2355555 556666655442
Q ss_pred Cccc--cchHHHH-HHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHH
Q psy14676 192 KEIT--PHIQSIT-ELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCL 268 (1827)
Q Consensus 192 ~e~~--p~l~~ii-~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L 268 (1827)
+.+. +|++.++ +.++.+|.+.+ +|++.| +++ .+|+-. + +.+++..|.+|+||..+|
T Consensus 327 ~~~~~~~~l~~li~~~i~~~m~~~~----~d~e~w------------~~d--p~e~i~-~--d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 327 EIFNNESAMNNITEQIILPNVTLRE----EDVELF------------EDD--PIEYIR-R--DLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp GGGCSHHHHHHHHHHTHHHHHSCCG----GGTTTT------------TTC--HHHHHH-H--HHHC----CHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHhHHhcCCCH----HHHHHH------------hcC--HHHHHH-h--ccCcccccCcHHHHHHHH
Confidence 2354 8999999 79999997742 111112 000 000000 0 001233579999999999
Q ss_pred HHHHHHcCCchhhhHHhhhHHHHhhcC------CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHh
Q psy14676 269 EAIIATRRDLIGDMYRLVSPPLIARFK------EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLST 342 (1827)
Q Consensus 269 ~~l~~~~~~~l~~~~~~v~p~L~~~l~------e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 342 (1827)
..++..+++ .+++.+++.+.+.+. ..+|..|.+|+.+++++...... ... ... . . .....
T Consensus 386 ~~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~-~~~------~~~--~-~-~~~~~ 451 (960)
T 1wa5_C 386 KELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNI-TNA------GVS--S-T-NNLLN 451 (960)
T ss_dssp HHHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCC-BTT------BCC--C-B-CTTCC
T ss_pred HHHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhcc-ccC------Ccc--c-c-ccccc
Confidence 999998874 345556666666554 67899999999999999743110 000 000 0 0 00011
Q ss_pred hhHHHHHHHHHHhccC---CHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccC
Q psy14676 343 QVPSLVKALQCQLREK---SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEED 419 (1827)
Q Consensus 343 ~lp~Iv~~l~~~L~d~---~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed 419 (1827)
..+-++..+...|.|+ ++.||..++-.++.++..++ .++++.++|.+.+.+.+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d--------------------- 507 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQT--------------------- 507 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCC---------------------
Confidence 2222344555666777 99999988889999988774 35789999999988731
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHh-----------hhhhhhhHHhhhhhHHHhhcch-----hhhhHH
Q psy14676 420 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-----------RDLIGDMYRLVSPPLIARFKER-----EENVKS 483 (1827)
Q Consensus 420 ~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~-----------~~~f~~~~~~l~~~L~~~~~d~-----~~~Vr~ 483 (1827)
.+-+||.+|+.++..|+... +..+.||++.+++.|+..++.. ......
T Consensus 508 ----------------~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 508 ----------------DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp ----------------SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred ----------------CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 25789999999999999742 3568899999999999988764 122446
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcC-CCcccc
Q psy14676 484 DIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTS-SDKDFR 562 (1827)
Q Consensus 484 ~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d-~dpd~R 562 (1827)
.++.++..++..++- . +.+.+..++..+...+. ...++ .++.++
T Consensus 572 ~l~~al~~vv~~~~~-----~---------------~~p~~~~l~~~L~~~l~---------------~~~~~~~~~~~~ 616 (960)
T 1wa5_C 572 FLMRSIFRVLQTSED-----S---------------IQPLFPQLLAQFIEIVT---------------IMAKNPSNPRFT 616 (960)
T ss_dssp HHHHHHHHHHHHHTT-----T---------------TGGGHHHHHHHHHHHHH---------------HHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHHH-----h---------------hhhHHHHHHHHHHHHHH---------------HHHhCCCCcHHH
Confidence 777788887776651 0 11222333333333221 11122 244455
Q ss_pred ccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhh
Q psy14676 563 FMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILG 642 (1827)
Q Consensus 563 f~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~ 642 (1827)
...++.+...++...-..-......+++.+...+.....+...++...++.+++.. .++.+++..+.|.+.
T Consensus 617 ~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS---------ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC---------SSCCTTTGGGHHHHT
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc---------cCCCHHHHHHHHHHc
Confidence 33444444443320111122467788999999998777788889999999888665 134567777777776
Q ss_pred --hhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhh
Q psy14676 643 --SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAAS 720 (1827)
Q Consensus 643 --~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~ 720 (1827)
..++... .=...+.++...+..++..+.+ ++.+...+-.++.+... ...++.+++.++..-+...+.+..+.
T Consensus 688 ~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~ 761 (960)
T 1wa5_C 688 APNVWELKG--NIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQ 761 (960)
T ss_dssp SGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred CHHHhcCCC--CchhHHHHHHHHHHhChHHHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHH
Confidence 5544331 1123334455544433322221 11122212122222211 15667777776654332213333444
Q ss_pred hhHHHhhhh
Q psy14676 721 ILPQVLQIA 729 (1827)
Q Consensus 721 llp~ll~l~ 729 (1827)
+++.++..+
T Consensus 762 i~~~l~~~l 770 (960)
T 1wa5_C 762 IAVLLLQRL 770 (960)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 455444433
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.81 E-value=8.3e-18 Score=213.64 Aligned_cols=411 Identities=15% Similarity=0.164 Sum_probs=299.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHH-----------
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS--PRQAVRKRTIVALSHLVM----------- 108 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~--~~~~VRk~Ai~aL~~l~~----------- 108 (1827)
++.++.+ ++..+|..|-..|.++... ..+.+...+++.+.+ .++.||..|...|.+++.
T Consensus 6 ~L~~~~s-~d~~~r~~Ae~~L~~~~~~-------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 6 ILEKTVS-PDRLELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4444443 4889999999999886542 123455555666654 368999999999999873
Q ss_pred ----hhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC--chHHHHHHHHH
Q psy14676 109 ----SCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE--DDELREFCLQA 182 (1827)
Q Consensus 109 ----~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~--~delRe~al~a 182 (1827)
.++++....+-..++..|.+. +..+ +.+.++++.+++..... .++++++|.+++.++++ ++.+|+.|+.+
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 344555555556677777654 3456 88999999999886432 35788999999998887 88999999999
Q ss_pred HHHHHHhC-CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 183 CEAFVQRC-PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 183 le~~~~~~-p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
+..+++.+ |+.+.+|++.+++.+++.+..+ +.++.||
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~------------------------------------------~~~~~vr 191 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKE------------------------------------------EPSNNVK 191 (462)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT------------------------------------------CCCHHHH
T ss_pred HHHHHHhCCchhhHhHHHHHHHHHHHHhCCC------------------------------------------CCCHHHH
Confidence 99999987 6778899999999999887421 0135799
Q ss_pred HHHHHHHHHHHHHcCCchhh--hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 262 RAAAKCLEAIIATRRDLIGD--MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 262 raAak~L~~l~~~~~~~l~~--~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
.+|++++..++....+.+.. +.+.+++.+...+.+.+++||..++.++..++.... ..
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--------------------~~ 251 (462)
T 1ibr_B 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--------------------QY 251 (462)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG--------------------GG
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--------------------HH
Confidence 99999999876432211111 123357777777888999999999999999986432 23
Q ss_pred HHhhhH-HHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC---------------------cccccCchhhHHHHHHHHhh
Q psy14676 340 LSTQVP-SLVKALQCQLREKSIRTRQDCLALLRELVQTL---------------------PGCLAPSLPALIPDVTSVAE 397 (1827)
Q Consensus 340 l~~~lp-~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl---------------------~~~l~~~l~~Llp~i~~~L~ 397 (1827)
+.++++ .+++.++..++|.++.||..++.++..++... ...+.+|++.++|.+.+.+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 331 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH
Confidence 445667 88888888899999999999999998888753 01123466889998888873
Q ss_pred hhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcch
Q psy14676 398 WDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER 477 (1827)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~ 477 (1827)
+. ++ | +++..|.+|.+|..++..++...|+ ..++.++|.+...+++.
T Consensus 332 ~~-----------------d~----------d---~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 332 KQ-----------------DE----------N---DDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP 378 (462)
T ss_dssp CC-----------------CS----------S---CCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCS
T ss_pred hc-----------------cc----------c---cccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCC
Confidence 10 00 0 0123588999999999999998884 45567788888899999
Q ss_pred hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCC
Q psy14676 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557 (1827)
Q Consensus 478 ~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~ 557 (1827)
++++|.+|+.+++.+.+.... ..+
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~-~~~------------------------------------------------------- 402 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEP-SQL------------------------------------------------------- 402 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCT-TTT-------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHhcCCcH-HHH-------------------------------------------------------
Confidence 999999999999888763220 000
Q ss_pred CccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccch
Q psy14676 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDG 637 (1827)
Q Consensus 558 dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~ 637 (1827)
....+++++.+..+++|++..||..|..+||.+++.++.. ++..+|++.+
T Consensus 403 ------------------------~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~------~~~~~~l~~l 452 (462)
T 1ibr_B 403 ------------------------KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA------AINDVYLAPL 452 (462)
T ss_dssp ------------------------CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG------CCSTTTHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc------cccHHHHHHH
Confidence 0012457788889999999999999999999999887751 1123677777
Q ss_pred hhhhhhhh
Q psy14676 638 IPILGSFL 645 (1827)
Q Consensus 638 i~~l~~~l 645 (1827)
++.|...|
T Consensus 453 l~~Ll~~L 460 (462)
T 1ibr_B 453 LQCLIEGL 460 (462)
T ss_dssp HHHHHCC-
T ss_pred HHHHHHHh
Confidence 77776554
No 14
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.81 E-value=2.6e-15 Score=208.42 Aligned_cols=440 Identities=12% Similarity=0.138 Sum_probs=279.2
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccC------CCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy14676 40 GKLSTAIEK-QEDVSVQLEALDILSDLLSRFGA------LLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 40 P~Ll~~l~~-~~~~~v~~~al~iL~~l~~~~~~------~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
..|++.+.+ +.+..+|..|.-.|-..+.+.-. .+.+ ....|-..+++.|.++...||..+..+++.++..--
T Consensus 38 ~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~ 117 (960)
T 1wa5_C 38 LTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF 117 (960)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC
Confidence 455555533 34688999999999877665432 3444 345677788888776669999999999999998754
Q ss_pred hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch---------h----hHHhHHHHHHHHHh---hcccCc---
Q psy14676 112 LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH---------R----FAEHIERVMPLILK---YSREED--- 172 (1827)
Q Consensus 112 ~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~---------~----~~p~l~~i~p~l~~---~~~~~~--- 172 (1827)
+..|+.+++.+++.+.++ +...+..++.++..+++.... . +..+++.++.++.. .+++..
T Consensus 118 p~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~ 196 (960)
T 1wa5_C 118 PDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196 (960)
T ss_dssp TTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--C
T ss_pred ccchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 567888999999988653 456788899999999875431 1 22223323333222 233321
Q ss_pred hHHHHH---HHHHHHHHHH----hCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCC
Q psy14676 173 DELREF---CLQACEAFVQ----RCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGE 245 (1827)
Q Consensus 173 delRe~---al~ale~~~~----~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e 245 (1827)
..+|+. ...++..+.. ..|+.+..+++..++.+.+.+.+++.....|. |
T Consensus 197 ~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~---------------------d--- 252 (960)
T 1wa5_C 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPD---------------------E--- 252 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCc---------------------c---
Confidence 123421 1122222221 22555556677888888888866422100000 0
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcC-----CCCHhHHHHHHHHHHHHHhhhcccC
Q psy14676 246 DDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFK-----EREENVKSDIFHAYMALLKGTRTFS 320 (1827)
Q Consensus 246 ~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~-----e~ee~VR~aa~~al~~ll~~~~~~~ 320 (1827)
+++....|++|+.+.++|..++..+++.+.++.+.+++.+.+.+. ..++.++..++..|..+++...
T Consensus 253 -----~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~--- 324 (960)
T 1wa5_C 253 -----TEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK--- 324 (960)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH---
T ss_pred -----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh---
Confidence 001123589999999999999999998888888888887776653 5678999999999988874211
Q ss_pred CCCCCCCCCCCCCCChHhhHH--hhhHHHH-HHHHHHhc-----------------------cCCHhHHHHHHHHHHHHH
Q psy14676 321 PLTPSDPNQMDQEDSPLCLLS--TQVPSLV-KALQCQLR-----------------------EKSIRTRQDCLALLRELV 374 (1827)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~--~~lp~Iv-~~l~~~L~-----------------------d~~~~vR~a~~~ll~~L~ 374 (1827)
....+. +.++.++ +.+++.|. ++...+|.++..++..++
T Consensus 325 ---------------~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~ 389 (960)
T 1wa5_C 325 ---------------YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELK 389 (960)
T ss_dssp ---------------HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred ---------------HHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHH
Confidence 112333 5666666 45555442 112257889999999999
Q ss_pred HhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q psy14676 375 QTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIAT 454 (1827)
Q Consensus 375 ~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~ 454 (1827)
...+.. .++.+++.+.+.++.... +...+|+.|.+|+-+++.++..
T Consensus 390 ~~~~~~---v~~~~l~~i~~~l~~~~~-------------------------------~~~~~w~~reaal~algaia~~ 435 (960)
T 1wa5_C 390 EKNEVL---VTNIFLAHMKGFVDQYMS-------------------------------DPSKNWKFKDLYIYLFTALAIN 435 (960)
T ss_dssp HHCHHH---HHHHHHHHHHHHHHHHHC-----------------------------------CHHHHHHHHHHHHHHHBS
T ss_pred HHcchh---HHHHHHHHHHHHHHHhcc-------------------------------CcchhHHHHHHHHHHHHHHHHH
Confidence 998743 356677777666642100 0123599999999999999843
Q ss_pred h-----h-h------hhhhhHHhhhhhHHHhhcch---hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccch
Q psy14676 455 R-----R-D------LIGDMYRLVSPPLIARFKER---EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCL 519 (1827)
Q Consensus 455 ~-----~-~------~f~~~~~~l~~~L~~~~~d~---~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~ 519 (1827)
. | . .+.+++.. .+++.+++. ++.||..|+.+++.+.+.+.
T Consensus 436 ~~~~~~~~~~~~~~~~l~~~l~~---~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---------------------- 490 (960)
T 1wa5_C 436 GNITNAGVSSTNNLLNVVDFFTK---EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---------------------- 490 (960)
T ss_dssp SCCBTTBCCCBCTTCCHHHHHHH---HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----------------------
T ss_pred hccccCCcccccccccHHHHHHH---HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----------------------
Confidence 1 2 1 34444332 233344555 88888888877766653210
Q ss_pred hhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcc
Q psy14676 520 LSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 599 (1827)
Q Consensus 520 ~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~ 599 (1827)
+.....+++.+++++.|.
T Consensus 491 --------------------------------------------------------------~~~l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 491 --------------------------------------------------------------KAQLIELMPILATFLQTD 508 (960)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHTTCS
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHhCCC
Confidence 112345777888888898
Q ss_pred hhhHHHHHHHhhhhHHHHhhhh-hc-Cc-ccccccccccchhhhhhhhhhhh
Q psy14676 600 NGEVQNLAVKCLGPLFKALTKI-AA-SP-LRIDLRPILTDGIPILGSFLRKN 648 (1827)
Q Consensus 600 ~~eV~~~A~~~lg~l~~~~~~~-~~-~~-~~~dl~~~l~~~i~~l~~~l~~~ 648 (1827)
+..||..|..++..++...... .. .. -+.++.||++.+++.|...+++.
T Consensus 509 ~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 509 EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560 (960)
T ss_dssp CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc
Confidence 8999999999998886532100 00 01 12457899999999998887774
No 15
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.77 E-value=1.4e-15 Score=211.88 Aligned_cols=571 Identities=12% Similarity=0.075 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCC----Ch-h---hhhhHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHhh-c
Q psy14676 6 EQLRDISSIGLKTVISELPLG----SN-A---LAANVCRRITGKLSTAIEKQED-------VSVQLEALDILSDLLSR-F 69 (1827)
Q Consensus 6 ~~~Rdi~~~~Lktvi~~lp~~----~~-~---~~~~v~~~L~P~Ll~~l~~~~~-------~~v~~~al~iL~~l~~~-~ 69 (1827)
+..+.+.-..|+++.+|+-.. .. . ......+.+++.+.+.+++..+ ..++..++.++...+.. .
T Consensus 142 ~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ 221 (971)
T 2x1g_F 142 DVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIG 221 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCC
Confidence 456777777888887664211 10 0 0011234555555555533222 27889999999988875 2
Q ss_pred cCCCCchhHHHHHHHhhhc----------------CCCCHHHHHHHHHHHHHHHHhhch----hHHHHHHHHHHHhc---
Q psy14676 70 GALLPSFHFVILTALLPQL----------------SSPRQAVRKRTIVALSHLVMSCNL----QLYTKLIDFLLEGL--- 126 (1827)
Q Consensus 70 ~~~l~~~~~~il~~ll~~L----------------~~~~~~VRk~Ai~aL~~l~~~~~~----~~~~~l~~~ll~~L--- 126 (1827)
.|. . ....+++.++. | .++.+.+|+.|+.|+..++..-.. ..+..+++.++...
T Consensus 222 ip~-~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 298 (971)
T 2x1g_F 222 YTI-E-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEI 298 (971)
T ss_dssp CCG-G-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred cCc-c-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHH
Confidence 222 1 44567777776 5 124679999999999999984321 23444444444311
Q ss_pred c---CCCC---HHHHHHHHHHHHHHHHHhchhhH-----------HhHHHHHHHHHhhccc-----CchHHHHHHHHHHH
Q psy14676 127 T---TNKS---TSTNRTYIQCFAAICRQAGHRFA-----------EHIERVMPLILKYSRE-----EDDELREFCLQACE 184 (1827)
Q Consensus 127 ~---~~~~---~~~r~~ai~~l~~la~~~~~~~~-----------p~l~~i~p~l~~~~~~-----~~delRe~al~ale 184 (1827)
. .+.+ ......++..+..+++.....+. +++..+++.+++.+.. ++++++..|+..+.
T Consensus 299 ~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~ 378 (971)
T 2x1g_F 299 TKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWY 378 (971)
T ss_dssp HHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHH
Confidence 0 2223 36778888999988876655544 6788889988886632 46777766666554
Q ss_pred HHHHhC---------C---CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q psy14676 185 AFVQRC---------P---KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSD 252 (1827)
Q Consensus 185 ~~~~~~---------p---~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sd 252 (1827)
.++... + ..+.|+++.+++.+++.+.|+++. ++ + +++ .+
T Consensus 379 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~------~~----------~------~~d-------~~ 429 (971)
T 2x1g_F 379 MLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEK------SL----------A------KWS-------SD 429 (971)
T ss_dssp HHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTT------TT----------S------CSC-------HH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc------cc----------c------ccC-------Hh
Confidence 444411 1 234689999999999988763210 00 0 000 00
Q ss_pred CccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCC-----CCHhHHHHHHHHHHHHHhhhcccCCCCCCCC
Q psy14676 253 DDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKE-----REENVKSDIFHAYMALLKGTRTFSPLTPSDP 327 (1827)
Q Consensus 253 ddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e-----~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~ 327 (1827)
+++..-..|++++.+|..++...++ .+++.+++.+...+.. .+|..|.+++.+++++.+..
T Consensus 430 e~~~f~~~R~~~~~~l~~~~~~~~~---~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~----------- 495 (971)
T 2x1g_F 430 DLECFRCYRQDISDTFMYCYDVLND---YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHF----------- 495 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTT---HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhc-----------
Confidence 0111236899999999998877663 3455555555555432 78999999999999887432
Q ss_pred CCCCCCCChHhhHHhhhHHHHHHHHHHhc--cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCC
Q psy14676 328 NQMDQEDSPLCLLSTQVPSLVKALQCQLR--EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 328 ~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~--d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
.....+.++.+++ ++..+. |.++.||..++..++.++..+.... +|++.++|.+...+ +
T Consensus 496 ---------~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~------- 556 (971)
T 2x1g_F 496 ---------GGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N------- 556 (971)
T ss_dssp --------------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H-------
T ss_pred ---------ChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C-------
Confidence 1222457888888 445555 5699999999999999998876543 78999999999887 1
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcc--hhhhhHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKE--REENVKS 483 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d--~~~~Vr~ 483 (1827)
.+|+.+|+.++..+++..+..+.||++.++..+...+.. ...+.+.
T Consensus 557 --------------------------------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~ 604 (971)
T 2x1g_F 557 --------------------------------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSV 604 (971)
T ss_dssp --------------------------------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHH
T ss_pred --------------------------------hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHH
Confidence 127889999999999999988999999999999998876 3568889
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhh-----hhhHHhHHHH---HHHhhc
Q psy14676 484 DIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKS-----IRTRQDCLAL---LRELMT 555 (1827)
Q Consensus 484 ~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~-----~~~~~~~l~~---l~~~~~ 555 (1827)
.++++++.++...+. . ... ..+...+.++++.+........ ......++.. +.+.++
T Consensus 605 ~~~~ai~~i~~~~~~---~-----------~~~-~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~ 669 (971)
T 2x1g_F 605 RLMFSIGKLMSLLRP---E-----------EIP-KYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLN 669 (971)
T ss_dssp HHHHHHHHHHHTSCT---T-----------HHH-HHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCH---H-----------HHH-HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcC
Confidence 999998888864430 0 000 1133444555555554432211 0111122222 222222
Q ss_pred CCCccccccchHHHHHHHhhhc--cccchhhHHHHHHHHHHHhhcc--hhhHHHHHHHhhhhHHHHhhhhhcCccccccc
Q psy14676 556 SSDKDFRFMATNDLMSELQKDS--IKLDDDSERKVVKMLLRLLEDK--NGEVQNLAVKCLGPLFKALTKIAASPLRIDLR 631 (1827)
Q Consensus 556 d~dpd~Rf~a~~dl~~~~~~~~--~~~d~~~~~~i~~~l~~~l~D~--~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~ 631 (1827)
.....-+ ... .+.-..+..++++.+..++++. +.+|.+.+..++|++++.+++ ++.
T Consensus 670 ~~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--------~~~ 729 (971)
T 2x1g_F 670 TDVDEQA------------TDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--------SFQ 729 (971)
T ss_dssp C-------------------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------C
T ss_pred CCcCccc------------ccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--------hcc
Confidence 1100000 000 0111235677888888888653 579999999999999998874 567
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCc--ccHH---HHHHHHHHhCcCCC-------cchhhHHHHHH
Q psy14676 632 PILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA--ISTE---MLNKVTVELAPLVS-------ESDLHIAQLTL 699 (1827)
Q Consensus 632 ~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~--~~~~---~~~~v~~~~~~~~~-------~~~~~i~~~a~ 699 (1827)
||+|.+++.+...++...- ...+.+++.++..|+.. +.+. .+..+...+..+++ +.+++++...+
T Consensus 730 p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f 806 (971)
T 2x1g_F 730 PMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFF 806 (971)
T ss_dssp THHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHH
Confidence 8999999998877776421 35678888888888762 1111 11122222211111 23667888888
Q ss_pred HHHhhhhccCCC
Q psy14676 700 TLLTSIAKIQPN 711 (1827)
Q Consensus 700 ~~~~~i~~~~~~ 711 (1827)
.+++.+....|.
T Consensus 807 ~ll~~~l~~~p~ 818 (971)
T 2x1g_F 807 GCLTQIIKKIPQ 818 (971)
T ss_dssp HHHHHHHHSSGG
T ss_pred HHHHHHHHhCcH
Confidence 888877765443
No 16
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.75 E-value=4.1e-14 Score=197.10 Aligned_cols=384 Identities=12% Similarity=0.082 Sum_probs=215.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCC---CCHHHHHHHHHHHHHHHHhhchhHHH
Q psy14676 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSS---PRQAVRKRTIVALSHLVMSCNLQLYT 116 (1827)
Q Consensus 41 ~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~---~~~~VRk~Ai~aL~~l~~~~~~~~~~ 116 (1827)
.+...+....++.+|.-|..+|-..+.+--..+.+ ....+-+.+++.+.+ ..+.||.+...++..++...-+ .+.
T Consensus 43 ~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp 121 (971)
T 2x1g_F 43 FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWP 121 (971)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-ccc
Confidence 44455555568899999999998888765455544 444556666655532 3589999999999999988655 688
Q ss_pred HHHHHHHHhccCC-----CCHHHHHHHHHHHHHHHHHhc------------hhhHHhHHHHHHHHHhhcccC-c------
Q psy14676 117 KLIDFLLEGLTTN-----KSTSTNRTYIQCFAAICRQAG------------HRFAEHIERVMPLILKYSREE-D------ 172 (1827)
Q Consensus 117 ~l~~~ll~~L~~~-----~~~~~r~~ai~~l~~la~~~~------------~~~~p~l~~i~p~l~~~~~~~-~------ 172 (1827)
.+++.+++.+.++ .+...+..++..+..+++... +.+..+++.+++++.+.++.. .
T Consensus 122 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~ 201 (971)
T 2x1g_F 122 GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAE 201 (971)
T ss_dssp ----HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Confidence 8888888877542 135578888999998886421 335566778888777766421 1
Q ss_pred -hHHHHHHHHHHHHHHH--hCCCccccchHHHHHHHHHHh--cc-CCCCCcccccccCCCCCCCCCCCCcccCCCCCCCC
Q psy14676 173 -DELREFCLQACEAFVQ--RCPKEITPHIQSITELCLTYI--TY-DPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGED 246 (1827)
Q Consensus 173 -delRe~al~ale~~~~--~~p~e~~p~l~~ii~~ll~~l--~~-dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~ 246 (1827)
.+++..++.++..|+. .+|.. ....+++.++. + ++ .|.+..++ . .
T Consensus 202 ~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~--~-------------------~---- 252 (971)
T 2x1g_F 202 AYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGD--G-------------------C---- 252 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC-----C-------------------C----
T ss_pred chhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccc--c-------------------c----
Confidence 2789999999999998 46665 45677787776 4 11 11110000 0 0
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHcC-CchhhhHHhhhHHHHh-------hcCCCC---HhHHHHHHHHHHHHHhh
Q psy14676 247 DNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIA-------RFKERE---ENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 247 ~~e~sdddD~sWkVRraAak~L~~l~~~~~-~~l~~~~~~v~p~L~~-------~l~e~e---e~VR~aa~~al~~ll~~ 315 (1827)
+ .+..-.+|.+|.+|+..++.... .-..+.+..++|.+.. ...+.+ +++.......+..+.+.
T Consensus 253 ----~--~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~ 326 (971)
T 2x1g_F 253 ----M--TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER 326 (971)
T ss_dssp ----C--CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred ----c--CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 0 00112689999999999997432 1122344444444433 223444 25666666666655532
Q ss_pred hcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhc-----cCCHhHHHHHHHHHHHHHHhC---------c---
Q psy14676 316 TRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLR-----EKSIRTRQDCLALLRELVQTL---------P--- 378 (1827)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~-----d~~~~vR~a~~~ll~~L~~vl---------~--- 378 (1827)
...... +...+ ......+.+..+++.+++... ..+.+|+..++.++..+++.. +
T Consensus 327 ~~~~~~------~~~~~---~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~ 397 (971)
T 2x1g_F 327 HSTLLL------SGITS---ADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCW 397 (971)
T ss_dssp THHHHH------HHHHT---CCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHH
T ss_pred HHHHHH------HHhcc---CcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 110000 00000 000122466777888887663 356789998888888877622 1
Q ss_pred ccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh
Q psy14676 379 GCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL 458 (1827)
Q Consensus 379 ~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~ 458 (1827)
..+.++++.+++.+..-+.. + +++|.++ + +.+| +++ --..|.++.+++..++...|+.
T Consensus 398 ~~~~~~~~~ll~~l~~~~~~--------p--------~~~~~~~-~-d~~e---~~~-f~~~R~~~~~~l~~~~~~~~~~ 455 (971)
T 2x1g_F 398 EYIKPLYAHLTRILVRKSEQ--------P--------DEKSLAK-W-SSDD---LEC-FRCYRQDISDTFMYCYDVLNDY 455 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTSC--------C--------CTTTTSC-S-CHHH---HHH-HHHHHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHHHHHHHHhcC--------C--------Ccccccc-c-CHhH---HHH-HHHHHHHHHHHHHHHHHHHhHH
Confidence 12246666777776665421 0 0000000 0 0000 111 1257888999998888777622
Q ss_pred hhhhHHhhhhhHHHhhcc-----hhhhhHHHHHHHHHHHHh
Q psy14676 459 IGDMYRLVSPPLIARFKE-----REENVKSDIFHAYMALLK 494 (1827)
Q Consensus 459 f~~~~~~l~~~L~~~~~d-----~~~~Vr~~a~~~l~~L~~ 494 (1827)
+. +.+++.+.+.+.. ..++.|++++-.++.+.+
T Consensus 456 ~l---~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae 493 (971)
T 2x1g_F 456 IL---EILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAE 493 (971)
T ss_dssp HH---HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTT
T ss_pred HH---HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHh
Confidence 22 2222333333222 355667777766555543
No 17
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.74 E-value=3.1e-14 Score=198.22 Aligned_cols=294 Identities=12% Similarity=0.105 Sum_probs=186.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCC---CCHHHHHHHHHHHHHHHHhhchhHHH
Q psy14676 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSS---PRQAVRKRTIVALSHLVMSCNLQLYT 116 (1827)
Q Consensus 41 ~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~---~~~~VRk~Ai~aL~~l~~~~~~~~~~ 116 (1827)
.+...+++..++.+|.-|...|-..+.+--..+.+ ....+-+.+++.+.+ ..+.||.+...+++.++...-++.+.
T Consensus 61 ~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp 140 (963)
T 2x19_B 61 FSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140 (963)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc
Confidence 33444444558899999999998887765445544 344555555555532 35899999999999999876555577
Q ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHHHHHHHHh-------------chhhHHhHHHHHHHHHhhcccC--chHHHH
Q psy14676 117 KLIDFLLEGLTTN----KSTSTNRTYIQCFAAICRQA-------------GHRFAEHIERVMPLILKYSREE--DDELRE 177 (1827)
Q Consensus 117 ~l~~~ll~~L~~~----~~~~~r~~ai~~l~~la~~~-------------~~~~~p~l~~i~p~l~~~~~~~--~delRe 177 (1827)
.+++.+++.+.++ ++...+..++..+..+++.. .+.+..+++.+++++.+.++.. +++++.
T Consensus 141 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~ 220 (963)
T 2x19_B 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQ 220 (963)
T ss_dssp THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHH
T ss_pred hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 8888888877541 24567888999999998643 1234567788888888777543 235888
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccch
Q psy14676 178 FCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS 257 (1827)
Q Consensus 178 ~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~s 257 (1827)
.++.++..|+. ++..+. -.+.+++.+++.+. .
T Consensus 221 ~~l~~l~~wi~-~~~~~~-~~~~ll~~l~~~l~----------------------------------------------~ 252 (963)
T 2x19_B 221 KVLKCFSSWVQ-LEVPLQ-DCEALIQAAFAALQ----------------------------------------------D 252 (963)
T ss_dssp HHHHHHHHHHT-SSCCGG-GTHHHHHHHHHHTT----------------------------------------------S
T ss_pred HHHHHHHHHHc-CCCCcc-cchHHHHHHHHHhC----------------------------------------------C
Confidence 89999988987 544322 22667888876651 1
Q ss_pred hhHHHHHHHHHHHHHHHcC-CchhhhHHhhhHHHHhh-------cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q psy14676 258 WKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIAR-------FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQ 329 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~-~~l~~~~~~v~p~L~~~-------l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~ 329 (1827)
|.+|.+|.+|+..++.... ....+++..++|.++.. ....+.+.....+..+..++........
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~-------- 324 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALL-------- 324 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHH--------
Confidence 3578899999999997532 22234444444444432 2334444555555555555532110000
Q ss_pred CCCCCChHhhHHhhhHHHHHHHHHHhcc-----CCHhHHHHHHHHHHHHHHhC--------cc---cccCchhhHHHHHH
Q psy14676 330 MDQEDSPLCLLSTQVPSLVKALQCQLRE-----KSIRTRQDCLALLRELVQTL--------PG---CLAPSLPALIPDVT 393 (1827)
Q Consensus 330 ~~~~~~~~~~l~~~lp~Iv~~l~~~L~d-----~~~~vR~a~~~ll~~L~~vl--------~~---~l~~~l~~Llp~i~ 393 (1827)
.+ ....+.+..+++.+++.... .+.+++..|+.+...++... +. .+.++++.|++.+.
T Consensus 325 ----~~--~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll 398 (963)
T 2x19_B 325 ----DQ--VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLL 398 (963)
T ss_dssp ----HC--GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cC--ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00 00124567778888877664 45677888888888877632 11 23567777777776
Q ss_pred HHh
Q psy14676 394 SVA 396 (1827)
Q Consensus 394 ~~L 396 (1827)
.-+
T Consensus 399 ~~~ 401 (963)
T 2x19_B 399 HKA 401 (963)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 18
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.72 E-value=1.4e-13 Score=191.67 Aligned_cols=738 Identities=12% Similarity=0.075 Sum_probs=431.2
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhh-hhhhhhhhhHHHHHHHH
Q psy14676 586 RKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRK-NQRALKLSTLLLLDTLL 664 (1827)
Q Consensus 586 ~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~-~~~~lk~~~l~~l~~l~ 664 (1827)
.++..++..+....+++.|..|.+.|..+-+. |+..+.+..+|.+ .+...|+.++..+...+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----------------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i 86 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----------------PQAWHFSWQLLQPDKVPEIQYFGASALHIKI 86 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----------------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 34445555556667888999998877654221 2233344444443 35567888777777666
Q ss_pred hhCCCcccHHHHHHHHHHhCcCCCc---chhhHHHHHHHHHhhhhcc-CCCccchhhhhhhhHHHhhhhccccc---chh
Q psy14676 665 VNYPSAISTEMLNKVTVELAPLVSE---SDLHIAQLTLTLLTSIAKI-QPNALVEPAAASILPQVLQIAKSPLL---QGA 737 (1827)
Q Consensus 665 ~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~i~~~a~~~~~~i~~~-~~~~~~~~~~~~llp~ll~l~~s~~~---~~~ 737 (1827)
...-..+++.....++..+..++.. ....++.....++..|+.. -| +.|+.++|.+++.++++.. ...
T Consensus 87 ~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-----~~Wp~~l~~l~~~~~~~~~~~~~~~ 161 (963)
T 2x19_B 87 SRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-----DAWPCAVADMVRLFQAEDSPVDGQG 161 (963)
T ss_dssp HHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-----TTSTTHHHHHHHHHCC------CHH
T ss_pred HhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-----cccchHHHHHHHHHhhhccCCCcHH
Confidence 5443456666666666666555433 2477888888888887753 22 2599999999997765211 223
Q ss_pred hhhhHHHHHHHHHhhhCC---------------CCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhh---
Q psy14676 738 ALTSMLEFFKSLVLAELP---------------GLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREA--- 799 (1827)
Q Consensus 738 al~~l~~~~~~lv~~~~~---------------~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~--- 799 (1827)
.....+.++..+++.... ...++.+++.+...+..... .......+.+|++..+. .....
T Consensus 162 ~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~-~~~~~~~~l~~l~~wi~-~~~~~~~~ 239 (963)
T 2x19_B 162 RCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS-PSCVRQKVLKCFSSWVQ-LEVPLQDC 239 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTC-CHHHHHHHHHHHHHHHT-SSCCGGGT
T ss_pred HHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHc-CCCCcccc
Confidence 455667777777742111 12334455554444432211 11244456677755432 11111
Q ss_pred hhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhc----HHHHHHHHHHHHhhh------cCCCC
Q psy14676 800 LPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCN----LQLYTKLIDFLLEGL------TTNKS 869 (1827)
Q Consensus 800 ~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~----~~~~~~l~~~l~~~l------~~~~~ 869 (1827)
.+.++.+++.+.. ..+|..|+.|+..++..-. ...+..+.+.++..+ ..+.+
T Consensus 240 ~~ll~~l~~~l~~------------------~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 301 (963)
T 2x19_B 240 EALIQAAFAALQD------------------SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD 301 (963)
T ss_dssp HHHHHHHHHHTTS------------------TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhCC------------------chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 2233444444432 1378889999999987432 234444544444321 01234
Q ss_pred hhhHHHHHHHHHHHHHhccccch------hhhhhhHHHHHHhhcc-----cchHHHHHHHHHHHHHHhhCCCcccccccc
Q psy14676 870 TSTNRTYIQCFAAICRQAGHRFA------EHIERVMPLILKYSRE-----EDDELREFCLQACEAFVQRCPKEITPHIQS 938 (1827)
Q Consensus 870 ~~vr~~~l~~l~~L~~~~~~~~~------~yl~~ilP~ll~~l~d-----~~~~vre~al~Ale~~v~~~~~~i~p~l~~ 938 (1827)
....+.++.++..+.+..+..+. +++..+++.++...+. .+++++ ..++++|...+..... ++
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~---~~~l~fw~~l~~~~~~--~~- 375 (963)
T 2x19_B 302 METSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTS---SLTLTFWYTLQDDILS--FE- 375 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGG---GGGHHHHHHHHHHHTT--SC-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhh---hhhHHHHHHHHHHHHh--hh-
Confidence 46677888888888877665554 6788888888887764 345553 3456666543221000 00
Q ss_pred ccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhc-------
Q psy14676 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCEC------- 1011 (1827)
Q Consensus 939 i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~------- 1011 (1827)
+ + .+ ......++++++.+++.++..+.-
T Consensus 376 --~----------------------~-~~--------------------~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~ 410 (963)
T 2x19_B 376 --A----------------------E-KQ--------------------AVYQQVYRPVYFQLVDVLLHKAQFPSDEEYG 410 (963)
T ss_dssp --H----------------------H-HH--------------------HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred --h----------------------h-hh--------------------HHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 0 0 00 000011222222222222222100
Q ss_pred -----cc---cchhhHHHHHHhhhcccCCCCc----hHHHHHHh----ccCChhhHHHHHHHHHHHHHhccccccccccc
Q psy14676 1012 -----QE---EGTRNVVAECLGKLTLIDPSNL----LPRLQESL----KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEE 1075 (1827)
Q Consensus 1012 -----~e---~~vR~~a~e~Lg~L~~~~~~~l----lP~L~~~L----~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~ 1075 (1827)
++ ..-|..+.++|..++...+..+ ++.+.+.+ .+.+|..|++++.+++.++........++
T Consensus 411 ~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~--- 487 (963)
T 2x19_B 411 FWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDV--- 487 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSH---
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHH---
Confidence 00 1124455667766666555444 44455555 55689999999999999888776655555
Q ss_pred hhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy14676 1076 TSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERA 1155 (1827)
Q Consensus 1076 ~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~A 1155 (1827)
++.+++.+. .+.++.+.||..++.+++.+.+.+.. ...|+..+++.++..+. + +.|+..|
T Consensus 488 -------l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~--------~~~~l~~vl~~l~~~l~--~--~~V~~~A 547 (963)
T 2x19_B 488 -------VPGLIGLIP-RISISNVQLADTVMFTIGALSEWLAD--------HPVMINSVLPLVLHALG--N--PELSVSS 547 (963)
T ss_dssp -------HHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHH--------CHHHHTTTHHHHHHHTT--C--GGGHHHH
T ss_pred -------HHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHhC--C--chHHHHH
Confidence 778877543 45556789999999999999988753 12678888888888885 3 7899999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhh----hhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcc----
Q psy14676 1156 ISCMGQIICNLGDYLKSELPVCLPILLDRLRN----EITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRK---- 1227 (1827)
Q Consensus 1156 i~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~----e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk---- 1227 (1827)
+.++..+....+..+.|+++.++..+...+.+ ...|..+.++++.++......+..+++..+++.+...+..
T Consensus 548 ~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 627 (963)
T 2x19_B 548 VSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEE 627 (963)
T ss_dssp HHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998888999999999999887764 2358999999999986543345667888887776665532
Q ss_pred --h--hHHHHHHHHHHHHHHHHhCCCCcC---------------------hHhHHHHHHHhhhhcC--CCChhHHHHHHH
Q psy14676 1228 --N--QRALKLSTLLLLDTLLVNYPSAIS---------------------TEMLNKVTVELAPLVS--ESDLHIAQLTLT 1280 (1827)
Q Consensus 1228 --~--~r~lR~~al~aL~~L~~~~~~~l~---------------------~~~~~~ll~~L~~ll~--d~D~~l~~~al~ 1280 (1827)
+ .+..+...+++|+.+++..+...+ ......+++.+..++. ..+..+.+.++.
T Consensus 628 ~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~ 707 (963)
T 2x19_B 628 IPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCA 707 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 1 233455778888888887664321 1245556666655553 246688888899
Q ss_pred HHHHHHHhCCCccch--hh----------------HHhhhhhc----ccccCC-CchhhHHHHHHHh----cC---CCCH
Q psy14676 1281 LLTSIAKIQPNALVE--PA----------------AASILPQI----GRHTDL-TSVADLKQVILNA----FT---PTSE 1330 (1827)
Q Consensus 1281 ~L~~l~~~~~~~~~~--~~----------------i~~~lgei----G~~~~~-~~~~~l~~~~l~~----~~---~~s~ 1330 (1827)
++..++...+....+ |. +..+++.+ |..-.. +..+.++..++.+ +. .+.+
T Consensus 708 ~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~p 787 (963)
T 2x19_B 708 IFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHP 787 (963)
T ss_dssp HHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCH
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCc
Confidence 999888766644322 11 11112222 221000 1122333333332 22 2468
Q ss_pred hHHHHHHHHHhhhhhhh----------hhhhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhhhhchHHHHHH
Q psy14676 1331 EVKSAASYTLGSIAVGN----------LQQYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWA 1399 (1827)
Q Consensus 1331 eVr~aAa~aLG~i~~~~----------l~~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~ 1399 (1827)
+++.+....|+.+.... +..+++.++..++.. ....-..++.+.+++...........-+.+|.+.|..
T Consensus 788 d~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 867 (963)
T 2x19_B 788 DIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLI 867 (963)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999998888854322 344455555555432 2234456788888876421100001123466777777
Q ss_pred HHhhhhc-CCchhHHHHHHHHHHHhhccCCCcchHHHHHhh
Q psy14676 1400 QLFLHCE-CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL 1439 (1827)
Q Consensus 1400 ~L~~~~~-~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l 1439 (1827)
.++..+. ......-+..++.|..|...+|..+...+.+.+
T Consensus 868 ~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l 908 (963)
T 2x19_B 868 AVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEAL 908 (963)
T ss_dssp HHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred HHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHh
Confidence 7776653 222334456778887777666665555565555
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.66 E-value=9.7e-15 Score=184.83 Aligned_cols=388 Identities=12% Similarity=0.142 Sum_probs=271.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCR-RITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVI 80 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~-~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~i 80 (1827)
++..++|..+..+|+.+++.-..+ .....+.. .++|.|++.+.++.++.+|..|+.+|+.++..-.+.... .....
T Consensus 31 s~~~~~r~~A~~~L~~l~~~~~~~--~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 108 (450)
T 2jdq_A 31 SKSPEQQLSATQKFRKLLSKEPNP--PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGA 108 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSSC--CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCC--cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC
Confidence 456678999999999887622111 12222333 689999999987658999999999999998632221111 12357
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-chhhHH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA-GHRFAE 155 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~-~~~~~p 155 (1827)
++.+++.|+++++.||..|+.+|+.++...+.. .+ ...++.++..|.++.+..+|+.++.+++.+++.. +..-..
T Consensus 109 i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 188 (450)
T 2jdq_A 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA 188 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 889999999999999999999999999864321 11 1346777777776567899999999999999765 333233
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMD 234 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d 234 (1827)
.+..++|.+++.+.++++++|+.+..++..+....++..... -..++|.+++.+..
T Consensus 189 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------------------- 245 (450)
T 2jdq_A 189 KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH----------------------- 245 (450)
T ss_dssp GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-----------------------
Confidence 457889999999988899999888887777654322211111 12356666665521
Q ss_pred CcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHH
Q psy14676 235 TEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALL 313 (1827)
Q Consensus 235 ~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll 313 (1827)
.+|.+|..|+.+|+.++...++....++. .++|.|+..+++.++.+|..++.+++.+.
T Consensus 246 ---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 246 ---------------------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp ---------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred ---------------------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12689999999999998654432222222 58899999999999999999999999887
Q ss_pred hhhcccCCCCCCCCCCCCCCCChHhhHHhhh-HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC-cccccCch-hhHHH
Q psy14676 314 KGTRTFSPLTPSDPNQMDQEDSPLCLLSTQV-PSLVKALQCQLREKSIRTRQDCLALLRELVQTL-PGCLAPSL-PALIP 390 (1827)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl-~~~l~~~l-~~Llp 390 (1827)
... .......+ ..++|.+++.|++++++||..+...++.++... +......+ ..++|
T Consensus 305 ~~~--------------------~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 305 AGN--------------------RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TSC--------------------HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred cCC--------------------HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 311 11112122 257788888888999999998888888888753 22221111 24788
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh-------hhhhH
Q psy14676 391 DVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-------IGDMY 463 (1827)
Q Consensus 391 ~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~-------f~~~~ 463 (1827)
.+..++.+ ..|++|..|+.+|..++...+.. ..+|.
T Consensus 365 ~L~~ll~~-------------------------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~ 407 (450)
T 2jdq_A 365 PLCDLLTV-------------------------------------MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYC 407 (450)
T ss_dssp HHHHGGGS-------------------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHH
T ss_pred HHHHHhcC-------------------------------------CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHH
Confidence 88888731 25789999999999999755421 23455
Q ss_pred Hhh-----hhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 464 RLV-----SPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 464 ~~l-----~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
..+ ++.+.....+..+.||..|+..+..+.
T Consensus 408 ~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 408 ALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 555 566777677778899999998887776
No 20
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.66 E-value=1.2e-13 Score=181.65 Aligned_cols=392 Identities=13% Similarity=0.122 Sum_probs=275.6
Q ss_pred HHHHHhhhhccccchhhHHHHHHhhhcccC-CCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhh
Q psy14676 1002 WAQLFLHCECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIY 1080 (1827)
Q Consensus 1002 l~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~ 1080 (1827)
++.+.+-+.++.+.+|..|.++||.+.... .+.++|.+.+.++++++.+|..|+.++..++...++.
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~------------ 176 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL------------ 176 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG------------
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH------------
Confidence 455556668888999999999999987432 2457899999999999999999999999887776654
Q ss_pred hhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhh-------------cCC
Q psy14676 1081 SFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKA-------------ADI 1147 (1827)
Q Consensus 1081 ~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~-------------~D~ 1147 (1827)
+..+++.+...+.|+++.|+..|+.++.++... ..+...++..+++.++..|.. ...
T Consensus 177 --v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--------~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 177 --MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER--------SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp --GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--------HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred --HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--------ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 445777788889999999999999999887621 001112334444444444431 023
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh---h--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhh
Q psy14676 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRL---R--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILG 1222 (1827)
Q Consensus 1148 d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L---~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~ 1222 (1827)
++-.+-..+.+++.+...-. ...+.+..+|+.++... + +.....+|++++..+... ......++..|.
T Consensus 247 ~~~~q~~il~~L~~l~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~------~~l~~~a~~~L~ 319 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDD-DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE------SGLRVLAINILG 319 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHH
Confidence 66777778888877654311 12223334455554332 2 234588888888876421 122345677888
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhh
Q psy14676 1223 SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 1302 (1827)
Q Consensus 1223 ~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~l 1302 (1827)
.++...+..+|..++.+|+.++...+ +.+......+...+.|.|..++..++++|..++..
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~p-----~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-------------- 380 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTDH-----NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG-------------- 380 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHHH-----HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--------------
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhCH-----HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc--------------
Confidence 88887888999999999999988633 23333344556778899999999999998877642
Q ss_pred hhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh---hhhhhhHHHHHHhhhcCc-hhhHHHHHHHHHHHh
Q psy14676 1303 PQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV---GNLQQYVPFVLKEIENQP-KRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1303 geiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~---~~l~~~LP~Il~~i~~~~-~~q~~~l~aL~Eii~ 1378 (1827)
.....+++.++..+.+.+.++|..+..++|.++. ++...|++.+++.+...+ ..+.-++.++++++.
T Consensus 381 ---------~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 381 ---------NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp ---------SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 1235677888888888999999999999999886 467789999999887643 244557889999987
Q ss_pred hccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhc--------------cCCCcchHHHHHhhh--c
Q psy14676 1379 WQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL--------------IDPSNLLPRLQESLK--S 1441 (1827)
Q Consensus 1379 ~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~--------------~~p~~~lP~L~~~l~--~ 1441 (1827)
+. .+++. .+..++..+...+ ..+....+++.|||..+. +.|..+++.|..+++ .
T Consensus 452 ~~-------p~l~~~~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 522 (618)
T 1w63_A 452 NS-------VEMHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNM 522 (618)
T ss_dssp HS-------CSTHHHHHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTT
T ss_pred cC-------hhHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccC
Confidence 32 23444 5566777666532 244566689999999984 234457777777776 5
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy14676 1442 NSALMRTTVLTAVKFTIS 1459 (1827)
Q Consensus 1442 ~~~~~R~t~l~Alk~~~~ 1459 (1827)
+++.+|.++++|+-.+..
T Consensus 523 ~~~~vr~~~lta~~Kl~~ 540 (618)
T 1w63_A 523 STSVTRGYALTAIMKLST 540 (618)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 789999999999944443
No 21
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.65 E-value=1.3e-12 Score=183.05 Aligned_cols=376 Identities=11% Similarity=0.059 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCC----------------CCchhHHHHHHHhhhcCC-CCHHHHH
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGAL----------------LPSFHFVILTALLPQLSS-PRQAVRK 97 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~----------------l~~~~~~il~~ll~~L~~-~~~~VRk 97 (1827)
.+.++|.|++.+. .++..++.++.+|..+.+..... +..+.+.+++.+...|++ +++.+++
T Consensus 136 Wp~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~ 213 (1049)
T 3m1i_C 136 WPEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIV 213 (1049)
T ss_dssp CTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred chHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4668888888885 35667788888888888766531 111233455555555543 4566777
Q ss_pred HHHHHHHHHHHhhchhH----------------------------------------------HHHHHHHHHHhc-----
Q psy14676 98 RTIVALSHLVMSCNLQL----------------------------------------------YTKLIDFLLEGL----- 126 (1827)
Q Consensus 98 ~Ai~aL~~l~~~~~~~~----------------------------------------------~~~l~~~ll~~L----- 126 (1827)
.|+.|+..+...++... +..+++.++..+
T Consensus 214 ~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~ 293 (1049)
T 3m1i_C 214 ATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1049)
T ss_dssp HHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 77777766554433111 111111112211
Q ss_pred ------------cCCCCHHHHHHHHHHHHHHHHHhc------hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 127 ------------TTNKSTSTNRTYIQCFAAICRQAG------HRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 127 ------------~~~~~~~~r~~ai~~l~~la~~~~------~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
.++.+.+..+..+..+..++.... ..+.+++..++++++++...++++++..|+..+..+++
T Consensus 294 p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp CTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 011122334455555555544322 22577888899999988777788888777665555554
Q ss_pred h------CCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHH
Q psy14676 189 R------CPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRR 262 (1827)
Q Consensus 189 ~------~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRr 262 (1827)
. +...+.++++.+++.++..|.|+++ ++|. + ||+.|...++ ++|+.+|..|+
T Consensus 374 ~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed------~~~~------------~---dd~~e~~r~~-~~d~d~~~~~~ 431 (1049)
T 3m1i_C 374 DLFYEPLKKHIYEEICSQLRLVIIENMVRPEE------VLVV------------E---NDEGEIVREF-VKESDTIQLYK 431 (1049)
T ss_dssp HHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTT------CCEE------------E---CTTSCEEECS-SCCHHHHHHHH
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHhcCCCcc------eeee------------e---CCCCcchHhh-hccchHHHHHH
Confidence 1 2235678999999999999988421 1110 0 0000000111 22344689999
Q ss_pred HHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhH
Q psy14676 263 AAAKCLEAIIATRRDLIGDMYRLVSPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLL 340 (1827)
Q Consensus 263 aAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~--e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l 340 (1827)
++..+|..++...+. +.++.+.+.+.+.+. +.+|..|.+++.+++++.... ....
T Consensus 432 ~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~--------------------~~~~ 488 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTM--------------------SEDT 488 (1049)
T ss_dssp HHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSS--------------------CHHH
T ss_pred HHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc--------------------Cchh
Confidence 999999999866553 455666677766664 578999999999999776321 1111
Q ss_pred H-hhhHHHHHHHHHHh-----ccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCC
Q psy14676 341 S-TQVPSLVKALQCQL-----REKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMD 414 (1827)
Q Consensus 341 ~-~~lp~Iv~~l~~~L-----~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~ 414 (1827)
. ..++.+++.+.... +|+++.||..++.++++....+... .++++.+++.+...+.
T Consensus 489 e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~----------------- 550 (1049)
T 3m1i_C 489 EKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMH----------------- 550 (1049)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTT-----------------
T ss_pred hHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhc-----------------
Confidence 2 34788888877643 2567778866666777777655432 3578888888887762
Q ss_pred CcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhh--------hhHHhhhhhHHHhhcchhhhhHHHHH
Q psy14676 415 TEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG--------DMYRLVSPPLIARFKEREENVKSDIF 486 (1827)
Q Consensus 415 ~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~--------~~~~~l~~~L~~~~~d~~~~Vr~~a~ 486 (1827)
+.+.+||.+|+.++..+++..+..|. ||++.++..+...+......-+...+
T Consensus 551 --------------------~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~ 610 (1049)
T 3m1i_C 551 --------------------ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFY 610 (1049)
T ss_dssp --------------------SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 13567999999999999999887775 99999999888877664443444555
Q ss_pred HHHHHHHhh
Q psy14676 487 HAYMALLKG 495 (1827)
Q Consensus 487 ~~l~~L~~~ 495 (1827)
++++.++..
T Consensus 611 eai~~ii~~ 619 (1049)
T 3m1i_C 611 KACGIIISE 619 (1049)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 665666543
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.63 E-value=3.5e-13 Score=176.77 Aligned_cols=428 Identities=15% Similarity=0.159 Sum_probs=291.0
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhcccC-CCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.+.+-+.++++.+|..|..+||.+.... .+.++|.+.+++.++++.+|..|+.++..++...++.+.+
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~---------- 158 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED---------- 158 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH----------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc----------
Confidence 44555567788888988889998876432 2457888999999999999999999999887766554221
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCC-cchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYD-FAPFTSDIYQCTLVRLKAADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~-~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg 1160 (1827)
..+++.+..++.|+++.|+..|+.+++++... .... +.......+..++..+. +.++-.+-..+.+++
T Consensus 159 --~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~-------~~~~~~~~l~~~~~~~Ll~~l~--~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 159 --QGFLDSLRDLIADSNPMVVANAVAALSEISES-------HPNSNLLDLNPQNINKLLTALN--ECTEWGQIFILDCLS 227 (591)
T ss_dssp --HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS-------CCSCCSCCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh-------CCCccchhccHHHHHHHHHcCC--CCCchHHHHHHHHHH
Confidence 25889999999999999999999999997632 1111 23445566666777766 556666666666554
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCC--CccccchhhhhhHhhhhhhhcchhHHHHHHH
Q psy14676 1161 QIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTVKALTKIAASP--LRIDLRPILTDGIPILGSFLRKNQRALKLST 1236 (1827)
Q Consensus 1161 ~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~--~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~a 1236 (1827)
.+. ..-.+....+++.+...+++.+ .|.+|++++..+.... ...-+......+.+.|..++. .+..+|..+
T Consensus 228 ~l~----~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~a 302 (591)
T 2vgl_B 228 NYN----PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVA 302 (591)
T ss_dssp TSC----CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHH
T ss_pred HhC----CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHH
Confidence 432 1111245567777777776544 4999999999887421 111122233445555555544 678999999
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhh
Q psy14676 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVAD 1316 (1827)
Q Consensus 1237 l~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~ 1316 (1827)
+.+|..++...+..+.+. + ..+.... +.+..++..++++|..++.. +....
T Consensus 303 L~~l~~i~~~~p~~~~~~-~----~~~~~~~-~d~~~Ir~~al~~L~~l~~~-----------------------~nv~~ 353 (591)
T 2vgl_B 303 LRNINLIVQKRPEILKQE-I----KVFFVKY-NDPIYVKLEKLDIMIRLASQ-----------------------ANIAQ 353 (591)
T ss_dssp HHHHHHHHHHCCSTTTTC-T----TTTSCCT-TSCHHHHHHHHHHHHHTCCS-----------------------STHHH
T ss_pred HHHHHHHHHhChHHHHHH-H----Hhheecc-CChHHHHHHHHHHHHHHCCh-----------------------hhHHH
Confidence 999999999876554432 1 1112222 44589999999888765421 12356
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHhhhhhh---hhhhhHHHHHHhhhcCch-hhHHHHHHHHHHHhhccccccchhhhhc
Q psy14676 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEIENQPK-RQYLLLHSLKEIISWQSTSTSGVAQLQQ 1392 (1827)
Q Consensus 1317 l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~---~l~~~LP~Il~~i~~~~~-~q~~~l~aL~Eii~~~~~s~~g~~~L~~ 1392 (1827)
+++.+...+.+.+.++|..++.++|.++.. ....|++.+++.+.+.+. ...-++.++++++.+.. .++.
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p-------~~~~ 426 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP-------NKYE 426 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC-------SSCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc-------chHH
Confidence 788888888999999999999999998754 345699999998876432 23334678888886321 1222
Q ss_pred hHHHHHHHHhhhhc-CCchhHHHHHHHHHHHhhccC--CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhH
Q psy14676 1393 FVPAIWAQLFLHCE-CQEEGTRNVVAECLGKLTLID--PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDF 1469 (1827)
Q Consensus 1393 ~~~~i~~~L~~~~~-~~~e~vR~~aAecLGkL~~~~--p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l 1469 (1827)
.+...|.+.++ ..+..+|..++.+||..+... +..++..+.+.+...++.+|..+++|+-.+....++..
T Consensus 427 ---~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~---- 499 (591)
T 2vgl_B 427 ---SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET---- 499 (591)
T ss_dssp ---TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT----
T ss_pred ---HHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH----
Confidence 12333444443 345668999999999998644 44666666666667899999999999988886543211
Q ss_pred HHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh-hcC-CchHHHHHHHHHhhhhh
Q psy14676 1470 RFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL-LED-KNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1470 ~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~-l~D-~~~~Vr~~a~~~Lg~L~ 1523 (1827)
...+..++.. ..| .+++||..|...++-+.
T Consensus 500 ------------------------~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 500 ------------------------QELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp ------------------------HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred ------------------------HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence 1233444544 456 78899999999887774
No 23
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.63 E-value=8.3e-13 Score=181.11 Aligned_cols=497 Identities=11% Similarity=0.103 Sum_probs=300.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch-hHHHHHHH-----HHH
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL-QLYTKLID-----FLL 123 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~-~~~~~l~~-----~ll 123 (1827)
.++.++..+|.+|+..+.-....+. ....+++.++..|.+ +.+|..|+.||..++..-.+ +...+++. ..+
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~~~~i-~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWININLI-VNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCHHHH-HCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCHHhh-hcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 4778889999999888773222110 235789999988876 78999999999999876432 21122222 222
Q ss_pred HhccC-CCCHHHHHHHHHHHHHHHHHh------c--------hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 124 EGLTT-NKSTSTNRTYIQCFAAICRQA------G--------HRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 124 ~~L~~-~~~~~~r~~ai~~l~~la~~~------~--------~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
..+.. +.+.+..+..+..+.+++... + ....+++..++|+++.++..+++++-..++..+-.++.
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV 361 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 33332 456677777777776665442 1 12347888999999999988888876655554444443
Q ss_pred h---------CCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhh
Q psy14676 189 R---------CPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWK 259 (1827)
Q Consensus 189 ~---------~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWk 259 (1827)
. .+..+.|+++.+++.+.+-|+|++++ +| ++ |+|+ ||++.--.
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~------~~------------~~---~~d~-------ed~~~F~e 413 (980)
T 3ibv_A 362 SLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQ------EW------------DD---DPDS-------EEEAEFQE 413 (980)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTC------CC------------CC---CSSS-------STHHHHHH
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHccCCCcc------cc------------cc---ccch-------hHHHHHHH
Confidence 2 13346789999999999999997532 11 00 0000 11111123
Q ss_pred HHHHHHHHHHHHHHHcCCchhh-hHHhhhHHHHhhcC---CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCC
Q psy14676 260 VRRAAAKCLEAIIATRRDLIGD-MYRLVSPPLIARFK---EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDS 335 (1827)
Q Consensus 260 VRraAak~L~~l~~~~~~~l~~-~~~~v~p~L~~~l~---e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~ 335 (1827)
.|+..+..++.++.-.|+.+.+ .|..+.+.+.+.+. ..+|..+++++.+++++.+....... .
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~---------~---- 480 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDA---------F---- 480 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGG---------T----
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccc---------c----
Confidence 7777775556665555554333 44477777777663 46799999999999988764321000 0
Q ss_pred hHhhHHhhhHHHHHHHHHHhc-----cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHH--HhhhhhcccCCCCC
Q psy14676 336 PLCLLSTQVPSLVKALQCQLR-----EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTS--VAEWDEEEGLGGEG 408 (1827)
Q Consensus 336 ~~~~l~~~lp~Iv~~l~~~L~-----d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~--~L~~~~~~~~~~~~ 408 (1827)
. ......+|.+++.+.+.++ +++++||..++.+++.....+... .++++.+++.+.. .+.
T Consensus 481 ~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~----------- 547 (980)
T 3ibv_A 481 F-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEYFVGPRGIH----------- 547 (980)
T ss_dssp B-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTT-----------
T ss_pred c-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhcccccc-----------
Confidence 0 0012356777777777766 899999999999999988887532 3455555555444 331
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchh----------
Q psy14676 409 GGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE---------- 478 (1827)
Q Consensus 409 ~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~---------- 478 (1827)
+.+-+||.+|..++..|++.++..+.||++.++..+...+.-..
T Consensus 548 --------------------------~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~ 601 (980)
T 3ibv_A 548 --------------------------NTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPV 601 (980)
T ss_dssp --------------------------CCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSS
T ss_pred --------------------------CCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccc
Confidence 12235999999999999999998888988887777766554211
Q ss_pred -----------hhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhh-----h
Q psy14676 479 -----------ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIR-----T 542 (1827)
Q Consensus 479 -----------~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~-----~ 542 (1827)
.+-+.-.+++++-|+...+. |. + .....++..+.++++++...+...... .
T Consensus 602 ~~~~~~~~~~~~~~ql~L~eaig~li~~~~~--~~----------e-~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~ 668 (980)
T 3ibv_A 602 PTLNSSIRNSDFNSQLYLFETVGVLISSGNL--TP----------E-EQALYCDSLINALIGKANAALSSDLSALENIIS 668 (980)
T ss_dssp CCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC--CH----------H-HHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHH
T ss_pred cchhhhcccCCchHHHHHHHHHHHHHhCCCC--CH----------H-HHHHHHHHHHHHHHHHHHHHHhhcccCccHHHH
Confidence 01233355556666654431 00 0 011234555566666666655321100 1
Q ss_pred HHhH---HHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhh--cchhhHHHHHHHhhhhHHHH
Q psy14676 543 RQDC---LALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE--DKNGEVQNLAVKCLGPLFKA 617 (1827)
Q Consensus 543 ~~~~---l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~--D~~~eV~~~A~~~lg~l~~~ 617 (1827)
.... ++.+.+.+.+... +.. . . ...-.++++.++..++ ..+.+||..+.+++.+++..
T Consensus 669 i~~~i~al~~lakgf~~~~~--~~~--p-~------------~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 669 VYCSLMAIGNFAKGFPARGS--EEV--A-W------------LASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp HHHHHHHHHHHHHTSCSCC---CCC--S-H------------HHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccCCcccC--CCC--c-H------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 1112 2333333322200 000 0 0 1234567777777776 45789999999999999988
Q ss_pred hhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCc
Q psy14676 618 LTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA 670 (1827)
Q Consensus 618 ~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~ 670 (1827)
++. ++.|++|.+++.+..... ..--..-|-++++++..|+..
T Consensus 732 lg~--------~~~p~lp~~i~~ll~~~~---~~e~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 732 VGP--------DMLPKVPQLISILLNSID---MNELVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp THH--------HHTTTHHHHHHHHHHHCC---TTTHHHHHHHHHHHHHHTTTT
T ss_pred ccH--------hHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 885 456778777777663222 112233567888888888764
No 24
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.61 E-value=3.4e-11 Score=168.56 Aligned_cols=501 Identities=13% Similarity=0.084 Sum_probs=291.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCC----C-----CHHHHHHHHHHHHHHHHhhchhHH
Q psy14676 46 IEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSS----P-----RQAVRKRTIVALSHLVMSCNLQLY 115 (1827)
Q Consensus 46 l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~----~-----~~~VRk~Ai~aL~~l~~~~~~~~~ 115 (1827)
+.++.+..+|.-|...|-..+.+.-..+.+ ....+...+++.+.+ + ++.||.+.+.+++.++..--++.+
T Consensus 57 L~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W 136 (1049)
T 3m1i_C 57 LQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW 136 (1049)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc
Confidence 334458899999999998877765444544 345666677776653 1 478999999999999988655667
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc----------------hhhHHhHHHHHHHHHhhccc-CchHHHHH
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG----------------HRFAEHIERVMPLILKYSRE-EDDELREF 178 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~----------------~~~~p~l~~i~p~l~~~~~~-~~delRe~ 178 (1827)
..+++.+++.+. .+...+..++.++..+++... ..+..+++.+++++.++++. .+.+++..
T Consensus 137 p~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~ 214 (1049)
T 3m1i_C 137 PEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVA 214 (1049)
T ss_dssp TTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 888888888875 345567788888888886544 34677788888888887754 35788999
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchh
Q psy14676 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSW 258 (1827)
Q Consensus 179 al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sW 258 (1827)
++.++..|+...|-.. .+-+.+++.+++.+..+ .
T Consensus 215 aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l~~---------------------------------------------~ 248 (1049)
T 3m1i_C 215 TLESLLRYLHWIPYRY-IYETNILELLSTKFMTS---------------------------------------------P 248 (1049)
T ss_dssp HHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHHHS---------------------------------------------H
T ss_pred HHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhCCC---------------------------------------------H
Confidence 9999888877655321 01133566655322100 1
Q ss_pred hHHHHHHHHHHHHHHHc-CCc---hhh----hHHhhhHHHHh-----------hc---CCCCHhHHHHHHHHHHHHHhhh
Q psy14676 259 KVRRAAAKCLEAIIATR-RDL---IGD----MYRLVSPPLIA-----------RF---KEREENVKSDIFHAYMALLKGT 316 (1827)
Q Consensus 259 kVRraAak~L~~l~~~~-~~~---l~~----~~~~v~p~L~~-----------~l---~e~ee~VR~aa~~al~~ll~~~ 316 (1827)
.+|.+|.+||..++... ++. +.. ++..++..+.. .+ .+.++++.......+..++...
T Consensus 249 ~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~ 328 (1049)
T 3m1i_C 249 DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARN 328 (1049)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 58889999999998763 221 122 22223332222 11 2345556666666665555432
Q ss_pred cccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC---cc---cccCchhhHHH
Q psy14676 317 RTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTL---PG---CLAPSLPALIP 390 (1827)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl---~~---~l~~~l~~Llp 390 (1827)
..... . . ....+.+..+++.+++....++..++..|+.+...+++.+ |. .+.++++.|++
T Consensus 329 ~~~~~----------~--~--~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~ 394 (1049)
T 3m1i_C 329 RALLE----------S--D--ESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRL 394 (1049)
T ss_dssp HHHHH----------S--C--GGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHH
T ss_pred HHHHc----------C--C--hhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 11100 0 0 1134567788888888877788899999999998888743 22 33466677777
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCcccC-CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhh
Q psy14676 391 DVTSVAEWDEEEGLGGEGGGEGMDTEEED-GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPP 469 (1827)
Q Consensus 391 ~i~~~L~~~~~~~~~~~~~~~~~~~e~ed-~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~ 469 (1827)
.+..-+.. ++ |++. ++|++|.--++.+| +..|..|.++..+|..++...+....++ +.+.
T Consensus 395 ~ll~~m~~--------~e-------d~~~~~dd~~e~~r~~~~d-~d~~~~~~~~~~~L~~l~~~~~~~~l~~---v~~~ 455 (1049)
T 3m1i_C 395 VIIENMVR--------PE-------EVLVVENDEGEIVREFVKE-SDTIQLYKSEREVLVYLTHLNVIDTEEI---MISK 455 (1049)
T ss_dssp HHHHTCCC--------CT-------TCCEEECTTSCEEECSSCC-HHHHHHHHHHHHHHHHHHHHCHHHHHHH---HHHH
T ss_pred HHHHhcCC--------Cc-------ceeeeeCCCCcchHhhhcc-chHHHHHHHHHHHHHHHHccCHHHHHHH---HHHH
Confidence 66665421 00 0000 01111111122222 2258889899999999987666433322 2333
Q ss_pred HHHhhc--chhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHH
Q psy14676 470 LIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCL 547 (1827)
Q Consensus 470 L~~~~~--d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l 547 (1827)
+-+.+. ...|+.|++++-.++.+....+. ...+...+.+++.+....
T Consensus 456 l~~~l~~~~~~W~~~eaal~algsia~~~~~-------------------~~e~~~l~~v~~~l~~l~------------ 504 (1049)
T 3m1i_C 456 LARQIDGSEWSWHNINTLSWAIGSISGTMSE-------------------DTEKRFVVTVIKDLLDLT------------ 504 (1049)
T ss_dssp HHHHHTSSSCCHHHHHHHHHHHHHTTTSSCH-------------------HHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHhcccCc-------------------hhhHHHHHHHHHHHHHHH------------
Confidence 333332 34678888888877766533220 000111233333332211
Q ss_pred HHHHHhhc--CCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCc
Q psy14676 548 ALLRELMT--SSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASP 625 (1827)
Q Consensus 548 ~~l~~~~~--d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~ 625 (1827)
+.+. ++.|-+|..+...+.+.- ..+...+.+...+++.++.++.|.+.+|+..|..++..+++.++..-...
T Consensus 505 ----~~~~~~~~~~~v~~~~~~~lgry~--~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~ 578 (1049)
T 3m1i_C 505 ----VKKRGKDNKAVVASDIMYVVGQYP--RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQ 578 (1049)
T ss_dssp ----TSSCSHHHHHHHHHHHHHHHHHCH--HHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSC
T ss_pred ----hhhccccchHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0000 111111111111111000 01112345678889999999999999999999999999998876532111
Q ss_pred ccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14676 626 LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLL 664 (1827)
Q Consensus 626 ~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~ 664 (1827)
-.-++.||++.++..+...+.+-+..-....+.++..++
T Consensus 579 ~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 579 QPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp CTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 112345888888888887777643333334444444544
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.61 E-value=1.3e-13 Score=174.52 Aligned_cols=404 Identities=13% Similarity=0.093 Sum_probs=273.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHh-hch---hHHH--HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMS-CNL---QLYT--KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~-~~~---~~~~--~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
++.+++.|+++++.+|..|+.+|..++.. .++ ..+. ..++.+++.|..+.++.+|..++.+++.++...++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77788888899999999999999998752 121 1222 46777888887665789999999999999975443332
Q ss_pred HhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch--HHHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 155 EHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI--QSITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 155 p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l--~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
..+ ..++|.+++.++++++++|+.|..++..+....+. .+..+ ..+++.+++.+..
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~-------------------- 160 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM-CRDYVLDCNILPPLLQLFSK-------------------- 160 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTTS--------------------
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH-HHHHHHHCCCHHHHHHHhcC--------------------
Confidence 222 46899999999989999999999999888764432 11111 2456777766531
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHc-CCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-RDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~-~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
+.+|.+|+.|+.+|+.++... +..-..+...++|.|+..+++.++.+|..++.+++
T Consensus 161 -----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 161 -----------------------QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALS 217 (450)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 113689999999999999664 43333455788999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch-hhHH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL-PALI 389 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l-~~Ll 389 (1827)
.+..... + ....+. -..+++.+++.|+++++.+|..++..++.++...+......+ ..++
T Consensus 218 ~l~~~~~----------------~-~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 218 YLSDGPN----------------D-KIQAVI--DAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp HHTSSSH----------------H-HHHHHH--HTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred HHHCCCc----------------H-HHHHHH--HcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 8873210 0 011111 123567778888899999999999999888764432111111 2477
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhhhh
Q psy14676 390 PDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSP 468 (1827)
Q Consensus 390 p~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~ 468 (1827)
|.+...+.+ .+|.+|..|+.+|+.++..........+ ..++|
T Consensus 279 ~~L~~ll~~-------------------------------------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 279 QSLLHLLSS-------------------------------------PKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp HHHHHHTTC-------------------------------------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHcC-------------------------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 888888731 3588999999999999864333333333 36788
Q ss_pred hHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHH
Q psy14676 469 PLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLA 548 (1827)
Q Consensus 469 ~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~ 548 (1827)
.++..+.+..+.||..|..++..+..... + ..++.+.
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~---~------------------------~~~~~l~---------------- 358 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGS---A------------------------EQIKYLV---------------- 358 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCC---H------------------------HHHHHHH----------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCC---H------------------------HHHHHHH----------------
Confidence 88888888889999999988888875321 0 0000000
Q ss_pred HHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccc
Q psy14676 549 LLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRI 628 (1827)
Q Consensus 549 ~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~ 628 (1827)
...+++.|..++.+.+.+|+..|..+|+.++.......... ..
T Consensus 359 ------------------------------------~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~ 401 (450)
T 2jdq_A 359 ------------------------------------ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GT 401 (450)
T ss_dssp ------------------------------------HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS-CS
T ss_pred ------------------------------------HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc-cc
Confidence 11244555666666667777777777777765443211000 00
Q ss_pred cccccccch-----hhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14676 629 DLRPILTDG-----IPILGSFLRKNQRALKLSTLLLLDTLL 664 (1827)
Q Consensus 629 dl~~~l~~~-----i~~l~~~l~~~~~~lk~~~l~~l~~l~ 664 (1827)
...+|...+ ++.|..++..++..++..++.+++.++
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 112333333 577788888888889999998888874
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.60 E-value=1.8e-13 Score=184.88 Aligned_cols=528 Identities=11% Similarity=0.047 Sum_probs=321.9
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhccc-CCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLI-DPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~-~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.++..|.+.++.+|..+.+.++..... .....+|.|.+.+++++..+|+.++..|+.++.+..... ...
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~---------~i~ 188 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---------AIM 188 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH---------HHT
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH---------HHH
Confidence 3444555667777887777777644221 125579999999999899999999999997766432110 011
Q ss_pred hhhhhhHHHHHhhcC-CchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGD-NFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQEVKERAISC 1158 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D-~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~eVre~Ai~a 1158 (1827)
..+.+++.++..+.+ .++.++..|+.++..+...- +....+ ...++.++..+. +.+..+|..|+.+
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~---------~~~~~i~~~g~I~~Lv~lL~--~~~~~v~~~A~~a 257 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR---------EGLLAIFKSGGIPALVNMLG--SPVDSVLFHAITT 257 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH---------HHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHH
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc---------hhHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHH
Confidence 123578888888864 47899999999988876321 001111 135566666666 5678999999999
Q ss_pred HHHHHHHhhhhhhhh-hhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccc-h-hhhhhHhhhhhhhcchh-HHH
Q psy14676 1159 MGQIICNLGDYLKSE-LPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLR-P-ILTDGIPILGSFLRKNQ-RAL 1232 (1827)
Q Consensus 1159 lg~l~~~~g~~l~~~-l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~-p-~~~~~l~~L~~~Lrk~~-r~l 1232 (1827)
|+.+.......-... -..++|.|++.++++.. |..++.++..++.... +.. . .-...++.|..+++..+ ...
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~--e~~~~i~~~~~i~~Lv~lL~~~~~~~~ 335 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ--ESKLIILASGGPQALVNIMRTYTYEKL 335 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH--HHHHHHHTTTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh--HHHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 999987643322222 24578889999876543 7777888887764210 000 1 11356777888888654 446
Q ss_pred HHHHHHHHHHHHHhCCCCcChHh-HHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCC
Q psy14676 1233 KLSTLLLLDTLLVNYPSAISTEM-LNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDL 1311 (1827)
Q Consensus 1233 R~~al~aL~~L~~~~~~~l~~~~-~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~ 1311 (1827)
+..+..+|..+..+.. ..... -..+++.|..++.+.+..++..++.+|..++...+..
T Consensus 336 ~~~a~~aL~~Ls~~~~--~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~------------------- 394 (780)
T 2z6g_A 336 LWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------------------- 394 (780)
T ss_dssp HHHHHHHHHHHHTSTT--HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-------------------
T ss_pred HHHHHHHHHHhhcChH--HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-------------------
Confidence 6677888888775321 11111 1246788899999999999999999999888644321
Q ss_pred CchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhh--------hhhHHHHHHhhhc-C-c-hhhHHHHHHHHHHHhhc
Q psy14676 1312 TSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNL--------QQYVPFVLKEIEN-Q-P-KRQYLLLHSLKEIISWQ 1380 (1827)
Q Consensus 1312 ~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l--------~~~LP~Il~~i~~-~-~-~~q~~~l~aL~Eii~~~ 1380 (1827)
.....+++.+++.+.+++.++|..|+.+|++++.++- ...+|.+++.+.. + . ..+...+++|+.+....
T Consensus 395 ~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 395 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 1125688999999999999999999999999876431 2356778877755 2 2 57778888888774311
Q ss_pred cccccchhhhhc--hHHHHHHHHhhhhcCCc-hhHHHHHHHHHHHhhccCC-------CcchHHHHHhhhcCCHHHHHHH
Q psy14676 1381 STSTSGVAQLQQ--FVPAIWAQLFLHCECQE-EGTRNVVAECLGKLTLIDP-------SNLLPRLQESLKSNSALMRTTV 1450 (1827)
Q Consensus 1381 ~~s~~g~~~L~~--~~~~i~~~L~~~~~~~~-e~vR~~aAecLGkL~~~~p-------~~~lP~L~~~l~~~~~~~R~t~ 1450 (1827)
.. ....+. .....++.|++.+.+.. ..+|..++.+|++|+.... ..++|.|.+++.+.++.+|..+
T Consensus 475 ~~----~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 550 (780)
T 2z6g_A 475 QD----AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550 (780)
T ss_dssp TT----HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred ch----HHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHH
Confidence 00 000110 01123556666665544 4799999999999996321 3578999999877655444322
Q ss_pred HHHHHHH-hhhcCCCCChhHHHHHhhhhhhhhhhcccccChh-HHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhh
Q psy14676 1451 LTAVKFT-ISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDD-SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKE 1528 (1827)
Q Consensus 1451 l~Alk~~-~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~-~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~ 1528 (1827)
..++... +.+ ...++.++..+...|......+. .... ....+++.|+.++.+++++|+.+|+.+|+.|+..-..
T Consensus 551 a~al~nq~~~~--~~~~~~v~~~a~~aL~~La~~~~--~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 626 (780)
T 2z6g_A 551 SMGGTQQQFVE--GVRMEEIVEACTGALHILARDIH--NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 626 (780)
T ss_dssp C------CCST--TCCHHHHHHHHHHHHHHHTTSHH--HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHH
T ss_pred hhccccchhhc--ccChHHHHHHHHHHHHHHhcChh--hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 2222110 000 00011111111111111000000 0000 1134579999999999999999999999999743111
Q ss_pred h-hHH--HHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhccc-CCccccc
Q psy14676 1529 F-QVE--TIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTT-HPPAVFH 1597 (1827)
Q Consensus 1529 ~-~~~--~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~-llp~l~~ 1597 (1827)
. .+. ..+..+...+.+.+ .+||+.|..+|...++++|..+ +..+.. +++.+|.
T Consensus 627 ~~~i~~~g~i~~L~~Ll~~~~--------~~Vr~~A~~aL~~l~~~~~~~~--------~~~l~~~ll~~l~~ 683 (780)
T 2z6g_A 627 AEAIEAEGATAPLTELLHSRN--------EGVATYAAAVLFRMSEDKPQDY--------KKRLSVELTSSLFR 683 (780)
T ss_dssp HHHHHHTTCHHHHHHGGGCSC--------HHHHHHHHHHHHHHHTTSCTTH--------HHHHHHHHHHHC--
T ss_pred HHHHHHCCCHHHHHHHHcCCC--------HHHHHHHHHHHHHHHcCChHhh--------hccccHHHHHHHHh
Confidence 1 111 12334444333333 3999999999999999999887 433333 5666663
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.57 E-value=8.6e-14 Score=180.43 Aligned_cols=388 Identities=14% Similarity=0.119 Sum_probs=269.1
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
++..++|..+..+|+.+.+.-+.+. ....+...++|.|++.+.++.++.+|..|+.+|+.++......... .....+
T Consensus 98 s~~~~~~~~A~~~L~~ll~~~~~~~--~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 175 (530)
T 1wa5_B 98 SDDMQEQLSATVKFRQILSREHRPP--IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175 (530)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCS--HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 4456688888888888876542221 2223345688999999976558999999999999998643211100 112457
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---hHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-chhhHHh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL---QLY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA-GHRFAEH 156 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~-~~~~~p~ 156 (1827)
+.++..|.++++.||..|+.+|++++...+. ..+ ...++.++..|.. .+..+++.++.+|+.+++.. +..-..+
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 254 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSV 254 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 7888888889999999999999999975322 111 2356777777765 56889999999999999765 4333446
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH-HHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCC
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ-SITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~-~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~ 235 (1827)
...++|.++..+.++++++|..|+.++..+....++.....+. .+++.++..+..
T Consensus 255 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~------------------------ 310 (530)
T 1wa5_B 255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH------------------------ 310 (530)
T ss_dssp HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC------------------------
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC------------------------
Confidence 6789999999999889999999999888887644332222222 456777766521
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 236 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 236 ~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
.+|.+|..|+.+|+.++...+.....++ ..++|.|+..+++.++.+|..|+.+++.+..
T Consensus 311 --------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 311 --------------------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp --------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred --------------------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1378999999999998865443322233 3688999999999999999999999998873
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhHHhhh-HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc--cccCch--hhHH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLLSTQV-PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG--CLAPSL--PALI 389 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~--~l~~~l--~~Ll 389 (1827)
.. .......+ ..++|.+++.|+++++++|..+...++.++..... ...+++ ..++
T Consensus 371 ~~--------------------~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l 430 (530)
T 1wa5_B 371 GN--------------------TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430 (530)
T ss_dssp SC--------------------HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCH
T ss_pred CC--------------------HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCH
Confidence 11 11111111 24567777778889999999888899988876432 111111 2377
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh-------hhhh
Q psy14676 390 PDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-------IGDM 462 (1827)
Q Consensus 390 p~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~-------f~~~ 462 (1827)
|.+..++.+ ..+.+|..++.+|..++...... ..+|
T Consensus 431 ~~L~~ll~~-------------------------------------~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~ 473 (530)
T 1wa5_B 431 KPLCDLLEI-------------------------------------ADNRIIEVTLDALENILKMGEADKEARGLNINEN 473 (530)
T ss_dssp HHHHHHTTT-------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHhC-------------------------------------CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHH
Confidence 788888731 24679999999999999765421 1233
Q ss_pred HHh-----hhhhHHHhhcchhhhhHHHHHHHHHHHHh
Q psy14676 463 YRL-----VSPPLIARFKEREENVKSDIFHAYMALLK 494 (1827)
Q Consensus 463 ~~~-----l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~ 494 (1827)
... .++.+.....+..+.|+..|...+..+..
T Consensus 474 ~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 474 ADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 322 25666776777788999999988777653
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.55 E-value=1.3e-12 Score=176.52 Aligned_cols=456 Identities=12% Similarity=0.098 Sum_probs=302.4
Q ss_pred HHHHHhhhhccccchhhHHHHHHhhhcccC--------CCCchHHHHHHhccC-ChhhHHHHHHHHHHHHHhcccccccc
Q psy14676 1002 WAQLFLHCECQEEGTRNVVAECLGKLTLID--------PSNLLPRLQESLKSN-SALMRTTHQSNQTFNVIIQRNDIHNH 1072 (1827)
Q Consensus 1002 l~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~--------~~~llP~L~~~L~s~-~~~~R~~a~~~L~~l~~~~~~~l~~~ 1072 (1827)
++.|...+.+++..+|..|+.+|+.++... ...++|.|.+.|++. +...|..++.+|..+...... +..
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~ 229 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLA 229 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHH
Confidence 334444445677889999999999887542 235789999999754 788999999999976543211 000
Q ss_pred ccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHH
Q psy14676 1073 NEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQE 1150 (1827)
Q Consensus 1073 ~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~e 1150 (1827)
+. -...+|.++..+++..+.++..|+.++..+...- ...+..+ ...++.++..+. +.+.+
T Consensus 230 ------i~--~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--------~~~~~~v~~~g~v~~Lv~lL~--~~~~~ 291 (780)
T 2z6g_A 230 ------IF--KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ--------EGAKMAVRLAGGLQKMVALLN--KTNVK 291 (780)
T ss_dssp ------HH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS--------TTHHHHHHHTTHHHHHHHGGG--CCCHH
T ss_pred ------HH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--------hhhHHHHHHcCCHHHHHHHHh--cCCHH
Confidence 00 1257899999999999999999999999998641 1222222 246667777776 56789
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-hhhhhHHHHHHhhhhhh---hHHHHHHHHHHHhcCCCccccchhh-hhhHhhhhhhh
Q psy14676 1151 VKERAISCMGQIICNLGDYLKS-ELPVCLPILLDRLRNEI---TRLTTVKALTKIAASPLRIDLRPIL-TDGIPILGSFL 1225 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~l~~-~l~~lL~~Ll~~L~~e~---tR~~av~al~~ia~~~~~~dl~p~~-~~~l~~L~~~L 1225 (1827)
+++.|+.++..+.....+.-.. .-...++.|++.+++.. .+..++.++..++.... .....+ ..+++.|..++
T Consensus 292 v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~--~~~~i~~~g~l~~Ll~lL 369 (780)
T 2z6g_A 292 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHL 369 (780)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT--HHHHHHHTTHHHHHGGGT
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH--HHHHHHHhchHHHHHHHH
Confidence 9999999999766321111000 11245777777776543 35677888888875421 111122 34678899999
Q ss_pred cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhc
Q psy14676 1226 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQI 1305 (1827)
Q Consensus 1226 rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgei 1305 (1827)
++.+..++..++.+|..++....... ....+++.|..++.+.|..++..++.+|+.++...+.. ... +
T Consensus 370 ~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~------~~~---i 437 (780)
T 2z6g_A 370 TDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN------KMM---V 437 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH------HHH---H
T ss_pred cCCchHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH------HHH---H
Confidence 88888899999999999987654321 23568888889999999999999999999887632210 000 0
Q ss_pred ccccCCCchhhHHHHHHHhcCC--CCHhHHHHHHHHHhhhhhhhh-----------hhhHHHHHHhhhcCc--hhhHHHH
Q psy14676 1306 GRHTDLTSVADLKQVILNAFTP--TSEEVKSAASYTLGSIAVGNL-----------QQYVPFVLKEIENQP--KRQYLLL 1370 (1827)
Q Consensus 1306 G~~~~~~~~~~l~~~~l~~~~~--~s~eVr~aAa~aLG~i~~~~l-----------~~~LP~Il~~i~~~~--~~q~~~l 1370 (1827)
+ ....++.+++.+.+ ..++||..|+.+||+++..+. ...+|.+++.+.... ..+....
T Consensus 438 ---~----~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~ 510 (780)
T 2z6g_A 438 ---C----QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510 (780)
T ss_dssp ---H----TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred ---H----HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Confidence 0 01245556666654 235899999999999865321 235788888886532 4566677
Q ss_pred HHHHHHHhhccccccchhhhh--chHHHHHHHHhhh----------------h--cCCchhHHHHHHHHHHHhhc-----
Q psy14676 1371 HSLKEIISWQSTSTSGVAQLQ--QFVPAIWAQLFLH----------------C--ECQEEGTRNVVAECLGKLTL----- 1425 (1827)
Q Consensus 1371 ~aL~Eii~~~~~s~~g~~~L~--~~~~~i~~~L~~~----------------~--~~~~e~vR~~aAecLGkL~~----- 1425 (1827)
++|+.+...... ...+. ..++.|...|-.. + ....+.++..++.||+.|+.
T Consensus 511 ~aL~nLa~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~ 586 (780)
T 2z6g_A 511 GLIRNLALCPAN----HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNR 586 (780)
T ss_dssp HHHHHHHSSHHH----HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHhcCHHH----HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhH
Confidence 888877531100 01111 1233333333220 0 01235688899999999984
Q ss_pred --cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh
Q psy14676 1426 --IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL 1503 (1827)
Q Consensus 1426 --~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~ 1503 (1827)
+.....+|.|.+++.++++.+|..++.+|..+..+ +..+ ..+ .....++.|..+
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~------~~~~--------~~i----------~~~g~i~~L~~L 642 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------KEAA--------EAI----------EAEGATAPLTEL 642 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS------HHHH--------HHH----------HHTTCHHHHHHG
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC------HHHH--------HHH----------HHCCCHHHHHHH
Confidence 22356889999999999999999999999988643 2221 000 011256889999
Q ss_pred hcCCchHHHHHHHHHhhhhhhhh
Q psy14676 1504 LEDKNGEVQNLAVKCLGPLVNKV 1526 (1827)
Q Consensus 1504 l~D~~~~Vr~~a~~~Lg~L~~~l 1526 (1827)
++++++.||.+|+.+|..+...-
T Consensus 643 l~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 643 LHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998643
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.53 E-value=1.2e-12 Score=169.47 Aligned_cols=389 Identities=12% Similarity=0.114 Sum_probs=269.4
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
++..++|..+..+|+.+.+.-+.+. ....+...++|.|++.+.++.++.+|..|+.+|+.++..-...... .....+
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~--~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCC--HHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCch--HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 4566788888889988877654221 2233456689999999987645999999999999998742221111 112478
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---hHHH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL---QLYT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI 157 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l 157 (1827)
+.++..|.++++.||..|+.+|++++...+. .... ..++.++..|.++.+..+++.++.+|+.+++..+..-....
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 8899999999999999999999999875432 1111 25678888886667789999999999999987654444567
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCc
Q psy14676 158 ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTE 236 (1827)
Q Consensus 158 ~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~ 236 (1827)
..++|.+.+.+..++++++..|+.++..+....+......+ ..+++.+++.+..
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~------------------------- 297 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH------------------------- 297 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-------------------------
Confidence 88999999999989999999888888776643222111111 2356677766532
Q ss_pred ccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCC-CHhHHHHHHHHHHHHHh
Q psy14676 237 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKER-EENVKSDIFHAYMALLK 314 (1827)
Q Consensus 237 ~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~-ee~VR~aa~~al~~ll~ 314 (1827)
.+|.||..|+.+|+.++...+.....++ ..++|.|+..+++. ++.+|..|+.+++.+..
T Consensus 298 -------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 298 -------------------PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred -------------------CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 1257999999999999865443332333 35788999999888 99999999999999873
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch--hhHHHHH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL--PALIPDV 392 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l--~~Llp~i 392 (1827)
... .....+. -..++|.+++.|.+.++++|..+...++.++.........++ ..+++.+
T Consensus 359 ~~~-----------------~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 359 GNK-----------------DQIQAVI--NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp SCH-----------------HHHHHHH--HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred CCH-----------------HHHHHHH--HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 110 0111111 124567778888888999999988899998877422222222 3567778
Q ss_pred HHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhh----------hhhhh
Q psy14676 393 TSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRD----------LIGDM 462 (1827)
Q Consensus 393 ~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~----------~f~~~ 462 (1827)
..++.. ..+.++..++.+|..++..... .+...
T Consensus 420 ~~lL~~-------------------------------------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~ 462 (528)
T 4b8j_A 420 CDLLIC-------------------------------------PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQM 462 (528)
T ss_dssp HHGGGC-------------------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHH
T ss_pred HHHHcC-------------------------------------CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHH
Confidence 888731 2467999999999999875542 12222
Q ss_pred HHhh--hhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 463 YRLV--SPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 463 ~~~l--~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
+... +..+.....+..+.|+..|...+..+.
T Consensus 463 i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 463 IDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 2222 455556666667888888887776664
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.52 E-value=2.7e-12 Score=168.22 Aligned_cols=462 Identities=13% Similarity=0.092 Sum_probs=311.4
Q ss_pred hhhccccchhhHHHHHHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhh
Q psy14676 1008 HCECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYY 1084 (1827)
Q Consensus 1008 ~l~~~e~~vR~~a~e~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~ 1084 (1827)
.+.+++..+|+++.-.+..++...++. +++.+.+-++++++..|..|+.+++.+. ... ..+
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~-------------~~~ 120 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDK-------------ITE 120 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGG-------------GHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHH-------------HHH
Confidence 356777888888777777666654443 5677778889999999999888777442 111 155
Q ss_pred hhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy14676 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIIC 1164 (1827)
Q Consensus 1085 ~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~ 1164 (1827)
.++|.+.+++.|+++.||..|+.++..+.+. . .+..+. ..+++.+...+. |.++.|+..|+.+++.+..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~-------p~~~~~-~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-N-------AQMVED-QGFLDSLRDLIA--DSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-S-------CCCHHH-HHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-C-------hhhccc-ccHHHHHHHHhC--CCChhHHHHHHHHHHHHHh
Confidence 6889999999999999999999999998862 1 122111 246666666665 8899999999999999876
Q ss_pred Hhhhh-hhhhhhhhHHHHHHhhhhh-hh-HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHH
Q psy14676 1165 NLGDY-LKSELPVCLPILLDRLRNE-IT-RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLD 1241 (1827)
Q Consensus 1165 ~~g~~-l~~~l~~lL~~Ll~~L~~e-~t-R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~ 1241 (1827)
..++. .-+..+..++.|+..+.+. .| +...+++++.++... .+....+++.+...++..+..++..++.++.
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~-----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD-----DREAQSICERVTPRLSHANSAVVLSAVKVLM 264 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS-----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHH
T ss_pred hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 54322 1122334455565555432 23 777777776655321 2234567788888888888999999999988
Q ss_pred HHHHhC--CCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHH
Q psy14676 1242 TLLVNY--PSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQ 1319 (1827)
Q Consensus 1242 ~L~~~~--~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~ 1319 (1827)
.+.... ....-......+.+.|..++ ++|..++..++..|+.++..+|+.+. .+. .
T Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~------------~~~-----~---- 322 (591)
T 2vgl_B 265 KFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILK------------QEI-----K---- 322 (591)
T ss_dssp HSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTT------------TCT-----T----
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHH------------HHH-----H----
Confidence 765422 11111122334555555555 48899999999999999998876432 011 1
Q ss_pred HHHHhcCCCCHhHHHHHHHHHhhhhh-hhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHH
Q psy14676 1320 VILNAFTPTSEEVKSAASYTLGSIAV-GNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAI 1397 (1827)
Q Consensus 1320 ~~l~~~~~~s~eVr~aAa~aLG~i~~-~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i 1397 (1827)
.|+ +..+++..||..|...|+.++. .|+..+++.+.+.+.+ +...+..+.++|+.+..+ ..+...|+
T Consensus 323 ~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~----------~~~~~~~~ 391 (591)
T 2vgl_B 323 VFF-VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK----------VEQSAERC 391 (591)
T ss_dssp TTS-CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT----------CHHHHHHH
T ss_pred hhe-eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----------ChhHHHHH
Confidence 122 3334458999999999998764 4778888888888766 344555667777776542 22344677
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHhhccCCC---cchHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhHHHHH
Q psy14676 1398 WAQLFLHCECQEEGTRNVVAECLGKLTLIDPS---NLLPRLQESLKS-NSALMRTTVLTAVKFTISDQMTSSDKDFRFMA 1473 (1827)
Q Consensus 1398 ~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~-~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a 1473 (1827)
++.|++.+....+.++.-+..+++.+...+|. ..++.|.+.+.+ .++..|.+++..+....... ..
T Consensus 392 v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~----~~------ 461 (591)
T 2vgl_B 392 VSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI----DN------ 461 (591)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC----TT------
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc----cC------
Confidence 77777777666777888888999999887875 577888888864 56777877776665543221 10
Q ss_pred hhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCC
Q psy14676 1474 TNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDIS 1553 (1827)
Q Consensus 1474 ~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~ 1553 (1827)
...++..++..+.+..+.||..+..++.++..+.+... .+.+..++.....+ .+
T Consensus 462 -------------------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll~~~~~d------~~ 515 (591)
T 2vgl_B 462 -------------------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQD------SD 515 (591)
T ss_dssp -------------------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHHHHHHTT------CC
T ss_pred -------------------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhhhc------CC
Confidence 12455677777778889999999999999997765432 34444444433222 23
Q ss_pred ccchhHHHHHHHhhhhc
Q psy14676 1554 SIGLKTVISVVYCLGDR 1570 (1827)
Q Consensus 1554 ~~~vRr~Al~~l~s~a~ 1570 (1827)
|.+||.-|...+.-...
T Consensus 516 d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 516 NPDLRDRGYIYWRLLST 532 (591)
T ss_dssp CHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHCc
Confidence 45999988876655533
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.51 E-value=8.4e-13 Score=171.14 Aligned_cols=397 Identities=14% Similarity=0.129 Sum_probs=275.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
.++.++..|.++++.+|..|+.+|..++..-.+. .. ...++.+++.|..+.++.+|..++.+|+.++...+...
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~- 166 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT- 166 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH-
Confidence 4677788889999999999999999987543211 11 23567788888765578899999999999987543322
Q ss_pred HhH--HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc--hHHHHHHHHHHhccCCCCCcccccccCCCCCCC
Q psy14676 155 EHI--ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGG 230 (1827)
Q Consensus 155 p~l--~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~--l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~ 230 (1827)
.++ ..++|.+++.++++++++|+.|+.+|..++...+. .... -..+++.+++.+..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~------------------- 226 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNS------------------- 226 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHGGGS-------------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc-chHHHHHcCcHHHHHHHhcc-------------------
Confidence 222 46788899888888999999999998888754322 1111 12356666665521
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHc-CCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHH
Q psy14676 231 EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-RDLIGDMYRLVSPPLIARFKEREENVKSDIFHAY 309 (1827)
Q Consensus 231 ~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~-~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al 309 (1827)
.++.+|+.|+.+|..++... +..-..+...++|.|+..+++.++.||..++.++
T Consensus 227 -------------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L 281 (530)
T 1wa5_B 227 -------------------------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281 (530)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred -------------------------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12479999999999999765 3333345678899999999999999999999999
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhh-HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch-hh
Q psy14676 310 MALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQV-PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL-PA 387 (1827)
Q Consensus 310 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l-~~ 387 (1827)
+.+.... .......+ ..+++.+++.|+++++.+|..++..++.++..-+......+ ..
T Consensus 282 ~~L~~~~--------------------~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 341 (530)
T 1wa5_B 282 SYLSDGP--------------------QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341 (530)
T ss_dssp HHHHSSC--------------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHhCCC--------------------HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 9888321 01111111 24577888888999999999999888888753322111111 25
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhh
Q psy14676 388 LIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLV 466 (1827)
Q Consensus 388 Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l 466 (1827)
++|.+...|.+ ..|.+|..|+.+|+.++....+....++ ..+
T Consensus 342 ~l~~L~~lL~~-------------------------------------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 384 (530)
T 1wa5_B 342 VLPALRLLLSS-------------------------------------PKENIKKEACWTISNITAGNTEQIQAVIDANL 384 (530)
T ss_dssp HHHHHHHHTTC-------------------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred hHHHHHHHHcC-------------------------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 77888888732 2588999999999999864444444443 357
Q ss_pred hhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhH
Q psy14676 467 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDC 546 (1827)
Q Consensus 467 ~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~ 546 (1827)
+|.|+..+.+.++.+|..|..++..+....+ +. +...+.+. ..++
T Consensus 385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~---~~----------------------~~~~~~l~----------~~~~ 429 (530)
T 1wa5_B 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGL---QR----------------------PDIIRYLV----------SQGC 429 (530)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT---TC----------------------THHHHHHH----------HTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC---Cc----------------------HHHHHHHH----------HCCC
Confidence 8899999988899999999999999986532 00 00011111 1357
Q ss_pred HHHHHHhhcCCCccccccchHHHHHHHhhhccc------cchhhH-----HHHHHHHHHHhhcchhhHHHHHHHhhhhH
Q psy14676 547 LALLRELMTSSDKDFRFMATNDLMSELQKDSIK------LDDDSE-----RKVVKMLLRLLEDKNGEVQNLAVKCLGPL 614 (1827)
Q Consensus 547 l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~------~d~~~~-----~~i~~~l~~~l~D~~~eV~~~A~~~lg~l 614 (1827)
++.+...+.+.++++|..++..|...+....-. ....+. ...++.|..++.+++.+|+..|..+|..+
T Consensus 430 l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 430 IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 888888888889999999888887776542110 001111 22367788889999999999998877654
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.50 E-value=1.9e-12 Score=167.66 Aligned_cols=400 Identities=16% Similarity=0.155 Sum_probs=278.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
-++.++..|.++++.+|..|+.+|..++..-.+. .. ...++.+++.|..+.++.+|..++.+|+.++...++...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 4777888899999999999999999997754411 11 235677888887655589999999999999975443322
Q ss_pred HhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH--HHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 155 EHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ--SITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 155 p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~--~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
..+ ...+|.+++.+.++++++|+.|..+|..++...+. .+..+- .+++.+++.+..+
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~------------------- 214 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEH------------------- 214 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTT-------------------
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcC-------------------
Confidence 222 26889999999988999999999999888764332 111111 2566666655221
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMA 311 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ 311 (1827)
.+|.+|+.++.+|..++...+..-......++|.|+..+++.+++||..++.+++.
T Consensus 215 ------------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 215 ------------------------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSY 270 (528)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 13589999999999999775543344567889999999999999999999999998
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch-hhHHH
Q psy14676 312 LLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL-PALIP 390 (1827)
Q Consensus 312 ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l-~~Llp 390 (1827)
+..... .....+. -..+++.+++.|+++++.+|..++..++.++..-+......+ ..++|
T Consensus 271 l~~~~~-----------------~~~~~~~--~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 331 (528)
T 4b8j_A 271 LSDGTN-----------------DKIQAVI--EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALP 331 (528)
T ss_dssp HTSSCH-----------------HHHHHHH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHH
T ss_pred HHcCCH-----------------HHHHHHH--HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHH
Confidence 873210 0011111 124677888889999999999999999888763332111111 34678
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhhhhh
Q psy14676 391 DVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPP 469 (1827)
Q Consensus 391 ~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~~ 469 (1827)
.+..+|.+ ..++.+|..|+.+|++++...+......+ ..++|.
T Consensus 332 ~L~~lL~~------------------------------------~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~ 375 (528)
T 4b8j_A 332 CLLSLLTQ------------------------------------NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 375 (528)
T ss_dssp HHHHHHHS------------------------------------CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHcC------------------------------------CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Confidence 88888842 01467999999999999864443333322 367899
Q ss_pred HHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHH
Q psy14676 470 LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLAL 549 (1827)
Q Consensus 470 L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~ 549 (1827)
|+..+.+..+.+|..|...+..+..... +.....+ ....+++.
T Consensus 376 L~~lL~~~~~~v~~~a~~aL~nl~~~~~---------------------------~~~~~~l----------~~~~~i~~ 418 (528)
T 4b8j_A 376 LVNLLQTAEFDIKKEAAWAISNATSGGS---------------------------HDQIKYL----------VSEGCIKP 418 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSC---------------------------HHHHHHH----------HHTTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHcCCC---------------------------HHHHHHH----------HHCCCHHH
Confidence 9999988899999999999888875421 0001111 11357888
Q ss_pred HHHhhcCCCccccccchHHHHHHHhhhcc-------ccch----hhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHH
Q psy14676 550 LRELMTSSDKDFRFMATNDLMSELQKDSI-------KLDD----DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLF 615 (1827)
Q Consensus 550 l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~-------~~d~----~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~ 615 (1827)
+...+.+.+++++..++..|...++.+.- .... -.....++.+..++...+.+|+..|...+..+.
T Consensus 419 L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 419 LCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 88888889999999888888777654211 0000 011223566788888999999999998876553
No 33
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.50 E-value=1.1e-10 Score=160.09 Aligned_cols=404 Identities=13% Similarity=0.076 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHHHhhCCC---CC--hh----hh---hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC
Q psy14676 7 QLRDISSIGLKTVISELPL---GS--NA----LA---ANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP 74 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~---~~--~~----~~---~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~ 74 (1827)
......-.-|+++..|+-. .. +. +. ..-.+.+++.+.+.+++..++++...++.+++..+.-.....
T Consensus 152 ~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~- 230 (1023)
T 4hat_C 152 NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRY- 230 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHH-
Confidence 3455555667777777422 10 00 00 011233444455555555577888889999988776322110
Q ss_pred chhHHHHHHHh-hhcCCCCHHHHHHHHHHHHHHHHh-h-ch-----hHHHHHHHHHHHhc-----------------cCC
Q psy14676 75 SFHFVILTALL-PQLSSPRQAVRKRTIVALSHLVMS-C-NL-----QLYTKLIDFLLEGL-----------------TTN 129 (1827)
Q Consensus 75 ~~~~~il~~ll-~~L~~~~~~VRk~Ai~aL~~l~~~-~-~~-----~~~~~l~~~ll~~L-----------------~~~ 129 (1827)
-....+++.++ ..|. ++.+|..|+.||..++.. . ++ +.+..+++..+..+ .+.
T Consensus 231 i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~ 308 (1023)
T 4hat_C 231 IYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANG 308 (1023)
T ss_dssp HHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCT
T ss_pred hcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcccc
Confidence 01235777777 6664 577999999999999872 2 12 22333333333211 112
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhh------HHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHh------CCCccccc
Q psy14676 130 KSTSTNRTYIQCFAAICRQAGHRF------AEHIERVMPLILKYSREEDDELREFCLQACEAFVQR------CPKEITPH 197 (1827)
Q Consensus 130 ~~~~~r~~ai~~l~~la~~~~~~~------~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~------~p~e~~p~ 197 (1827)
.+.+..+..+..+.++.+.....+ .+.+...+..++.+...++.|+-+.|+..+-.+... +...+.|+
T Consensus 309 ~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~ 388 (1023)
T 4hat_C 309 NDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEI 388 (1023)
T ss_dssp THHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 345566778888888887665443 333444445677766667777655555444333331 12346788
Q ss_pred hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCC--CccchhhHHHHHHHHHHHHHHHc
Q psy14676 198 IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSD--DDDMSWKVRRAAAKCLEAIIATR 275 (1827)
Q Consensus 198 l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sd--ddD~sWkVRraAak~L~~l~~~~ 275 (1827)
+..+++.+.+.|.|.+....-++|+ ++-.+++.. |+...||.=| .+|..+..-.
T Consensus 389 ~~~L~~vli~km~~P~e~~ive~d~---------------------~~~~~e~~~d~d~~~~f~~~R---d~L~~l~~l~ 444 (1023)
T 4hat_C 389 CSQLRLVIIENMVRPEEVLVVENDE---------------------GEIVREFVKESDTIQLYKSER---EVLVYLTHLN 444 (1023)
T ss_dssp HHHHHHHHHHSCCCCTTCCEEECTT---------------------SCEEECSSCCGGGHHHHHHHH---HHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCcccccCCCCC---------------------ccHHHHhccchHHHHHHHHHH---HHHHHHhccC
Confidence 9999999999999975442111100 000011111 1123465434 5665555443
Q ss_pred CCchhhhHHhhhHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 276 RDLIGDMYRLVSPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 276 ~~~l~~~~~~v~p~L~~~l~--e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
++ +..+.+.+.+.+.+. +.+|..|.+++.|+|++..... .....+.+|.+++.++.
T Consensus 445 ~~---~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~-------------------~~~e~~~l~~vi~~Ll~ 502 (1023)
T 4hat_C 445 VI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS-------------------EDTEKRFVVTVIKDLLD 502 (1023)
T ss_dssp HH---HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSC-------------------HHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC-------------------chhHHHHHHHHHHHHHH
Confidence 32 455666777766665 3789999999999999883211 12357889999999998
Q ss_pred Hhc-----cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCC
Q psy14676 354 QLR-----EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN 428 (1827)
Q Consensus 354 ~L~-----d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~ 428 (1827)
.+. |++++||++++-++++..+.+.. -.++++++++.+...+.
T Consensus 503 l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~------------------------------- 550 (1023)
T 4hat_C 503 LCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMH------------------------------- 550 (1023)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTT-------------------------------
T ss_pred hhhccccCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhh-------------------------------
Confidence 875 56677888776677777666522 13466777777777662
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhhhhh--------hhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 429 EYSDDDDMSWKVRRAAAKCLEAIIATRRDLI--------GDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 429 e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f--------~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
+.+.++..+|+.++..+++.++..+ .||++.++..+...+.....+-+..+++.++.+++..+
T Consensus 551 ------~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 551 ------ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp ------CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ------cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 1246799999999999999988666 47999999888888876666777788888888887654
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=4.2e-13 Score=155.32 Aligned_cols=181 Identities=16% Similarity=0.210 Sum_probs=159.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCC
Q psy14676 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQ 332 (1827)
Q Consensus 254 dD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~ 332 (1827)
++.+|+.|++|+.+|..++..+++.....+..+++.|..++ ++.+.+||.+++.+++.+++..+
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--------------- 89 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--------------- 89 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG---------------
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh---------------
Confidence 45789999999999999999877655566789999999999 59999999999999999996532
Q ss_pred CCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCC
Q psy14676 333 EDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEG 412 (1827)
Q Consensus 333 ~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~ 412 (1827)
..+.++++.++|.+++.++|+++.||+++...+..+.... +++.++|.+...++
T Consensus 90 -----~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~--------------- 143 (242)
T 2qk2_A 90 -----KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLS--------------- 143 (242)
T ss_dssp -----GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTT---------------
T ss_pred -----hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc---------------
Confidence 3467899999999999999999999999999999988754 35788999988873
Q ss_pred CCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHH
Q psy14676 413 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 490 (1827)
Q Consensus 413 ~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~ 490 (1827)
+.+|++|..++.+++.++.+++ ..+.+|++.++|.+..++.|.+++||..|+.+++
T Consensus 144 ----------------------~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 144 ----------------------NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp ----------------------CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ----------------------CCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2479999999999999988875 3678999999999999999999999999999999
Q ss_pred HHHhhcc
Q psy14676 491 ALLKGTR 497 (1827)
Q Consensus 491 ~L~~~~g 497 (1827)
.+....|
T Consensus 202 ~l~~~vg 208 (242)
T 2qk2_A 202 TLIKLMG 208 (242)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 9998887
No 35
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.47 E-value=4.5e-09 Score=144.27 Aligned_cols=462 Identities=12% Similarity=0.132 Sum_probs=260.3
Q ss_pred CHHHHHHHHHHHHHHHhhccCC-CCchhHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q psy14676 51 DVSVQLEALDILSDLLSRFGAL-LPSFHFVILTALLPQLS-----SPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLE 124 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~-l~~~~~~il~~ll~~L~-----~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~ 124 (1827)
++.+|--|+.+|...+..+++. ..+....+.+.+++.+. +..+.||.+...++..++...-+..|..+++.+++
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~ 135 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQG 135 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHH
Confidence 6899999999998888843332 00023345555555543 23468999999999999998766777778888887
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhch------------------hhHHh-HHHHHHHHHhhcc----cCchHHHHHHHH
Q psy14676 125 GLTTNKSTSTNRTYIQCFAAICRQAGH------------------RFAEH-IERVMPLILKYSR----EEDDELREFCLQ 181 (1827)
Q Consensus 125 ~L~~~~~~~~r~~ai~~l~~la~~~~~------------------~~~p~-l~~i~p~l~~~~~----~~~delRe~al~ 181 (1827)
.+..+.........+..+..+.+-..+ .+... ++.+++.+++.+. ..+++++..++.
T Consensus 136 ~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~ 215 (980)
T 3ibv_A 136 VIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ 215 (980)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 775422213344556666655554321 11111 3444555555543 367889999999
Q ss_pred HHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 182 ACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 182 ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
++.+|+.-.|-..-- -+.+++.+++++.. -.+|
T Consensus 216 ~l~s~i~wi~~~~i~-~~~ll~~l~~~L~~----------------------------------------------~~~r 248 (980)
T 3ibv_A 216 VYAQWVSWININLIV-NEPCMNLLYSFLQI----------------------------------------------EELR 248 (980)
T ss_dssp HHHHHTTTSCHHHHH-CHHHHHHHHHHTTS----------------------------------------------HHHH
T ss_pred HHHHHHhhcCHHhhh-cchHHHHHHHHcCC----------------------------------------------hHHH
Confidence 999999866542111 15678888876621 0589
Q ss_pred HHHHHHHHHHHHHcCC--chhhhHHhh-hHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 262 RAAAKCLEAIIATRRD--LIGDMYRLV-SPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 262 raAak~L~~l~~~~~~--~l~~~~~~v-~p~L~~~l~--e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
.+|++||..++....+ ...+++..+ +...+..+. +.+.+++.....-+.++....... ... +. ..+...
T Consensus 249 ~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~---~~--~~~~~~ 322 (980)
T 3ibv_A 249 CAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSD---PS--ELSPEL 322 (980)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTS---CC----CHHH
T ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccC---cc--ccchhh
Confidence 9999999999876443 111111111 111122222 456666554443333332221111 000 00 000011
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCc---------ccccCchhhHHHHHHHHhhhhhcccCCCC
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLP---------GCLAPSLPALIPDVTSVAEWDEEEGLGGE 407 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~---------~~l~~~l~~Llp~i~~~L~~~~~~~~~~~ 407 (1827)
.....+.+..+++.+++.+.+++.+|-..++.++..+..... ..+.++++.|++.+.+-+. |
T Consensus 323 ~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~----y----- 393 (980)
T 3ibv_A 323 KENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMK----Y----- 393 (980)
T ss_dssp HHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTS----C-----
T ss_pred hhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHcc----C-----
Confidence 234556788899999999999999999988888887775432 1223455555555444332 1
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCcccH-HHHHHHHHHHHHHHHHhh-hhhhhhHH-hhhhhHHHhh---cchhhhh
Q psy14676 408 GGGEGMDTEEEDGEDEGEDDNEYSDDDDMSW-KVRRAAAKCLEAIIATRR-DLIGDMYR-LVSPPLIARF---KEREENV 481 (1827)
Q Consensus 408 ~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w-~vr~~a~~~l~~l~~~~~-~~f~~~~~-~l~~~L~~~~---~d~~~~V 481 (1827)
+++++.+ +|+|.+| +..+ ..|.... .+...+...+ +.+.+++. .+.+.+.+.+ ....|+.
T Consensus 394 --------p~d~~~~---~~~d~ed--~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~ 459 (980)
T 3ibv_A 394 --------DESQEWD---DDPDSEE--EAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQL 459 (980)
T ss_dssp --------CTTCCCC---CCSSSST--HHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred --------CCccccc---cccchhH--HHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHH
Confidence 0100000 0000011 1122 2444444 4444444444 44444222 3444444444 3456888
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccc
Q psy14676 482 KSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDF 561 (1827)
Q Consensus 482 r~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~ 561 (1827)
+++++-.+..+.+........ . .+.
T Consensus 460 ~EaaL~~l~~iaE~i~~~~~~-------~-~~~----------------------------------------------- 484 (980)
T 3ibv_A 460 IEFALYETYIFGEGLRGPDAF-------F-NEV----------------------------------------------- 484 (980)
T ss_dssp HHHHHHHHHHTTTTCCSGGGT-------B-CSS-----------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc-------c-Ccc-----------------------------------------------
Confidence 888888877776643310000 0 000
Q ss_pred cccchHHHHHHHhhhccccchhhHHHHHHHHHHHhh-----cchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccc
Q psy14676 562 RFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE-----DKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTD 636 (1827)
Q Consensus 562 Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~-----D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~ 636 (1827)
....+++++.+..+++ ++.+.||..+..++|+..+-+.. . ..|++.
T Consensus 485 --------------------~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~---~------~~~l~~ 535 (980)
T 3ibv_A 485 --------------------DKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY---E------SAAIPA 535 (980)
T ss_dssp --------------------SCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT---C------CTTHHH
T ss_pred --------------------cchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc---C------chhHHH
Confidence 0012234455555544 78899999999999988766553 1 268888
Q ss_pred hhhhhhh--hhhhhhhhhhhhhHHHHHHHHhhCCCccc
Q psy14676 637 GIPILGS--FLRKNQRALKLSTLLLLDTLLVNYPSAIS 672 (1827)
Q Consensus 637 ~i~~l~~--~l~~~~~~lk~~~l~~l~~l~~~~~~~~~ 672 (1827)
+++.+.. ++++++..++..+..++..+++.....+.
T Consensus 536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~ 573 (980)
T 3ibv_A 536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV 573 (980)
T ss_dssp HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh
Confidence 8999998 88888888888888888888765554433
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.47 E-value=4.7e-12 Score=166.57 Aligned_cols=368 Identities=13% Similarity=0.097 Sum_probs=249.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhh
Q psy14676 1223 SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 1302 (1827)
Q Consensus 1223 ~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~l 1302 (1827)
.++..++-..|...+-++..++.. .++....+++.+..-+.+.+..++..|+.+|+.+.. +
T Consensus 77 k~~~s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~------------ 137 (618)
T 1w63_A 77 KLIASQKFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--S------------ 137 (618)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--H------------
T ss_pred HHHcCCchHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--H------------
Confidence 344456667788777777766543 355556678888888889999999999988887542 0
Q ss_pred hhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh---hhhhHHHHHHhhhc-CchhhHHHHHHHHHHHh
Q psy14676 1303 PQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN---LQQYVPFVLKEIEN-QPKRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1303 geiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~---l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~ 1378 (1827)
+ ..+.+.+.+.+++.+.++.||.+|+.+++.+...+ +..++|.+.+.+.+ ++..++..+++|.++..
T Consensus 138 -~--------~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 138 -E--------MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp -H--------HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred -H--------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 1 12567889999999999999999999999976543 34677777777766 35678888999999865
Q ss_pred hccccccchhhhhchHHHHHHHHhhhhc-----------CCchhHHHHHHHHHHHhhccCCC---cchHHHHHhhhc---
Q psy14676 1379 WQSTSTSGVAQLQQFVPAIWAQLFLHCE-----------CQEEGTRNVVAECLGKLTLIDPS---NLLPRLQESLKS--- 1441 (1827)
Q Consensus 1379 ~~~~s~~g~~~L~~~~~~i~~~L~~~~~-----------~~~e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~--- 1441 (1827)
.-.. ....+.++++.++..|.+.+. ..++..+..+.++||+++..+|+ .+.+.|...++.
T Consensus 209 ~~~~---~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 209 RSPD---MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTET 285 (618)
T ss_dssp SHHH---HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCC
T ss_pred hChH---HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc
Confidence 2100 012345667777776665322 23677788888999999877653 333344433321
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhh
Q psy14676 1442 NSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGP 1521 (1827)
Q Consensus 1442 ~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~ 1521 (1827)
.....+..+..|++.++.-.+ ++.++ ...++.+..++.++++
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~---~~~l~-----------------------~~a~~~L~~~L~~~d~------------ 327 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKS---ESGLR-----------------------VLAINILGRFLLNNDK------------ 327 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCC---CHHHH-----------------------HHHHHHHHHHHTCSST------------
T ss_pred ccchHHHHHHHHHHHHHhcCC---CHHHH-----------------------HHHHHHHHHHHhCCCC------------
Confidence 112233333444443332110 11110 0111222222322332
Q ss_pred hhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcccCCccccccccc
Q psy14676 1522 LVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIH 1601 (1827)
Q Consensus 1522 L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~llp~l~~~~~~ 1601 (1827)
++|++|+.+|+..++++|+.+ .++...+++.++
T Consensus 328 ----------------------------------~vr~~aL~~L~~i~~~~p~~~--------~~~~~~i~~~l~----- 360 (618)
T 1w63_A 328 ----------------------------------NIRYVALTSLLKTVQTDHNAV--------QRHRSTIVDCLK----- 360 (618)
T ss_dssp ----------------------------------TTHHHHHHHHHHHHHHHHHHH--------GGGHHHHHHGGG-----
T ss_pred ----------------------------------chHHHHHHHHHHHHhhCHHHH--------HHHHHHHHHHcc-----
Confidence 899999999999999889888 777777777666
Q ss_pred ccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhh-hccCChHHHHHHHHhhccchhhHHHHHHHHHHH
Q psy14676 1602 ILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTC-LDRVDMFEFLNHLESGLRDHYDIKMLTYLMLAR 1680 (1827)
Q Consensus 1602 ~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~-~~~~~~~~~~~~~~~gl~d~~dik~l~~~~l~~ 1680 (1827)
|+...+|+.|+|+||.+.+.. .+.+ +.+++.++.. ++.++|..+...+.+
T Consensus 361 -------------------------d~d~~Ir~~alelL~~l~~~~nv~~i-v~eL~~~l~~---~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 361 -------------------------DLDVSIKRRAMELSFALVNGNNIRGM-MKELLYFLDS---CEPEFKADCASGIFL 411 (618)
T ss_dssp -------------------------SSCHHHHHHHHHHHHHHCCSSSTHHH-HHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred -------------------------CCChhHHHHHHHHHHHHcccccHHHH-HHHHHHHHHh---CCHHHHHHHHHHHHH
Confidence 678899999999999998753 2222 3444444432 377999999999999
Q ss_pred HHhhChHHHHHHHHHhhHHHHhhhcccccc---chhhHHHHHHHHHHHHHHHHHHHHhc
Q psy14676 1681 LAQMTPAALLQRLERIVEPLRNTVTLKVKA---NSVKQEYEKQDELKRSAMRAVAALLT 1736 (1827)
Q Consensus 1681 l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~---~~~kqe~e~~~e~~~s~~r~~~~l~~ 1736 (1827)
+|...|......++.+.+.++..-. .++. ..+++-+++..++++++++.++.+..
T Consensus 412 la~k~~~~~~~~v~~ll~lL~~~~~-~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~ 469 (618)
T 1w63_A 412 AAEKYAPSKRWHIDTIMRVLTTAGS-YVRDDAVPNLIQLITNSVEMHAYTVQRLYKAIL 469 (618)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTGG-GSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHh
Confidence 9999888888889999998887753 4565 67889999999999999998887754
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.44 E-value=4.8e-11 Score=158.37 Aligned_cols=484 Identities=12% Similarity=0.049 Sum_probs=300.9
Q ss_pred CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcC-CchhhHHHHHHHHHH
Q psy14676 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGD-NFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1033 ~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D-~~~~V~~eAl~~l~~ 1111 (1827)
...+|.|.+.++++++..|..++..|+.++........ .......++.++..+.+ +++.++..|+.++..
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~---------i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA---------IMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 83 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHH---------HTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHH---------HHhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 45789999999998999999999999987765432100 00023567888888875 478999999888887
Q ss_pred HHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhHHHHHHhhhhh
Q psy14676 1112 FVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSE-LPVCLPILLDRLRNE 1188 (1827)
Q Consensus 1112 lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~-l~~lL~~Ll~~L~~e 1188 (1827)
+...- +.+..+ ...++.++..+. +.+.++|..|+.+++.+........... -...+|.|++.++++
T Consensus 84 Ls~~~---------~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 84 LSHHR---------EGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HTTSH---------HHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HhcCh---------hhHHHHHHcCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 65320 111111 124566666666 5678999999999999987643322222 246889999999876
Q ss_pred hh--HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchh-HHHHHHHHHHHHHHHHhCCCCcChHhH-HHHHHHhh
Q psy14676 1189 IT--RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEML-NKVTVELA 1264 (1827)
Q Consensus 1189 ~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~~~~~l~~~~~-~~ll~~L~ 1264 (1827)
.. +..++.++..++.........-.-...++.|..++++.+ ..++..++.+|..+..+.. .....+ ...++.|.
T Consensus 153 ~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALG 230 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT--HHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHH
Confidence 55 566677888888531100000012356788888888654 5677788888888764321 111112 24678888
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhh
Q psy14676 1265 PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA 1344 (1827)
Q Consensus 1265 ~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~ 1344 (1827)
.++.+.+..++..++.+|..++...+.. .....+++.+++.+.++++++|..|+.+|++++
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~-------------------~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ-------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTC-------------------CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhh-------------------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654321 112468899999999999999999999999987
Q ss_pred hhhh--------hhhHHHHHHhhhcC---chhhHHHHHHHHHHHhhccccccchhhhhc--hHHHHHHHHhhhhcCCc-h
Q psy14676 1345 VGNL--------QQYVPFVLKEIENQ---PKRQYLLLHSLKEIISWQSTSTSGVAQLQQ--FVPAIWAQLFLHCECQE-E 1410 (1827)
Q Consensus 1345 ~~~l--------~~~LP~Il~~i~~~---~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~--~~~~i~~~L~~~~~~~~-e 1410 (1827)
.++- ...+|.+++.+... +..+...+++|+-+...... ....+. .....++.|.+.+.+.. +
T Consensus 292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~----~~~~q~~v~~~~~l~~L~~lL~~~~~~ 367 (644)
T 2z6h_A 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE----AEMAQNAVRLHYGLPVVVKLLHPPSHW 367 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT----HHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch----HHHHHHHHHHccChHHHHHHhCccCch
Confidence 6431 12567777777652 35667778888877531100 001111 11234566777665543 5
Q ss_pred hHHHHHHHHHHHhhccC-------CCcchHHHHHhhhcCCHHHHHHHHHHHHH--HhhhcCCCCChhHHHHHhhhhhhhh
Q psy14676 1411 GTRNVVAECLGKLTLID-------PSNLLPRLQESLKSNSALMRTTVLTAVKF--TISDQMTSSDKDFRFMATNDLMSEL 1481 (1827)
Q Consensus 1411 ~vR~~aAecLGkL~~~~-------p~~~lP~L~~~l~~~~~~~R~t~l~Alk~--~~~~~~~~~d~~l~~~a~~~l~~~l 1481 (1827)
.+|..++.+|+.|+... -...+|.|.+.+.+.++.+|..+..++.. ... ..-++.++..+...|....
T Consensus 368 ~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~---~~~~~~v~~~a~~aL~~La 444 (644)
T 2z6h_A 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE---GVRMEEIVEGCTGALHILA 444 (644)
T ss_dssp HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CC---SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc---cccHHHHHHHHHHHHHHHh
Confidence 79999999999998632 23678999999887665554433333222 100 0001111111111111000
Q ss_pred hhcccccChh-HHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHH-----HHHHHHhhhcccccccccCCcc
Q psy14676 1482 QKDSIKLDDD-SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVET-----IVDALCSNMVSDKEQLRDISSI 1555 (1827)
Q Consensus 1482 ~~~~~~~~~~-~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~-----~v~~l~~~l~~~~~~~~~~~~~ 1555 (1827)
..+. .... .....++.|+.++.+++++|+..|+.+|+.++.. .+.... .+..+...+.+. |.
T Consensus 445 ~~~~--~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~--------~~ 512 (644)
T 2z6h_A 445 RDVH--NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSR--------NE 512 (644)
T ss_dssp TSHH--HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCS--------CH
T ss_pred cCHH--HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCC--------CH
Confidence 0000 0000 1134679999999999999999999999998853 111111 123333333333 33
Q ss_pred chhHHHHHHHhhhhccCCCCc
Q psy14676 1556 GLKTVISVVYCLGDRNSSSNM 1576 (1827)
Q Consensus 1556 ~vRr~Al~~l~s~a~~~p~li 1576 (1827)
+||..|..+|...+.+++...
T Consensus 513 ~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 513 GVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp HHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHHHHHHHhccCcHhh
Confidence 999999999999998876544
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.43 E-value=1.8e-09 Score=142.58 Aligned_cols=510 Identities=11% Similarity=0.020 Sum_probs=311.3
Q ss_pred ChhhHHHHHHHHHHHHHhcccc-ccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCC
Q psy14676 1047 SALMRTTHQSNQTFNVIIQRND-IHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSY 1125 (1827)
Q Consensus 1047 ~~~~R~~a~~~L~~l~~~~~~~-l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~ 1125 (1827)
...+|..+.-++..++...... -+.. |-..+-..|...+......-...|++++..++.. ..
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g--------~~ 279 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKAR---------FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG--------PL 279 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHH---------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSS--------SH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHH---------HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcC--------CH
Confidence 4568888888888666654410 0111 1223333444444444444444556666666531 11
Q ss_pred CcchhH---HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhHHHHHHhhhhhh--hHHHHHHHHH
Q psy14676 1126 DFAPFT---SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSE-LPVCLPILLDRLRNEI--TRLTTVKALT 1199 (1827)
Q Consensus 1126 ~~~~~l---~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~-l~~lL~~Ll~~L~~e~--tR~~av~al~ 1199 (1827)
+....+ ...++.++..+. ..+..+++.|+.+++.+... .....+ .....|.|...+++++ .|..|+-+|.
T Consensus 280 ~~~~~~~~~~G~v~~li~Ll~--s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~ 355 (810)
T 3now_A 280 DVGNQVVAREGILQMILAMAT--TDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLC 355 (810)
T ss_dssp HHHHHHHHTTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111111 134455555555 56889999999999996543 222221 2223478888776554 4888888888
Q ss_pred HHhcCCC---c-cccc-hhhhhhHhhhhhhhcch--hHHHHHHHHHHHHHHHHhCCCCcChHhH--HHHHHHhhhhcCCC
Q psy14676 1200 KIAASPL---R-IDLR-PILTDGIPILGSFLRKN--QRALKLSTLLLLDTLLVNYPSAISTEML--NKVTVELAPLVSES 1270 (1827)
Q Consensus 1200 ~ia~~~~---~-~dl~-p~~~~~l~~L~~~Lrk~--~r~lR~~al~aL~~L~~~~~~~l~~~~~--~~ll~~L~~ll~d~ 1270 (1827)
.++.+.. + ..+. .-+..+++.|..+|... +..+|..++++|..|..... ....+. .+++|.|..+++..
T Consensus 356 kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~--vk~~lv~d~g~Ip~LV~LL~s~ 433 (810)
T 3now_A 356 KLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE--CKEKLIEDKASIHALMDLARGG 433 (810)
T ss_dssp HHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH--HHHHHHHCHHHHHHHHHHHHTT
T ss_pred HhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH--HHHHHHHccchHHHHHHHhCCC
Confidence 8875321 1 1122 11345677788888776 67899999999998855321 111222 36788888899889
Q ss_pred ChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcc-cccCC-------Cc---------hhhHHHHHHHhcCCCCHhHH
Q psy14676 1271 DLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIG-RHTDL-------TS---------VADLKQVILNAFTPTSEEVK 1333 (1827)
Q Consensus 1271 D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG-~~~~~-------~~---------~~~l~~~~l~~~~~~s~eVr 1333 (1827)
|..+...++.+|+.++...+..-..+.+. .+.... .++.- .+ -...+|.|...+.++++++|
T Consensus 434 d~~i~~~al~~L~NLt~~~d~q~~~~~l~-~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vq 512 (810)
T 3now_A 434 NQSCLYGVVTTFVNLCNAYEKQEMLPEMI-ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQ 512 (810)
T ss_dssp CGGGHHHHHHHHHHHTTCSCCCCCCCSCG-GGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchhhhhhHHHH-HHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHH
Confidence 99999999999999998543211101110 001110 11000 00 02478999999999999999
Q ss_pred HHHHHHHhhhhhh--h---h-h-hhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhh-hhc-hHHHHHHHHhh
Q psy14676 1334 SAASYTLGSIAVG--N---L-Q-QYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQ-LQQ-FVPAIWAQLFL 1403 (1827)
Q Consensus 1334 ~aAa~aLG~i~~~--~---l-~-~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~-L~~-~~~~i~~~L~~ 1403 (1827)
..|+.+|++++.. + + + -.+|.++..+.++ +..|....|+|..+..... +.. +.. ......++|++
T Consensus 513 e~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~-----p~~~~~~~~~~~aIppLv~ 587 (810)
T 3now_A 513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN-----PEVSFSGQRSLDVIRPLLN 587 (810)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-----HHHHTTTHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-----hhhhhcchhhhcHHHHHHH
Confidence 9999999998642 1 1 1 2567777777653 3457778899988765211 111 111 12234566666
Q ss_pred hhcCCch-hHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHh
Q psy14676 1404 HCECQEE-GTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMAT 1474 (1827)
Q Consensus 1404 ~~~~~~e-~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~ 1474 (1827)
.+.++.. ..+..++.+|+.|+...+ ...+|.|.+++.++++.+|..++.+|..+.... +...
T Consensus 588 LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-----~~~~---- 658 (810)
T 3now_A 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-----DVIK---- 658 (810)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-----HHHH----
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-----HHHH----
Confidence 6654322 234458899999998653 257899999999999999999999999998632 1111
Q ss_pred hhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhh---hhhH--HHHHHHHHhhhccccccc
Q psy14676 1475 NDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVK---EFQV--ETIVDALCSNMVSDKEQL 1549 (1827)
Q Consensus 1475 ~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~---~~~~--~~~v~~l~~~l~~~~~~~ 1549 (1827)
.+.+. ...++.++.++..++..+|..|+.+|+.|+..-+ ...+ ...+.+|+.-+.+++.
T Consensus 659 -----~~v~~---------~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~-- 722 (810)
T 3now_A 659 -----MFEGN---------NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP-- 722 (810)
T ss_dssp -----HHHSS---------SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH--
T ss_pred -----HHHhc---------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH--
Confidence 01010 1366899999999999999999999999986321 1122 2466677766655444
Q ss_pred ccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcc-cCCcccccccccccCCcchhccccceeeeccCccccccc
Q psy14676 1550 RDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLT-THPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDD 1628 (1827)
Q Consensus 1550 ~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~-~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vdd 1628 (1827)
++|+.|..++.-+....++.. ..+.. ..+|.|.. |+..+ -+.
T Consensus 723 ------~vq~~A~~aL~NL~~~s~e~~--------~~l~e~G~i~~L~~-----LL~~~------------------d~~ 765 (810)
T 3now_A 723 ------AVQHRGIVIILNMINAGEEIA--------KKLFETDIMELLSG-----LGQLP------------------DDT 765 (810)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHH--------HHHHTSTHHHHHTT-----SCCCT------------------TST
T ss_pred ------HHHHHHHHHHHHHHhCCHHHH--------HHHHHCCCHHHHHH-----HHhCc------------------ccC
Confidence 999999999977766444332 21111 13333331 11110 113
Q ss_pred CchhhhhHHHHHHHHHhhh
Q psy14676 1629 GLDIRKAAFECMYTLLDTC 1647 (1827)
Q Consensus 1629 gl~~Rk~a~e~~~~ll~~~ 1647 (1827)
.-++++.|.+++..+++.=
T Consensus 766 ~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 766 RAKAREVATQCLAAAERYR 784 (810)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 4578889999999999863
No 39
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.42 E-value=1.9e-08 Score=138.15 Aligned_cols=491 Identities=13% Similarity=0.076 Sum_probs=285.7
Q ss_pred chHHHHHHHHHHHHHHHh----hCCCCChhhhhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhhccCCCCc
Q psy14676 4 DKEQLRDISSIGLKTVIS----ELPLGSNALAANVCRRITGKLSTAIEKQ----EDVSVQLEALDILSDLLSRFGALLPS 75 (1827)
Q Consensus 4 ~~~~~Rdi~~~~Lktvi~----~lp~~~~~~~~~v~~~L~P~Ll~~l~~~----~~~~v~~~al~iL~~l~~~~~~~l~~ 75 (1827)
...++|=.++..||..|. .+|.. ....++..|+..+.....++ ..+.++.....+++.++.+.-| .
T Consensus 61 ~~~~vR~faa~~Lk~~I~~~W~~L~~e---~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p---~ 134 (1023)
T 4hat_C 61 TNPQSKFIALSILDKLITRKWKLLPND---HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---Q 134 (1023)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGSCHH---HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT---T
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCHH---HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh---h
Confidence 356899999999999988 46653 34456667776665543211 0356677788888888887655 2
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---h------------H----HHHHHHHHHHhccCCCCHHHHH
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL---Q------------L----YTKLIDFLLEGLTTNKSTSTNR 136 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~------------~----~~~l~~~ll~~L~~~~~~~~r~ 136 (1827)
.++.+++-++..+++ ++..+..+...+..+.+.+.+ . . ++.++.-+...|.+..+..+..
T Consensus 135 ~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~ 213 (1023)
T 4hat_C 135 NWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIV 213 (1023)
T ss_dssp TCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred hchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 567788888887764 345566666777776665321 0 1 1222222223333345567888
Q ss_pred HHHHHHHHHHHHhchhhHHhHHHHHHHHH-hhcccCchHHHHHHHHHHHHHHH-hC-CC--ccccchHHHHHHHHHHh--
Q psy14676 137 TYIQCFAAICRQAGHRFAEHIERVMPLIL-KYSREEDDELREFCLQACEAFVQ-RC-PK--EITPHIQSITELCLTYI-- 209 (1827)
Q Consensus 137 ~ai~~l~~la~~~~~~~~p~l~~i~p~l~-~~~~~~~delRe~al~ale~~~~-~~-p~--e~~p~l~~ii~~ll~~l-- 209 (1827)
.+++|+++..+..+-...- -..+++.++ +++. ++++|+.|..++-.++. .+ +. ++...+..+++..+..+
T Consensus 214 ~~L~~l~s~l~WI~i~~i~-~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~ 290 (1023)
T 4hat_C 214 ATLESLLRYLHWIPYRYIY-ETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIAT 290 (1023)
T ss_dssp HHHHHHHHHTTTSCTHHHH-SSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHhc-chhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988766532210 135778887 6664 67899999988877776 34 22 23334444444444322
Q ss_pred -ccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchh------hh
Q psy14676 210 -TYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG------DM 282 (1827)
Q Consensus 210 -~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~------~~ 282 (1827)
-+.++......=.. . +++| -.+.+.-++.+.++..++...+. ++
T Consensus 291 ~i~p~~~~l~~~~~~----------~-----------------~~~D--~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~ 341 (1023)
T 4hat_C 291 SVMPVTADLKATYAN----------A-----------------NGND--QSFLQDLAMFLTTYLARNRALLESDESLREL 341 (1023)
T ss_dssp HTCCTTCCHHHHHHH----------T-----------------CTTH--HHHHHHHHHHHHHHHHHHGGGGTSCGGGHHH
T ss_pred HhCCCcchHHHHHhc----------c-----------------ccch--HHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Confidence 11111100000000 0 0000 02344555566666655544333 23
Q ss_pred HHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCC---
Q psy14676 283 YRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKS--- 359 (1827)
Q Consensus 283 ~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~--- 359 (1827)
+...+..|+......++++=.-++..|..+.+..... +.....+.+.+..+++.+++.+.-+.
T Consensus 342 l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e--------------~~~~~~~~~~~~~L~~vli~km~~P~e~~ 407 (1023)
T 4hat_C 342 LLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE--------------PLKKHIYEEICSQLRLVIIENMVRPEEVL 407 (1023)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS--------------TTTGGGGHHHHHHHHHHHHHSCCCCTTCC
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc--------------hHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3333446666666778888788888888887643210 11345677888888888888764322
Q ss_pred ----------------HhHHHHHH----HHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccC
Q psy14676 360 ----------------IRTRQDCL----ALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEED 419 (1827)
Q Consensus 360 ----------------~~vR~a~~----~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed 419 (1827)
..-+ ..| ..|..+....+. +.++.+++.+.+.+..
T Consensus 408 ive~d~~~~~~e~~~d~d~~-~~f~~~Rd~L~~l~~l~~~---~~~~~~~~~l~~~l~~--------------------- 462 (1023)
T 4hat_C 408 VVENDEGEIVREFVKESDTI-QLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDG--------------------- 462 (1023)
T ss_dssp EEECTTSCEEECSSCCGGGH-HHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHSS---------------------
T ss_pred cCCCCCccHHHHhccchHHH-HHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHhcC---------------------
Confidence 1111 122 333344443332 2334444444444310
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhc-----chhhhhHHHHHHHHHHHH
Q psy14676 420 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFK-----EREENVKSDIFHAYMALL 493 (1827)
Q Consensus 420 ~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~-----d~~~~Vr~~a~~~l~~L~ 493 (1827)
...+|+.|.+++-+++.+++... +...++++.++|.|++... |....||..+.-++++..
T Consensus 463 --------------~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 463 --------------SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp --------------TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred --------------CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 11369999999999999997665 4577899999998888665 344455544443333332
Q ss_pred hhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHH
Q psy14676 494 KGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSEL 573 (1827)
Q Consensus 494 ~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~ 573 (1827)
+-+.
T Consensus 529 ~wl~---------------------------------------------------------------------------- 532 (1023)
T 4hat_C 529 RFLK---------------------------------------------------------------------------- 532 (1023)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 2110
Q ss_pred hhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhh
Q psy14676 574 QKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALK 653 (1827)
Q Consensus 574 ~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk 653 (1827)
..+...+.++..++..+.|.+++|+..|..++..++..+...-...-.-.+.||++.++..+.+...+-+...+
T Consensus 533 ------~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~ 606 (1023)
T 4hat_C 533 ------AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV 606 (1023)
T ss_dssp ------HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH
T ss_pred ------ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHH
Confidence 01123456677788888888889999999999999888775321100113357888887777776665555555
Q ss_pred hhhHHHHHHHHhhCC
Q psy14676 654 LSTLLLLDTLLVNYP 668 (1827)
Q Consensus 654 ~~~l~~l~~l~~~~~ 668 (1827)
.....+++.++++.+
T Consensus 607 ~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 607 HTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 566666666654433
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.42 E-value=4.3e-11 Score=154.68 Aligned_cols=476 Identities=12% Similarity=0.043 Sum_probs=290.1
Q ss_pred CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcC-CchhhHHHHHHHHHH
Q psy14676 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGD-NFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1033 ~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D-~~~~V~~eAl~~l~~ 1111 (1827)
...+|.+.+.++++++..|..++..|+.++.+....-. . ...+..++.++..+.+ +++.++..|+.++..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~-~--------~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-I--------MRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 86 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHH-H--------HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHH-H--------HhCcchHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34688888888888899999999999877654321100 0 0012467777777753 478899999888888
Q ss_pred HHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhHHHHHHhhhhh
Q psy14676 1112 FVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSE-LPVCLPILLDRLRNE 1188 (1827)
Q Consensus 1112 lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~-l~~lL~~Ll~~L~~e 1188 (1827)
+... .+....+ ...++.++..+. +.+.+++..|+.+++.+.......-... -...+|.|++.++++
T Consensus 87 ls~~---------~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 87 LSHH---------REGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HTTS---------HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred HHcC---------chhHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 6532 1111111 124566666666 6679999999999999987643211111 245788999999866
Q ss_pred hh--HHHHHHHHHHHhcCCCccccc-hh-hhhhHhhhhhhhcchh-HHHHHHHHHHHHHHHHhCCCCcChHh-HHHHHHH
Q psy14676 1189 IT--RLTTVKALTKIAASPLRIDLR-PI-LTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEM-LNKVTVE 1262 (1827)
Q Consensus 1189 ~t--R~~av~al~~ia~~~~~~dl~-p~-~~~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~~~~~l~~~~-~~~ll~~ 1262 (1827)
.. |..+..++..++.... +.. .+ -...++.|..++++.+ ...+.++..+|..+..+.. ..... -.+.++.
T Consensus 156 ~~~~~~~~~~~L~~la~~~~--~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 156 NVKFLAITTDCLQILAYGNQ--ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQA 231 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT--HHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHH
Confidence 54 7777888888875311 001 11 1346777888887654 4566677778777764321 11111 1257888
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhh
Q psy14676 1263 LAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGS 1342 (1827)
Q Consensus 1263 L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~ 1342 (1827)
|..++.+.+..++..++.+|..++...+.. ......++.+++.+.++++++|..|+.+|++
T Consensus 232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-------------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCChhh-------------------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 889999999999999999999988753321 1124688999999999999999999999999
Q ss_pred hhhhhh--------hhhHHHHHHhhhc-C--chhhHHHHHHHHHHHhhccccccchhhhhc-h-HHHHHHHHhhhhcCCc
Q psy14676 1343 IAVGNL--------QQYVPFVLKEIEN-Q--PKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-F-VPAIWAQLFLHCECQE 1409 (1827)
Q Consensus 1343 i~~~~l--------~~~LP~Il~~i~~-~--~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~-~~~i~~~L~~~~~~~~ 1409 (1827)
++.++- ...+|.+++.+.. + +..+...+++|+-+...... ....+. . -...++.|.+.+.++.
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE----AEMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT----HHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHcCChhHHHHHhcccc
Confidence 876431 1246777777754 2 35667778888877431100 010111 0 0123566666665544
Q ss_pred -hhHHHHHHHHHHHhhccCC-------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhh
Q psy14676 1410 -EGTRNVVAECLGKLTLIDP-------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSEL 1481 (1827)
Q Consensus 1410 -e~vR~~aAecLGkL~~~~p-------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l 1481 (1827)
..+|..++.+|+.++.... ..++|.|.+.+++.++.+|..+..++.......+.. ...+...++..|....
T Consensus 369 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~-~~~i~~~~~~al~~L~ 447 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR-MEEIVEGCTGALHILA 447 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC-HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcccc-HHHHHHHHHHHHHHHh
Confidence 4799999999999996321 367899999999888888876665555411000001 1122111222221111
Q ss_pred hhcccccCh-hHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHH-----HHHHHHHhhhcccccccccCCcc
Q psy14676 1482 QKDSIKLDD-DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVE-----TIVDALCSNMVSDKEQLRDISSI 1555 (1827)
Q Consensus 1482 ~~~~~~~~~-~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~-----~~v~~l~~~l~~~~~~~~~~~~~ 1555 (1827)
..+. ... -....+++.++.++.|++++|+.+|+.+|+.|... ..... ..+..+.. +..+ +|.
T Consensus 448 ~~~~--~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~-l~~~-------~~~ 515 (529)
T 1jdh_A 448 RDVH--NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTE-LLHS-------RNE 515 (529)
T ss_dssp TSHH--HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHH-GGGC-------SSH
T ss_pred cCch--HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHH-HhcC-------CCH
Confidence 0000 000 01234568999999999999999999999998843 11111 12233333 3333 333
Q ss_pred chhHHHHHHHhhh
Q psy14676 1556 GLKTVISVVYCLG 1568 (1827)
Q Consensus 1556 ~vRr~Al~~l~s~ 1568 (1827)
+||+.|..+|...
T Consensus 516 ~v~~~a~~aL~~l 528 (529)
T 1jdh_A 516 GVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988643
No 41
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.42 E-value=2e-10 Score=151.53 Aligned_cols=499 Identities=12% Similarity=0.072 Sum_probs=309.3
Q ss_pred hhhHHHHHHHHHHHhhhc----HHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhh--hhhhHHHHHHh
Q psy14676 832 CNLQLTIVALSHLVMSCN----LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH--IERVMPLILKY 905 (1827)
Q Consensus 832 ~~r~~Ai~aL~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~y--l~~ilP~ll~~ 905 (1827)
..|..|..||+-+-..+. .+.|.+.....+......++..-+-.+++++..++...++.-... -...+|.++..
T Consensus 219 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~L 298 (810)
T 3now_A 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAM 298 (810)
T ss_dssp THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHH
Confidence 478888889988888776 245555555444443333444444445666666665544432222 23689999999
Q ss_pred hcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcc
Q psy14676 906 SREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQS 985 (1827)
Q Consensus 906 l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~ 985 (1827)
++.+++.+++.|..++...... .+.+-++- ....+.|...+...++.++..+..+|... |..
T Consensus 299 l~s~~~~~q~~A~~al~~aa~~--~~~R~~I~-----------~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl-----~s~ 360 (810)
T 3now_A 299 ATTDDELQQRVACECLIAASSK--KDKAKALC-----------EQGVDILKRLYHSKNDGIRVRALVGLCKL-----GSY 360 (810)
T ss_dssp HHSSCHHHHHHHHHHHHHHTTS--HHHHHTTH-----------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH-----HTT
T ss_pred hCCCCHHHHHHHHHHHHHHcCC--cHHHHHHH-----------HcCcHHHHHHHcCCCHHHHHHHHHHHHHh-----ccc
Confidence 9999999998888887663321 12222211 11124445555544555555444332211 100
Q ss_pred cc-cchhhhhhh-hHHHHHHHHHhhhhcc--ccchhhHHHHHHhhhcccC--------CCCchHHHHHHhccCChhhHHH
Q psy14676 986 TS-TSGVAQLQQ-FVPAIWAQLFLHCECQ--EEGTRNVVAECLGKLTLID--------PSNLLPRLQESLKSNSALMRTT 1053 (1827)
Q Consensus 986 ~~-~~~~~~l~~-~~p~ll~~L~~~l~~~--e~~vR~~a~e~Lg~L~~~~--------~~~llP~L~~~L~s~~~~~R~~ 1053 (1827)
.. ......+.. -...+++.+.+.+.++ +.++|+-++++|..|+... -..++|.|.+.+++++......
T Consensus 361 ~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~ 440 (810)
T 3now_A 361 GGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYG 440 (810)
T ss_dssp TTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHH
T ss_pred cccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHH
Confidence 00 000011111 1234455555555555 7889999999999997552 1358999999999999999999
Q ss_pred HHHHHHHHHHhccc--------cccccccc----------hhhh-----hhhhhhhhHHHHHhhcCCchhhHHHHHHHHH
Q psy14676 1054 HQSNQTFNVIIQRN--------DIHNHNEE----------TSFI-----YSFYYFLLSPVIASVGDNFYKITAEALLVLQ 1110 (1827)
Q Consensus 1054 a~~~L~~l~~~~~~--------~l~~~~~~----------~~~~-----~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~ 1110 (1827)
+++.|+-+...... .+..|.+. .+.. .-.=...+|.+++.+..+.+.++.+|.++++
T Consensus 441 al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~ 520 (810)
T 3now_A 441 VVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLN 520 (810)
T ss_dssp HHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999977664311 01111110 0000 0001147899999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCcchhHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh--hh-hhhhhHHHHHHhh
Q psy14676 1111 QFVKVIRPLTSPSSYDFAPFTS--DIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYL--KS-ELPVCLPILLDRL 1185 (1827)
Q Consensus 1111 ~lv~~l~~~~~~~~~~~~~~l~--~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l--~~-~l~~lL~~Ll~~L 1185 (1827)
.++.. .+.+..+- ..++.++..+. +.+.++|+.|..+++.+........ .. .....+|.|++.|
T Consensus 521 NLA~d---------~~~r~~Vv~~Gaip~Lv~LL~--s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL 589 (810)
T 3now_A 521 AVCGL---------KELRGKVVQEGGVKALLRMAL--EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL 589 (810)
T ss_dssp HHHTS---------HHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTT
T ss_pred HHcCC---------HHHHHHHHHCCCHHHHHHHHc--cCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHh
Confidence 98731 11222221 24566666666 5678899999999999987643221 11 1234789999988
Q ss_pred hhhhh---HHHHHHHHHHHhcCCCccccc-hhh-hhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhH--HH
Q psy14676 1186 RNEIT---RLTTVKALTKIAASPLRIDLR-PIL-TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEML--NK 1258 (1827)
Q Consensus 1186 ~~e~t---R~~av~al~~ia~~~~~~dl~-p~~-~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~--~~ 1258 (1827)
..+.+ +..|+.||+.++..+. +.. .++ ..+++.|..++...+..+|.+++.+|+.++.... .....+ ..
T Consensus 590 ~~~~~~l~~~eAl~AL~NLa~~~d--~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~--~~~~~v~~~g 665 (810)
T 3now_A 590 QQDCTALENFESLMALTNLASMNE--SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED--VIKMFEGNND 665 (810)
T ss_dssp STTSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH--HHHHHHSSSS
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH--HHHHHHhccC
Confidence 75532 5689999999987531 111 122 3467888889988888999999999999876311 111122 14
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHH
Q psy14676 1259 VTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 1338 (1827)
Q Consensus 1259 ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~ 1338 (1827)
.++.|..++...|..++..+..+|+.++...+... ..+.. ....++.+...+.+++.++|..|+.
T Consensus 666 ~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~---------~~ii~------~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCC---------EKILA------IASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH---------HHHHT------STTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH---------HHHHH------HcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 67788889999999999999999999887443210 01111 0347788889999999999999999
Q ss_pred HHhhhhhhhh--h------hhHHHHHHhhhcC----chhhHHHHHHHHHHHh
Q psy14676 1339 TLGSIAVGNL--Q------QYVPFVLKEIENQ----PKRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1339 aLG~i~~~~l--~------~~LP~Il~~i~~~----~~~q~~~l~aL~Eii~ 1378 (1827)
+|+++..++- . ..+|.+.+.++.. ++.....+.+|.-++.
T Consensus 731 aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 9999765431 1 2445555555332 2334445566666554
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.41 E-value=4e-11 Score=159.15 Aligned_cols=452 Identities=13% Similarity=0.092 Sum_probs=302.7
Q ss_pred HHhhhhccccchhhHHHHHHhhhcccCC--------CCchHHHHHHhccC-ChhhHHHHHHHHHHHHHhccccccccccc
Q psy14676 1005 LFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSN-SALMRTTHQSNQTFNVIIQRNDIHNHNEE 1075 (1827)
Q Consensus 1005 L~~~l~~~e~~vR~~a~e~Lg~L~~~~~--------~~llP~L~~~L~s~-~~~~R~~a~~~L~~l~~~~~~~l~~~~~~ 1075 (1827)
|...+.+++..+|..+..+|+.++.... ...+|.+.+.|++. ++..|..++..|..+....... .
T Consensus 19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~-~----- 92 (644)
T 2z6h_A 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-L----- 92 (644)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH-H-----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-H-----
Confidence 3334467788999999999999986542 24689999999764 7889999999998665432210 0
Q ss_pred hhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcch-hH-HHHHHHHHHHHhhcCCCHHHHH
Q psy14676 1076 TSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAP-FT-SDIYQCTLVRLKAADIDQEVKE 1153 (1827)
Q Consensus 1076 ~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~-~l-~~l~~~ll~~L~~~D~d~eVre 1153 (1827)
. .+-...+|.++..++++.+.++..|+.++..+...- ..... +. ...++.++..+. +.+.+++.
T Consensus 93 --~--i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~--------~~~~~~v~~~g~i~~Lv~lL~--~~~~~~~~ 158 (644)
T 2z6h_A 93 --A--IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ--------EGAKMAVRLAGGLQKMVALLN--KTNVKFLA 158 (644)
T ss_dssp --H--HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--------TTHHHHHHHTTHHHHHHHGGG--CCCHHHHH
T ss_pred --H--HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc--------chhHHHHHHCCChHHHHHHHC--cCCHHHHH
Confidence 0 011257899999999999999999999999988541 11111 11 245677777776 55778999
Q ss_pred HHHHHHHHHHHHhhhhhhh-hhhhhHHHHHHhhhhh---hhHHHHHHHHHHHhcCCCccccch-hh-hhhHhhhhhhhcc
Q psy14676 1154 RAISCMGQIICNLGDYLKS-ELPVCLPILLDRLRNE---ITRLTTVKALTKIAASPLRIDLRP-IL-TDGIPILGSFLRK 1227 (1827)
Q Consensus 1154 ~Ai~alg~l~~~~g~~l~~-~l~~lL~~Ll~~L~~e---~tR~~av~al~~ia~~~~~~dl~p-~~-~~~l~~L~~~Lrk 1227 (1827)
.++.++..+.....+.-.. .-...++.|++.+++. ..+..+++++..++.... ... ++ ..+++.|..++++
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~---~~~~l~~~g~l~~L~~ll~~ 235 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS---NKPAIVEAGGMQALGLHLTD 235 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT---HHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc---cHHHHHHCCCHHHHHHHHhc
Confidence 9999999887532211000 1124577777777654 347788888888875422 122 22 2468889999988
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhccc
Q psy14676 1228 NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGR 1307 (1827)
Q Consensus 1228 ~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~ 1307 (1827)
.+..+|..++.+|..+....+.. .....+++.|..++.+.|..++..+..+|+.++...+.. ...+-
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~------~~~v~---- 302 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN------KMMVC---- 302 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH------HHHHH----
T ss_pred CCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH------HHHHH----
Confidence 88899999999999998764332 234478888999999999999999999999987643210 00000
Q ss_pred ccCCCchhhHHHHHHHhcCCC--CHhHHHHHHHHHhhhhhhh---------h--hhhHHHHHHhhhcC--chhhHHHHHH
Q psy14676 1308 HTDLTSVADLKQVILNAFTPT--SEEVKSAASYTLGSIAVGN---------L--QQYVPFVLKEIENQ--PKRQYLLLHS 1372 (1827)
Q Consensus 1308 ~~~~~~~~~l~~~~l~~~~~~--s~eVr~aAa~aLG~i~~~~---------l--~~~LP~Il~~i~~~--~~~q~~~l~a 1372 (1827)
....++.++..+.+. .++|+..|+.+||+++..+ + ...+|.+++.+... +..+....++
T Consensus 303 ------~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 303 ------QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp ------HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred ------HcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence 023556666666543 3799999999999986421 1 24678888888763 2456677788
Q ss_pred HHHHHhhccccccchhhhh--chHHHHHHHHhhh-----------------h-cCCchhHHHHHHHHHHHhhcc------
Q psy14676 1373 LKEIISWQSTSTSGVAQLQ--QFVPAIWAQLFLH-----------------C-ECQEEGTRNVVAECLGKLTLI------ 1426 (1827)
Q Consensus 1373 L~Eii~~~~~s~~g~~~L~--~~~~~i~~~L~~~-----------------~-~~~~e~vR~~aAecLGkL~~~------ 1426 (1827)
|+.+..... . ...+. ..++.|...+... . +...+.++..++.+|+.|+.-
T Consensus 377 L~nLa~~~~-~---~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~ 452 (644)
T 2z6h_A 377 IRNLALCPA-N---HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 452 (644)
T ss_dssp HHHHTTSGG-G---HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHccCHH-H---HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 877753110 0 11111 1333333333321 0 113466788888999988742
Q ss_pred -CCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc
Q psy14676 1427 -DPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE 1505 (1827)
Q Consensus 1427 -~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~ 1505 (1827)
.-...+|.|.+++.+.++.+|..+..+|..+..+ +..+ ..+. ....++.+..+++
T Consensus 453 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~------~~~~--------~~i~----------~~g~l~~L~~ll~ 508 (644)
T 2z6h_A 453 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------KEAA--------EAIE----------AEGATAPLTELLH 508 (644)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS------HHHH--------HHHH----------HTTCHHHHHHHTT
T ss_pred HHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------HHHH--------HHHH----------HcCChhHHHHHHc
Confidence 1246789999999999999999999998887642 1111 0000 1124578889999
Q ss_pred CCchHHHHHHHHHhhhhhhhh
Q psy14676 1506 DKNGEVQNLAVKCLGPLVNKV 1526 (1827)
Q Consensus 1506 D~~~~Vr~~a~~~Lg~L~~~l 1526 (1827)
++++.||..|+.+|+.+...-
T Consensus 509 ~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 509 SRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp CSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999998644
No 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.37 E-value=6.6e-11 Score=152.94 Aligned_cols=447 Identities=13% Similarity=0.084 Sum_probs=293.6
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhcccCC--------CCchHHHHHHhcc-CChhhHHHHHHHHHHHHHhccccccccc
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKS-NSALMRTTHQSNQTFNVIIQRNDIHNHN 1073 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~--------~~llP~L~~~L~s-~~~~~R~~a~~~L~~l~~~~~~~l~~~~ 1073 (1827)
+.|...+.++++.+|..+..+|+.++.... ...+|.+.+.+++ +++..|..++..|..+...... +..
T Consensus 20 ~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~--~~~- 96 (529)
T 1jdh_A 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--LLA- 96 (529)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH--HHH-
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh--HHH-
Confidence 344444567888999999999999875421 2478899999965 4788999999999976543210 000
Q ss_pred cchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHHH
Q psy14676 1074 EETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQEV 1151 (1827)
Q Consensus 1074 ~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~eV 1151 (1827)
+. -...+|.++..++++++.++..|++++..+...- ...+..+ ...++.++..+. +.+.++
T Consensus 97 -----i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~i~~~g~i~~L~~ll~--~~~~~~ 159 (529)
T 1jdh_A 97 -----IF--KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ--------EGAKMAVRLAGGLQKMVALLN--KTNVKF 159 (529)
T ss_dssp -----HH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHTHHHHHHHGGG--CCCHHH
T ss_pred -----HH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--------cchHHHHHHcCCHHHHHHHHh--cCCHHH
Confidence 00 1257889999999999999999999999988531 1112222 345677777776 567899
Q ss_pred HHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHhhhhh---hhHHHHHHHHHHHhcCCCccccchhh-hhhHhhhhhhh
Q psy14676 1152 KERAISCMGQIICNLGDYLKS--ELPVCLPILLDRLRNE---ITRLTTVKALTKIAASPLRIDLRPIL-TDGIPILGSFL 1225 (1827)
Q Consensus 1152 re~Ai~alg~l~~~~g~~l~~--~l~~lL~~Ll~~L~~e---~tR~~av~al~~ia~~~~~~dl~p~~-~~~l~~L~~~L 1225 (1827)
+..+..++..+.....+ ... .-...++.|++.+++. ..+..+.+++..++..+.. -..++ ..+++.|..++
T Consensus 160 ~~~~~~~L~~la~~~~~-~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g~~~~L~~ll 236 (529)
T 1jdh_A 160 LAITTDCLQILAYGNQE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH--HHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCccc--HHHHHHCCCHHHHHHHH
Confidence 99999999987642111 111 1123566666666543 3467788888888754321 11122 35688888999
Q ss_pred cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhc
Q psy14676 1226 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQI 1305 (1827)
Q Consensus 1226 rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgei 1305 (1827)
++.+..++..++.+|..+....+.. .....+++.|..++.+.|..++..++.+|+.++...+.. ...+.+
T Consensus 237 ~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~------~~~~~~- 306 (529)
T 1jdh_A 237 TDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN------KMMVCQ- 306 (529)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH------HHHHHH-
T ss_pred hCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH------HHHHHH-
Confidence 8888889999999999998764432 123578888999999999999999999999887643211 000001
Q ss_pred ccccCCCchhhHHHHHHHhcCC--CCHhHHHHHHHHHhhhhhhhh-----------hhhHHHHHHhhhcC--chhhHHHH
Q psy14676 1306 GRHTDLTSVADLKQVILNAFTP--TSEEVKSAASYTLGSIAVGNL-----------QQYVPFVLKEIENQ--PKRQYLLL 1370 (1827)
Q Consensus 1306 G~~~~~~~~~~l~~~~l~~~~~--~s~eVr~aAa~aLG~i~~~~l-----------~~~LP~Il~~i~~~--~~~q~~~l 1370 (1827)
...++.+++.+.+ ++++++..|+.+||+++.++- ...+|.+++.+.+. +..+...+
T Consensus 307 ---------~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~ 377 (529)
T 1jdh_A 307 ---------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp ---------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred ---------cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHH
Confidence 1245556666643 347999999999999865421 13578888888763 24566677
Q ss_pred HHHHHHHhhccccccchhhhhchH-HHHHHHHhhhhcCCc----------------------hhHHHHHHHHHHHhhcc-
Q psy14676 1371 HSLKEIISWQSTSTSGVAQLQQFV-PAIWAQLFLHCECQE----------------------EGTRNVVAECLGKLTLI- 1426 (1827)
Q Consensus 1371 ~aL~Eii~~~~~s~~g~~~L~~~~-~~i~~~L~~~~~~~~----------------------e~vR~~aAecLGkL~~~- 1426 (1827)
++|+.+... ......+. ..+++.|++.+.+.+ ++++..++.+|+.|+..
T Consensus 378 ~~l~nl~~~-------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 378 GLIRNLALC-------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHTTS-------GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHhcC-------hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 888887541 11111111 123333333332222 33444566777777641
Q ss_pred ------CCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHH
Q psy14676 1427 ------DPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKML 1500 (1827)
Q Consensus 1427 ------~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~l 1500 (1827)
.-...+|.|.+++.++++.+|..+..++..+..+ +..+ ..+ .....++.+
T Consensus 451 ~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~------~~~~--------~~i----------~~~~~~~~L 506 (529)
T 1jdh_A 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------KEAA--------EAI----------EAEGATAPL 506 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS------HHHH--------HHH----------HHTTCHHHH
T ss_pred hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC------HHHH--------HHH----------HHcCChHHH
Confidence 1235679999999999999999999999887632 1111 000 012345888
Q ss_pred HHhhcCCchHHHHHHHHHhhhh
Q psy14676 1501 LRLLEDKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1501 l~~l~D~~~~Vr~~a~~~Lg~L 1522 (1827)
..+++|+++.||..|..+|..+
T Consensus 507 ~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 507 TELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998875
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.5e-11 Score=142.12 Aligned_cols=202 Identities=18% Similarity=0.207 Sum_probs=168.3
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCC
Q psy14676 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGE 241 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~d 241 (1827)
|-+.+.+++.+-..|..++.++..++..||+-..+.+..+++.+.+.+..|+|
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~--------------------------- 70 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN--------------------------- 70 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC---------------------------
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC---------------------------
Confidence 34555566778888999999999999998875555667888888877632221
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCC
Q psy14676 242 DEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSP 321 (1827)
Q Consensus 242 de~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~ 321 (1827)
.+||.+|+++++.++...++.+.++.+.++|.+..++++....||.++..++.+++...
T Consensus 71 ----------------~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----- 129 (242)
T 2qk2_A 71 ----------------VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST----- 129 (242)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----
Confidence 37999999999999999888889999999999999999999999999999999988421
Q ss_pred CCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC-cc-cccCchhhHHHHHHHHhhhh
Q psy14676 322 LTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTL-PG-CLAPSLPALIPDVTSVAEWD 399 (1827)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl-~~-~l~~~l~~Llp~i~~~L~~~ 399 (1827)
.++.+++.+...|+++++.+|..++.+++.+.... |. .+.+|++.++|.+..++.
T Consensus 130 ---------------------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~-- 186 (242)
T 2qk2_A 130 ---------------------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN-- 186 (242)
T ss_dssp ---------------------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT--
T ss_pred ---------------------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc--
Confidence 24678888899999999999999999999987776 44 457899999999999983
Q ss_pred hcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhh
Q psy14676 400 EEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPP 469 (1827)
Q Consensus 400 ~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~ 469 (1827)
|.+|.||.+|.++++.++...| +.|.+|++.+-+.
T Consensus 187 -----------------------------------D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~ 222 (242)
T 2qk2_A 187 -----------------------------------EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPL 222 (242)
T ss_dssp -----------------------------------SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHH
T ss_pred -----------------------------------CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHH
Confidence 4579999999999999999999 5688887776443
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.33 E-value=1.2e-09 Score=143.42 Aligned_cols=432 Identities=13% Similarity=0.108 Sum_probs=282.9
Q ss_pred HHHHHhhhhccccchhhHHHHHHhhhcccC-CCCchHHHHHHh--ccCChhhHHHHHHHHHHHHHhccccccccccchhh
Q psy14676 1002 WAQLFLHCECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESL--KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSF 1078 (1827)
Q Consensus 1002 l~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L--~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~ 1078 (1827)
++.+.+-+.++.+.+|..|..+||.+.... .+.++|.+.+++ .+.++.+|..|+.++..++...++.+.+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~------- 185 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM------- 185 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-------
Confidence 344555567788888988999999886432 356899999999 8889999999999999777777665442
Q ss_pred hhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCC-----------
Q psy14676 1079 IYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADI----------- 1147 (1827)
Q Consensus 1079 ~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~----------- 1147 (1827)
+.+++.+...+.|+++.|...|+.++.++... + ...+.++++.++..+..-+...+.
T Consensus 186 -----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~-~------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 186 -----GDWTSRVVHLLNDQHLGVVTAATSLITTLAQK-N------PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp -----CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-C------HHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred -----hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh-C------hHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 15788888999999999999999999998753 1 123445555555544333322111
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh-----------hhh--hhHHHHHHHHHHHhcCCCccccchhh
Q psy14676 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRL-----------RNE--ITRLTTVKALTKIAASPLRIDLRPIL 1214 (1827)
Q Consensus 1148 d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L-----------~~e--~tR~~av~al~~ia~~~~~~dl~p~~ 1214 (1827)
++-.+-..+..++.+...-.......+..+++.++..+ +|. ..-.++++++-.+... .+++
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~------~~~~ 327 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE------PNLL 327 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC------HHHH
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc------HHHH
Confidence 34455555555554432111122233444555555432 122 3367777777666421 3466
Q ss_pred hhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCcc
Q psy14676 1215 TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNAL 1293 (1827)
Q Consensus 1215 ~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~ 1293 (1827)
..++..|..++...+..+|..++.+|..++...+. .+.+......+...+. |.|..++..++++|..++..
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----- 399 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----- 399 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-----
Confidence 77888899999877889999999999999876532 2333444444555667 99999999999998877642
Q ss_pred chhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh---hhhhhHHHHHHhhhcCch-hhHHH
Q psy14676 1294 VEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEIENQPK-RQYLL 1369 (1827)
Q Consensus 1294 ~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~---~l~~~LP~Il~~i~~~~~-~q~~~ 1369 (1827)
+....++..+...+.+.+.+.|..+..++|.++.. ....|+.++++.+...+. ...-+
T Consensus 400 ------------------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev 461 (621)
T 2vgl_A 400 ------------------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEV 461 (621)
T ss_dssp ------------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHH
T ss_pred ------------------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHH
Confidence 12356777777778788899999999999987753 455688888888765321 22234
Q ss_pred HHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCC--chhHHHHHHHHHHHhhccC-------CCcchHHHHHhhh
Q psy14676 1370 LHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQ--EEGTRNVVAECLGKLTLID-------PSNLLPRLQESLK 1440 (1827)
Q Consensus 1370 l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~--~e~vR~~aAecLGkL~~~~-------p~~~lP~L~~~l~ 1440 (1827)
+..+..++.. ...++.|. ...+++.+.+. .+.+-.+++.++|.-+..- |..++..+.+.+.
T Consensus 462 ~~~l~~ii~~-------~~~~~~~~---~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~ 531 (621)
T 2vgl_A 462 WYRVIQIVIN-------RDDVQGYA---AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH 531 (621)
T ss_dssp HHHHHHHHGG-------GCSCHHHH---HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-------ChhHHHHH---HHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc
Confidence 6677777752 23344432 23344443322 2445567789999987532 2244556666677
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc--CCchHHHHHHHHH
Q psy14676 1441 SNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE--DKNGEVQNLAVKC 1518 (1827)
Q Consensus 1441 ~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~--D~~~~Vr~~a~~~ 1518 (1827)
.+++.+|..+++|+-.+....+ .++ ..+...|-.... |.+++||..|..-
T Consensus 532 ~~~~~v~~~~Lta~~Kl~~~~p-----~~~-----------------------~~i~~~l~~~~~~~~~d~evrdRA~~y 583 (621)
T 2vgl_A 532 LCSVPTRALLLSTYIKFVNLFP-----EVK-----------------------ATIQDVLRSDSQLKNADVELQQRAVEY 583 (621)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCG-----GGH-----------------------HHHHHHHSSHHHHSCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCh-----HHH-----------------------HHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 8899999999998877765332 111 122233323444 9999999998876
Q ss_pred hhhh
Q psy14676 1519 LGPL 1522 (1827)
Q Consensus 1519 Lg~L 1522 (1827)
+.-+
T Consensus 584 ~~Ll 587 (621)
T 2vgl_A 584 LRLS 587 (621)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 46
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=7.6e-11 Score=136.50 Aligned_cols=196 Identities=12% Similarity=0.171 Sum_probs=164.9
Q ss_pred CchHHHHHHHHHHHHH-HHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc-CCCC-chhHH
Q psy14676 3 SDKEQLRDISSIGLKT-VISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFG-ALLP-SFHFV 79 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lkt-vi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~-~~l~-~~~~~ 79 (1827)
|.+=+-|..+..+|.. +++.-|.-... ..-...++..|...+.++.++.++..|+.+|+.+++.++ +.+. +|+..
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~--~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKST--SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCT--TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccC--cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 4555678888888888 87653331100 001346677888888667799999999999999999999 9999 89999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---hh
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG---HR 152 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~---~~ 152 (1827)
+++.++..+.+..+.||.+|..|+..+++.+++. .+..+++.++..|.+. ++.+|..++.+++.++...+ ..
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchh
Confidence 9999999999999999999999999999998532 2567888888888654 68999999999999999988 67
Q ss_pred hHHhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCc-cccchHHH
Q psy14676 153 FAEHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE-ITPHIQSI 201 (1827)
Q Consensus 153 ~~p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e-~~p~l~~i 201 (1827)
|.+|+ +.++|.+.+.+.+.+.++|+.|..++..+.+..|++ |.||++.+
T Consensus 184 l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999874 88988764
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.26 E-value=6.7e-11 Score=136.94 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=160.3
Q ss_pred cchhhHHHHHHHHHHH-HHHHcCCch--hhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q psy14676 255 DMSWKVRRAAAKCLEA-IIATRRDLI--GDMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQM 330 (1827)
Q Consensus 255 D~sWkVRraAak~L~~-l~~~~~~~l--~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~ 330 (1827)
...|+-|++|..+|.. ++...++.. ..-|..++..|.+.+ ++.+..||..|+.+++.+++..+.
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~------------ 94 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT------------ 94 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT------------
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc------------
Confidence 4579999999999999 887766654 345667888999999 899999999999999999954320
Q ss_pred CCCCChHhhHH-hhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-cCchhhHHHHHHHHhhhhhcccCCCCC
Q psy14676 331 DQEDSPLCLLS-TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL-APSLPALIPDVTSVAEWDEEEGLGGEG 408 (1827)
Q Consensus 331 ~~~~~~~~~l~-~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~~~l~~Llp~i~~~L~~~~~~~~~~~~ 408 (1827)
..+. ++...++|.++..++|+.+.||.++...+..++...+... ..|++.+++.+...++
T Consensus 95 -------~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~----------- 156 (249)
T 2qk1_A 95 -------PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK----------- 156 (249)
T ss_dssp -------TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT-----------
T ss_pred -------ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc-----------
Confidence 1245 7888999999999999999999999999999998875422 2348999999999983
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh---hhhhhhH-HhhhhhHHHhhcchhhhhHHH
Q psy14676 409 GGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR---DLIGDMY-RLVSPPLIARFKEREENVKSD 484 (1827)
Q Consensus 409 ~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~---~~f~~~~-~~l~~~L~~~~~d~~~~Vr~~ 484 (1827)
..+|++|.+++.+|..++.+.+ ..|.+|+ +.++|.+.+.+.|....||.+
T Consensus 157 --------------------------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~a 210 (249)
T 2qk1_A 157 --------------------------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTI 210 (249)
T ss_dssp --------------------------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHH
T ss_pred --------------------------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2489999999999999999988 5789999 999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy14676 485 IFHAYMALLKGTR 497 (1827)
Q Consensus 485 a~~~l~~L~~~~g 497 (1827)
|+.++..+.+.+|
T Consensus 211 A~~~l~~i~~~vG 223 (249)
T 2qk1_A 211 GFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999888
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.18 E-value=3.1e-09 Score=136.75 Aligned_cols=387 Identities=12% Similarity=0.115 Sum_probs=252.7
Q ss_pred hhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHH-----HHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14676 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSD-----IYQCTLVRLKAADIDQEVKERAISCM 1159 (1827)
Q Consensus 1085 ~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~-----l~~~ll~~L~~~D~d~eVre~Ai~al 1159 (1827)
.-++.+++.++..++....+|...+..+... .. .|-++. +++.++.-|. .+.+++++..|..||
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~---------e~-~ppi~~ii~~G~ip~LV~lL~-~~~~~~lq~~Aa~aL 125 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSR---------EK-QPPIDNIIRAGLIPKFVSFLG-KTDCSPIQFESAWAL 125 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTC---------SS-CCCHHHHHHTTHHHHHHHHTT-CTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---------CC-CchHHHHHHCCCHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 3467888889999999998888887776521 11 122222 3555666665 355689999999999
Q ss_pred HHHHHHhhhhhhhhh-hhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhh--hhhHhhhhhhhcchh-----
Q psy14676 1160 GQIICNLGDYLKSEL-PVCLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPIL--TDGIPILGSFLRKNQ----- 1229 (1827)
Q Consensus 1160 g~l~~~~g~~l~~~l-~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~--~~~l~~L~~~Lrk~~----- 1229 (1827)
+.++....+.-..-. ...+|.|++.|++++ .|..|+.+|+.|+.... .....+ ..+++.|..+++..+
T Consensus 126 ~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~--~~r~~v~~~G~i~~Ll~lL~~~~~~~~~ 203 (510)
T 3ul1_B 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS--AFRDLVIKHGAIDPLLALLAVPDLSTLA 203 (510)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH--HHHHHHHHcCChHHHHHHHHhccchhhh
Confidence 999864332211112 237888999887654 49999999999986421 111111 345777888877543
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhccccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHT 1309 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~ 1309 (1827)
..+...+..+|..+.........-..+..+++.|..++.+.|..++..++.+|+.++...+.. . ..+
T Consensus 204 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~------~-------~~i 270 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER------I-------EMV 270 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH------H-------HHH
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhh------H-------HHH
Confidence 234556777888877654443344566789999999999999999999999999887532210 0 000
Q ss_pred CCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhh
Q psy14676 1310 DLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQ 1389 (1827)
Q Consensus 1310 ~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~ 1389 (1827)
....+++.++..+.+++..++..|+.+||+++.++-.. .+ .++.. | .
T Consensus 271 ---~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~--------------~~--------~i~~~------g--~ 317 (510)
T 3ul1_B 271 ---VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ--------------TQ--------KVIDA------G--A 317 (510)
T ss_dssp ---HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH--------------HH--------HHHHT------T--G
T ss_pred ---HhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH--------------HH--------HHhhc------c--c
Confidence 01246778888899999999999999999987543110 00 01110 0 1
Q ss_pred hhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhc
Q psy14676 1390 LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461 (1827)
Q Consensus 1390 L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~ 1461 (1827)
+ +.|...+.+.++.+|..++.+|+.|+..++ ..++|.|.+++++.++.+|..+..||..+....
T Consensus 318 l--------~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 318 L--------AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp G--------GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred h--------HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 1 122233345567788889999999886553 367899999999999999999999999887643
Q ss_pred CCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhh----hhHHHHHHH
Q psy14676 1462 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKE----FQVETIVDA 1537 (1827)
Q Consensus 1462 ~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~----~~~~~~v~~ 1537 (1827)
.. .... ++ +...+++.|+.+|..+|+.++..++.+|..+.+.-.. +....++..
T Consensus 390 ~~---~~~~---------~L----------~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee 447 (510)
T 3ul1_B 390 TV---EQIV---------YL----------VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 447 (510)
T ss_dssp CH---HHHH---------HH----------HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CH---HHHH---------HH----------HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH
Confidence 21 1111 11 1123568999999999999999999999998864321 223333332
Q ss_pred -----HHhhhcccccccccCCccchhHHHHHHHhh
Q psy14676 1538 -----LCSNMVSDKEQLRDISSIGLKTVISVVYCL 1567 (1827)
Q Consensus 1538 -----l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s 1567 (1827)
.+..++.. +|.+|+..|...+..
T Consensus 448 ~ggl~~ie~Lq~~-------~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 448 CGGLDKIEALQRH-------ENESVYKASLNLIEK 475 (510)
T ss_dssp TTHHHHHHHGGGC-------SSHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcC-------CCHHHHHHHHHHHHH
Confidence 12333332 222788887776643
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.18 E-value=4.3e-09 Score=136.07 Aligned_cols=400 Identities=11% Similarity=0.109 Sum_probs=262.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
-++.++..+.++++.++..|+.++..+...-... .. ...++.|++.|..++++.++..++.+|+.++......-.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566788889999999999999998876432221 11 235788888887777789999999999999976544322
Q ss_pred HhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch--HHHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 155 EHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI--QSITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 155 p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l--~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
..+ ...+|.+++.++.+++++|+.|..||..++...++ .+..+ ...++.++..+... +
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i~~Ll~lL~~~-~----------------- 217 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAIDPLLALLAVP-D----------------- 217 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHTTCSS-C-----------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCcHHHHHHHhcc-c-----------------
Confidence 222 36889999999999999999999999888764432 11111 12456666655321 0
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCc-hhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-IGDMYRLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~-l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
.......+.+.++.+|..+.....+. -......++|.|...+++.+++|+..++.++.
T Consensus 218 ---------------------~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 218 ---------------------LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp ---------------------GGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred ---------------------hhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 01122356777888888877653321 12245678999999999999999999999998
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccC-chhhHH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAP-SLPALI 389 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~-~l~~Ll 389 (1827)
.+..... .....+. -..++|.+.+.|.++++.++..+...++.++..-+..-.. .-...+
T Consensus 277 ~l~~~~~-----------------~~~~~v~--~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l 337 (529)
T 3tpo_A 277 YLTDGPN-----------------ERIEMVV--KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 337 (529)
T ss_dssp HHHSSCH-----------------HHHHHHH--TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred Hhhhhhh-----------------hhHHHHH--hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccH
Confidence 8873210 0111111 1234667778888999999999998888876432211000 001234
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhhhh
Q psy14676 390 PDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSP 468 (1827)
Q Consensus 390 p~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~ 468 (1827)
+.+..++.+ ....+|..|+.+|+.++..........+ ..++|
T Consensus 338 ~~L~~LL~~-------------------------------------~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~ 380 (529)
T 3tpo_A 338 AVFPSLLTN-------------------------------------PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 380 (529)
T ss_dssp GGHHHHTTC-------------------------------------SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHcC-------------------------------------CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHH
Confidence 555566621 2345899999999999864443333222 24788
Q ss_pred hHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHH
Q psy14676 469 PLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLA 548 (1827)
Q Consensus 469 ~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~ 548 (1827)
.++..+.+....+|..|..++..+...... .-+..+ ...++++
T Consensus 381 ~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~---------------------------~~~~~l----------~~~g~i~ 423 (529)
T 3tpo_A 381 FLVGVLSKADFKTQKAAAWAITNYTSGGTV---------------------------EQIVYL----------VHCGIIE 423 (529)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---------------------------HHHHHH----------HHTTCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCH---------------------------HHHHHH----------HHCcCHH
Confidence 999999999999999999888887643110 000111 1236788
Q ss_pred HHHHhhcCCCccccccchHHHHHHHhhhc-cccchhhHHHH-----HHHHHHHhhcchhhHHHHHHHhhh
Q psy14676 549 LLRELMTSSDKDFRFMATNDLMSELQKDS-IKLDDDSERKV-----VKMLLRLLEDKNGEVQNLAVKCLG 612 (1827)
Q Consensus 549 ~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~-~~~d~~~~~~i-----~~~l~~~l~D~~~eV~~~A~~~lg 612 (1827)
.|..++..+|++++..++..|...++.+- ......+...+ ++.|..+....+.+|+..|.+.|.
T Consensus 424 ~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 424 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 89999999999999998888877765321 11111121112 455667778888999998877653
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.17 E-value=3.4e-09 Score=136.32 Aligned_cols=388 Identities=12% Similarity=0.115 Sum_probs=242.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
|++.+.+--+..+++.+.+.=..+ +...-+-.-++|.|++.+.+..++.++.+|..+|+.++..-...... ...-.+
T Consensus 68 s~d~~~q~~a~~~~rklls~e~~p--pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI 145 (510)
T 3ul1_B 68 SNNLESQLQATQAARKLLSREKQP--PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 145 (510)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSCC--CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCc--hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence 444555555556666655432211 23333444589999999987668999999999999998643221111 112367
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---hHHH-HHHHHHHHhccCCC----CHHHHHHHHHHHHHHHHHhc-hh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL---QLYT-KLIDFLLEGLTTNK----STSTNRTYIQCFAAICRQAG-HR 152 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~-~l~~~ll~~L~~~~----~~~~r~~ai~~l~~la~~~~-~~ 152 (1827)
+.|+..|.+++..||+.|+.||++++...+. .... ..++.++..|.... .....+.++.++..+++... ..
T Consensus 146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~ 225 (510)
T 3ul1_B 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence 8899999999999999999999999875432 1111 23566777665422 23467778888888887542 22
Q ss_pred hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
-......++|.+.+.+..++++++..|..++..+....+...... -..+++.+.+++..
T Consensus 226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-------------------- 285 (510)
T 3ul1_B 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------------- 285 (510)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--------------------
T ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--------------------
Confidence 233567899999999999999999888887766654222111100 12345666665532
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
.++.++..++.+|+.++.........+. ..++|.|...+++.++++|..++.+++
T Consensus 286 ------------------------~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 286 ------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ------------------------CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1247999999999998754332222222 246788888899999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch--hhH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL--PAL 388 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l--~~L 388 (1827)
.+..... .....+.. ..++|.++..|++.+.++|..|...+..++......--.++ ...
T Consensus 342 nl~a~~~-----------------~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~ 402 (510)
T 3ul1_B 342 NITAGRQ-----------------DQIQQVVN--HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402 (510)
T ss_dssp HHTTSCH-----------------HHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHcCcH-----------------HHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCC
Confidence 8873210 01111111 24678888888999999999777777777654321100000 234
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-----hhhhhhH
Q psy14676 389 IPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-----DLIGDMY 463 (1827)
Q Consensus 389 lp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-----~~f~~~~ 463 (1827)
++.+..+|.. ..++++..++.+|..+++... ..+..+|
T Consensus 403 i~~L~~LL~~-------------------------------------~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 445 (510)
T 3ul1_B 403 IEPLMNLLSA-------------------------------------KDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445 (510)
T ss_dssp HHHHHHGGGC-------------------------------------SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcC-------------------------------------CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHH
Confidence 6667777731 235688999999998886432 1222233
Q ss_pred Hh--hhhhHHHhhcchhhhhHHHHHHHHHHH
Q psy14676 464 RL--VSPPLIARFKEREENVKSDIFHAYMAL 492 (1827)
Q Consensus 464 ~~--l~~~L~~~~~d~~~~Vr~~a~~~l~~L 492 (1827)
+. -+..+...-.+...+|++.|+..+...
T Consensus 446 ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 446 EECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 32 233443433445678888888655444
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.17 E-value=6.2e-09 Score=134.61 Aligned_cols=388 Identities=12% Similarity=0.112 Sum_probs=243.3
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
|++.+.+--+..+++.+.+.=..+ .....+..-++|.|++.+....++.++.+|+.+|..++..-...... ...-.+
T Consensus 87 s~d~~~q~~a~~~~rklLs~~~~~--~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gai 164 (529)
T 3tpo_A 87 SNNLESQLQATQAARKLLSREKQP--PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 164 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSSCC--CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCc--hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 334444444555565554322221 23334556689999999977668999999999999998653321111 112367
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---hHHH-HHHHHHHHhccCCC----CHHHHHHHHHHHHHHHHHhc-hh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL---QLYT-KLIDFLLEGLTTNK----STSTNRTYIQCFAAICRQAG-HR 152 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~-~l~~~ll~~L~~~~----~~~~r~~ai~~l~~la~~~~-~~ 152 (1827)
+.|+..|.++++.||..|+.||++++...+. .... ..++.++..|.... .....+.++.++..+++... ..
T Consensus 165 p~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~ 244 (529)
T 3tpo_A 165 PAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 244 (529)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchh
Confidence 8888999999999999999999999865432 1111 13567777775422 23467778888888887542 22
Q ss_pred hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
-......++|.+.+.+..++++++..|..++..+....+...... -..++|.+.+++..
T Consensus 245 ~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-------------------- 304 (529)
T 3tpo_A 245 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------------- 304 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--------------------
T ss_pred hHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--------------------
Confidence 233467899999999999999999888888876664332111100 12345666665532
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhh-HHhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDM-YRLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~-~~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
.++.++..++.+|+.++...+.....+ -..++|.|...+++.++++|..++.+++
T Consensus 305 ------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 305 ------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp ------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred ------------------------CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 124799999999999885433322222 2357888999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch--hhH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL--PAL 388 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l--~~L 388 (1827)
.+..... .....+.. ..++|.++..|++.+.++|..|...+..++......--.++ ..+
T Consensus 361 nl~~~~~-----------------~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~ 421 (529)
T 3tpo_A 361 NITAGRQ-----------------DQIQQVVN--HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421 (529)
T ss_dssp HHHTSCH-----------------HHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred HHhcccH-----------------HHHHHHHh--cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence 8873210 01111111 23677888888899999999766677777654321100011 134
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-----hhhhhhH
Q psy14676 389 IPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-----DLIGDMY 463 (1827)
Q Consensus 389 lp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-----~~f~~~~ 463 (1827)
+|.+..+|.. ..++++..++.+|..+.+... ..+..+|
T Consensus 422 i~~L~~LL~~-------------------------------------~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 464 (529)
T 3tpo_A 422 IEPLMNLLSA-------------------------------------KDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 464 (529)
T ss_dssp HHHHHHGGGC-------------------------------------SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcC-------------------------------------CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHH
Confidence 6677777731 235688899999988875432 1222223
Q ss_pred Hh--hhhhHHHhhcchhhhhHHHHHHHHHHH
Q psy14676 464 RL--VSPPLIARFKEREENVKSDIFHAYMAL 492 (1827)
Q Consensus 464 ~~--l~~~L~~~~~d~~~~Vr~~a~~~l~~L 492 (1827)
+. -+..+.....+...+|+..|+..+...
T Consensus 465 ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 465 EECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 22 133333333444678888887655444
No 52
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.12 E-value=2.6e-09 Score=126.05 Aligned_cols=240 Identities=12% Similarity=0.047 Sum_probs=177.3
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
.-+|.+.+.|+++++..|..++..|+.+.. +..++.++..+.|+++.+|..|..+++.+.
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 357888888888889999999998886531 246788889999999999999988887753
Q ss_pred HHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--H
Q psy14676 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--R 1191 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R 1191 (1827)
. .. ..+..+++.+...+. +|.+..||..|+.++|.+....+ .+.+..++.|...+++++. |
T Consensus 83 ~---------~~---~~~~~l~~~L~~~~~-~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR 145 (280)
T 1oyz_A 83 I---------CK---KCEDNVFNILNNMAL-NDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVR 145 (280)
T ss_dssp C---------CT---TTHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHH
T ss_pred c---------cc---ccchHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHH
Confidence 1 01 123445454443322 48899999999999999764321 2345678888888876654 9
Q ss_pred HHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCC
Q psy14676 1192 LTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESD 1271 (1827)
Q Consensus 1192 ~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D 1271 (1827)
..|+.+++.+.. +..++.|...+++.+..+|..++.+|+.+-. -++ .+++.|..++.|.|
T Consensus 146 ~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----~~~----~~~~~L~~~l~d~~ 205 (280)
T 1oyz_A 146 RATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKY-----DNS----DIRDCFVEMLQDKN 205 (280)
T ss_dssp HHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC-----CCH----HHHHHHHHHTTCSC
T ss_pred HHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc-----CcH----HHHHHHHHHhcCCC
Confidence 999999997753 2367888888899999999999999987621 122 35677778889999
Q ss_pred hhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhh
Q psy14676 1272 LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQY 1351 (1827)
Q Consensus 1272 ~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~ 1351 (1827)
..++..++..|+.+ | .+..++.++..+.++ +||..|+.+||.+|. +..
T Consensus 206 ~~vR~~A~~aL~~~--------------------~-------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~~~ 253 (280)
T 1oyz_A 206 EEVRIEAIIGLSYR--------------------K-------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD---KTL 253 (280)
T ss_dssp HHHHHHHHHHHHHT--------------------T-------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---GGG
T ss_pred HHHHHHHHHHHHHh--------------------C-------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---hhh
Confidence 99999888777643 2 144667778888774 499999999999986 467
Q ss_pred HHHHHHhhhcC
Q psy14676 1352 VPFVLKEIENQ 1362 (1827)
Q Consensus 1352 LP~Il~~i~~~ 1362 (1827)
+|.+.+.+++.
T Consensus 254 ~~~L~~~l~~~ 264 (280)
T 1oyz_A 254 LPVLDTMLYKF 264 (280)
T ss_dssp HHHHHHHHTTS
T ss_pred hHHHHHHHhcC
Confidence 88888877653
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.10 E-value=3.7e-09 Score=124.75 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=183.5
Q ss_pred hHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChH
Q psy14676 1177 CLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTE 1254 (1827)
Q Consensus 1177 lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~ 1254 (1827)
.++.|++.+++++ .|..|+++|+.+.. +..++.|...+++.+..+|..++.+|+.+.. .+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~------~~~ 86 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI------CKK 86 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC------CTT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------ccc
Confidence 5667777777554 49999999998862 4567888889998899999999999986521 112
Q ss_pred hHHHHHHHhh-hhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHH
Q psy14676 1255 MLNKVTVELA-PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVK 1333 (1827)
Q Consensus 1255 ~~~~ll~~L~-~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr 1333 (1827)
.+..+++.|. .+++|.|..++..++.+|+.+....+. ..+.+++.+...+.++++.||
T Consensus 87 ~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~---------------------~~~~~~~~L~~~l~d~~~~vR 145 (280)
T 1oyz_A 87 CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI---------------------YSPKIVEQSQITAFDKSTNVR 145 (280)
T ss_dssp THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG---------------------GHHHHHHHHHHHTTCSCHHHH
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc---------------------ccHHHHHHHHHHhhCCCHHHH
Confidence 2444555554 356889999999999999887653321 125688899999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhH
Q psy14676 1334 SAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGT 1412 (1827)
Q Consensus 1334 ~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~v 1412 (1827)
.+|+.+||.++. +..+|.+.+.+.+ ++..++...++|+.+-. . -+.+++.|.+.+.+++..+
T Consensus 146 ~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~-----------~~~~~~~L~~~l~d~~~~v 208 (280)
T 1oyz_A 146 RATAFAISVIND---KATIPLLINLLKDPNGDVRNWAAFAININKY---D-----------NSDIRDCFVEMLQDKNEEV 208 (280)
T ss_dssp HHHHHHHHTC------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC---C-----------CHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc---C-----------cHHHHHHHHHHhcCCCHHH
Confidence 999999999875 3467888887766 34567778888877521 0 1344566666666778889
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhH
Q psy14676 1413 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDS 1492 (1827)
Q Consensus 1413 R~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~ 1492 (1827)
|..++.+||++. ....+|.|.+.+++++ +|..++.|+..+-..
T Consensus 209 R~~A~~aL~~~~---~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-------------------------------- 251 (280)
T 1oyz_A 209 RIEAIIGLSYRK---DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK-------------------------------- 251 (280)
T ss_dssp HHHHHHHHHHTT---CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------------------------------
T ss_pred HHHHHHHHHHhC---CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------------------------------
Confidence 999999999987 4567899999998765 788888888776321
Q ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHhhh
Q psy14676 1493 ERKVVKMLLRLLED-KNGEVQNLAVKCLGP 1521 (1827)
Q Consensus 1493 ~~~l~~~ll~~l~D-~~~~Vr~~a~~~Lg~ 1521 (1827)
..+|.+..++++ +++.++..++..+.+
T Consensus 252 --~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 --TLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp --GGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred --hhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 134777777754 567777777777654
No 54
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.03 E-value=3.2e-06 Score=115.56 Aligned_cols=404 Identities=12% Similarity=0.103 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHhhCCCCChh-hh--------hhH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc
Q psy14676 8 LRDISSIGLKTVISELPLGSNA-LA--------ANV---CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS 75 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~-~~--------~~v---~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~ 75 (1827)
.+++.-.-|+.+..|+-..... +. ..+ ...+++.+...+++..++++...++.+|+..++-..... -
T Consensus 165 ~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~-i 243 (1073)
T 3gjx_A 165 LCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY-I 243 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-H
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHH-h
Confidence 3445555677777775432110 00 011 133445455556556678888888888887765442110 0
Q ss_pred hhHHHHHHH-hhhcCCCCHHHHHHHHHHHHHHHHh-hc--hhHHHHHHHHHHHhc----c------------CCCCHHHH
Q psy14676 76 FHFVILTAL-LPQLSSPRQAVRKRTIVALSHLVMS-CN--LQLYTKLIDFLLEGL----T------------TNKSTSTN 135 (1827)
Q Consensus 76 ~~~~il~~l-l~~L~~~~~~VRk~Ai~aL~~l~~~-~~--~~~~~~l~~~ll~~L----~------------~~~~~~~r 135 (1827)
....+++.+ ...|. ++.+|..|+.||..++.. .+ ++.+..++..++..+ . .+.+.+.-
T Consensus 244 ~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~ 321 (1073)
T 3gjx_A 244 FETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFI 321 (1073)
T ss_dssp HSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHH
T ss_pred ccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHH
Confidence 123577766 46664 578999999999998874 22 122333444433222 1 11223444
Q ss_pred HHHHHHHHHHHHHhch------hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHh----CCC-------------
Q psy14676 136 RTYIQCFAAICRQAGH------RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQR----CPK------------- 192 (1827)
Q Consensus 136 ~~ai~~l~~la~~~~~------~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~----~p~------------- 192 (1827)
+..+..+.++.+.... .+.+++...+..++.+...++.|+-+.|+..+-.|... .|.
T Consensus 322 ~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~ 401 (1073)
T 3gjx_A 322 QNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQH 401 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 5555666666554322 34556666677777777778888888887766555442 110
Q ss_pred --------ccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHH
Q psy14676 193 --------EITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAA 264 (1827)
Q Consensus 193 --------e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraA 264 (1827)
.+.|++..++..+..-|.+.++....++| ++|--.++-- |-.+-..+++.
T Consensus 402 ~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e---------------------~ge~~re~~~-d~~~~~ly~~m 459 (1073)
T 3gjx_A 402 FDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVEND---------------------QGEVVREFMK-DTDSINLYKNM 459 (1073)
T ss_dssp SCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECS---------------------SSCEEEEECS-SCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcc---------------------cchHHHHHHh-hcchHHHHHHH
Confidence 14566777888888888775433211100 0000001000 01123456666
Q ss_pred HHHHHHHHHHcCCchhhhHHhhhHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHh
Q psy14676 265 AKCLEAIIATRRDLIGDMYRLVSPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLST 342 (1827)
Q Consensus 265 ak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~--e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 342 (1827)
..||..+..-.+ ...+..+.+.|.+.+. +..|..+.+++.++|++..+.. ...-.+
T Consensus 460 rd~L~~lt~l~~---~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~-------------------~~~E~~ 517 (1073)
T 3gjx_A 460 RETLVYLTHLDY---VDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMH-------------------EEDEKR 517 (1073)
T ss_dssp HHHHHHHHHHCH---HHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSC-------------------HHHHHH
T ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCC-------------------cccccc
Confidence 677765553322 2445566676766654 4569999999999998873211 012357
Q ss_pred hhHHHHHHHHHHhccC-----CHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcc
Q psy14676 343 QVPSLVKALQCQLREK-----SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEE 417 (1827)
Q Consensus 343 ~lp~Iv~~l~~~L~d~-----~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ 417 (1827)
.+|.+++.++.....+ .+.++.+.+-++++..+.+-.. .++++.++..+.+.+.+
T Consensus 518 ~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~~L~~~m~~------------------- 577 (1073)
T 3gjx_A 518 FLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVNKLFEFMHE------------------- 577 (1073)
T ss_dssp HHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTC-------------------
T ss_pred hHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHHHHHHHHhc-------------------
Confidence 8999999999876443 3445554433666666554321 23555555555555421
Q ss_pred cCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhh--------hhhHHhhhhhHHHhhcchhhhhHHHHHHHH
Q psy14676 418 EDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLI--------GDMYRLVSPPLIARFKEREENVKSDIFHAY 489 (1827)
Q Consensus 418 ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f--------~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l 489 (1827)
.+-.|+.+|+.++..++..+++.| .||++.++..+.+.+.+-.++-...-++.+
T Consensus 578 ------------------~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav 639 (1073)
T 3gjx_A 578 ------------------THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAV 639 (1073)
T ss_dssp ------------------CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 112399999999999999999666 368888887777766655544444455555
Q ss_pred HHHHhhc
Q psy14676 490 MALLKGT 496 (1827)
Q Consensus 490 ~~L~~~~ 496 (1827)
+-++...
T Consensus 640 ~~vi~~~ 646 (1073)
T 3gjx_A 640 GYMIGAQ 646 (1073)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 5555443
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.01 E-value=2.6e-08 Score=133.11 Aligned_cols=268 Identities=14% Similarity=0.207 Sum_probs=216.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccC--CCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH
Q psy14676 37 RITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGA--LLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL 114 (1827)
Q Consensus 37 ~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~--~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~ 114 (1827)
.++..|..++.+..++ +.|+.+++.+++.++. .+.+|.-.+++.++..+.|-...||+.|..|+..++..+++..
T Consensus 54 ~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 5667777777543222 9999999999999865 4555666778999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-Cc
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP-KE 193 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-~e 193 (1827)
...+++.++..|........+..++.+++.+++..++.++.++++++|.+...+.|...|+...|..++..++.... ++
T Consensus 131 ~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 131 IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 88899999999966667889999999999999999999999999999999999999999999999998888888775 58
Q ss_pred cccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q psy14676 194 ITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 273 (1827)
Q Consensus 194 ~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~ 273 (1827)
+.||+|.+|..+- +|. + .-+|+..+..
T Consensus 211 ~~~~~~~~~~~~~-----~p~--------------------------------------------~----~~~~~~~l~~ 237 (986)
T 2iw3_A 211 IERFIPSLIQCIA-----DPT--------------------------------------------E----VPETVHLLGA 237 (986)
T ss_dssp TGGGHHHHHHHHH-----CTT--------------------------------------------H----HHHHHHHHTT
T ss_pred hhhhHHHHHHHhc-----Chh--------------------------------------------h----hHHHHHHhhc
Confidence 9999888887665 221 1 3456666666
Q ss_pred HcC--CchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHH
Q psy14676 274 TRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351 (1827)
Q Consensus 274 ~~~--~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l 351 (1827)
+.- +.-.|-+.-++|.|...|++|+-.++..+.-....+++-+. -..-..+.+|.++|.+
T Consensus 238 ~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~------------------~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 238 TTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE------------------DPQVIAPFLGKLLPGL 299 (986)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC------------------CHHHHHHHHTTTHHHH
T ss_pred CeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC------------------CHHHHhhhhhhhhhHH
Confidence 643 45566788899999999999999997777766666665431 0245678899999999
Q ss_pred HHHhc-cCCHhHHHHHHHHHHHHHHhCc
Q psy14676 352 QCQLR-EKSIRTRQDCLALLRELVQTLP 378 (1827)
Q Consensus 352 ~~~L~-d~~~~vR~a~~~ll~~L~~vl~ 378 (1827)
.+-.. -.+|++|..|-..+..|..+..
T Consensus 300 ~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 300 KSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 88653 3679999998888888877643
No 56
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.01 E-value=2.8e-07 Score=120.76 Aligned_cols=469 Identities=11% Similarity=0.071 Sum_probs=280.2
Q ss_pred hhccccchhhHHHHHHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhh
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYF 1085 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~ 1085 (1827)
+.+.....|+++.-.+..+....++. ++..+.+-++++++..|-.|+.+++.+.... +.+.
T Consensus 83 ~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e----------------~~~~ 146 (621)
T 2vgl_A 83 LSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE----------------MAEA 146 (621)
T ss_dssp GGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH----------------HHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH----------------HHHH
Confidence 35556666777666666666555443 4667788889999999999999999764321 2678
Q ss_pred hhHHHHHhh--cCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASV--GDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQII 1163 (1827)
Q Consensus 1086 Lip~l~~~l--~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~ 1163 (1827)
++|.+.+++ .|+.+.||..|+-++..+.+. .| +.. ++ ..+++.+...|. |.|+.|+..|+.++..+.
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p------~~~-~~-~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SP------DLV-PM-GDWTSRVVHLLN--DQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CG------GGC-CC-CSCHHHHHHHTT--CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-Ch------hhc-Cc-hhHHHHHHHHhC--CCCccHHHHHHHHHHHHH
Confidence 999999999 999999999999999998873 32 111 11 123333334454 889999999999999998
Q ss_pred HHhhhhhhhhhhhhHHHHHHhhhh--------------hhh-HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhh----
Q psy14676 1164 CNLGDYLKSELPVCLPILLDRLRN--------------EIT-RLTTVKALTKIAASPLRIDLRPILTDGIPILGSF---- 1224 (1827)
Q Consensus 1164 ~~~g~~l~~~l~~lL~~Ll~~L~~--------------e~t-R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~---- 1224 (1827)
..-+..+.+..+.++..|.+.+.. ..| +...++.++.++... ..+....+.+.+..+...
T Consensus 216 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~ 294 (621)
T 2vgl_A 216 QKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEP 294 (621)
T ss_dssp HHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccC
Confidence 876654445555555544433321 234 666666666554311 011122222233322221
Q ss_pred -----hcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHH
Q psy14676 1225 -----LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 1299 (1827)
Q Consensus 1225 -----Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~ 1299 (1827)
++..+. -....++|...++.-.+ .++.....+..|..++.++|..++-.++..|..++...|..
T Consensus 295 ~ks~~l~~~n~-~~aVl~ea~~~i~~l~~---~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~------- 363 (621)
T 2vgl_A 295 PKSKKVQHSNA-KNAVLFEAISLIIHHDS---EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH------- 363 (621)
T ss_dssp CSCSSHHHHHH-HHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-------
T ss_pred cccccccccch-HHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-------
Confidence 111111 11233444444444321 34567778888889999999999999999999888755420
Q ss_pred hhhhhcccccCCCchhhHHHHHHHhcC-CCCHhHHHHHHHHHhhhh-hhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHH
Q psy14676 1300 SILPQIGRHTDLTSVADLKQVILNAFT-PTSEEVKSAASYTLGSIA-VGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEI 1376 (1827)
Q Consensus 1300 ~~lgeiG~~~~~~~~~~l~~~~l~~~~-~~s~eVr~aAa~aLG~i~-~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Ei 1376 (1827)
.........|+.++. +++..||..|...|-.++ ..|+..++..+++.+.+ +...+..+..+++.+
T Consensus 364 ------------~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 364 ------------EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp ------------HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 012345678899998 999999999998888765 45788888888887765 333344455666665
Q ss_pred HhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC---cchHHHHHhhhcCCHHHHHHHHHH
Q psy14676 1377 ISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS---NLLPRLQESLKSNSALMRTTVLTA 1453 (1827)
Q Consensus 1377 i~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~~~~~~R~t~l~A 1453 (1827)
..+. .+-..|..+.|++.+....+-+..-+...+-.+....|+ ..+..|.+.+.++.. +..++.+
T Consensus 432 a~k~----------~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~--~~~li~~ 499 (621)
T 2vgl_A 432 AEKY----------AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPAC--HENLVKV 499 (621)
T ss_dssp HHHH----------CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSC--CHHHHHH
T ss_pred HHhc----------CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccc--hHHHHHH
Confidence 4432 122244444444433222222333345555566555553 344556666655432 2334433
Q ss_pred HHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhH-HHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHH
Q psy14676 1454 VKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDS-ERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVE 1532 (1827)
Q Consensus 1454 lk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~-~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~ 1532 (1827)
.-+++.+-+ +.+ .. .++. ...++..+...+.+..+.||....-++.++..+.+. ..
T Consensus 500 ~~wilGEy~----~~~------------~~-----~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~ 556 (621)
T 2vgl_A 500 GGYILGEFG----NLI------------AG-----DPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VK 556 (621)
T ss_dssp HHHHHHHHT----HHH------------HS-----STTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GH
T ss_pred HHHHhcchH----HHh------------cc-----cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HH
Confidence 334443211 000 00 0000 013455666667788899999999999999865542 33
Q ss_pred HHHHHHHhhhcc--cccccccCCccchhHHHHHHHhhhhc
Q psy14676 1533 TIVDALCSNMVS--DKEQLRDISSIGLKTVISVVYCLGDR 1570 (1827)
Q Consensus 1533 ~~v~~l~~~l~~--~~~~~~~~~~~~vRr~Al~~l~s~a~ 1570 (1827)
+.+..++..... + +|.|||--|..-++-...
T Consensus 557 ~~i~~~l~~~~~~~~-------~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 557 ATIQDVLRSDSQLKN-------ADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHSSHHHHSC-------SSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHcc
Confidence 445555543333 3 345999888877666543
No 57
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.98 E-value=4.9e-05 Score=104.00 Aligned_cols=499 Identities=10% Similarity=0.077 Sum_probs=258.1
Q ss_pred chHHHHHHHHHHHHHHHhh----CCCCChhhhhhHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhccCCCCc
Q psy14676 4 DKEQLRDISSIGLKTVISE----LPLGSNALAANVCRRITGKLSTAIEK----QEDVSVQLEALDILSDLLSRFGALLPS 75 (1827)
Q Consensus 4 ~~~~~Rdi~~~~Lktvi~~----lp~~~~~~~~~v~~~L~P~Ll~~l~~----~~~~~v~~~al~iL~~l~~~~~~~l~~ 75 (1827)
...++|=.+...|+..|.. +|.. ....++..|+..+.....+ +.++.++.....+++.++.+.-|.
T Consensus 73 ~~~~vR~fAa~~L~~~I~~~W~~L~~e---~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~--- 146 (1073)
T 3gjx_A 73 QNMNTKYYGLQILENVIKTRWKILPRN---QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK--- 146 (1073)
T ss_dssp CSHHHHHHHHHHHHHHHHHTGGGSCHH---HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhCCHH---HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---
Confidence 3568999999999999883 6542 3345566666655543322 235778888889999998875442
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch--------h-------HH----HHHHHHHHHhccCCCCHHHHH
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL--------Q-------LY----TKLIDFLLEGLTTNKSTSTNR 136 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~--------~-------~~----~~l~~~ll~~L~~~~~~~~r~ 136 (1827)
.++.+++-+++.+++ ++..+......|..+.+.+.+ . .+ ..++.-+...|....++.+..
T Consensus 147 ~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~ 225 (1073)
T 3gjx_A 147 HWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVH 225 (1073)
T ss_dssp TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHH
T ss_pred hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 345555555555532 345566677777777765321 0 11 112222222233445677888
Q ss_pred HHHHHHHHHHHHhchhh-HHhHHHHHHHH-HhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHH----HHhc
Q psy14676 137 TYIQCFAAICRQAGHRF-AEHIERVMPLI-LKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCL----TYIT 210 (1827)
Q Consensus 137 ~ai~~l~~la~~~~~~~-~p~l~~i~p~l-~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll----~~l~ 210 (1827)
.++++++....-.+-.. .. ..+++.+ ..++ .++++|+.|+.++-.++..-..+....+..+...++ +.+.
T Consensus 226 ~~L~~L~~~~sWI~i~~i~~--~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp 301 (1073)
T 3gjx_A 226 ATLETLLRFLNWIPLGYIFE--TKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLP 301 (1073)
T ss_dssp HHHHHHHHHTTTSCTHHHHS--SSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCHHHhcc--chHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 88899999887765322 11 4577776 4666 468899999888877666421122222222332222 2221
Q ss_pred cCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHH-------HHHHHcCCchhhhH
Q psy14676 211 YDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLE-------AIIATRRDLIGDMY 283 (1827)
Q Consensus 211 ~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~-------~l~~~~~~~l~~~~ 283 (1827)
..++. .. .. ..++ ++|.+ .++ +-+..+. .++...|+ +.+++
T Consensus 302 ~~~~l--~~--~y--------~~~~---------------~~d~e---~~~-~l~~~f~~~~e~~~~lIe~~p~-~~~~l 349 (1073)
T 3gjx_A 302 LNTNI--RL--AY--------SNGK---------------DDEQN---FIQ-NLSLFLCTFLKEHGQLLEKRLN-LREAL 349 (1073)
T ss_dssp TTSCH--HH--HH--------HTCC---------------TTHHH---HHH-HHHHHHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred CchhH--HH--HH--------hccc---------------hhhHH---HHH-HHHHHHHHHHHHHHHHHhcCcc-chHHH
Confidence 11111 00 00 0000 00000 122 1222222 23333232 33455
Q ss_pred HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCC-----CCCCCCCCCCC-CCChHhhHHhhhHHHHHHHHHHhcc
Q psy14676 284 RLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSP-----LTPSDPNQMDQ-EDSPLCLLSTQVPSLVKALQCQLRE 357 (1827)
Q Consensus 284 ~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~-----~~~~~~~~~~~-~~~~~~~l~~~lp~Iv~~l~~~L~d 357 (1827)
..++.+|+.....++.++=.-.+.-|..+.+....... .|.. ..+..+ -...+....+.+..++..++..|.-
T Consensus 350 ~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~-~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~ 428 (1073)
T 3gjx_A 350 MEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLL-SGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK 428 (1073)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCT-TSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccc-cccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 55666677766777888888888888777765442210 0000 000000 0112234667777778888887742
Q ss_pred CCH----------hHHH--------HHHHHHHHH----HHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCC
Q psy14676 358 KSI----------RTRQ--------DCLALLREL----VQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDT 415 (1827)
Q Consensus 358 ~~~----------~vR~--------a~~~ll~~L----~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~ 415 (1827)
+.. .+|+ .++..++.. ....+. ..+..+++.+.+.+..
T Consensus 429 P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~---~~~~i~~~~l~~~~~~----------------- 488 (1073)
T 3gjx_A 429 PEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYV---DTEIIMTKKLQNQVNG----------------- 488 (1073)
T ss_dssp SCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTS-----------------
T ss_pred CccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHhcC-----------------
Confidence 220 1111 222222222 222221 1123333333333210
Q ss_pred cccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh-hhhhHHhhhhhHHHhhcch-----hhhhHHHHHHHH
Q psy14676 416 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-IGDMYRLVSPPLIARFKER-----EENVKSDIFHAY 489 (1827)
Q Consensus 416 e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~-f~~~~~~l~~~L~~~~~d~-----~~~Vr~~a~~~l 489 (1827)
+..+|..+.+++=+++.++++..+. =.++++.+++.|++..... ...||....=++
T Consensus 489 ------------------~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vl 550 (1073)
T 3gjx_A 489 ------------------TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIV 550 (1073)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHH
Confidence 1247999999999999998766643 3478888888887655322 111222111111
Q ss_pred HHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHH
Q psy14676 490 MALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDL 569 (1827)
Q Consensus 490 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl 569 (1827)
++ ..+-+..
T Consensus 551 gr---------------------------------------Y~~wl~~-------------------------------- 559 (1073)
T 3gjx_A 551 GQ---------------------------------------YPRFLRA-------------------------------- 559 (1073)
T ss_dssp HH---------------------------------------CHHHHHH--------------------------------
T ss_pred hh---------------------------------------hHHHHHh--------------------------------
Confidence 11 1111110
Q ss_pred HHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhh
Q psy14676 570 MSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ 649 (1827)
Q Consensus 570 ~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~ 649 (1827)
.+.....++..|++.+.|.+.+|+..|..++..+...++..-.....-+..||++.++..+.+...+=+
T Consensus 560 -----------h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~ 628 (1073)
T 3gjx_A 560 -----------HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ 628 (1073)
T ss_dssp -----------CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC
T ss_pred -----------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC
Confidence 012344566677788888888999999888888877777532111112345677766666665554433
Q ss_pred hhhhhhhHHHHHHHHhh
Q psy14676 650 RALKLSTLLLLDTLLVN 666 (1827)
Q Consensus 650 ~~lk~~~l~~l~~l~~~ 666 (1827)
..-...-..++..++..
T Consensus 629 ~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 629 PQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333444444433
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.87 E-value=4.4e-08 Score=110.26 Aligned_cols=188 Identities=18% Similarity=0.184 Sum_probs=138.0
Q ss_pred hhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhhhhch
Q psy14676 1315 ADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQLQQF 1393 (1827)
Q Consensus 1315 ~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~ 1393 (1827)
+..++.+++.+.+++..+|..|+.+||.++. +..+|.+++.+.+. +..+...+++|+++-. . ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------~---~~ 82 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------E---RA 82 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------G---GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------H---HH
Confidence 5688899999999999999999999999876 35677778877663 4466666777766521 1 12
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHH
Q psy14676 1394 VPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMA 1473 (1827)
Q Consensus 1394 ~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a 1473 (1827)
++.|.+.+.+++..+|..++.+||++.. ...+|.|.+.++++++.+|..++.++..+-..
T Consensus 83 ----~~~L~~~l~~~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------- 142 (211)
T 3ltm_A 83 ----VEPLIKALKDEDGWVRQSAAVALGQIGD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------------- 142 (211)
T ss_dssp ----HHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-------------
Confidence 3444555567788899999999999863 45779999999999999999999999887321
Q ss_pred hhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCC
Q psy14676 1474 TNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDIS 1553 (1827)
Q Consensus 1474 ~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~ 1553 (1827)
..++.+..+++|+++.||..|+.+||.+.. ...+..+...+..+
T Consensus 143 ---------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~-------- 186 (211)
T 3ltm_A 143 ---------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETG-------- 186 (211)
T ss_dssp ---------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHC--------
T ss_pred ---------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCC--------
Confidence 134788899999999999999999999863 22233333333322
Q ss_pred ccchhHHHHHHHhhhhccCC
Q psy14676 1554 SIGLKTVISVVYCLGDRNSS 1573 (1827)
Q Consensus 1554 ~~~vRr~Al~~l~s~a~~~p 1573 (1827)
+..||+.|..+|....++.+
T Consensus 187 ~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 187 TGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 33899999999988876544
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.84 E-value=6.5e-08 Score=108.83 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=140.5
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHH
Q psy14676 1259 VTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 1338 (1827)
Q Consensus 1259 ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~ 1338 (1827)
.++.|...+.+.|..++..++..|+.+.. +..++.+++.+.++++.||..|+.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---------------------------~~~~~~L~~~l~~~~~~vr~~a~~ 72 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------------------ERAVEPLIKALKDEDAWVRRAAAD 72 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------------------------GGGHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------------------------ccHHHHHHHHHcCCCHHHHHHHHH
Confidence 34556677889999999998887764311 356788889999999999999999
Q ss_pred HHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHH
Q psy14676 1339 TLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVA 1417 (1827)
Q Consensus 1339 aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aA 1417 (1827)
+||.++. +..+|.+++.+.+ ++..|...+++|+.+-. . .. ++.|.+.+.+++..+|..++
T Consensus 73 aL~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------~---~~----~~~L~~~l~d~~~~vr~~a~ 133 (211)
T 3ltm_A 73 ALGQIGD---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------E---RA----VEPLIKALKDEDWFVRIAAA 133 (211)
T ss_dssp HHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------G---GG----HHHHHHHTTCSSHHHHHHHH
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------H---HH----HHHHHHHHhCCCHHHHHHHH
Confidence 9999875 3467888888876 34567777777776521 1 12 34445555677888999999
Q ss_pred HHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHH
Q psy14676 1418 ECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVV 1497 (1827)
Q Consensus 1418 ecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~ 1497 (1827)
.+||++. ....+|.|.++++++++.+|..++.+|..+-. + ..+
T Consensus 134 ~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~---------------------------~~~ 176 (211)
T 3ltm_A 134 FALGEIG---DERAVEPLIKALKDEDGWVRQSAADALGEIGG-------E---------------------------RVR 176 (211)
T ss_dssp HHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------H---------------------------HHH
T ss_pred HHHHHcC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------h---------------------------hHH
Confidence 9999985 35678999999999999999999999998742 1 345
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhhhhhh
Q psy14676 1498 KMLLRLLEDKNGEVQNLAVKCLGPLVNK 1525 (1827)
Q Consensus 1498 ~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~ 1525 (1827)
+.+..+++|+++.||..|..+|+.+...
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 8888999999999999999999998753
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.84 E-value=8e-08 Score=107.21 Aligned_cols=184 Identities=16% Similarity=0.133 Sum_probs=142.7
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHH
Q psy14676 1258 KVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 1337 (1827)
Q Consensus 1258 ~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa 1337 (1827)
...+.+..++.+.|..++..++..|+.+.. +...+.+++.+.++++.||..|+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---------------------------~~~~~~L~~~l~~~~~~vr~~a~ 66 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------------------ERAVEPLIKALKDEDAWVRRAAA 66 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------------------------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC---------------------------hhHHHHHHHHHcCCCHHHHHHHH
Confidence 455666789999999999998888764321 34667888999999999999999
Q ss_pred HHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHH
Q psy14676 1338 YTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVV 1416 (1827)
Q Consensus 1338 ~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~a 1416 (1827)
.+||.++.. ..+|.+.+.+.+ ++..|...+++|+.+-. . .. ++.|.+.+.+++..+|..+
T Consensus 67 ~~L~~~~~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~---~~----~~~L~~~l~d~~~~vr~~a 127 (201)
T 3ltj_A 67 DALGQIGDE---RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------E---RA----VEPLIKALKDEDWFVRIAA 127 (201)
T ss_dssp HHHHHHCCG---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------G---GG----HHHHHHHTTCSSHHHHHHH
T ss_pred HHHHhhCCH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------H---HH----HHHHHHHHcCCCHHHHHHH
Confidence 999998753 467788888776 34567777777776521 1 12 3444555567778899999
Q ss_pred HHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHH
Q psy14676 1417 AECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKV 1496 (1827)
Q Consensus 1417 AecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l 1496 (1827)
+.+||++.. ...+|.|.+.++++++.+|..++.++..+-. + ..
T Consensus 128 ~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------~---------------------------~~ 170 (201)
T 3ltj_A 128 AFALGEIGD---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------E---------------------------RV 170 (201)
T ss_dssp HHHHHHHTC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------H---------------------------HH
T ss_pred HHHHHHhCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------h---------------------------hH
Confidence 999999863 5678999999999999999999999988731 1 34
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhhh
Q psy14676 1497 VKMLLRLLEDKNGEVQNLAVKCLGPLVN 1524 (1827)
Q Consensus 1497 ~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~ 1524 (1827)
++.+..+++|+++.||..|..+|+.+-.
T Consensus 171 ~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 171 RAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 5888889999999999999999998864
No 61
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.4e-05 Score=103.77 Aligned_cols=536 Identities=11% Similarity=0.133 Sum_probs=300.2
Q ss_pred HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCC
Q psy14676 851 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 930 (1827)
Q Consensus 851 ~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~ 930 (1827)
+.-..+...+...+.-..++ ....+++++-.+...++..|.. +.-++..+.- +-+.++||-.++-+.-.+.+.+++
T Consensus 128 ~~~~~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~ 203 (778)
T 3opb_A 128 DATIALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKELIL--RISEDEVKSMMLIIFAELQSSFQK 203 (778)
T ss_dssp GGGHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHHHT--TTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHhcc--ccChhhhHHHHHHHHHHHHHhCch
Confidence 33344455554443322233 5688999999999998887777 5555544443 335678888877776665554443
Q ss_pred ccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhh
Q psy14676 931 EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1010 (1827)
Q Consensus 931 ~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~ 1010 (1827)
+..-.+..+++ .+++.. .+...-++....+ +.+.++=|+.|.+...+|..
T Consensus 204 ~~~~~~~~~~~-----------~l~~e~----------~~~~~~~~~~~~~-------~~l~~lfPi~p~~~s~lfl~-- 253 (778)
T 3opb_A 204 DFDKAVVDFMS-----------SLIVEA----------EIDVGNDPLSIIV-------KTLSELYPSLTTLCSEIFLT-- 253 (778)
T ss_dssp HHHHHHHHHHH-----------HHHHHH----------HHTCSSCHHHHHH-------HHHHHHTTTTHHHHHHHHST--
T ss_pred HHHHHHHHHHH-----------HHHHhh----------ccCCCCccHHHHH-------HHHHHHhcCCHHHHHHHHcc--
Confidence 32222221110 000000 0000000000111 23455667777777777633
Q ss_pred ccccchhhHHHHHHhhhcccCCCCchHHHHHHhccC-ChhhHHHHHHHHHHH--HHhccccccccccchhhhhhhhhhhh
Q psy14676 1011 CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSN-SALMRTTHQSNQTFN--VIIQRNDIHNHNEETSFIYSFYYFLL 1087 (1827)
Q Consensus 1011 ~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~-~~~~R~~a~~~L~~l--~~~~~~~l~~~~~~~~~~~~~l~~Li 1087 (1827)
+.+.|.+.+.+++. +.....+++.+|... ...++..+..| .+
T Consensus 254 ----------------------e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~-------------~~ 298 (778)
T 3opb_A 254 ----------------------KGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITEN-------------YL 298 (778)
T ss_dssp ----------------------TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHH-------------HH
T ss_pred ----------------------ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHh-------------HH
Confidence 55677777777543 344556666666633 22333333333 44
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Q psy14676 1088 SPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLG 1167 (1827)
Q Consensus 1088 p~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g 1167 (1827)
+.+.+.+++ ..++..|+-++..+...-.+ . ..-+.++.+.+...+. +.+.+.++.|+++|+.+-- .
T Consensus 299 ~~L~~~l~~--~~ir~lAavvL~KL~~~~~~------~--~~si~~La~~~~~~L~--~~~~~~~~~AvEgLaYLSl--~ 364 (778)
T 3opb_A 299 QLLERSLNV--EDVQIYSALVLVKTWSFTKL------T--CINLKQLSEIFINAIS--RRIVPKVEMSVEALAYLSL--K 364 (778)
T ss_dssp HHHHHHTTS--GGGHHHHHHHHHHHTGGGTC------T--TCCHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHHTT--S
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHhcCCCC------C--cCcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhC--C
Confidence 555555654 46666565554444332111 1 1235667777777776 3344559999999998742 2
Q ss_pred hhhhh---hhhhhHHHHHHhhhh-hh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcch--------hHHHH
Q psy14676 1168 DYLKS---ELPVCLPILLDRLRN-EI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKN--------QRALK 1233 (1827)
Q Consensus 1168 ~~l~~---~l~~lL~~Ll~~L~~-e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~--------~r~lR 1233 (1827)
..+.. .-+.+++.|++.+++ +. .-..++..++.+..+....... ..-+..|..|..-. ..-..
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e---~~~l~~Lk~~A~~~~p~~~~~d~~~~~ 441 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX---XXXXXXXXXXXXXXXPAADKVGAEKAA 441 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC---CC------------------CCTHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh---hhhhhhhhhhccccCcccCcccccccc
Confidence 22222 225578888888875 22 2566666666666543221110 01122222222100 00000
Q ss_pred HHHHHH-HHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCC
Q psy14676 1234 LSTLLL-LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLT 1312 (1827)
Q Consensus 1234 ~~al~a-L~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~ 1312 (1827)
..-+.. -...+. . .+++|.|..+++..+..++..+..+|..++.. ++.- +.+ +
T Consensus 442 ~~~v~~~~~~~l~------e----aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R---------~~l---v--- 495 (778)
T 3opb_A 442 KEDILLFNEKYIL------R----TELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI---------PQL---A--- 495 (778)
T ss_dssp HHHHHHHHHHHTT------T----TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH---------HHH---H---
T ss_pred hHHHHHHHHHHHH------H----CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH---------HHH---H---
Confidence 011111 001111 1 13778888889889999999999999998753 2110 011 1
Q ss_pred chhhHHHHHHHhcCCCCHh---HHHHHHHHHhhhhhh-h---------hhhhHHHHHHhhhcCc---------------h
Q psy14676 1313 SVADLKQVILNAFTPTSEE---VKSAASYTLGSIAVG-N---------LQQYVPFVLKEIENQP---------------K 1364 (1827)
Q Consensus 1313 ~~~~l~~~~l~~~~~~s~e---Vr~aAa~aLG~i~~~-~---------l~~~LP~Il~~i~~~~---------------~ 1364 (1827)
....++.++..+.+.++. +|..|+.||.++... | .-.-+|.+++.+...+ .
T Consensus 496 -qqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 496 -QQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp -HTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred -HCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 123567777778776554 899999999996532 1 1135578888776211 1
Q ss_pred hhHHHHHHHHHHHhhccccccchhhhhc-hHH--HHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC----cc------
Q psy14676 1365 RQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVP--AIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS----NL------ 1431 (1827)
Q Consensus 1365 ~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~--~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~----~~------ 1431 (1827)
.++-.+.||.-+......+ ++.++. .+. ..|+.+...+.++.+.+|..|++|+..|+. +|. .+
T Consensus 575 ~~feAL~ALTNLAs~~~n~---~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 575 DNYEALLALTNLASSETSD---GEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENP 650 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHH---HHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSH
T ss_pred HHHHHHHHHHHHhcCCccc---chHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCc
Confidence 2667788888776521000 123433 333 478888888877788999999999999996 443 22
Q ss_pred -----hHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHH-HHHHHHHHHhhc
Q psy14676 1432 -----LPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSE-RKVVKMLLRLLE 1505 (1827)
Q Consensus 1432 -----lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~-~~l~~~ll~~l~ 1505 (1827)
++.|..++.+++...|..+.-||..+.+.. +... +.+ +. ...++.++.+++
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-----~~ia----~~l--------------l~~~~gi~~Ll~lL~ 707 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-----PLIA----KEL--------------LTKKELIENAIQVFA 707 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-----HHHH----HHH--------------TTCHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-----hHHH----HHH--------------HHccccHHHHHHHHh
Confidence 556888899999999999999998875432 1110 000 01 246678888888
Q ss_pred C--CchHHHHHHHHHhhhhhhhh
Q psy14676 1506 D--KNGEVQNLAVKCLGPLVNKV 1526 (1827)
Q Consensus 1506 D--~~~~Vr~~a~~~Lg~L~~~l 1526 (1827)
+ +++++|.+++.++..|+...
T Consensus 708 ~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 708 DQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHHHHHHHhh
Confidence 8 89999999999999999743
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.79 E-value=1.4e-07 Score=105.25 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=138.1
Q ss_pred chhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhh
Q psy14676 1313 SVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQ 1391 (1827)
Q Consensus 1313 ~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~ 1391 (1827)
+.+...+.+++.+.++++.+|..|+.+||.++. +..+|.+++.+.+ ++..+...+++|+.+-. .
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~---- 75 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E---- 75 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G----
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H----
Confidence 346789999999999999999999999999875 3467778887765 34456666677766521 1
Q ss_pred chHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHH
Q psy14676 1392 QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRF 1471 (1827)
Q Consensus 1392 ~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~ 1471 (1827)
.. .+.|.+.+.+++..+|..++.+||++.. ...+|.|.+.++++++.+|..++.++..+-..
T Consensus 76 ~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------- 137 (201)
T 3ltj_A 76 RA----VEPLIKALKDEDGWVRQSAAVALGQIGD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------- 137 (201)
T ss_dssp GG----HHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-----------
T ss_pred HH----HHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-----------
Confidence 12 3444555567788899999999999853 45789999999999999999999999887421
Q ss_pred HHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhccccccccc
Q psy14676 1472 MATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRD 1551 (1827)
Q Consensus 1472 ~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~ 1551 (1827)
..++.+..+++|+++.||..|+.+||.+.. . ..+..+...+..
T Consensus 138 -----------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----~---~~~~~L~~~l~d------- 180 (201)
T 3ltj_A 138 -----------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG----E---RVRAAMEKLAET------- 180 (201)
T ss_dssp -----------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----H---HHHHHHHHHHHH-------
T ss_pred -----------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----h---hHHHHHHHHHhC-------
Confidence 134788899999999999999999999852 2 222233332222
Q ss_pred CCccchhHHHHHHHhhh
Q psy14676 1552 ISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1552 ~~~~~vRr~Al~~l~s~ 1568 (1827)
++..||..|..+|...
T Consensus 181 -~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 181 -GTGFARKVAVNYLETH 196 (201)
T ss_dssp -CCHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 2348999999998654
No 63
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.76 E-value=2.1e-07 Score=107.14 Aligned_cols=237 Identities=14% Similarity=0.144 Sum_probs=167.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
.++.+++.|.++++.+|..|+.+|..++...++. .. ...++.++..|.+ ++..++..++.+++.++...+..-..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3677889999999999999999999998865422 11 1356777777765 45889999999999998653322111
Q ss_pred hH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCC
Q psy14676 156 HI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGM 233 (1827)
Q Consensus 156 ~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~ 233 (1827)
.. ...+|.+++.++++++++|+.|..++..+....++...... ...++.+++.+..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---------------------- 139 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS---------------------- 139 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----------------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----------------------
Confidence 11 35788999999888999999998888877753332111111 2367777766531
Q ss_pred CCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhh-HHhhhHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy14676 234 DTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDM-YRLVSPPLIARFKEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 234 d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~-~~~v~p~L~~~l~e~ee~VR~aa~~al~~l 312 (1827)
.++.+|+.++.+|..++...++....+ -..++|.|+..+++.++.+|..++.+++.+
T Consensus 140 ----------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 140 ----------------------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp ----------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 125799999999999986544322222 235789999999999999999999999988
Q ss_pred HhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccc
Q psy14676 313 LKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC 380 (1827)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~ 380 (1827)
.... ......+.. ..+++.+.+.++++++++|..+...++.+....++.
T Consensus 198 ~~~~-----------------~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 198 ASGP-----------------TSAIKAIVD--AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp TTSB-----------------HHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HcCC-----------------HHHHHHHHH--CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 7421 001111111 346788888899999999999999999998876553
No 64
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.73 E-value=2.9e-06 Score=119.53 Aligned_cols=328 Identities=10% Similarity=0.047 Sum_probs=194.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc-hhH-------H-HHHHHHHHHhcc-------CCCCHHHHHHHHHHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCN-LQL-------Y-TKLIDFLLEGLT-------TNKSTSTNRTYIQCF 142 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~-~~~-------~-~~l~~~ll~~L~-------~~~~~~~r~~ai~~l 142 (1827)
.+++.++..+.+ +.+|..|+.||..++..-. .+. + ...+..+++.+. .+.+.+.++..++.+
T Consensus 249 ~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll 326 (1204)
T 3a6p_A 249 KLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVL 326 (1204)
T ss_dssp HHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHH
Confidence 477777776664 5699999999999997432 111 1 112234444431 112356777777888
Q ss_pred HHHHHHhch--------hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-------CccccchHHHHHHH--
Q psy14676 143 AAICRQAGH--------RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP-------KEITPHIQSITELC-- 205 (1827)
Q Consensus 143 ~~la~~~~~--------~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-------~e~~p~l~~ii~~l-- 205 (1827)
..++..... ...+++..++++++.+++.++.++- ..++++|...+. ..+.+|++.+++.+
T Consensus 327 ~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs---~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~ 403 (1204)
T 3a6p_A 327 CALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLR---SSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMT 403 (1204)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHH---HHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhH---HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 777754332 2345788999999999887766654 555667765321 23568899999999
Q ss_pred -HHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH
Q psy14676 206 -LTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR 284 (1827)
Q Consensus 206 -l~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~ 284 (1827)
+..++|+++.... ..+| .. ||+|+ .+|+++.-|..|+..+..+..++...|.. .+.
T Consensus 404 ~l~k~~yp~~~~~~-~~~~------------~~----~D~d~---~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~---~l~ 460 (1204)
T 3a6p_A 404 NLVKMGFPSKTDSP-SCEY------------SR----FDFDS---DEDFNAFFNSSRAQQGEVMRLACRLDPKT---SFQ 460 (1204)
T ss_dssp HHSCCCCSSCCSST-HHHH------------HH----HHCSS---HHHHHHHHHHHHHHHHHHHHHHHHHCHHH---HHH
T ss_pred HHHHhcCccccCCc-chhh------------hh----cccCC---cHHHHHHHHHHHHHHHHHHHHHHhcCHHH---HHH
Confidence 6666664332100 0000 00 00000 00112345899999999999998877643 234
Q ss_pred hhhHHHHhhcC-------------------------CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 285 LVSPPLIARFK-------------------------EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 285 ~v~p~L~~~l~-------------------------e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
.+.+++...+. +..|..+.+.+..+.++++........ +..
T Consensus 461 ~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~-----------~~l--- 526 (1204)
T 3a6p_A 461 MAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR-----------EEI--- 526 (1204)
T ss_dssp HHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCT-----------TCC---
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccc-----------ccc---
Confidence 44455543332 223445566666666666544211100 000
Q ss_pred HHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccC
Q psy14676 340 LSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEED 419 (1827)
Q Consensus 340 l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed 419 (1827)
....+|.+++.+++ ++.++|.+|+.++.+++.+...+.. -.++++.++..|...+.+.+..
T Consensus 527 ~~~~~~~Ll~~ll~-~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~----------------- 587 (1204)
T 3a6p_A 527 PVNDGIELLQMVLN-FDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVE----------------- 587 (1204)
T ss_dssp CHHHHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTC-----------------
T ss_pred cHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcc-----------------
Confidence 01235555555433 2456889999999888887776532 2356777777777666421000
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhc
Q psy14676 420 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFK 475 (1827)
Q Consensus 420 ~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~ 475 (1827)
..+....+.+=++|.+|..++..++..+++.|.||++.+...+...+.
T Consensus 588 --------~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 588 --------ESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp --------STTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred --------cccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 000011112346999999999999999999999999999888877664
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.72 E-value=0.00095 Score=88.45 Aligned_cols=295 Identities=14% Similarity=0.112 Sum_probs=189.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhh----------hhhHHHHHHHHHHHhcCCCccccchhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRN----------EITRLTTVKALTKIAASPLRIDLRPILT 1215 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~----------e~tR~~av~al~~ia~~~~~~dl~p~~~ 1215 (1827)
..+..+|--|+-++|-+-...+. ..+..|.+.+.+ +..|..|+-+||.+...+.+ .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------e 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------I 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------H
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------H
Confidence 35678999999999997665543 245555555543 33589999999987654322 3
Q ss_pred hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccch
Q psy14676 1216 DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVE 1295 (1827)
Q Consensus 1216 ~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~ 1295 (1827)
++++.|...+.+.+..+|..+.-+|+.+..-.+ +.+.+..++..+. .+.+-.++..+...|+-+..
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg---n~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~-------- 537 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG---KPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINY-------- 537 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC---CHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhC--------
Confidence 455566666665555677777778886644222 2344455554332 34455666666655554432
Q ss_pred hhHHhhhhhcccccCCCchhhHHHHHHHhc-CCCCHhHHHHHHHHHhh--hhhhhhhhhHHHHHHhhhc--CchhhHHHH
Q psy14676 1296 PAAASILPQIGRHTDLTSVADLKQVILNAF-TPTSEEVKSAASYTLGS--IAVGNLQQYVPFVLKEIEN--QPKRQYLLL 1370 (1827)
Q Consensus 1296 ~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~-~~~s~eVr~aAa~aLG~--i~~~~l~~~LP~Il~~i~~--~~~~q~~~l 1370 (1827)
|+ +...+.+++.+ .+.++-+|..|+.++|- +|.||.. .+..+++.+.+ ....|....
T Consensus 538 ----------g~-------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-aIq~LL~~~~~d~~d~VRraAV 599 (963)
T 4ady_A 538 ----------GR-------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-AVKRLLHVAVSDSNDDVRRAAV 599 (963)
T ss_dssp ----------TC-------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-HHHHHHHHHHHCSCHHHHHHHH
T ss_pred ----------CC-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHhccCCcHHHHHHHH
Confidence 21 11223333333 36789999999998885 5666632 22333333222 223555667
Q ss_pred HHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-cchHHHHHhhhcCCHHHHHH
Q psy14676 1371 HSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-NLLPRLQESLKSNSALMRTT 1449 (1827)
Q Consensus 1371 ~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-~~lP~L~~~l~~~~~~~R~t 1449 (1827)
.+|+.|.. |.. ..++.++..|.+ +.+..+|..+|.+||.++..+|. ..+..|..+..+.+..+|..
T Consensus 600 iaLGlI~~-------g~~---e~v~rlv~~L~~---~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 600 IALGFVLL-------RDY---TTVPRIVQLLSK---SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HHHHHHTS-------SSC---SSHHHHTTTGGG---CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHhhcc-------CCH---HHHHHHHHHHHh---cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 78887743 111 233444444433 56778999999999999988875 67788888889999999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcC--CchHHHHHHHHHhhhhh
Q psy14676 1450 VLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLED--KNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1450 ~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D--~~~~Vr~~a~~~Lg~L~ 1523 (1827)
++.|+..+...+.+...+.+. .++..+.+...| .++..|+.+.-+.|-+-
T Consensus 667 Ai~ALG~Ig~gtnna~~~rva------------------------~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 667 AMIALSMILIQQTEKLNPQVA------------------------DINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHHHSTTCCTTTCTTHH------------------------HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccccchHHH------------------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 999999999876555444432 455666666755 67899999999998764
No 66
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.70 E-value=1.7e-07 Score=107.92 Aligned_cols=231 Identities=16% Similarity=0.161 Sum_probs=166.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---H
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---L 114 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~ 114 (1827)
+|.|++.+.++ ++.+|..|+.+|+.++....+.... .....++.+++.|.++++.+|..|+.+|++++...++. .
T Consensus 4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 68888888765 6999999999999998765422211 12257888999999999999999999999998753321 1
Q ss_pred HH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 115 YT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 115 ~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
.. ..++.++..|.+ ++..+++.++.+++.++...+....... ...+|.+++.+.++++++|+.|+.++..+....+.
T Consensus 83 ~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 11 246677776664 5689999999999999964433222111 35889999999988999999998888877654322
Q ss_pred ccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHH
Q psy14676 193 EITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 271 (1827)
Q Consensus 193 e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l 271 (1827)
..... -..+++.+.+.+.. .++.+|..|+.+|..+
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~--------------------------------------------~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTS--------------------------------------------TDSEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTC--------------------------------------------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCC--------------------------------------------CCHHHHHHHHHHHHHH
Confidence 11111 13467777776631 0147999999999999
Q ss_pred HHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q psy14676 272 IATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 272 ~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~ 315 (1827)
+...++....+. ..++|.|+..+++.++.+|..|+.+++.+...
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 865443322222 35789999999999999999999999999854
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.64 E-value=2.2e-07 Score=107.31 Aligned_cols=230 Identities=11% Similarity=0.132 Sum_probs=159.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
..+.+...|.++++.+|..|+.+|..+... .+.... ..++.++..|..+ ++.++..++.+|+.++...+..-.
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 356677788899999999999999776665 222222 2457777777654 488999999999999874433222
Q ss_pred HhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCC
Q psy14676 155 EHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEG 232 (1827)
Q Consensus 155 p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~ 232 (1827)
..+ ...+|.+++.++++++++|+.|..++..+....+...... -...+|.+++.+..
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--------------------- 149 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--------------------- 149 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC---------------------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC---------------------
Confidence 222 3588999999998999999999888877754322110111 12467777776621
Q ss_pred CCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHH
Q psy14676 233 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMA 311 (1827)
Q Consensus 233 ~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ 311 (1827)
.+|.+|+.|+.+|..++...++....+. ..++|.|+..+++.++.+|..++.+++.
T Consensus 150 -----------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 150 -----------------------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 206 (252)
T ss_dssp -----------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred -----------------------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 1258999999999999865443322222 4678999999999999999999999999
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHH
Q psy14676 312 LLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELV 374 (1827)
Q Consensus 312 ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~ 374 (1827)
++... +.....+.. ..+++.+.+.++++++++|..|...+..++
T Consensus 207 l~~~~-----------------~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 207 IASGG-----------------NEQKQAVKE--AGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HTTSC-----------------HHHHHHHHH--TTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HhcCC-----------------HHHHHHHHH--CCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 87321 001111111 236788888899999999997776766553
No 68
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.63 E-value=4.8e-05 Score=107.23 Aligned_cols=159 Identities=9% Similarity=0.022 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHhccccc-cccccchhhhhhhhh-hhhHHHHHhh---cCCchhhHHHHHHHHHHHHHHhccCCCCCC
Q psy14676 1050 MRTTHQSNQTFNVIIQRNDI-HNHNEETSFIYSFYY-FLLSPVIASV---GDNFYKITAEALLVLQQFVKVIRPLTSPSS 1124 (1827)
Q Consensus 1050 ~R~~a~~~L~~l~~~~~~~l-~~~~~~~~~~~~~l~-~Lip~l~~~l---~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~ 1124 (1827)
..++....+.++........ .++ ++ .+.|.+++.+ ....|+++..++..++.+...+..
T Consensus 502 ~~ea~~~~leav~~~~~~~~e~~~----------l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~------ 565 (1204)
T 3a6p_A 502 QWEAMTLFLESVITQMFRTLNREE----------IPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY------ 565 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTC----------CCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT------
T ss_pred HHHHHHHHHHHHHHHHhccccccc----------ccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc------
Confidence 44555555655555442222 244 33 2444454443 445789999999988888876541
Q ss_pred CCcchhHHHHHHHHHHHHhhcC----------CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh-----
Q psy14676 1125 YDFAPFTSDIYQCTLVRLKAAD----------IDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI----- 1189 (1827)
Q Consensus 1125 ~~~~~~l~~l~~~ll~~L~~~D----------~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~----- 1189 (1827)
...|+..+++.++..+.... ...+||.+|..++..+....++.+.|+++.+...+...+....
T Consensus 566 --~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~ 643 (1204)
T 3a6p_A 566 --RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQM 643 (1204)
T ss_dssp --CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHH
T ss_pred --CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHH
Confidence 12578888888888876210 3458999999999999999999999999999988877665332
Q ss_pred hHHHHHHHHHHHhcCCCc-cccchhhhhhHhhhhhhhc
Q psy14676 1190 TRLTTVKALTKIAASPLR-IDLRPILTDGIPILGSFLR 1226 (1827)
Q Consensus 1190 tR~~av~al~~ia~~~~~-~dl~p~~~~~l~~L~~~Lr 1226 (1827)
.+..-..+++.++..... .....++..+++.+...+.
T Consensus 644 e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 644 EKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 367777788888643111 1112345555555554443
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.63 E-value=6.7e-06 Score=108.60 Aligned_cols=305 Identities=17% Similarity=0.139 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhh-----hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhh
Q psy14676 1151 VKERAISCMGQIICNLGDYLKSELPVCLPILLDRLR-----NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFL 1225 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~-----~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~L 1225 (1827)
.+-.|..++|.+-. |. ....+..|-+.+. ++..|..|+.++|.+..... .+++..|..++
T Consensus 374 ~k~sA~aSLGlIh~--g~-----~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--------~~~~~lL~~~L 438 (963)
T 4ady_A 374 AKFTATASLGVIHK--GN-----LLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--------RDTTDYLKNII 438 (963)
T ss_dssp HHHHHHHHHHHHTS--SC-----TTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--------HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc--Cc-----hHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHH
Confidence 35667777777643 21 1223333333332 34469999999999876432 23556666777
Q ss_pred cchh--------HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhh
Q psy14676 1226 RKNQ--------RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 1297 (1827)
Q Consensus 1226 rk~~--------r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~ 1297 (1827)
.+++ ..+|..+.-+|+.... |+. .++ ++..|.+++.+.+..++..+...|+-+..
T Consensus 439 ~~~~~~~~~~~~~~ir~gAaLGLGla~~--GS~-~ee----v~e~L~~~L~dd~~~~~~~AalALGli~v---------- 501 (963)
T 4ady_A 439 VENSGTSGDEDVDVLLHGASLGIGLAAM--GSA-NIE----VYEALKEVLYNDSATSGEAAALGMGLCML---------- 501 (963)
T ss_dssp HHHSSCCSCHHHHHHHHHHHHHHHHHST--TCC-CHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHT----------
T ss_pred cCccccccccccHHHHHHHHHHHHHHhc--CCC-CHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhc----------
Confidence 6554 5688888888886422 321 233 45555667766665555444444443322
Q ss_pred HHhhhhhcccccCCCchhhHHHHHHH-hcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc--CchhhHHHHHHHH
Q psy14676 1298 AASILPQIGRHTDLTSVADLKQVILN-AFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN--QPKRQYLLLHSLK 1374 (1827)
Q Consensus 1298 i~~~lgeiG~~~~~~~~~~l~~~~l~-~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~--~~~~q~~~l~aL~ 1374 (1827)
|.. ..+.+..++. +..+.++++|..|+.+||-+..|.- ...+.+++.+.. ++-.||....+++
T Consensus 502 --------GTg-----n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~-e~~~~li~~L~~~~dp~vRygaa~alg 567 (963)
T 4ady_A 502 --------GTG-----KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ-ELADDLITKMLASDESLLRYGGAFTIA 567 (963)
T ss_dssp --------TCC-----CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-GGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --------ccC-----CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 211 1233333333 3356789999999999998876653 345566666543 3445555544444
Q ss_pred HHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhh-hcCCHHHHHHHHHH
Q psy14676 1375 EIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL-KSNSALMRTTVLTA 1453 (1827)
Q Consensus 1375 Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l-~~~~~~~R~t~l~A 1453 (1827)
-.-. |... ...+..++..+.+ +.++.+|..|+.+||.+..-+|+. +|++.+++ .+.++.+|..+.-|
T Consensus 568 lAya-------GTGn-~~aIq~LL~~~~~---d~~d~VRraAViaLGlI~~g~~e~-v~rlv~~L~~~~d~~VR~gAalA 635 (963)
T 4ady_A 568 LAYA-------GTGN-NSAVKRLLHVAVS---DSNDDVRRAAVIALGFVLLRDYTT-VPRIVQLLSKSHNAHVRCGTAFA 635 (963)
T ss_dssp HHTT-------TSCC-HHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTSSSCSS-HHHHTTTGGGCSCHHHHHHHHHH
T ss_pred HHhc-------CCCC-HHHHHHHHHHhcc---CCcHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Confidence 3211 1111 1223333333333 567789999999999998888864 67777755 57899999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhh---h
Q psy14676 1454 VKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEF---Q 1530 (1827)
Q Consensus 1454 lk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~---~ 1530 (1827)
+..+...++. ..++..+..+++|++..||.+|+.+||.+..-.+.. .
T Consensus 636 LGli~aGn~~------------------------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 636 LGIACAGKGL------------------------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp HHHHTSSSCC------------------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHhccCCCc------------------------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 9877643321 145678888899999999999999999998655444 4
Q ss_pred HHHHHHHHHhhhc
Q psy14676 1531 VETIVDALCSNMV 1543 (1827)
Q Consensus 1531 ~~~~v~~l~~~l~ 1543 (1827)
+..+...+...+.
T Consensus 686 va~~l~~L~~~~~ 698 (963)
T 4ady_A 686 VADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666555554
No 70
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.62 E-value=1.1e-07 Score=109.93 Aligned_cols=229 Identities=15% Similarity=0.158 Sum_probs=162.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---H
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---L 114 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~ 114 (1827)
.|.+.+.+.++ ++.++..|+.+|..++....+.... .....++.+++.|+++++.+|..|+.+|++++...++. .
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46666667654 7899999999998777653221111 12257888999999999999999999999999743322 1
Q ss_pred HH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh-HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 115 YT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH-IERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 115 ~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~-l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
.. ..++.++..|.+ +++.+|+.++.+|+.++.....+.... -...+|.+++.++++++++|+.|..++..+....+.
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 11 256777777766 468999999999999987655442222 246899999999988999999998888777654322
Q ss_pred ccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHH
Q psy14676 193 EITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 271 (1827)
Q Consensus 193 e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l 271 (1827)
...... ..+++.+.+.+... +..+|..|+.+|..+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~--------------------------------------------~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSP--------------------------------------------NEQILQEALWALSNI 207 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCS--------------------------------------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHCCC--------------------------------------------CHHHHHHHHHHHHHH
Confidence 111111 34566777665320 136999999999999
Q ss_pred HHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHH
Q psy14676 272 IATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALL 313 (1827)
Q Consensus 272 ~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll 313 (1827)
+...++....+.+ .++|.|+..+++.++.+|..|..+++.+.
T Consensus 208 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 208 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred hcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 8654443333333 47899999999999999999999997654
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.58 E-value=1.5e-06 Score=116.30 Aligned_cols=308 Identities=14% Similarity=0.193 Sum_probs=223.3
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh-chh-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--hhhH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSC-NLQ-LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG--HRFA 154 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~-~~~-~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~--~~~~ 154 (1827)
..+..+++.+......=++.|..++..+...- ... .-..+++.+...+....+. +.++.+++.+|+..+ ..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 34555666666544555577777777776532 111 1124556666666442222 899999999997764 4789
Q ss_pred HhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCC
Q psy14676 155 EHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMD 234 (1827)
Q Consensus 155 p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d 234 (1827)
||+-.++|.++..+.+....+|+.|..|..+++..+|.+- +..++|.++.+|..
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a---~~~~~~~~~~~~~~----------------------- 144 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA---IKALLPHLTNAIVE----------------------- 144 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG---HHHHHHHHHHHHHH-----------------------
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHhcc-----------------------
Confidence 9999999999999988889999999999999999987642 46788888888732
Q ss_pred CcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 235 TEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 235 ~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
..-|..+.+|.++++.++...|+.+...++.++|.+...+.|-..+|+.+|..++..++.
T Consensus 145 --------------------~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 145 --------------------TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred --------------------ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 014999999999999999988988999999999999999999999999999999999885
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTS 394 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~ 394 (1827)
.... .-+++.+|.+++.+. +++. ...|+..|+.-..| ...-++-+.-++|.+.+
T Consensus 205 ~~~n-------------------~d~~~~~~~~~~~~~----~p~~--~~~~~~~l~~~tfv-~~v~~~~l~~~~p~l~r 258 (986)
T 2iw3_A 205 TVDN-------------------KDIERFIPSLIQCIA----DPTE--VPETVHLLGATTFV-AEVTPATLSIMVPLLSR 258 (986)
T ss_dssp GCCC-------------------TTTGGGHHHHHHHHH----CTTH--HHHHHHHHTTCCCC-SCCCHHHHHHHHHHHHH
T ss_pred cCCC-------------------cchhhhHHHHHHHhc----Chhh--hHHHHHHhhcCeeE-eeecchhHHHHHHHHHh
Confidence 4321 113555555555444 4532 34444443322111 11114566788899999
Q ss_pred HhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHH
Q psy14676 395 VAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIA 472 (1827)
Q Consensus 395 ~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~ 472 (1827)
.|.+ .+..+++.+.-.+.++++-.. ....||++.|+|-+.+
T Consensus 259 ~l~~-------------------------------------~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~ 301 (986)
T 2iw3_A 259 GLNE-------------------------------------RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKS 301 (986)
T ss_dssp HHTS-------------------------------------SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHH
T ss_pred hhcc-------------------------------------CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHH
Confidence 9842 234477888889999997666 5667999999999988
Q ss_pred hhc-chhhhhHHHHHHHHHHHHhhccc
Q psy14676 473 RFK-EREENVKSDIFHAYMALLKGTRT 498 (1827)
Q Consensus 473 ~~~-d~~~~Vr~~a~~~l~~L~~~~g~ 498 (1827)
... -..+++|.-+-+.+..|.+..+.
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 664 44899999999999999877663
No 72
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.45 E-value=1.7e-05 Score=100.15 Aligned_cols=358 Identities=11% Similarity=0.042 Sum_probs=210.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh--HH
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--LY 115 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~--~~ 115 (1827)
+|.|+..+.++ ++.++..|+.+|..++.+-.+.-.. ...-.++.|+..|.++++.++..|+.||.+++..-++. .+
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 57888888765 7899999999999987432221101 12346888999999999999999999999999752221 11
Q ss_pred --HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH-hHHHHHHHHHhhcc--------cC--------chHHH
Q psy14676 116 --TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE-HIERVMPLILKYSR--------EE--------DDELR 176 (1827)
Q Consensus 116 --~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p-~l~~i~p~l~~~~~--------~~--------~delR 176 (1827)
...++.+++.|...++..+++.++.+|+.++.. + .... .+...+|.+++.+. .+ +.+++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 123678888887556789999999999999976 2 2222 23378888888872 22 34455
Q ss_pred HHHHHHHHHHHHhCCCccccch---HHHHHHHHHHhccC-----CCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCC
Q psy14676 177 EFCLQACEAFVQRCPKEITPHI---QSITELCLTYITYD-----PNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN 248 (1827)
Q Consensus 177 e~al~ale~~~~~~p~e~~p~l---~~ii~~ll~~l~~d-----pn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~ 248 (1827)
..|..++..++.. |+ .+..+ +.+++.+++++... ++-
T Consensus 161 ~~a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~--------------------------------- 205 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDD--------------------------------- 205 (457)
T ss_dssp HHHHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTC---------------------------------
T ss_pred HHHHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHhhccccCCch---------------------------------
Confidence 5777777766643 32 11111 14566666655420 100
Q ss_pred CCCCCccchhhHHHHHHH-----------------------------------HHHHHHH---------H------cCCc
Q psy14676 249 EYSDDDDMSWKVRRAAAK-----------------------------------CLEAIIA---------T------RRDL 278 (1827)
Q Consensus 249 e~sdddD~sWkVRraAak-----------------------------------~L~~l~~---------~------~~~~ 278 (1827)
++...+.. |++.... . .++-
T Consensus 206 ----------~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (457)
T 1xm9_A 206 ----------KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275 (457)
T ss_dssp ----------TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCG
T ss_pred ----------HHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchH
Confidence 00111111 1111100 0 0111
Q ss_pred hhh-hHHhhhHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhH-Hhhh--HHHHHHHHH
Q psy14676 279 IGD-MYRLVSPPLIARFK-EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLL-STQV--PSLVKALQC 353 (1827)
Q Consensus 279 l~~-~~~~v~p~L~~~l~-e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l--p~Iv~~l~~ 353 (1827)
... +-..++|.|+..++ ..++.++..++.+++.+..... .....+ +..+ ...+|.+.+
T Consensus 276 ~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~-----------------~~~~~~~~~~v~~~~~l~~Lv~ 338 (457)
T 1xm9_A 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG-----------------LMSSGMSQLIGLKEKGLPQIAR 338 (457)
T ss_dssp GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS-----------------SHHHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC-----------------cchHHHHHHHHHHcCCchHHHH
Confidence 111 12345666777764 3468999999999998874211 011112 1122 235678888
Q ss_pred HhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy14676 354 QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD 433 (1827)
Q Consensus 354 ~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~ 433 (1827)
.|++.+.++|..+..+++.++..- ..-...-...+|.+.+.|... +. +
T Consensus 339 LL~~~~~~v~~~A~~aL~nls~~~-~~~~~i~~~~i~~Lv~lL~~~--------------~~-------------~---- 386 (457)
T 1xm9_A 339 LLQSGNSDVVRSGASLLSNMSRHP-LLHRVMGNQVFPEVTRLLTSH--------------TG-------------N---- 386 (457)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSG-GGHHHHHHHTHHHHHHTTTSC--------------CS-------------C----
T ss_pred HHhCCCHhHHHHHHHHHHHHhcCH-HHHHHHHHhhhHHHHHhccCC--------------CC-------------C----
Confidence 899999999998888889887632 111111134677788887321 00 0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhhhhhhH-HhhhhhHHHhhcch-hhhhHHHHHHHHHHHH
Q psy14676 434 DDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKER-EENVKSDIFHAYMALL 493 (1827)
Q Consensus 434 ~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~~L~~~~~d~-~~~Vr~~a~~~l~~L~ 493 (1827)
....-.+..+++.++.++....++.-..+. ...++.+...+... ..+|+..|...+..+.
T Consensus 387 ~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 001123666788888887753332111111 24577777777777 7899999998766554
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.42 E-value=7.8e-06 Score=85.01 Aligned_cols=206 Identities=16% Similarity=0.236 Sum_probs=144.2
Q ss_pred hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCc
Q psy14676 1214 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNA 1292 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~ 1292 (1827)
-.+++..+.++|.+.-|.++++++..+.++...++. .+..++..|..+++ +....+.+.....++.++...|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-----l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-----GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-----HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 356778888899988999999999999999887654 45566666666665 445556666666677666655531
Q ss_pred cchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhh----hcC-chhhH
Q psy14676 1293 LVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEI----ENQ-PKRQY 1367 (1827)
Q Consensus 1293 ~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i----~~~-~~~q~ 1367 (1827)
...++|+++.-+.-+.+..|.+.+++||+|+..| +..+|.|...+ .+. ...+.
T Consensus 105 ---------------------v~~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~l~~~v~rdi~smltskd~~Dkl 162 (253)
T 2db0_A 105 ---------------------VKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASIVRDFMSMLSSKNREDKL 162 (253)
T ss_dssp ---------------------HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTSCSSHHHHH
T ss_pred ---------------------HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCChHHHH
Confidence 3568899999999999999999999999998877 44556665544 321 12333
Q ss_pred HHHHHHHHHHhhccccccchhh---hhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC--cchHHHHHhhhcC
Q psy14676 1368 LLLHSLKEIISWQSTSTSGVAQ---LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS--NLLPRLQESLKSN 1442 (1827)
Q Consensus 1368 ~~l~aL~Eii~~~~~s~~g~~~---L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~--~~lP~L~~~l~~~ 1442 (1827)
..|.-+.- .|.++ ..||+|. |+..+.+.+|-+|..+-|+||.|+..+|. .++-.-.+-+.+.
T Consensus 163 ~aLnFi~a---------lGen~~~yv~PfLpr----L~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~ 229 (253)
T 2db0_A 163 TALNFIEA---------MGENSFKYVNPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDT 229 (253)
T ss_dssp HHHHHHHT---------CCTTTHHHHGGGHHH----HHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHH---------HhccCccccCcchHH----HHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCc
Confidence 33332211 23333 3466555 45555677899999999999999999986 3333333445677
Q ss_pred CHHHHHHHHHHHHHHhh
Q psy14676 1443 SALMRTTVLTAVKFTIS 1459 (1827)
Q Consensus 1443 ~~~~R~t~l~Alk~~~~ 1459 (1827)
+..+...+..++..+..
T Consensus 230 S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 230 SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888876653
No 74
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.6e-06 Score=96.78 Aligned_cols=188 Identities=15% Similarity=0.092 Sum_probs=140.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCC-----chhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q psy14676 254 DDMSWKVRRAAAKCLEAIIATRRD-----LIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPN 328 (1827)
Q Consensus 254 dD~sWkVRraAak~L~~l~~~~~~-----~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~ 328 (1827)
.+..||.|..|...|..++...+. .....|....+.+.+.++|.+-.|...++.++..++...+..
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~--------- 89 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS--------- 89 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-----------
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh---------
Confidence 467899999999999888866442 122246667888889999999999999999999998653321
Q ss_pred CCCCCCChHhhHHhhhHHHHHHHHH-HhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCC
Q psy14676 329 QMDQEDSPLCLLSTQVPSLVKALQC-QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGE 407 (1827)
Q Consensus 329 ~~~~~~~~~~~l~~~lp~Iv~~l~~-~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~ 407 (1827)
.+........+..++|.++. .|.|..+.+|..+...+-.++.... ....+++.+...++
T Consensus 90 -----~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~---------- 149 (278)
T 4ffb_C 90 -----SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFE---------- 149 (278)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGG----------
T ss_pred -----hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHh----------
Confidence 11234556678888888875 4889999999988888777765432 12344555555542
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hh--hhhhHHhhhhhHHHhhcchhhhhHHH
Q psy14676 408 GGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DL--IGDMYRLVSPPLIARFKEREENVKSD 484 (1827)
Q Consensus 408 ~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~--f~~~~~~l~~~L~~~~~d~~~~Vr~~ 484 (1827)
..+|++|.+++.+|..+...+| .. ..+.++.+++.+..++.|+.+.||.+
T Consensus 150 ---------------------------~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~a 202 (278)
T 4ffb_C 150 ---------------------------KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQ 202 (278)
T ss_dssp ---------------------------CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHH
T ss_pred ---------------------------ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3689999999999999999988 33 34577889999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy14676 485 IFHAYMALLKGTR 497 (1827)
Q Consensus 485 a~~~l~~L~~~~g 497 (1827)
|...+.++.+.+|
T Consensus 203 A~~l~~~ly~~~G 215 (278)
T 4ffb_C 203 TMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998888
No 75
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.35 E-value=9.5e-05 Score=93.40 Aligned_cols=341 Identities=13% Similarity=0.105 Sum_probs=206.0
Q ss_pred HHHHHHhhhhh--hhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHh
Q psy14676 1178 LPILLDRLRNE--ITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEM 1255 (1827)
Q Consensus 1178 L~~Ll~~L~~e--~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~ 1255 (1827)
+|.|+..|+.+ ..+..|+.++..++.........-.-..++|.|..+|+..+..++..+..+|..+.... .......
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 56677777644 45899999999988532111101112457899999999888899999999999987631 1111111
Q ss_pred -HHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhc--------
Q psy14676 1256 -LNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAF-------- 1325 (1827)
Q Consensus 1256 -~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~-------- 1325 (1827)
-.+.+|.|..++. +.+..++..+..+|..++.. +..- ..++ ...+|.+++.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~--~~i~---------------~g~i~~Lv~ll~~~~s~~~ 144 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELK--EELI---------------ADALPVLADRVIIPFSGWC 144 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTH--HHHH---------------HHHHHHHHHHTTHHHHTCC
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhH--HHHH---------------hccHHHHHHHHhccccccc
Confidence 1245788888998 77899999999999998875 3210 0011 13445555555
Q ss_pred CC--------CCHhHHHHHHHHHhhhhhhh-----h---hhhHHHHHHhhhc-------CchhhHHHHHHHHHHHh----
Q psy14676 1326 TP--------TSEEVKSAASYTLGSIAVGN-----L---QQYVPFVLKEIEN-------QPKRQYLLLHSLKEIIS---- 1378 (1827)
Q Consensus 1326 ~~--------~s~eVr~aAa~aLG~i~~~~-----l---~~~LP~Il~~i~~-------~~~~q~~~l~aL~Eii~---- 1378 (1827)
.+ .++++...|+.+|++++.+. + ...+|.++..+.. +.+.....+..|..+-.
T Consensus 145 ~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~ 224 (457)
T 1xm9_A 145 DGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA 224 (457)
T ss_dssp ---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH
T ss_pred cCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhc
Confidence 22 24566679999999876431 1 1356666665543 11222222222222210
Q ss_pred ------------------------hccc-------------------cccchhhhhchHHHHHHHHhhhhc-CCchhHHH
Q psy14676 1379 ------------------------WQST-------------------STSGVAQLQQFVPAIWAQLFLHCE-CQEEGTRN 1414 (1827)
Q Consensus 1379 ------------------------~~~~-------------------s~~g~~~L~~~~~~i~~~L~~~~~-~~~e~vR~ 1414 (1827)
.... ...|.+.+ +-....+.|...+. +.++.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~l~~L~~lL~~~~~~~~~e 302 (457)
T 1xm9_A 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL--YHSDAIRTYLNLMGKSKKDATLE 302 (457)
T ss_dssp HSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG--GSHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH--hCcchHHHHHHHHhhcCCHHHHH
Confidence 0000 00000001 11223334444332 44577899
Q ss_pred HHHHHHHHhhccC-------------CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhh
Q psy14676 1415 VVAECLGKLTLID-------------PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSEL 1481 (1827)
Q Consensus 1415 ~aAecLGkL~~~~-------------p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l 1481 (1827)
.++.+|+.|+..+ ....+|.|.+++.+++..+|..++.+|+.+..+. ..+
T Consensus 303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~------~~~----------- 365 (457)
T 1xm9_A 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP------LLH----------- 365 (457)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG------GGH-----------
T ss_pred HHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH------HHH-----------
Confidence 9999999998633 2467899999999999999999999999997532 111
Q ss_pred hhcccccChhHHHHHHHHHHHhhcCCch------HHHHHHHHHhhhhhhhhhhh----hHHHHHHHHHhhhccc-ccccc
Q psy14676 1482 QKDSIKLDDDSERKVVKMLLRLLEDKNG------EVQNLAVKCLGPLVNKVKEF----QVETIVDALCSNMVSD-KEQLR 1550 (1827)
Q Consensus 1482 ~~~~~~~~~~~~~~l~~~ll~~l~D~~~------~Vr~~a~~~Lg~L~~~l~~~----~~~~~v~~l~~~l~~~-~~~~~ 1550 (1827)
. .+....+|.++.+|..+++ .|...++.+++.++..-+.. .-...+.++..-+.++ ++
T Consensus 366 --~------~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~--- 434 (457)
T 1xm9_A 366 --R------VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP--- 434 (457)
T ss_dssp --H------HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH---
T ss_pred --H------HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH---
Confidence 0 0123467999999987653 68888999998887533211 0123344444444444 33
Q ss_pred cCCccchhHHHHHHHhhhhccC
Q psy14676 1551 DISSIGLKTVISVVYCLGDRNS 1572 (1827)
Q Consensus 1551 ~~~~~~vRr~Al~~l~s~a~~~ 1572 (1827)
++++.|...|.....++
T Consensus 435 -----~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 435 -----KAAEAARLLLSDMWSSK 451 (457)
T ss_dssp -----HHHHHHHHHHHTTSSST
T ss_pred -----HHHHHHHHHHHHHHcch
Confidence 89999999998776543
No 76
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.34 E-value=3.5e-06 Score=94.27 Aligned_cols=180 Identities=17% Similarity=0.140 Sum_probs=134.4
Q ss_pred hhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhh--------hhHHHHHHhhhcC-chhhHHHHHHHHHHHhhcccccc
Q psy14676 1315 ADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQ--------QYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTS 1385 (1827)
Q Consensus 1315 ~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~--------~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~ 1385 (1827)
+...+.+...+.++++++|..|+.+|++++.++-. ..+|.+++.+.++ +..+...+++|+.+...
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~------ 84 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG------ 84 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC------
Confidence 45778899999999999999999999998754321 3678899988763 45677788888887531
Q ss_pred chhhhhc-hH-HHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHH
Q psy14676 1386 GVAQLQQ-FV-PAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVK 1455 (1827)
Q Consensus 1386 g~~~L~~-~~-~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk 1455 (1827)
....+. .+ ...++.|++.+.+.+..+|..++.+|+.|+..++ ...+|.|.++++++++.+|..++.+|.
T Consensus 85 -~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 85 -GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111111 11 2245677777777788899999999999997554 357899999999999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhh
Q psy14676 1456 FTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVN 1524 (1827)
Q Consensus 1456 ~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~ 1524 (1827)
.+....+ ..+ ..+ .....++.++.++.++++.||..|..+|+.|+.
T Consensus 164 ~l~~~~~-----~~~--------~~~----------~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGN-----EQK--------QAV----------KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCH-----HHH--------HHH----------HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCc-----HHH--------HHH----------HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9986421 111 000 123467999999999999999999999999874
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.33 E-value=4.1e-05 Score=79.70 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhhch
Q psy14676 34 VCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLS-SPRQAVRKRTIVALSHLVMSCNL 112 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~-~~~~~VRk~Ai~aL~~l~~~~~~ 112 (1827)
.-++++-.|+..++++ -|-|+..|+.++..+.+..+.. +..++..++-.+. +..-..-..-..++|.++..- +
T Consensus 29 ~d~~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el----~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDL----YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P 102 (253)
T ss_dssp HCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGG----HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H
T ss_pred hhHHHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHH----HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H
Confidence 4467777888888765 7999999999999999887764 4456777777765 444455455567899988865 5
Q ss_pred hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 113 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 113 ~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
+...++++.+...+.-. ++..|-..-.+++.+++..|..++..+.+++. .+++.+++=|-.|+.+++++...-++
T Consensus 103 e~v~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~v~rdi~s----mltskd~~Dkl~aLnFi~alGen~~~ 177 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMASIVRDFMS----MLSSKNREDKLTALNFIEAMGENSFK 177 (253)
T ss_dssp HHHHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----HTSCSSHHHHHHHHHHHHTCCTTTHH
T ss_pred HHHHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHHHHHHHHH----HhcCCChHHHHHHHHHHHHHhccCcc
Confidence 56788888888888664 68899999999999999999887665555543 34455666666666655555555556
Q ss_pred ccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHH
Q psy14676 193 EITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAII 272 (1827)
Q Consensus 193 e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~ 272 (1827)
.+.||+|.++.++ || +| --||.+|.++|..++
T Consensus 178 yv~PfLprL~aLL-----~D-------~d------------------------------------eiVRaSaVEtL~~lA 209 (253)
T 2db0_A 178 YVNPFLPRIINLL-----HD-------GD------------------------------------EIVRASAVEALVHLA 209 (253)
T ss_dssp HHGGGHHHHHGGG-----GC-------SS------------------------------------HHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHH-----cC-------cc------------------------------------hhhhHHHHHHHHHHH
Confidence 7788888766543 21 00 059999999999999
Q ss_pred HHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHH
Q psy14676 273 ATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 313 (1827)
Q Consensus 273 ~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll 313 (1827)
...|. +..++-.-.+.|+++.+.|...+-.+++.+.
T Consensus 210 ~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 210 TLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp TSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 76554 5566666778999999999999999998876
No 78
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.32 E-value=0.00017 Score=92.37 Aligned_cols=368 Identities=10% Similarity=0.041 Sum_probs=218.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--- 113 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~--- 113 (1827)
-+|.|++.+.++ ++.++.+|..+|..++....+.-.. ...-.++.|+..|.++++.||..|+.||.+++...+++
T Consensus 49 ~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 468888888765 7899999999998887533221101 11235688999999999999999999999999742111
Q ss_pred HH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc------------------ccCch
Q psy14676 114 LY--TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS------------------REEDD 173 (1827)
Q Consensus 114 ~~--~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~------------------~~~~d 173 (1827)
.+ ..-++.|+..|....+..+++.+..+|..++.....+.. -...-+|.+++.+ ..+++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~-I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH-HHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 11 124677888886655678899999999999874321111 1233456665543 12357
Q ss_pred HHHHHHHHHHHHHHHhCCCccccc---hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCC
Q psy14676 174 ELREFCLQACEAFVQRCPKEITPH---IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEY 250 (1827)
Q Consensus 174 elRe~al~ale~~~~~~p~e~~p~---l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~ 250 (1827)
++++.|..+|..+.... ++.+.. ...+++.++.++... ....
T Consensus 207 ~V~~nAa~~L~NLs~~~-~~~R~~i~~~~Gli~~LV~~L~~~-------~~~~--------------------------- 251 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSER-SEARRKLRECDGLVDALIFIVQAE-------IGQK--------------------------- 251 (584)
T ss_dssp HHHHHHHHHHHHHTSSC-HHHHHHHHHSTTHHHHHHHHHHHH-------HHTT---------------------------
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHcCCcHHHHHHHHHHh-------hccc---------------------------
Confidence 88888887777765422 111111 123555666655320 0000
Q ss_pred CCCccchhhHHHHHHHHHHHHHHH-------------------------cCCchhhhH-HhhhHHHHhhcC-CCCHhHHH
Q psy14676 251 SDDDDMSWKVRRAAAKCLEAIIAT-------------------------RRDLIGDMY-RLVSPPLIARFK-EREENVKS 303 (1827)
Q Consensus 251 sdddD~sWkVRraAak~L~~l~~~-------------------------~~~~l~~~~-~~v~p~L~~~l~-e~ee~VR~ 303 (1827)
+.+.+...-|+-+|..+... .+.-+..++ ..+++.|+..++ ...+.++.
T Consensus 252 ----~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 252 ----DSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp ----CCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred ----CccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 00002222233333222211 111122222 245677788874 45799999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChH-hhHHhhh--HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccc
Q psy14676 304 DIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPL-CLLSTQV--PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC 380 (1827)
Q Consensus 304 aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l--p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~ 380 (1827)
.|+.|+..++... +.. ..++..+ ...+|.+.+.|..++.+++..+..+|+.|+..-..
T Consensus 328 ~Aa~AL~nL~ag~------------------~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~- 388 (584)
T 3l6x_A 328 ASAGAIQNLCAGR------------------WTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN- 388 (584)
T ss_dssp HHHHHHHHHHSSC------------------SHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC-
T ss_pred HHHHHHHHHHcCC------------------ccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH-
Confidence 9999999887321 111 1222222 34588889999999999999999999999864321
Q ss_pred ccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhh
Q psy14676 381 LAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG 460 (1827)
Q Consensus 381 l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~ 460 (1827)
-...-...+|.+.+.|..... .+. ...+-.+...|+.+|++++....+.-.
T Consensus 389 ~~~I~~g~ip~LV~LL~~~~~----------~~~-------------------~~~s~~v~~~a~~tL~NL~a~~~~~~~ 439 (584)
T 3l6x_A 389 KELIGKHAIPNLVKNLPGGQQ----------NSS-------------------WNFSEDTVISILNTINEVIAENLEAAK 439 (584)
T ss_dssp HHHHHHHHHHHHHHTSSSSSC----------SGG-------------------GTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCHHHHHHHhcCCcc----------ccc-------------------ccchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 111123567888888742100 000 000123677888888888743332222
Q ss_pred hhH-HhhhhhHHHhhcch--hhhhHHHHHHHHHHHHh
Q psy14676 461 DMY-RLVSPPLIARFKER--EENVKSDIFHAYMALLK 494 (1827)
Q Consensus 461 ~~~-~~l~~~L~~~~~d~--~~~Vr~~a~~~l~~L~~ 494 (1827)
..+ ...+|.|...+.+. .+++++.|...|..+..
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 111 34688888888765 77899999888887753
No 79
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.31 E-value=1.2e-05 Score=92.00 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 257 SWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 257 sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
+|+-|.+|...|...+...++.+...+.-+++++.-+|.+.+..|-..++..+..++...+....
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y--------------- 123 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET--------------- 123 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc---------------
Confidence 58999999888888777766555556666789998899999999999999999988865542110
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCc
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTE 416 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e 416 (1827)
.........++|.++..+.|...+||..+-.++..+..+.|. ..+.+.+...++
T Consensus 124 -~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~k------------------- 177 (266)
T 2of3_A 124 -PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALK------------------- 177 (266)
T ss_dssp -CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGG-------------------
T ss_pred -cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHc-------------------
Confidence 112344678899999999999999999999999999988764 235666666663
Q ss_pred ccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhh---hhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 417 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVS---PPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 417 ~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~---~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
.+|||.|.+.+..+..+..++|... ...+ |.+.+.+.|+..+||.+|+.++.++-
T Consensus 178 ------------------sKN~R~R~e~l~~l~~li~~~G~~~----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 178 ------------------SKNARQRSECLLVIEYYITNAGISP----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp ------------------CSCHHHHHHHHHHHHHHHHHHCSGG----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred ------------------cCCHHHHHHHHHHHHHHHHhcCCCc----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2589999999999999999999442 3456 88899999999999999999999998
Q ss_pred hhcc
Q psy14676 494 KGTR 497 (1827)
Q Consensus 494 ~~~g 497 (1827)
...|
T Consensus 236 ~~~G 239 (266)
T 2of3_A 236 KFEG 239 (266)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8777
No 80
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.30 E-value=5.6e-05 Score=96.77 Aligned_cols=350 Identities=11% Similarity=0.066 Sum_probs=209.8
Q ss_pred hhhhhHHHHHHhhhhh--hhHHHHHHHHHHHhcCCCccccch-h-hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCC
Q psy14676 1173 ELPVCLPILLDRLRNE--ITRLTTVKALTKIAASPLRIDLRP-I-LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYP 1248 (1827)
Q Consensus 1173 ~l~~lL~~Ll~~L~~e--~tR~~av~al~~ia~~~~~~dl~p-~-~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~ 1248 (1827)
.....+|.|++.|+.. ..+..|+.+|..++.... +-.. + -...+|.|..+|+..+..++..++.||..|.....
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~--~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND--KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh--HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 3455677788888644 347888899998885321 0011 1 13478999999999999999999999999865211
Q ss_pred CCcChH-hHHHHHHHhhhhcCC-CChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHH---
Q psy14676 1249 SAISTE-MLNKVTVELAPLVSE-SDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILN--- 1323 (1827)
Q Consensus 1249 ~~l~~~-~~~~ll~~L~~ll~d-~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~--- 1323 (1827)
..-... .-.+.++.|..+|.. .+..++..+..+|..++.. +.. ...++ .. .++.++.+++.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~--k~~I~-------~~----alp~Lv~LL~~p~s 188 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSI--KMEIV-------DH----ALHALTDEVIIPHS 188 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGG--HHHHH-------HH----THHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh--hHHHH-------hc----cHHHHHHHHhcccc
Confidence 110011 112467888888875 6788888888888887752 210 00111 00 12333333211
Q ss_pred -----------hcCCCCHhHHHHHHHHHhhhhhhhh---------hhhHHHHHHhhhc-------CchhhHHHHHHHHHH
Q psy14676 1324 -----------AFTPTSEEVKSAASYTLGSIAVGNL---------QQYVPFVLKEIEN-------QPKRQYLLLHSLKEI 1376 (1827)
Q Consensus 1324 -----------~~~~~s~eVr~aAa~aLG~i~~~~l---------~~~LP~Il~~i~~-------~~~~q~~~l~aL~Ei 1376 (1827)
....++++|+.+|+.+|.+++..+- .-..+.++..++. +.+.+..++++|.-+
T Consensus 189 g~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NL 268 (584)
T 3l6x_A 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268 (584)
T ss_dssp CCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHh
Confidence 1123468999999999999764321 1233455555432 223344455555443
Q ss_pred Hhhcccc--c------------cc-----hhhhhc-hHHHHHHHHhhhhc-CCchhHHHHHHHHHHHhhccC--------
Q psy14676 1377 ISWQSTS--T------------SG-----VAQLQQ-FVPAIWAQLFLHCE-CQEEGTRNVVAECLGKLTLID-------- 1427 (1827)
Q Consensus 1377 i~~~~~s--~------------~g-----~~~L~~-~~~~i~~~L~~~~~-~~~e~vR~~aAecLGkL~~~~-------- 1427 (1827)
-...... . .| ...+.. +-+...+.|+..+. +..+.++..|+.+|..|+...
T Consensus 269 s~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~ 348 (584)
T 3l6x_A 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348 (584)
T ss_dssp HTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred hccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHH
Confidence 2211000 0 00 001111 22334455555553 456789999999999997543
Q ss_pred ----CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh
Q psy14676 1428 ----PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL 1503 (1827)
Q Consensus 1428 ----p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~ 1503 (1827)
-..-+|.|.+++.+++..++..++.||+++..+.. .-.. +....+|.|+.+
T Consensus 349 ~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~-----------------------I~~g~ip~LV~L 403 (584)
T 3l6x_A 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKEL-----------------------IGKHAIPNLVKN 403 (584)
T ss_dssp HHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHH-----------------------HHHHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHH-----------------------HHhCCHHHHHHH
Confidence 12458999999999999999999999999986432 1111 124577999999
Q ss_pred hcCC--------chHHHHHHHHHhhhhhhhhhhhhHH-----HHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhc
Q psy14676 1504 LEDK--------NGEVQNLAVKCLGPLVNKVKEFQVE-----TIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDR 1570 (1827)
Q Consensus 1504 l~D~--------~~~Vr~~a~~~Lg~L~~~l~~~~~~-----~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~ 1570 (1827)
|.++ ...++..|..+|+.|+..- .+... ..|..|..-+.+.+ .+..+++.|..+|..+..
T Consensus 404 L~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~~g~I~~Lv~LL~s~~------~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 404 LPGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRETQGIEKLVLINKSGN------RSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHTCSS------SCHHHHHHHHHHHHHHHT
T ss_pred hcCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCC------CChHHHHHHHHHHHHHHc
Confidence 8876 3578899999999887432 22222 23344444443321 112789999999987764
No 81
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.27 E-value=0.0026 Score=82.73 Aligned_cols=529 Identities=11% Similarity=0.106 Sum_probs=286.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH-Hh--hhhhhhHHHHHHHHHHHhcCCCccccchhhh-hhHhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILL-DR--LRNEITRLTTVKALTKIAASPLRIDLRPILT-DGIPIL 1221 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll-~~--L~~e~tR~~av~al~~ia~~~~~~dl~p~~~-~~l~~L 1221 (1827)
-...+||.-++-.+.++.+..++.....+...+..++ +. -........++.++..+-......--.-|+. ...+.+
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l 260 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLF 260 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHH
Confidence 3468899999999999999888777677777666554 11 1122335666666665532111000001111 123334
Q ss_pred hhhh-cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHh
Q psy14676 1222 GSFL-RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAAS 1300 (1827)
Q Consensus 1222 ~~~L-rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~ 1300 (1827)
.+.+ ++.+..+..++++.|...+..-. .-.-.....+++|..++.. .+++..++.+|+++......
T Consensus 261 ~~~~~~~~~~~~~~a~L~lLsaACi~~~--cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~--------- 327 (778)
T 3opb_A 261 KKRVFEEQDLQFTKELLRLLSSACIDET--MRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKL--------- 327 (778)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCCSHH--HHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC---------
T ss_pred HHHHhcccchHHHHHHHHHHHHHhCCcH--HHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC---------
Confidence 3333 22345566677776665433111 1111334566777777754 47888888888877653210
Q ss_pred hhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh--------hhhhhHHHHHHhhhc--CchhhHHHH
Q psy14676 1301 ILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG--------NLQQYVPFVLKEIEN--QPKRQYLLL 1370 (1827)
Q Consensus 1301 ~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~--------~l~~~LP~Il~~i~~--~~~~q~~~l 1370 (1827)
...++.++.+.+.+.|.++..+.|..|..+|+-+... .-+.+++.+++.++. .....|-++
T Consensus 328 ---------~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal 398 (778)
T 3opb_A 328 ---------TCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLL 398 (778)
T ss_dssp ---------TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred ---------CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHH
Confidence 0123467999999999987777788898888865432 224578888888764 233444444
Q ss_pred HHHHHHHhhccc-c--ccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHH-HhhccCCCcchHHHHHhhhcCCHHH
Q psy14676 1371 HSLKEIISWQST-S--TSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG-KLTLIDPSNLLPRLQESLKSNSALM 1446 (1827)
Q Consensus 1371 ~aL~Eii~~~~~-s--~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLG-kL~~~~p~~~lP~L~~~l~~~~~~~ 1446 (1827)
..|.-+...... + +.+-..|++|...=.|.- ...+..-.-.+...- +-..+.-...+|.|..+++++++.+
T Consensus 399 ~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~-----~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~ 473 (778)
T 3opb_A 399 VIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAA-----DKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNC 473 (778)
T ss_dssp HHHHHTTCCCCCCCCCCC-----------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHH
T ss_pred HHHHHhcCCCcccchhhhhhhhhhhhccccCccc-----CcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHH
Confidence 433333221000 0 001123444543211100 001110011111111 1112233468899999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchH---HHHHHHHHhhhhh
Q psy14676 1447 RTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE---VQNLAVKCLGPLV 1523 (1827)
Q Consensus 1447 R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~---Vr~~a~~~Lg~L~ 1523 (1827)
|..++.+|..+-.+. ..| ..+ +.+..++.++.++...... +|.+|+.+|.++.
T Consensus 474 re~A~~aL~nLS~d~------~~R-------------~~l-----vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 474 KQQVVRIIYNITRSK------NFI-------------PQL-----AQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHHHHHHHHHHHTSG------GGH-------------HHH-----HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH------HHH-------------HHH-----HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 999999999886431 112 000 1234568888888777554 8999999999998
Q ss_pred hhhhhhh------HHHHHHHHHhhhcccccccc-cCCc---c-ch-hHHHHHHHhhhhccC-C--CCcccchhhhhh--h
Q psy14676 1524 NKVKEFQ------VETIVDALCSNMVSDKEQLR-DISS---I-GL-KTVISVVYCLGDRNS-S--SNMKIDTLAFTH--T 1586 (1827)
Q Consensus 1524 ~~l~~~~------~~~~v~~l~~~l~~~~~~~~-~~~~---~-~v-Rr~Al~~l~s~a~~~-p--~li~~~~~~~~~--~ 1586 (1827)
-..+... ....|.||+.-+..+..... +..+ . .. ++-|+.||.-.|... + +-++ ..+-+ .
T Consensus 530 is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r---~~Ii~~~g 606 (778)
T 3opb_A 530 IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC---KHIVSTKV 606 (778)
T ss_dssp HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH---HHHHHSHH
T ss_pred hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH---HHHHHhcC
Confidence 5443222 12567777776653211000 0000 0 11 667777765555432 1 1110 00001 1
Q ss_pred hcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhc---cC-C--hHH---HH
Q psy14676 1587 LLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLD---RV-D--MFE---FL 1657 (1827)
Q Consensus 1587 ~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~---~~-~--~~~---~~ 1657 (1827)
.++.+...++ ++.-.+|++|.||+-.|..+... ++ + .+. -+
T Consensus 607 a~~~L~~LL~------------------------------s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 607 YWSTIENLML------------------------------DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNF 656 (778)
T ss_dssp HHHHHHHGGG------------------------------CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHH
T ss_pred HHHHHHHHHh------------------------------CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccH
Confidence 2222222222 34557999999999999974332 22 1 011 14
Q ss_pred HHHHhhccc-hhhHHHHHHHHHHHHHhhChHHHHHHH--HHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy14676 1658 NHLESGLRD-HYDIKMLTYLMLARLAQMTPAALLQRL--ERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAAL 1734 (1827)
Q Consensus 1658 ~~~~~gl~d-~~dik~l~~~~l~~l~~~~p~~~~~~l--~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~~~l 1734 (1827)
..++.-++. +.++|.-+.-.|.-+..-+|.....-+ ...++.|-..|... ...++++..++-++..|
T Consensus 657 ~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~----------~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 657 NILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ----------IDDIELRQRLLMLFFGL 726 (778)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT----------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc----------CCCHHHHHHHHHHHHHH
Confidence 556655544 557888888888888777776543323 35667776666532 12458888888888888
Q ss_pred hcccCCCCC-hhHHHHHHHHhCCchHHHHHHHHhcccCC
Q psy14676 1735 LTIQDADKN-PALNDFVATIKNSPELQTIFDSMQKDSSL 1772 (1827)
Q Consensus 1735 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1772 (1827)
....+.+.. ..|..| ..++.++.-...|.+.++.
T Consensus 727 ~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~lk~~~~ 761 (778)
T 3opb_A 727 FEVIPDNGTNEVYPLL----QENQKLKDALNMSLKRGDS 761 (778)
T ss_dssp HTTCCSTTTTSCCHHH----HSCHHHHHHHHHHHSSSSS
T ss_pred HHhhccCCChHHHHHH----hcChHHHHHHHHHHhCCCc
Confidence 765444443 445544 4677788888888877744
No 82
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.23 E-value=7.2e-05 Score=93.53 Aligned_cols=255 Identities=11% Similarity=0.022 Sum_probs=164.9
Q ss_pred HHHHHHhhhcccC-------CCCchHHHHHHhcc-----------CChhhHHHHHHHHHHHHHhccccccccccchhhhh
Q psy14676 1019 VVAECLGKLTLID-------PSNLLPRLQESLKS-----------NSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIY 1080 (1827)
Q Consensus 1019 ~a~e~Lg~L~~~~-------~~~llP~L~~~L~s-----------~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~ 1080 (1827)
.|+.+|++++.-. -...+|.|.+.+.. .+...+..+++.|.-+....... +.. +
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-k~~-------i 238 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KAT-------L 238 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-HHH-------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-HHH-------H
Confidence 4566676664331 13468888888842 23567889999999766543211 100 0
Q ss_pred hhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHH--HHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14676 1081 SFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTS--DIYQCTLVRLKAADIDQEVKERAISC 1158 (1827)
Q Consensus 1081 ~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~--~l~~~ll~~L~~~D~d~eVre~Ai~a 1158 (1827)
......+|.++..+..+++.++..|.++++.|... .....+..+. ..++.++..|. ...+.++++.|+.+
T Consensus 239 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-------~~~~~k~~I~~~GaI~~LV~lLl-~s~~~~v~~~A~~a 310 (458)
T 3nmz_A 239 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-------ADVNSKKTLREVGSVKALMECAL-EVKKESTLKSVLSA 310 (458)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-------CCHHHHHHHHHTTHHHHHHHHHT-TCCSHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHcCCHHHHHHHHh-cCCCHHHHHHHHHH
Confidence 11345789999999999999999999998887621 0011112221 23455555544 24578999999999
Q ss_pred HHHHHHHhhhhhhhh---hhhhHHHHHHhhhhhh------hHHHHHHHHHHHhcC--CCccccchhh-hhhHhhhhhhhc
Q psy14676 1159 MGQIICNLGDYLKSE---LPVCLPILLDRLRNEI------TRLTTVKALTKIAAS--PLRIDLRPIL-TDGIPILGSFLR 1226 (1827)
Q Consensus 1159 lg~l~~~~g~~l~~~---l~~lL~~Ll~~L~~e~------tR~~av~al~~ia~~--~~~~dl~p~~-~~~l~~L~~~Lr 1226 (1827)
++.+.....+ .... ....+|.|++.++... .+..|+.+|..++.. .....-..+. ..+++.|..+|+
T Consensus 311 L~nLs~~~~~-nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~ 389 (458)
T 3nmz_A 311 LWNLSAHCTE-NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389 (458)
T ss_dssp HHHHHHHCHH-HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS
T ss_pred HHHHccCCHH-HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc
Confidence 9999874322 1222 2458899998887432 466777777777641 1111111111 346888999999
Q ss_pred chhHHHHHHHHHHHHHHHHhCCCCcChH-hHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1227 KNQRALKLSTLLLLDTLLVNYPSAISTE-MLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1227 k~~r~lR~~al~aL~~L~~~~~~~l~~~-~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
..+..++..++.+|..+....... ... .-.+.++.|..++...+..++..+..+|..++...|.
T Consensus 390 ~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHSSCHHH-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred CCChHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 888889999999999987421110 011 1235788899999999999999999999999987664
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.21 E-value=9.5e-05 Score=92.48 Aligned_cols=294 Identities=12% Similarity=0.128 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhh-----------hhhhhHHHHHHhhhhh----h-----hH-------HHHHHHHH
Q psy14676 1147 IDQEVKERAISCMGQIICNLGDYLKS-----------ELPVCLPILLDRLRNE----I-----TR-------LTTVKALT 1199 (1827)
Q Consensus 1147 ~d~eVre~Ai~alg~l~~~~g~~l~~-----------~l~~lL~~Ll~~L~~e----~-----tR-------~~av~al~ 1199 (1827)
.+++++..|..|+..|+....+.... .++...+.+++-+... + .| ..|+.+|+
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHH
Confidence 35799999999999999876443221 1122223333333322 1 12 38999999
Q ss_pred HHhcCCCccccchhh--hhhHhhhhhhhcc-----------hhHHHHHHHHHHHHHHHHhCCCCcChHh---HHHHHHHh
Q psy14676 1200 KIAASPLRIDLRPIL--TDGIPILGSFLRK-----------NQRALKLSTLLLLDTLLVNYPSAISTEM---LNKVTVEL 1263 (1827)
Q Consensus 1200 ~ia~~~~~~dl~p~~--~~~l~~L~~~Lrk-----------~~r~lR~~al~aL~~L~~~~~~~l~~~~---~~~ll~~L 1263 (1827)
.++... +.+..+ ..+++.|..++.. .+..++..+..+|..|...... .... ..+.+|.|
T Consensus 174 nls~~~---e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~--~k~~i~~~~GaIp~L 248 (458)
T 3nmz_A 174 KLSFDE---EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA--NKATLCSMKGCMRAL 248 (458)
T ss_dssp HHTTSH---HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHCHHHHHHH
T ss_pred HhcCCH---HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc--cHHHHHHcCCcHHHH
Confidence 986532 112222 2467778888742 3466889999999998764211 1112 24678999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHh-cCCCCHhHHHHHHHHHhh
Q psy14676 1264 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNA-FTPTSEEVKSAASYTLGS 1342 (1827)
Q Consensus 1264 ~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~-~~~~s~eVr~aAa~aLG~ 1342 (1827)
..++...|..++..+..+|..++..... .....+.+ ...++.+++. +.+.+++++..|+.+|++
T Consensus 249 V~LL~s~~~~v~~~A~~aL~nLs~~~~~-----~~k~~I~~----------~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 249 VAQLKSESEDLQQVIASVLRNLSWRADV-----NSKKTLRE----------VGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTSSCCH-----HHHHHHHH----------TTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcCCCH-----HHHHHHHH----------cCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999887642100 00000001 1345666665 456788999999999999
Q ss_pred hhhh---h------hhhhHHHHHHhhhcCc-----hhhHHHHHHHHHHHhhccccccchhhhhch-H-HHHHHHHhhhhc
Q psy14676 1343 IAVG---N------LQQYVPFVLKEIENQP-----KRQYLLLHSLKEIISWQSTSTSGVAQLQQF-V-PAIWAQLFLHCE 1406 (1827)
Q Consensus 1343 i~~~---~------l~~~LP~Il~~i~~~~-----~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~-~-~~i~~~L~~~~~ 1406 (1827)
++.. + ....+|.+++.+.... +.+....++|.-+-.+.+. ....+.. . ....+.|++.+.
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~----~~~~~~~i~~~G~i~~Lv~LL~ 389 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT----NEDHRQILRENNCLQTLLQHLK 389 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHSS
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHcccHHHHHHHHc
Confidence 7652 2 1246788888886532 1345556666665431111 1221111 1 124566777776
Q ss_pred CCchhHHHHHHHHHHHhhccCCC--------cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q psy14676 1407 CQEEGTRNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTS 1464 (1827)
Q Consensus 1407 ~~~e~vR~~aAecLGkL~~~~p~--------~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~ 1464 (1827)
+.+..++..|+.+|+.|+..+++ ..+|.|.+++++.++.+|..+..||+.+..+.+..
T Consensus 390 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 77778999999999999976543 56899999999999999999999999999876544
No 84
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.15 E-value=0.013 Score=79.93 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=85.2
Q ss_pred HHHhhccCC-CCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC---CCCHHHHHHHH
Q psy14676 64 DLLSRFGAL-LPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT---NKSTSTNRTYI 139 (1827)
Q Consensus 64 ~l~~~~~~~-l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~---~~~~~~r~~ai 139 (1827)
-+..+.+.- ..+.+..++.-++..-.+.=+.||+.|..++.+.....+.. ...+++.+++.|.. +.+.+.-+.++
T Consensus 117 R~~~~~~~r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs-~~~iip~ll~~L~~~~~~~~~~~iKGaL 195 (997)
T 1vsy_5 117 RVLLHSTNRKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGS-YGVVINKIIPSLEKAIKDHDYMKIQVIL 195 (997)
T ss_dssp HHHHSCCCBCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTH-HHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhccccCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 333344443 55577888988988777888999999999999999987654 35567777777744 44556667777
Q ss_pred HHHH--HHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q psy14676 140 QCFA--AICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFV 187 (1827)
Q Consensus 140 ~~l~--~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~ 187 (1827)
.+|. .+......... ++..++|.+++....+.++++..+-.++..++
T Consensus 196 y~L~~k~~~~~~~~d~~-~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~ 244 (997)
T 1vsy_5 196 NVLLIKKIHRKLMTDYK-DIGRLIFLLIECCRVNELEIGMYADKILTDIV 244 (997)
T ss_dssp HHTTSHHHHHHGGGCHH-HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHH
T ss_pred HHHhhhhhhhHHhcChH-HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Confidence 7766 56555554433 67788899998887778887766554444443
No 85
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.14 E-value=1.3e-05 Score=89.67 Aligned_cols=180 Identities=17% Similarity=0.140 Sum_probs=130.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
+++.++|..++.+|..+...-+. ....-+....+|.|++.+.++ ++.++..|+.+|+.++......... .....+
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNE---QIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHH---HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHH---HHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 55678999999999988744322 112223346789999999765 8999999999999997533221111 112367
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh-
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH- 156 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~- 156 (1827)
+.++..|+++++.||+.|+.+|++++...++. .+ ...++.++..|.. ++..+++.++.+|+.++...+......
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 177 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVK 177 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 88999999999999999999999999754332 11 2356777777765 468899999999999997644332221
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFV 187 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~ 187 (1827)
-...+|.+.+.++++++++|+.|..++..+.
T Consensus 178 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2368899999999899999999999887764
No 86
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.99 E-value=0.00015 Score=85.53 Aligned_cols=178 Identities=10% Similarity=0.129 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCCCchhHHHHHHHhh-hcCCCCHHHHHHHHHHHHHHHHhhch---hHHH-HHHHHHHH
Q psy14676 52 VSVQLEALDILSDLLSRFG--ALLPSFHFVILTALLP-QLSSPRQAVRKRTIVALSHLVMSCNL---QLYT-KLIDFLLE 124 (1827)
Q Consensus 52 ~~v~~~al~iL~~l~~~~~--~~l~~~~~~il~~ll~-~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~-~l~~~ll~ 124 (1827)
..-|..|++.|.++++... ..+ ...-.++.+++ .|.++++.||..|+.+|+.++..-+. ..+. ..++.|+.
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~--~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADF--CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHH--HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHH--HHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 4578899999999988542 211 11134677888 99999999999999999999975332 1221 35677887
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch--HHH
Q psy14676 125 GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI--QSI 201 (1827)
Q Consensus 125 ~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l--~~i 201 (1827)
.|.++.+..+|+.++.+|+.+++..+....... ...+|.+...++..+..+|..|..++..++..-++ ...++ ..+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCC
Confidence 776555688999999999999986554332222 36888999888888999999999999888876333 22222 246
Q ss_pred HHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcC
Q psy14676 202 TELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR 276 (1827)
Q Consensus 202 i~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~ 276 (1827)
++.+...+... +.+||..|+.+|+.++...+
T Consensus 211 i~~Lv~LL~~~--------------------------------------------d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 211 VQQLVALVRTE--------------------------------------------HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHTSC--------------------------------------------CSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC--------------------------------------------ChhHHHHHHHHHHHHHhCCh
Confidence 67777766431 01589999999999987633
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.95 E-value=8.1e-05 Score=87.44 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=136.9
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHH
Q psy14676 1036 LPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKV 1115 (1827)
Q Consensus 1036 lP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~ 1115 (1827)
+| +.+.+.+.+|+.|.+++.-+..+....+....+ ....+.+..+.+.+...+.|.+..|...++.++..++..
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~ 85 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISR-----DDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDA 85 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC---------------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccc-----hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 55 678899999999999999888444432211100 011122556778888899999999999999999999875
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHH
Q psy14676 1116 IRPLTSPSSYDFAPFTSDIYQCTLVR-LKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTT 1194 (1827)
Q Consensus 1116 l~~~~~~~~~~~~~~l~~l~~~ll~~-L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~a 1194 (1827)
+.+.. .....+..++..+++.++.+ +. |....+|+.|+.++-.++...+.
T Consensus 86 ~~~~~-~~~~~~~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~~~-------------------------- 136 (278)
T 4ffb_C 86 FASSS-LKNAHNITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLDTS-------------------------- 136 (278)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTSSS--------------------------
T ss_pred hhhhh-cccchhHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhcCc--------------------------
Confidence 44210 00111334567777777776 44 67788888888888776653321
Q ss_pred HHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCC-cCh-HhHHHHHHHhhhhcCCCCh
Q psy14676 1195 VKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA-IST-EMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1195 v~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~-l~~-~~~~~ll~~L~~ll~d~D~ 1272 (1827)
...+++.+...+...++.+|..++..|..++..+|.. +++ ..+..+++.+..++.|.|.
T Consensus 137 -------------------~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~ 197 (278)
T 4ffb_C 137 -------------------ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDR 197 (278)
T ss_dssp -------------------SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSH
T ss_pred -------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcH
Confidence 0112333444455556788999999999999988765 443 3567788888999999999
Q ss_pred hHHHHHHHHHHHHHHhC
Q psy14676 1273 HIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1273 ~l~~~al~~L~~l~~~~ 1289 (1827)
.||..+..++..+....
T Consensus 198 ~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 198 NVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998887643
No 88
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.89 E-value=0.00012 Score=86.33 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH-hhhhhh--hHHHHHHHHHHHhcCCCccccch-hh-hhhHhhhh
Q psy14676 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLD-RLRNEI--TRLTTVKALTKIAASPLRIDLRP-IL-TDGIPILG 1222 (1827)
Q Consensus 1148 d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~-~L~~e~--tR~~av~al~~ia~~~~~~dl~p-~~-~~~l~~L~ 1222 (1827)
+.+-|..|+..|..++......-.=.-...+|.|+. .|++.. .|..|+.++|.++..... ... ++ ..+++.|.
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~--~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA--IQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH--HHHHHHHCCCHHHHH
Confidence 346688888888888865421100011235677888 666543 499999999999964211 111 12 35788899
Q ss_pred hhhcch-hHHHHHHHHHHHHHHHHhCCCCcChHhH-HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHh
Q psy14676 1223 SFLRKN-QRALKLSTLLLLDTLLVNYPSAISTEML-NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAAS 1300 (1827)
Q Consensus 1223 ~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~-~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~ 1300 (1827)
.+|+.. +..+|..++.||..++.+.+.... ... ...++.|..++.+.|..++.-++.+|+.++...+....
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~-~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~------ 203 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLL-QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG------ 203 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH------
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHH-HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH------
Confidence 999853 678999999999999875432111 111 24677888888999999999999999999886442110
Q ss_pred hhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh
Q psy14676 1301 ILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG 1346 (1827)
Q Consensus 1301 ~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~ 1346 (1827)
.+ ....+++.+...+.+++.+|+..|+.+||++..+
T Consensus 204 ---~v-------v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 204 ---TL-------CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp ---HH-------HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred ---HH-------HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 00 0134778888889999999999999999998765
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00038 Score=79.74 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=133.1
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
.+-+.+...+-+.+++.|..++..|.......+. .+...++-+++-+.-.+.|.++.|...++..+..++
T Consensus 46 ~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~----------~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~ 115 (266)
T 2of3_A 46 QAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPR----------SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIV 115 (266)
T ss_dssp TBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH----------HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH----------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3456667777788899999999988844333222 223336666676665677999999999999999999
Q ss_pred HHhccCCCCCCCCcchh-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHH
Q psy14676 1114 KVIRPLTSPSSYDFAPF-TSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRL 1192 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~-l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~ 1192 (1827)
..+.. .+..+..| ...++|.++.++. |....||+.+...+..+....+. ..+++.++
T Consensus 116 ~~l~~----~~y~~~~~ea~~~lP~LveKlG--d~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~---------- 173 (266)
T 2of3_A 116 ELIRD----TETPMSQEEVSAFVPYLLLKTG--EAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLL---------- 173 (266)
T ss_dssp HHHHH----TTCCCCHHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHH----------
T ss_pred HHHHh----ccccchHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHCCH------HHHHHHHH----------
Confidence 88763 12345555 5788999999998 88899999999988776654322 11222222
Q ss_pred HHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHH---HHhhhhcCC
Q psy14676 1193 TTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVT---VELAPLVSE 1269 (1827)
Q Consensus 1193 ~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll---~~L~~ll~d 1269 (1827)
..++..++..|..++..+..++..+|.. +. ..+ +.+..+++|
T Consensus 174 ------------------------------~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~---~~l~~~~~ia~ll~D 218 (266)
T 2of3_A 174 ------------------------------DALKSKNARQRSECLLVIEYYITNAGIS--PL---KSLSVEKTVAPFVGD 218 (266)
T ss_dssp ------------------------------HGGGCSCHHHHHHHHHHHHHHHHHHCSG--GG---GGGCHHHHHGGGGGC
T ss_pred ------------------------------HHHccCCHHHHHHHHHHHHHHHHhcCCC--cc---ccccchHHHHHHHcC
Confidence 2223334677888888888888877765 21 235 778889999
Q ss_pred CChhHHHHHHHHHHHHHHhC
Q psy14676 1270 SDLHIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1270 ~D~~l~~~al~~L~~l~~~~ 1289 (1827)
.|..||..|+.++..+....
T Consensus 219 ~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 219 KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999998888777643
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.79 E-value=0.00033 Score=84.87 Aligned_cols=228 Identities=12% Similarity=0.130 Sum_probs=147.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchh
Q psy14676 1134 IYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPI 1213 (1827)
Q Consensus 1134 l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~ 1213 (1827)
+++.++..|- |...|+|--|..++.+++...|...+.. ++. |. -.|+|.+-.++-
T Consensus 175 fcE~L~~DLF--dp~WEiRHGAALGLREILR~hG~GAGR~---------~~~-N~---DLAvRLLCVLAL---------- 229 (800)
T 3oc3_A 175 FFEQISDNLL--SYEWYKRHGAFLAFAAMFSEIDNGGDIQ---------IRV-DS---KLFSKIYEILVT---------- 229 (800)
T ss_dssp TTHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCC----CC---------CCC-CT---THHHHHHHHHHH----------
T ss_pred HHHHHHHHhc--CcchhhhhHHHHHHHHHHHHhccCCcee---------ccc-cH---HHHHHHHHHHHh----------
Confidence 6667777776 8899999999999999999887522211 111 11 233333333331
Q ss_pred hhhhHhhhhhhhcch-hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCc
Q psy14676 1214 LTDGIPILGSFLRKN-QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNA 1292 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~ 1292 (1827)
..++.|..+. -..+|.++..+|+.+ ...+... .++..|...+....++++..++..|..+ .
T Consensus 230 -----DRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~------~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~----- 291 (800)
T 3oc3_A 230 -----DKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPN------DIIEQLVGFLDSGDWQVQFSGLIALGYL-K----- 291 (800)
T ss_dssp -----BCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSC------CHHHHHTTGGGCSCHHHHHHHHHHHHHT-G-----
T ss_pred -----ccccccccCeeeeehHHHHHHHHHHH-HhCChhH------HHHHHHHhhcCCCCeeehhhhHHHHHHH-H-----
Confidence 1122222222 146889999999998 6655542 3455555667888999999999888776 1
Q ss_pred cchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHH
Q psy14676 1293 LVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHS 1372 (1827)
Q Consensus 1293 ~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~a 1372 (1827)
++-. ..+.+.+.++.+|.|.++|||..||.+|-.++ .+..++.+++.+ +.+
T Consensus 292 -----------DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iL----------Wd~ 342 (800)
T 3oc3_A 292 -----------EFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKC----------WKN 342 (800)
T ss_dssp -----------GGCC-----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHH----------HHH
T ss_pred -----------HHHH-----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHH----------HHH
Confidence 1100 14789999999999999999999999998877 233455554432 222
Q ss_pred HHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHH
Q psy14676 1373 LKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLT 1452 (1827)
Q Consensus 1373 L~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~ 1452 (1827)
|.+. ++|.+....+++.|.+.|..+. -+..+| .++|+|-.++.+.-+.+|.+++.
T Consensus 343 L~~L-----------DDLSASTgSVMdLLAkL~s~p~-------------~a~~dp-~LVPRL~PFLRHtITSVR~AVL~ 397 (800)
T 3oc3_A 343 IESE-----------ELISVSKTSNLSLLTKIYRENP-------------ELSIPP-ERLKDIFPCFTSPVPEVRTSILN 397 (800)
T ss_dssp HHTC-----------CSCCTTHHHHHHHHHHHHHHCT-------------TCCCCS-GGGGGTGGGGTCSSHHHHHHHHH
T ss_pred hhhh-----------cccchhhHHHHHHHHHHHcCCc-------------ccccCh-HHHHHHHhhhcCCcHHHHHHHHH
Confidence 3222 2233444555565555543331 122344 88999999999999999999999
Q ss_pred HHHHHh
Q psy14676 1453 AVKFTI 1458 (1827)
Q Consensus 1453 Alk~~~ 1458 (1827)
++..++
T Consensus 398 TL~tfL 403 (800)
T 3oc3_A 398 MVKNLS 403 (800)
T ss_dssp HTTTCC
T ss_pred HHHHHH
Confidence 988776
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.77 E-value=0.00069 Score=81.29 Aligned_cols=305 Identities=13% Similarity=0.139 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhh-hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGD-MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~-~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
.|.|.+..|.|..+.. |+.|.. -...+.+.+++.+...+-..|.-+...+..+.+..
T Consensus 42 ~kc~~~l~kll~l~~~--G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-------------------- 99 (355)
T 3tjz_B 42 RKCAHILTKILYLINQ--GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-------------------- 99 (355)
T ss_dssp HHHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS--------------------
T ss_pred HHHHHHHHHHHHHHHC--CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH--------------------
Confidence 4666677777766554 333322 34567788889999999999999888887665320
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCc
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTE 416 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e 416 (1827)
+..+ -++..+.+-+.++++-+|-.+++.++.+.. ...++.+.+.+.+++.|
T Consensus 100 ----~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~------~~m~~~l~~~lk~~L~d------------------ 150 (355)
T 3tjz_B 100 ----EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD------STMLQAIERYMKQAIVD------------------ 150 (355)
T ss_dssp ----SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC------TTTHHHHHHHHHHHHTC------------------
T ss_pred ----HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC------HHHHHHHHHHHHHHcCC------------------
Confidence 0112 456778888999999999999977766642 34567888999999854
Q ss_pred ccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhc
Q psy14676 417 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGT 496 (1827)
Q Consensus 417 ~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~ 496 (1827)
.+.-||.+|+-|...++...++.... .++.+...+.|+.+-|-..|+..+.++.+.-
T Consensus 151 -------------------~~pyVRk~A~l~~~kL~~~~pe~v~~----~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 151 -------------------KVPSVSSSALVSSLHLLKCSFDVVKR----WVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -------------------SSHHHHHHHHHHHHHHTTTCHHHHHT----THHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred -------------------CCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 34559999999999888777765544 3445566778888888887887777765321
Q ss_pred ccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhh-hHHhHHHHHHHhhcCCCccccccchHHHHHHHhh
Q psy14676 497 RTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIR-TRQDCLALLRELMTSSDKDFRFMATNDLMSELQK 575 (1827)
Q Consensus 497 g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~-~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~ 575 (1827)
+ . .+..+...+.....+ .+..|. ++..+.
T Consensus 208 ~------------------------~----a~~kLv~~l~~~~l~~~~~q~~---------------------llr~l~- 237 (355)
T 3tjz_B 208 R------------------------L----AVSKMISKFTRHGLKSPFAYCM---------------------MIRVAS- 237 (355)
T ss_dssp H------------------------H----HHHHHHHHHHSSCCSCHHHHHH---------------------HHHHHT-
T ss_pred h------------------------H----HHHHHHHHHhcCCCcChHHHHH---------------------HHHHHH-
Confidence 1 1 122222222211000 011000 011100
Q ss_pred hccccc-hhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhh
Q psy14676 576 DSIKLD-DDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKL 654 (1827)
Q Consensus 576 ~~~~~d-~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~ 654 (1827)
.....| +.....+.+.+..+++..+.-|.+.|++++-.+-. .+ ...+..++..|..++.+.+..+|.
T Consensus 238 ~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~-----------~~~~~~a~~~L~~fLss~d~niry 305 (355)
T 3tjz_B 238 RQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CS-----------AKELAPAVSVLQLFCSSPKAALRY 305 (355)
T ss_dssp CC-----------------CCCCCSSHHHHHHHHHHHTC-----------------------CCCTHHHHHHSSSSSSHH
T ss_pred HhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CC-----------HHHHHHHHHHHHHHHcCCCchHHH
Confidence 111122 23446778888888998999999999998876532 11 123445578889999999999999
Q ss_pred hhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHh
Q psy14676 655 STLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLT 703 (1827)
Q Consensus 655 ~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~ 703 (1827)
.+|..++.+...++ .+++....++..+++|+++.|+.+|++.+-
T Consensus 306 vaLr~L~~l~~~~P-----~~v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 306 AAVRTLNKVAMKHP-----SAVTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp HHHHCC-------------------------------------------
T ss_pred HHHHHHHHHHHHCc-----HHHHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 99999999977666 455567778899999999999999977553
No 92
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.73 E-value=0.00027 Score=85.59 Aligned_cols=233 Identities=11% Similarity=0.046 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHhhccCCCCch--hHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy14676 38 ITGKLSTAIEKQ----------EDVSVQLEALDILSDLLSRFGALLPSF--HFVILTALLPQLSSPRQAVRKRTIVALSH 105 (1827)
Q Consensus 38 L~P~Ll~~l~~~----------~~~~v~~~al~iL~~l~~~~~~~l~~~--~~~il~~ll~~L~~~~~~VRk~Ai~aL~~ 105 (1827)
.+|.|+..+..+ .++.++..|..+|..++..-.+.-... ....++.|+..|.++++.||..|+.||.+
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 153 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456666666311 246789999999999874322110001 23468899999999999999999999999
Q ss_pred HHHhhch---hHHH--HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh--HHHHHHHHHhhcccCch----H
Q psy14676 106 LVMSCNL---QLYT--KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH--IERVMPLILKYSREEDD----E 174 (1827)
Q Consensus 106 l~~~~~~---~~~~--~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~--l~~i~p~l~~~~~~~~d----e 174 (1827)
++..-++ ..+. ..++.|++.|.+..+..+++.++.++..++....+.-... ....+|.+.+.+...++ +
T Consensus 154 Ls~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~ 233 (354)
T 3nmw_A 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233 (354)
T ss_dssp HHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCH
T ss_pred HhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHH
Confidence 9874221 1221 2467777776444567889999999999987332211111 24688888888875544 5
Q ss_pred HHHHHHHHHHHHHHh---CCCccccch--HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCC
Q psy14676 175 LREFCLQACEAFVQR---CPKEITPHI--QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNE 249 (1827)
Q Consensus 175 lRe~al~ale~~~~~---~p~e~~p~l--~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e 249 (1827)
+++.|..++..+... .++ .+..+ ...+|.+++.+...
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~g~i~~Lv~lL~~~------------------------------------- 275 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKSH------------------------------------- 275 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-HHHHHHTTTHHHHHHHHTTCS-------------------------------------
T ss_pred HHHHHHHHHHHHHhhccCCHH-HHHHHHHcCCHHHHHHHHcCC-------------------------------------
Confidence 888888888777752 332 11111 13577777766320
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q psy14676 250 YSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 250 ~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~ 315 (1827)
+.++++.|+.+|..++...++....+. .-++|.|+..++..++.+|..|..++..++..
T Consensus 276 -------~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 276 -------SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp -------CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred -------ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 125889999999998743333222222 24689999999999999999999999999854
No 93
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.66 E-value=0.017 Score=78.55 Aligned_cols=373 Identities=13% Similarity=0.115 Sum_probs=200.2
Q ss_pred hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCC---cChHhHHHHHHHhhhhcC----CCChhHHHHHHHHHHHHH
Q psy14676 1214 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA---ISTEMLNKVTVELAPLVS----ESDLHIAQLTLTLLTSIA 1286 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~---l~~~~~~~ll~~L~~ll~----d~D~~l~~~al~~L~~l~ 1286 (1827)
++.+.+.+-.+..++++.-..++++.+..++.....- .-...-+.+.|-|...+. .+....+..++..+..-
T Consensus 506 l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~- 584 (997)
T 1vsy_5 506 MSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAV- 584 (997)
T ss_dssp GGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcC-
Confidence 4555666666777788888889999999987743221 112233445555555554 23333333332222210
Q ss_pred HhCCC----------------------ccch----hhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHH
Q psy14676 1287 KIQPN----------------------ALVE----PAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTL 1340 (1827)
Q Consensus 1287 ~~~~~----------------------~~~~----~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aL 1340 (1827)
..|. .... .-+-.++.++|-+... ...++..++ +.++.+.||++.+..|
T Consensus 585 -~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~--~~~~l~~~~--l~h~y~~VRe~Ig~~L 659 (997)
T 1vsy_5 585 -VDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD--VGKLFDELV--FDHPYDQVRQAVAKLL 659 (997)
T ss_dssp -SCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC--CHHHHHHCC--SCCSCHHHHHHHHHHH
T ss_pred -CChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc--HHHHHHHHH--hCCChHHHHHHHHHHH
Confidence 0110 0000 0022234455555432 345666666 7889999999998887
Q ss_pred hhhhhhh--------------------------------hhhhHHHHHHhhhc--------Cc----hhhHH-HHHHHHH
Q psy14676 1341 GSIAVGN--------------------------------LQQYVPFVLKEIEN--------QP----KRQYL-LLHSLKE 1375 (1827)
Q Consensus 1341 G~i~~~~--------------------------------l~~~LP~Il~~i~~--------~~----~~q~~-~l~aL~E 1375 (1827)
..+.... +...++.+++.++. .+ +.+|. ....+-.
T Consensus 660 ~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~ 739 (997)
T 1vsy_5 660 TTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFY 739 (997)
T ss_dssp HHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHH
Confidence 6532211 11123333333331 01 12221 1122222
Q ss_pred HHhhccccccchhhhhchHHH-HHHHHhhhhcCCch-hHHHH-HHHHHHHhhccC-CCcchHHHHHhh----h-cCCHHH
Q psy14676 1376 IISWQSTSTSGVAQLQQFVPA-IWAQLFLHCECQEE-GTRNV-VAECLGKLTLID-PSNLLPRLQESL----K-SNSALM 1446 (1827)
Q Consensus 1376 ii~~~~~s~~g~~~L~~~~~~-i~~~L~~~~~~~~e-~vR~~-aAecLGkL~~~~-p~~~lP~L~~~l----~-~~~~~~ 1446 (1827)
.+.....+ -....+-||++. ++|.++...+..++ +.... +..|+..|+.+- +...++.+.+.+ + +++. .
T Consensus 740 wl~~~l~~-~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~ 817 (997)
T 1vsy_5 740 WIKEMARG-PNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-Q 817 (997)
T ss_dssp HHHHHSSG-GGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-S
T ss_pred HHHHHhcC-CCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-H
Confidence 22111011 001235566666 66767664433322 33344 456777776433 445556555444 3 4566 8
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCc-hHHHHHHHHHhhhhhhh
Q psy14676 1447 RTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKN-GEVQNLAVKCLGPLVNK 1525 (1827)
Q Consensus 1447 R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~-~~Vr~~a~~~Lg~L~~~ 1525 (1827)
|..++.-++.++-..-- .+++.-...++..++.+|.|+. .+||..|+.+|+-+++.
T Consensus 818 R~~~L~~lq~~~f~n~f-----------------------~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 818 TKLQLAFIQHFLSAELL-----------------------QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp HHHHHHHHHHHHHHHTT-----------------------TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 88888777666542211 1122222467889999999999 99999999999999876
Q ss_pred h-hhhhHHHHHHHHHhhhcc--ccccc--ccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcccCCcccccccc
Q psy14676 1526 V-KEFQVETIVDALCSNMVS--DKEQL--RDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHI 1600 (1827)
Q Consensus 1526 l-~~~~~~~~v~~l~~~l~~--~~~~~--~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~llp~l~~~~~ 1600 (1827)
. .......++..+...... ..... +...+...|++|..+|.+..+..|.-+ . ++..+|.++.
T Consensus 875 ~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~v--------P--~P~w~P~~l~--- 941 (997)
T 1vsy_5 875 WKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVF--------P--LPPWIPKNLS--- 941 (997)
T ss_dssp CCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCS--------S--CCTHHHHHHH---
T ss_pred CCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCC--------C--CCcccHHHHH---
Confidence 6 435555677665544422 00000 000112578999999999999988875 1 1355555541
Q ss_pred cccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhcc
Q psy14676 1601 HILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDR 1650 (1827)
Q Consensus 1601 ~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~ 1650 (1827)
+.. +|.-|-| ++++++=+|+...-.|.-|.
T Consensus 942 ------~La-------------~~~~~~~-~i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 942 ------NLS-------------SWARTSG-MTGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp ------HHH-------------TTSSSCS-SHHHHTHHHHHHHHHHTSTT
T ss_pred ------HHH-------------HHhCCCC-chHHHHHHHHHHHHhccchh
Confidence 111 2444555 48888888888887776553
No 94
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.64 E-value=0.00089 Score=81.11 Aligned_cols=228 Identities=12% Similarity=0.120 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHHHHHHhhch--hHH---HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH--HHHHHHH
Q psy14676 92 RQAVRKRTIVALSHLVMSCNL--QLY---TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI--ERVMPLI 164 (1827)
Q Consensus 92 ~~~VRk~Ai~aL~~l~~~~~~--~~~---~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l--~~i~p~l 164 (1827)
++.+|+.|+.+|.+++..-++ ..+ ...++.|+..|.+ ++..+++.++.+|..++..........+ ...+|.+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 478999999999999864331 122 2357888888865 5688999999999999864222222222 2567888
Q ss_pred Hhh-cccCchHHHHHHHHHHHHHHHhCCCccccc--hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCC
Q psy14676 165 LKY-SREEDDELREFCLQACEAFVQRCPKEITPH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGE 241 (1827)
Q Consensus 165 ~~~-~~~~~delRe~al~ale~~~~~~p~e~~p~--l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~d 241 (1827)
++. .+..++++++.|..++-.+...+++.-... ....+|.+.+.+.+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~---------------------------- 227 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS---------------------------- 227 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC----------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC----------------------------
Confidence 876 455678899988888888876553311111 1357888888775410
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHH---cCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhc
Q psy14676 242 DEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIAT---RRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 317 (1827)
Q Consensus 242 de~e~~~e~sdddD~sWkVRraAak~L~~l~~~---~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~ 317 (1827)
+...+.+++.|+.+|..++.. .++.-..+. ...+|.|+..+++....++..|..++..+....
T Consensus 228 ------------~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~- 294 (354)
T 3nmw_A 228 ------------QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN- 294 (354)
T ss_dssp ------------SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-
T ss_pred ------------CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-
Confidence 001136888899999988862 222212222 246899999999999999999999999886211
Q ss_pred ccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc
Q psy14676 318 TFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG 379 (1827)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~ 379 (1827)
......+.. .-.+|.+.+.|+.+++++|..+...|..|...-|.
T Consensus 295 ----------------~~~~~~i~~--~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 295 ----------------PKDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp ----------------HHHHHHHHH--TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred ----------------HHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 011222221 13467788888899999999888888888876554
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.55 E-value=0.0036 Score=68.56 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=130.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccch
Q psy14676 1136 QCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLK-SELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRP 1212 (1827)
Q Consensus 1136 ~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~-~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p 1212 (1827)
..++.-+. |.|..++.+|+.+++.+++...+.+. ..+..++|.+++.++.++- -..|+|+++.+... +++++
T Consensus 36 ~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~---vpL~~ 110 (265)
T 3b2a_A 36 FLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD---VPMGS 110 (265)
T ss_dssp HHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT---CCBCH
T ss_pred HHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC---CCCCH
Confidence 33444444 88999999999999999999866665 4788899999988875554 57788888888763 22331
Q ss_pred -hhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1213 -ILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1213 -~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
-...++..+.+.+.+.+.-++.-+++.++.+ + .... ...++..+..++...|+++..+++.+|..++....+
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--k-v~~~----~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--Q-PLED----SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--C-BSCC----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--C-cccc----hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 2345667777777777788888999999887 2 1112 345777778888888999999999888877654322
Q ss_pred ccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh
Q psy14676 1292 ALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV 1345 (1827)
Q Consensus 1292 ~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~ 1345 (1827)
..-...++.-+-..++++++.++.-|-.+|-++..
T Consensus 184 -------------------~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 184 -------------------SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp -------------------CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred -------------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 12234566667777888899999999888887654
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.53 E-value=0.00078 Score=73.70 Aligned_cols=182 Identities=14% Similarity=0.202 Sum_probs=138.4
Q ss_pred hhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1086 Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
.+..+...+.|+++.++..|+.+++++.+.... .--...++.+++.++.-+. +.|..|.-.|+.|++.++..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~------~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADS------DLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccc------cccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcC
Confidence 556677778999999999999999999986310 0012467888888888776 77889999999999999975
Q ss_pred hhhhhh-hhhhhhHHHHHHhhh--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHH
Q psy14676 1166 LGDYLK-SELPVCLPILLDRLR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDT 1242 (1827)
Q Consensus 1166 ~g~~l~-~~l~~lL~~Ll~~L~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~ 1242 (1827)
. -+. ..+..+..+|.+.++ |+.-+..|+..+|.+ .. .. ....++..+.+++...++.++.+++.+|-.
T Consensus 106 v--pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv--~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 106 V--PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QP--LE---DSKLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp C--CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CB--SC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--Cc--cc---chHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 4 223 356667777777775 344599999999988 21 11 235667777888876789999999999998
Q ss_pred HHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH
Q psy14676 1243 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK 1287 (1827)
Q Consensus 1243 L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~ 1287 (1827)
+....+. ++.++.++.++..+++..|..++..++..+-.+..
T Consensus 177 ia~~S~D---~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 177 MLNSSAD---SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HGGGCSS---CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hhcccCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 8775442 33456788889999999999999999988877654
No 97
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.46 E-value=0.0031 Score=75.60 Aligned_cols=271 Identities=11% Similarity=0.105 Sum_probs=126.8
Q ss_pred CCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCC
Q psy14676 1248 PSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTP 1327 (1827)
Q Consensus 1248 ~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~ 1327 (1827)
|..+++.....++..+..++...|..++......+..++.. ++. .+ -+...+.+-+++
T Consensus 58 G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e--------------------~i-Lv~Nsl~kDl~~ 115 (355)
T 3tjz_B 58 GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED--------------------VI-IVTSSLTKDMTG 115 (355)
T ss_dssp TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC--------------------GG-GGHHHHHHHHHS
T ss_pred CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH--------------------HH-HHHHHHHhhcCC
Confidence 55566655667888888999999999999988777665553 211 01 245667777888
Q ss_pred CCHhHHHHHHHHHhhhhhhhhh-hhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhh
Q psy14676 1328 TSEEVKSAASYTLGSIAVGNLQ-QYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHC 1405 (1827)
Q Consensus 1328 ~s~eVr~aAa~aLG~i~~~~l~-~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~ 1405 (1827)
+++-+|..|.-+||.+..+.+- .+.+.+.+.+.+. +-.+...+.+..-++.. . ++..+.|++.+...+
T Consensus 116 ~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~---~---pe~v~~~~~~l~~ll---- 185 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC---S---FDVVKRWVNEAQEAA---- 185 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT---C---HHHHHTTHHHHHHHT----
T ss_pred CcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc---C---HHHHHHHHHHHHHHh----
Confidence 9999999999999998776543 3555666666552 22333333343333331 1 334444554443333
Q ss_pred cCCchhHHHHHHHHHHHhhccCC--CcchHHHHHhhhcC---CHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhh
Q psy14676 1406 ECQEEGTRNVVAECLGKLTLIDP--SNLLPRLQESLKSN---SALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSE 1480 (1827)
Q Consensus 1406 ~~~~e~vR~~aAecLGkL~~~~p--~~~lP~L~~~l~~~---~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~ 1480 (1827)
.+.+.. +.+-+++-|..+.. ..-+.+|...+... ++..-. .-+|++..-.++ |
T Consensus 186 ~d~n~~---V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~---~llr~l~~~~~~--d-------------- 243 (355)
T 3tjz_B 186 SSDNIM---VQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYC---MMIRVASRQLED--E-------------- 243 (355)
T ss_dssp TCSSHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHH---HHHHHHTCC--------------------
T ss_pred cCCCcc---HHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHH---HHHHHHHHhccc--c--------------
Confidence 222222 23344444443321 11223333333221 232222 222322211110 0
Q ss_pred hhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHH
Q psy14676 1481 LQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTV 1560 (1827)
Q Consensus 1481 l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~ 1560 (1827)
.+.....+++.+...++...+.|...|++++-.+.. .+.......+..+-.-+.+ ++.++|++
T Consensus 244 --------~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss--------~d~niryv 306 (355)
T 3tjz_B 244 --------DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSS--------PKAALRYA 306 (355)
T ss_dssp ---------------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHHHHS--------SSSSSHHH
T ss_pred --------chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcC--------CCchHHHH
Confidence 011224566788888999999999999999988754 2222222333333333332 33499999
Q ss_pred HHHHHhhhhccCCCCcccchhhhhhhhcccCCccccc
Q psy14676 1561 ISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFH 1597 (1827)
Q Consensus 1561 Al~~l~s~a~~~p~li~~~~~~~~~~~l~~llp~l~~ 1597 (1827)
|+..|+..+..+|..+ ..+-..+...|-+
T Consensus 307 aLr~L~~l~~~~P~~v--------~~~n~~ie~li~d 335 (355)
T 3tjz_B 307 AVRTLNKVAMKHPSAV--------TACNLDLENLVTD 335 (355)
T ss_dssp HHHCC--------------------------------
T ss_pred HHHHHHHHHHHCcHHH--------HHHHHHHHHHccC
Confidence 9999999999999999 6677777776664
No 98
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.38 E-value=3.4e-05 Score=79.55 Aligned_cols=119 Identities=9% Similarity=0.017 Sum_probs=79.3
Q ss_pred hhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhc
Q psy14676 1314 VADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ 1392 (1827)
Q Consensus 1314 ~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~ 1392 (1827)
.+.-.+.+...+.++++++|..|+.+||.++... +|.+++.+++ ++..|+...++|+.+- .
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~---------~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQ---------D----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGC---------S-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH----HHHHHHHHcCCCHHHHHHHHHHHHhcC---------C-----
Confidence 3556778888999999999999999999887543 4777777766 3445666666665431 1
Q ss_pred hHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHH
Q psy14676 1393 FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVK 1455 (1827)
Q Consensus 1393 ~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk 1455 (1827)
+...+.|.+.+.+++..+|..++.+||++. ....+|.|.+.++++++.+|..+..||.
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 122344444445667789999999999986 3456799999999999999999888875
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.34 E-value=8.4e-05 Score=76.55 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=82.5
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhh
Q psy14676 1398 WAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDL 1477 (1827)
Q Consensus 1398 ~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l 1477 (1827)
++.+...+.+++..+|..++.+||++.. + . +|.|.+.++++++.+|..++.++..+-.
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~-~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------------ 71 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGD--E-A-FEPLLESLSNEDWRIRGAAAWIIGNFQD------------------ 71 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSS--T-T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCc--h-H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC------------------
Confidence 4555666667777899999999998753 2 2 5999999999999999998888766531
Q ss_pred hhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccch
Q psy14676 1478 MSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGL 1557 (1827)
Q Consensus 1478 ~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~v 1557 (1827)
...++.+..+++|+++.||..|+.+||.+.. ...+..|...+. + +|..|
T Consensus 72 ----------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~-d-------~~~~v 120 (131)
T 1te4_A 72 ----------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAE-T-------GTGFA 120 (131)
T ss_dssp ----------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTT-S-------CCTHH
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHh-C-------CCHHH
Confidence 1245888889999999999999999999863 223334444333 2 23389
Q ss_pred hHHHHHHHhh
Q psy14676 1558 KTVISVVYCL 1567 (1827)
Q Consensus 1558 Rr~Al~~l~s 1567 (1827)
|+.|..+|..
T Consensus 121 r~~A~~aL~~ 130 (131)
T 1te4_A 121 RKVAVNYLET 130 (131)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.11 E-value=0.0038 Score=69.25 Aligned_cols=181 Identities=14% Similarity=0.080 Sum_probs=121.0
Q ss_pred hhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy14676 1343 IAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLG 1421 (1827)
Q Consensus 1343 i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLG 1421 (1827)
+|.+.+..|+-.+++.+.. +=+++|++.... ..-++. -.+.+.+.....+.++...+|-.|++.||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~-------~~~gf~~~~~~a------~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg 96 (240)
T 3l9t_A 30 MGRGSMKQYVARLEKDFSL-------IEHGFKEEEQRA------LTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFG 96 (240)
T ss_dssp ----CHHHHHHHHHHHHTC------------CHHHHHH------HHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHH-------hhcccHHHHHHH------HHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 6778888888777776543 113444443310 111111 13444455555555777889999999999
Q ss_pred HhhccCCCcchHHHHH-hhhcCCHHHHHHHHHHHHHHhh-hcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHH
Q psy14676 1422 KLTLIDPSNLLPRLQE-SLKSNSALMRTTVLTAVKFTIS-DQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKM 1499 (1827)
Q Consensus 1422 kL~~~~p~~~lP~L~~-~l~~~~~~~R~t~l~Alk~~~~-~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ 1499 (1827)
++ . .-...+|.+.. +..+++..+|..+..++...+. ..++ ..++.
T Consensus 97 ~~-~-~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------------------------------~~l~~ 143 (240)
T 3l9t_A 97 YL-S-KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------------------------------KALPI 143 (240)
T ss_dssp HT-T-TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------------------------------TTHHH
T ss_pred hc-c-CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------------------------------HHHHH
Confidence 99 3 33578888887 6668899999999999998885 3221 13377
Q ss_pred HHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCc
Q psy14676 1500 LLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNM 1576 (1827)
Q Consensus 1500 ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li 1576 (1827)
+..-.+|+++.||..|+..+-.-++......-...+-+++..+.+|.+. -||+.--.+||-.++..|+.|
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~-------yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSE-------YVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCH-------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHH-------HHHHHHHHHHHHHhhhCHHHH
Confidence 7888999999999999999865444322233445556666666666554 899999999999999999999
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.93 E-value=0.15 Score=67.32 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch--hHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF--HFVI 80 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~--~~~i 80 (1827)
|.....|..++.||..++. -|. ....-+.+.+++.++..+-.+++..||.+|..+|..++...|+.+..+ ...+
T Consensus 45 S~~~~~r~~A~~al~~l~~-~~~---~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i 120 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQ-DAK---CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV 120 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTT-SHH---HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHc-CcH---HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence 4455689999999999884 221 222334455666666543345689999999999999998877654332 1234
Q ss_pred HHHHhhhcCC--------------CC-------HHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHHhccC--CCCH
Q psy14676 81 LTALLPQLSS--------------PR-------QAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLEGLTT--NKST 132 (1827)
Q Consensus 81 l~~ll~~L~~--------------~~-------~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~~L~~--~~~~ 132 (1827)
++.+...|.. .. ..+-..++.+|..+++...+ .+. ..++.++..|.. ....
T Consensus 121 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~-~~~~v~~~~~l~~l~~~L~~~~~~~~ 199 (684)
T 4gmo_A 121 LTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE-IHEAVATKQTILRLLFRLISADIAPQ 199 (684)
T ss_dssp HHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHTCHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHhcccHHHHHHHHHhcCCCcH
Confidence 4444333211 01 12334566777777776443 222 235566666522 2346
Q ss_pred HHHHHHHHHHHHHHHHhch
Q psy14676 133 STNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 133 ~~r~~ai~~l~~la~~~~~ 151 (1827)
.++..+.+||..+++....
T Consensus 200 ~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 200 DIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCHH
Confidence 7999999999999876544
No 102
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.90 E-value=0.00017 Score=82.29 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=45.0
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHH
Q psy14676 86 PQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLIL 165 (1827)
Q Consensus 86 ~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~ 165 (1827)
..++|+++.||..|+..+ +. .++..|.+++++.||..+...+ +. +.+.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~~----------~~L~ 104 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------PR----------EQLS 104 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------CS----------GGGG
T ss_pred HHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------CH----------HHHH
Confidence 445899999999988854 22 2355666778899999987643 11 3456
Q ss_pred hhcccCchHHHHHHHH
Q psy14676 166 KYSREEDDELREFCLQ 181 (1827)
Q Consensus 166 ~~~~~~~delRe~al~ 181 (1827)
..+++++.++|..+..
T Consensus 105 ~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 105 ALMFDEDREVRITVAD 120 (244)
T ss_dssp GTTTCSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 6678889999966544
No 103
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.79 E-value=0.11 Score=65.96 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=105.9
Q ss_pred hhhhHHHHHHhhhhhhh---HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcch--hHHHHHHHHHHHHHHHHhCC
Q psy14676 1174 LPVCLPILLDRLRNEIT---RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKN--QRALKLSTLLLLDTLLVNYP 1248 (1827)
Q Consensus 1174 l~~lL~~Ll~~L~~e~t---R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~--~r~lR~~al~aL~~L~~~~~ 1248 (1827)
-...++.|.+|+.+.+- |+.|+.++..++.... ...-...++.|...|++. +.++-++++++|..+...-.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 44577888899987543 9999999998875321 122345677777777754 45566678888876655322
Q ss_pred CC----cC----h---HhH-------HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccC
Q psy14676 1249 SA----IS----T---EML-------NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTD 1310 (1827)
Q Consensus 1249 ~~----l~----~---~~~-------~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~ 1310 (1827)
.. .+ . .+. ..-++.|..++...|.++|-.++.+|..++...|..+. + .+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q---------~---~I- 161 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ---------Q---II- 161 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH---------H---HH-
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH---------H---HH-
Confidence 10 00 0 011 13466677889999999999999999999998764221 0 00
Q ss_pred CCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh
Q psy14676 1311 LTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN 1347 (1827)
Q Consensus 1311 ~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~ 1347 (1827)
+ ..|.-++.++..+.|..+-+|..|...|..+..+|
T Consensus 162 l-~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 162 L-VSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp H-HSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-hCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence 0 11456788899999999999999999888877665
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.60 E-value=0.12 Score=62.67 Aligned_cols=125 Identities=14% Similarity=0.219 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCC
Q psy14676 51 DVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNK 130 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~ 130 (1827)
+...+.=|-. ++.+|-..+......-+++++..+.|.+..||+.|+..|..+|.. +....+.+.|.+-|+. +
T Consensus 41 ~~k~K~LaaQ----~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqt-d 112 (507)
T 3u0r_A 41 GTKEKRLAAQ----FIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQT-D 112 (507)
T ss_dssp CHHHHHHHHH----HHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTC-C
T ss_pred CHHHHHHHHH----HHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhc-c
Confidence 4555554444 444444445456678899999999999999999999888888766 5677777777777765 4
Q ss_pred CHHHHHHHHHHHHHHHHHhchh-hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC
Q psy14676 131 STSTNRTYIQCFAAICRQAGHR-FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 131 ~~~~r~~ai~~l~~la~~~~~~-~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p 191 (1827)
++.....+=++|.++.+..+.. +...+..|. . .++.+||.++..+..=+...|
T Consensus 113 d~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~----~----~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 113 DSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL----Q----GEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----H----SCHHHHHHHHHHHHHHGGGSC
T ss_pred chHHHHHHHHHHHHHHhcChHHHHHHHHHHHc----c----cchHHHHHHHHHHHHHHhhcc
Confidence 5666777777888888776643 222222222 2 468899999887644444444
No 105
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.50 E-value=0.0054 Score=74.61 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhh
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLP 86 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~ 86 (1827)
-+|+.++-+|.++ ..+|+.. . ++-.|+..+. ...|++|.+++-.|-.+ .+.+.. .+.++++++.
T Consensus 243 PVRETaAQtLGaL-~hLp~e~-----~----IL~qLV~~l~-~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~ 306 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGPN-----D----IIEQLVGFLD-SGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVS 306 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCSC-----C----HHHHHTTGGG-CSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHH
T ss_pred ehHHHHHHHHHHH-HhCChhH-----H----HHHHHHhhcC-CCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHh
Confidence 4999999999999 8998862 2 2233333444 45899999999999988 333333 6789999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHH
Q psy14676 87 QLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLIL 165 (1827)
Q Consensus 87 ~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~ 165 (1827)
.|+|++-.||..|+.+|.-++ .++.++.++..+...|.+ ++-.......++.|+.++..-...-. .+.++|.+.
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~ 381 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIF 381 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTG
T ss_pred hcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHH
Confidence 999999999999999998888 445677777888777754 22234567788999999886542111 137888888
Q ss_pred hhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhcc
Q psy14676 166 KYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITY 211 (1827)
Q Consensus 166 ~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~ 211 (1827)
-++...-.+||.+.+.++..|. ...++.++++.+--
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILL 417 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLI 417 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHh
Confidence 8888889999999988887666 44567777776543
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.47 E-value=0.069 Score=59.30 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=71.7
Q ss_pred CchhHHHHHHHHHHHhhc-cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhccc
Q psy14676 1408 QEEGTRNVVAECLGKLTL-IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSI 1486 (1827)
Q Consensus 1408 ~~e~vR~~aAecLGkL~~-~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~ 1486 (1827)
+.=+||..+|.++|+++. .+|+..+|.+.+..+++++.+|..+...++-.........+
T Consensus 116 ~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d-------------------- 175 (240)
T 3l9t_A 116 NNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN-------------------- 175 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--------------------
T ss_pred CCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--------------------
Confidence 334588999999999996 88998889999999999999998888776542211000111
Q ss_pred ccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhh
Q psy14676 1487 KLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVK 1527 (1827)
Q Consensus 1487 ~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~ 1527 (1827)
.+.++|.+-.+..|++..||.+.+-.|..+.|..+
T Consensus 176 ------p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 176 ------PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 13577888889999999999999999999887544
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.98 E-value=0.39 Score=61.08 Aligned_cols=299 Identities=16% Similarity=0.194 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhccCC------------C
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQ-EDVSVQLEALDILSDLLSRFGAL------------L 73 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~-~~~~v~~~al~iL~~l~~~~~~~------------l 73 (1827)
+-|..+-.+||.+..+-|.. |-..=+|.|++.++++ +|.++-..+|++|..++..-+.. +
T Consensus 37 eDRR~Av~~Lk~~sk~y~~~-------Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~ 109 (651)
T 3grl_A 37 DDRRNAVRALKSLSKKYRLE-------VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL 109 (651)
T ss_dssp HHHHHHHHHHHHTTTTTTTH-------HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred hHHHHHHHHHHHHHHHhHHH-------hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence 45778888999997666553 3444568888888554 58888888999997766543210 0
Q ss_pred Cch-------hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH------HHHHHHHhccCCCCHHHHHHHHH
Q psy14676 74 PSF-------HFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK------LIDFLLEGLTTNKSTSTNRTYIQ 140 (1827)
Q Consensus 74 ~~~-------~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~------l~~~ll~~L~~~~~~~~r~~ai~ 140 (1827)
+-. .+.-++.++..|++.+-.+|-.|+++|..++...+...... -++.++..|.+ ....+|..++.
T Consensus 110 ~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneall 188 (651)
T 3grl_A 110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHH
Confidence 000 12457778889999999999999999999999887654333 34667777764 45789999999
Q ss_pred HHHHHHHHhch--hhHHhHHHHHHHHHhhcccC----chHHHHHHHHHHHHHHHhCCC---ccc--cchHHHHHHHHHHh
Q psy14676 141 CFAAICRQAGH--RFAEHIERVMPLILKYSREE----DDELREFCLQACEAFVQRCPK---EIT--PHIQSITELCLTYI 209 (1827)
Q Consensus 141 ~l~~la~~~~~--~~~p~l~~i~p~l~~~~~~~----~delRe~al~ale~~~~~~p~---e~~--p~l~~ii~~ll~~l 209 (1827)
.|..+++...+ ++. -++..++.++.++..+ ...+.+-|+..+..+++.-+. .|+ .+++.+.+++
T Consensus 189 LL~~Lt~~n~~iQklV-AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL---- 263 (651)
T 3grl_A 189 LLQALTRSNGAIQKIV-AFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF---- 263 (651)
T ss_dssp HHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG----
T ss_pred HHHHHhcCCHHHHHHH-HHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh----
Confidence 99999987653 222 1345667777776543 347888899999999886542 121 2444443322
Q ss_pred ccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHH-----HHHHHHHHHHHcCCc-----h
Q psy14676 210 TYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRA-----AAKCLEAIIATRRDL-----I 279 (1827)
Q Consensus 210 ~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRra-----Aak~L~~l~~~~~~~-----l 279 (1827)
..+ +++..|.-.|. +..++..++....+. -
T Consensus 264 ~~~----------------------------------------~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~n 303 (651)
T 3grl_A 264 EVG----------------------------------------DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSC 303 (651)
T ss_dssp CCC----------------------------------------SCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred CCC----------------------------------------ccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 110 00124653332 333444443321110 0
Q ss_pred hh-hHH-hhhHHHHhhcCCC--CHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHh-------hhHHHH
Q psy14676 280 GD-MYR-LVSPPLIARFKER--EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLST-------QVPSLV 348 (1827)
Q Consensus 280 ~~-~~~-~v~p~L~~~l~e~--ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~lp~Iv 348 (1827)
+. +++ .+++.|+..+... ...+|..|+.+++.+++.... ....+.. ..|.++
T Consensus 304 Q~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~-----------------~Q~~fa~~~vp~~~~~p~li 366 (651)
T 3grl_A 304 QKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV-----------------NQDYFASVNAPSNPPRPAIV 366 (651)
T ss_dssp HHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH-----------------HHHHHHHCEESSSSCEEHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH-----------------HHHHHhhccCCCCCCcChHH
Confidence 00 111 3455566554333 678999999999999864321 0111111 236677
Q ss_pred HHHHHHhccCC-HhHHHHHHHHHHHHHH
Q psy14676 349 KALQCQLREKS-IRTRQDCLALLRELVQ 375 (1827)
Q Consensus 349 ~~l~~~L~d~~-~~vR~a~~~ll~~L~~ 375 (1827)
..+...+++.+ ..+|.+++.++.....
T Consensus 367 ~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 367 VLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 76766666654 6789888777665553
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.94 E-value=0.0016 Score=74.20 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=11.7
Q ss_pred hccCCHhHHHHHHHH
Q psy14676 355 LREKSIRTRQDCLAL 369 (1827)
Q Consensus 355 L~d~~~~vR~a~~~l 369 (1827)
|+|+++.||.++...
T Consensus 226 L~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 226 LDEPDPEVRLAIAGR 240 (244)
T ss_dssp CCCCCHHHHHHHHCC
T ss_pred ccCCCHHHHHHHHHH
Confidence 489999999877643
No 109
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.69 E-value=0.077 Score=70.18 Aligned_cols=89 Identities=18% Similarity=0.303 Sum_probs=66.1
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh-HH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ-LY--TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~-~~--~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
.++| +++.|+++++..|..|+.||+.+++.-+.. .+ ...+..++..+..+.+.++|..+..+|..++...+..+..
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 3555 446789999999999999999999753322 11 2356677777666778999999999999999988877666
Q ss_pred hH--HHHHHHHHhhc
Q psy14676 156 HI--ERVMPLILKYS 168 (1827)
Q Consensus 156 ~l--~~i~p~l~~~~ 168 (1827)
|+ .+++|.+...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 54 34666666554
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.13 E-value=0.26 Score=55.59 Aligned_cols=174 Identities=11% Similarity=0.102 Sum_probs=105.7
Q ss_pred HHHhhhhcCCCCh--hHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHH
Q psy14676 1260 TVELAPLVSESDL--HIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 1337 (1827)
Q Consensus 1260 l~~L~~ll~d~D~--~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa 1337 (1827)
++.|..+++.+|. ++...+...+..++...+..- ..+ .....+|.+++.+.+++++++..|+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r-------------~~I---~~~G~Ip~LV~lL~s~~~~vq~~Aa 73 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEAR-------------KRV---NQLRGILKLLQLLKVQNEDVQRAVC 73 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHH-------------HHH---HHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHH-------------HHH---HHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 4566678887776 777777778888876543110 000 0123568899999999999999999
Q ss_pred HHHhhhhhhhh--------hhhHHHHHHhhhc--CchhhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhh-
Q psy14676 1338 YTLGSIAVGNL--------QQYVPFVLKEIEN--QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHC- 1405 (1827)
Q Consensus 1338 ~aLG~i~~~~l--------~~~LP~Il~~i~~--~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~- 1405 (1827)
.+|++++.++- .--+|.+++.+.. ....|.....+|..+-.. +..++ .+..-.+.|.+.+
T Consensus 74 ~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--------~~~k~~i~~~~i~~Lv~ll~ 145 (233)
T 3tt9_A 74 GALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--------DKLKNLMITEALLTLTENII 145 (233)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--------GGGHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--------hhhHHHHHhccHHHHHHHHh
Confidence 99999876431 1256888888863 334455554445444221 12221 1122234444321
Q ss_pred ----c-----------CCchhHHHHHHHHHHHhhccCC---------CcchHHHHHhhhcC------CHHHHHHHHHHHH
Q psy14676 1406 ----E-----------CQEEGTRNVVAECLGKLTLIDP---------SNLLPRLQESLKSN------SALMRTTVLTAVK 1455 (1827)
Q Consensus 1406 ----~-----------~~~e~vR~~aAecLGkL~~~~p---------~~~lP~L~~~l~~~------~~~~R~t~l~Alk 1455 (1827)
+ ..+..++..++.||..|+..++ ..+++.|..+++.. +...+..++-+|+
T Consensus 146 ~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~ 225 (233)
T 3tt9_A 146 IPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225 (233)
T ss_dssp HHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Confidence 1 1255789999999999998663 24667777776532 3344555565665
Q ss_pred HH
Q psy14676 1456 FT 1457 (1827)
Q Consensus 1456 ~~ 1457 (1827)
.+
T Consensus 226 nL 227 (233)
T 3tt9_A 226 NL 227 (233)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 111
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=95.09 E-value=1.8 Score=57.51 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=88.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHhc--h
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCN---LQLYTKLIDFLLEGLTT--NKSTSTNRTYIQCFAAICRQAG--H 151 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~---~~~~~~l~~~ll~~L~~--~~~~~~r~~ai~~l~~la~~~~--~ 151 (1827)
.+++.++..+.+-+..+...+..|+..++-..+ +-.++.+++.+...|.. -..+....+++.++..+++... +
T Consensus 339 ~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 339 IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 455666666888999999999999999999777 88888888888888866 4556667788999999998764 4
Q ss_pred hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC
Q psy14676 152 RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 152 ~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p 191 (1827)
.+..|+..++..++..+.-.|..---.+++.+..+....|
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 5778999999999988877677655566666666666554
No 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.16 E-value=0.17 Score=56.94 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=100.0
Q ss_pred HHHHhhhhcCCch--hHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q psy14676 1398 WAQLFLHCECQEE--GTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDK 1467 (1827)
Q Consensus 1398 ~~~L~~~~~~~~e--~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~ 1467 (1827)
.+.+++.+.++++ .++..+|.+|..|+.-++ ...+|.|.++|+++++.++..++.||+.+..+.+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~----- 84 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN----- 84 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-----
Confidence 3555555555554 677788899999997663 2567999999999999999999999999975321
Q ss_pred hHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc-CCchHHHHHHHHHhhhhhhhh--hhhhHHHHHHHHHhhhc-
Q psy14676 1468 DFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE-DKNGEVQNLAVKCLGPLVNKV--KEFQVETIVDALCSNMV- 1543 (1827)
Q Consensus 1468 ~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~-D~~~~Vr~~a~~~Lg~L~~~l--~~~~~~~~v~~l~~~l~- 1543 (1827)
.-+ .++ .....+|.++.+|. .++..++.+|+.+|-.|...- ...-...-+.+|...+.
T Consensus 85 ~nk-~~I-----------------~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~ 146 (233)
T 3tt9_A 85 DNK-LEV-----------------AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIII 146 (233)
T ss_dssp HHH-HHH-----------------HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCH
T ss_pred HHH-HHH-----------------HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhc
Confidence 111 000 11235699999997 478999999999999987432 22223344555655432
Q ss_pred ---cc----ccccccCCccchhHHHHHHHhhhhcc
Q psy14676 1544 ---SD----KEQLRDISSIGLKTVISVVYCLGDRN 1571 (1827)
Q Consensus 1544 ---~~----~~~~~~~~~~~vRr~Al~~l~s~a~~ 1571 (1827)
+. +...+...+.+|++-|..+|...+..
T Consensus 147 p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~ 181 (233)
T 3tt9_A 147 PFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181 (233)
T ss_dssp HHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS
T ss_pred cccCCcccccccccccchHHHHHHHHHHHHHHhcC
Confidence 10 00011234568999999888777654
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=93.30 E-value=1.7 Score=47.02 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh----hhHHHHHHHH
Q psy14676 1124 SYDFAPFTSDIYQCTLVRLKAADIDQ-EVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE----ITRLTTVKAL 1198 (1827)
Q Consensus 1124 ~~~~~~~l~~l~~~ll~~L~~~D~d~-eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e----~tR~~av~al 1198 (1827)
.-.+.||+.++++.++..+-+..... .+|+.|...++.+...+|.....-.+.+...+.+.+.++ .+...|+.++
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL 157 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCL 157 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 35678999999999999887655433 899999999999999998755444566666666666544 3589999988
Q ss_pred HHHhc
Q psy14676 1199 TKIAA 1203 (1827)
Q Consensus 1199 ~~ia~ 1203 (1827)
..++.
T Consensus 158 ~~lG~ 162 (196)
T 4atg_A 158 SILSK 162 (196)
T ss_dssp HHHCH
T ss_pred HHhHH
Confidence 88774
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.82 E-value=16 Score=41.50 Aligned_cols=208 Identities=11% Similarity=0.195 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCch
Q psy14676 94 AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDD 173 (1827)
Q Consensus 94 ~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~d 173 (1827)
..|-....-+..++-.-.+.+++++++.+++. ..+.+..+|+..+..+...+..-+. +...+++.+..+++++++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k~~----l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVKVE----LLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH
Confidence 45555555555555555567889999999984 4456789999999999999866543 466677777777888888
Q ss_pred HHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy14676 174 ELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD 253 (1827)
Q Consensus 174 elRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdd 253 (1827)
.+...+.+++.. +.|.+++++...|+.. +.
T Consensus 105 ~V~K~~I~~~~~---------------iY~~~l~~i~~~~~~~-----------------------------------~~ 134 (257)
T 3gs3_A 105 QVIKRVIQACGS---------------IYKNGLQYLCSLMEPG-----------------------------------DS 134 (257)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHHHHTTSSSCC-----------------------------------HH
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHhcCCCCc-----------------------------------ch
Confidence 888788776543 6677888876544320 01
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh-hhcccCCCCCC--CCC-C
Q psy14676 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK-GTRTFSPLTPS--DPN-Q 329 (1827)
Q Consensus 254 dD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~-~~~~~~~~~~~--~~~-~ 329 (1827)
++..|.. +..+=..++..+......||..++..+..++- ++......+.. +.+ .
T Consensus 135 ~~~~W~~----------------------m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~ 192 (257)
T 3gs3_A 135 AEQAWNI----------------------LSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLA 192 (257)
T ss_dssp HHHHHHH----------------------HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGG
T ss_pred HHHHHHH----------------------HHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHH
Confidence 1235652 11111233345566789999999998888663 33211111100 000 0
Q ss_pred CCCCCCh---HhhHHhhhHHHHHHHHHHhccC--CHhHHHHHHHHHHHHHHhCc
Q psy14676 330 MDQEDSP---LCLLSTQVPSLVKALQCQLREK--SIRTRQDCLALLRELVQTLP 378 (1827)
Q Consensus 330 ~~~~~~~---~~~l~~~lp~Iv~~l~~~L~d~--~~~vR~a~~~ll~~L~~vl~ 378 (1827)
+-+..++ ...|+..-..++..++..+..+ +...-.+++..|..++..=|
T Consensus 193 ~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP 246 (257)
T 3gs3_A 193 DVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRP 246 (257)
T ss_dssp GSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCc
Confidence 0111222 2557777777778788776654 23334467766666666554
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.53 E-value=46 Score=40.74 Aligned_cols=90 Identities=10% Similarity=-0.104 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCC
Q psy14676 1047 SALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYD 1126 (1827)
Q Consensus 1047 ~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~ 1126 (1827)
+.+.|.-|..++..+..+.++. -..-+..++..+.|++..||..|++.+..+++ .
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l--------------~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck----------~- 95 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPEL--------------ADSAINAQLDLCEDEDVSIRRQAIKELPQFAT----------G- 95 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGG--------------HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC----------T-
T ss_pred CHHHHHHHHHHHHHHHhhChhh--------------HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh----------h-
Confidence 5888999999999887776654 44567788899999999999998877766663 1
Q ss_pred cchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1127 FAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1127 ~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
.++..+.+.+...|. .++.......-.+|-+++..
T Consensus 96 --~~i~kiaDvL~QlLq--tdd~~E~~~V~~sL~sllk~ 130 (507)
T 3u0r_A 96 --ENLPRVADILTQLLQ--TDDSAEFNLVNNALLSIFKM 130 (507)
T ss_dssp --TCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhHHHHHHHHHh--ccchHHHHHHHHHHHHHHhc
Confidence 356677666655555 44555556666666666654
No 116
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=87.77 E-value=3.9 Score=44.28 Aligned_cols=121 Identities=11% Similarity=0.196 Sum_probs=80.7
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHhc
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLT-----TNKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~-----~~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
|...+.++++. ..|+.|...|.. +..+.++++.++..+. .-.+...-...++.+.++...-.
T Consensus 12 yf~~It~a~~~-------~~r~~aL~sL~~------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~ 78 (196)
T 4atg_A 12 YFDKILSMIKS-------DMKDIAIECLEK------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH 78 (196)
T ss_dssp HHHHHHHHHTS-------TTHHHHHHHHHH------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHh-------HHHHHHHHHHhc------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC
Confidence 44555555554 347766665554 3334455555555442 12345666777777788777666
Q ss_pred hhhHHhHHHHHHHHHhhccc---CchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 151 HRFAEHIERVMPLILKYSRE---EDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 151 ~~~~p~l~~i~p~l~~~~~~---~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
-.+.||+..++|.++.++-. ....+|+.|-.-+..++++++.....--+.++..+.+.+
T Consensus 79 l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l 140 (196)
T 4atg_A 79 VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVW 140 (196)
T ss_dssp CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHH
Confidence 78899999999999987521 233899999999999999987654444466777777655
No 117
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.34 E-value=44 Score=46.07 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=116.2
Q ss_pred hhhHHHHHHhhhhhh-hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhc----chhHHHHHHHHHHHHHHHHhCCC
Q psy14676 1175 PVCLPILLDRLRNEI-TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLR----KNQRALKLSTLLLLDTLLVNYPS 1249 (1827)
Q Consensus 1175 ~~lL~~Ll~~L~~e~-tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lr----k~~r~lR~~al~aL~~L~~~~~~ 1249 (1827)
+..+..+.+.++++. +-..|+.++....... . | -.+.+..+..++. +.++.+|.+++-+++.|+.++..
T Consensus 355 ~~a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~-~----P-t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~ 428 (1056)
T 1lsh_A 355 SEALLFLKRTLASEQLTSAEATQIVASTLSNQ-Q----A-TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 428 (1056)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTC-C----C-CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhccC-C----C-CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666543 3455667666543321 1 1 1234444444444 34577999999999998875321
Q ss_pred CcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCC
Q psy14676 1250 AISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTS 1329 (1827)
Q Consensus 1250 ~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s 1329 (1827)
.- ..++. ..++.+...+.+.+...+
T Consensus 429 ~~-----------------------------------~~c~~--------------------~~v~~i~~~l~~~~~~~~ 453 (1056)
T 1lsh_A 429 NT-----------------------------------VSCPD--------------------ELLQPLHDLLSQSSDRAK 453 (1056)
T ss_dssp TC-----------------------------------SSCCG--------------------GGTHHHHHHHHHHHHTTC
T ss_pred cC-----------------------------------CCCCH--------------------HHHHHHHHHHHHHHhcCC
Confidence 10 00110 012345555666666667
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc------C--chhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHH
Q psy14676 1330 EEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN------Q--PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQL 1401 (1827)
Q Consensus 1330 ~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~------~--~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L 1401 (1827)
++-+..+..+||++|... -++.|.+.+.. + ...|-..++||+.+.... +.. ..+-+|+.+
T Consensus 454 ~~~~~~~LkaLGN~g~p~---~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~------p~~---v~~il~~i~ 521 (1056)
T 1lsh_A 454 EEEIVLALKALGNAGQPN---SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD------PRK---VQEIVLPIF 521 (1056)
T ss_dssp HHHHHHHHHHHHHHTCGG---GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC------HHH---HHHHHHHHH
T ss_pred hHHHHHHHHHhhccCChh---HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc------hHH---HHHHHHHHh
Confidence 778888888899988753 23334433321 1 123344566665543210 111 112234444
Q ss_pred hhhhcCCchhHHHHHHHHHHHhhccCCC-cchHHHHHhhhc-CCHHHHHHHHHHHHHHhhh
Q psy14676 1402 FLHCECQEEGTRNVVAECLGKLTLIDPS-NLLPRLQESLKS-NSALMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1402 ~~~~~~~~e~vR~~aAecLGkL~~~~p~-~~lP~L~~~l~~-~~~~~R~t~l~Alk~~~~~ 1460 (1827)
.+ ...+.++|-+|...| -..+|. .++..+.+.+.. ++..++..+.+.|+.+...
T Consensus 522 ~n--~~e~~EvRiaA~~~L---m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 522 LN--VAIKSELRIRSCIVF---FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HC--TTSCHHHHHHHHHHH---HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cC--CCCChHHHHHHHHHH---HHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 33 233455777665443 334564 688888888875 6899999999999999854
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.54 E-value=76 Score=38.04 Aligned_cols=219 Identities=11% Similarity=0.181 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHH
Q psy14676 96 RKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 175 (1827)
Q Consensus 96 Rk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~del 175 (1827)
|-....-+..++-.-.+.++.++++.+++.-. +.+..+|+..++.+...+....+ ++..+++.+..++.++++.+
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~-d~~~~vRk~~a~FieEa~~~~~e----l~~~~l~~L~~LL~d~d~~V 116 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQA-DKSIEVRKFVIGFIEEACKRDIE----LLLKLIANLNMLLRDENVNV 116 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHHH
Confidence 33333334444443455677788888886543 45688999999999998875443 35667777777777778888
Q ss_pred HHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcc
Q psy14676 176 REFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 255 (1827)
Q Consensus 176 Re~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD 255 (1827)
...+.+++.. +.|.+++++..+|+.. +..+
T Consensus 117 ~K~~I~~~ts---------------lYpl~f~~i~~~~~~~-----------------------------------~~~e 146 (386)
T 3o2t_A 117 VKKAILTMTQ---------------LYKVALQWMVKSRVIS-----------------------------------ELQE 146 (386)
T ss_dssp HHHHHHHHHH---------------HHHHHHHHHHHC-CCC-----------------------------------HHHH
T ss_pred HHHHHHHHHH---------------HHHHHHHHHhcCCCcc-----------------------------------hhHH
Confidence 8788776644 4567777775544320 0012
Q ss_pred chhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh-hhcccCCC--CC---CCCC-
Q psy14676 256 MSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK-GTRTFSPL--TP---SDPN- 328 (1827)
Q Consensus 256 ~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~-~~~~~~~~--~~---~~~~- 328 (1827)
..|..= ..+-..++..+...++.||..++..+..++- ++...... +. .+.+
T Consensus 147 ~~W~~m----------------------~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL 204 (386)
T 3o2t_A 147 ACWDMV----------------------SAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISL 204 (386)
T ss_dssp HHHHHH----------------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCG
T ss_pred HHHHHH----------------------HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCH
Confidence 346521 1111223344566789999999998887663 33221110 00 0000
Q ss_pred CCCCCCCh---HhhHHhhhHHHHHHHHHHhccC--CHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHH
Q psy14676 329 QMDQEDSP---LCLLSTQVPSLVKALQCQLREK--SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSV 395 (1827)
Q Consensus 329 ~~~~~~~~---~~~l~~~lp~Iv~~l~~~L~d~--~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~ 395 (1827)
.+-+..++ ...|+..-..++..+++.+.++ ++..--+++..|..++..=| .+.+.+++++...
T Consensus 205 ~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP----~~~~rIl~aL~~l 272 (386)
T 3o2t_A 205 DRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP----MFMSEVIQAYETL 272 (386)
T ss_dssp GGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG----GGHHHHHHHHHHH
T ss_pred hhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHhh
Confidence 00011121 2457777788888888888763 23344467766677776655 3456777776654
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.24 E-value=19 Score=49.80 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHhhccCCCcchHHHHHhh--hcCCHHHHHHHHHHHHH
Q psy14676 1410 EGTRNVVAECLGKLTLIDPSNLLPRLQESL--KSNSALMRTTVLTAVKF 1456 (1827)
Q Consensus 1410 e~vR~~aAecLGkL~~~~p~~~lP~L~~~l--~~~~~~~R~t~l~Alk~ 1456 (1827)
..+|..|..+|.+++..+|+.+-+.+.... ...++.+|.+++..+=.
T Consensus 492 ~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 347788899999999988888888888888 56789999887776643
No 120
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=81.93 E-value=1.2e+02 Score=38.77 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhccCCCC-chhHHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHH
Q psy14676 57 EALDILSDLLSRFGALLP-SFHFVILTALLPQ--LSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTS 133 (1827)
Q Consensus 57 ~al~iL~~l~~~~~~~l~-~~~~~il~~ll~~--L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~ 133 (1827)
.-|..+-..+....+.+. ..+..++.+++.. .-..+..+.+.=+.=|+.++...+ .++...+..++..+... +.
T Consensus 113 ~~L~~~L~aLs~~Vs~Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~-~yl~~vl~mLV~~F~~~--~~ 189 (649)
T 3tj1_A 113 KNLNILLDILSSNINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIP-KWWQDVSMILVSCFILP--IK 189 (649)
T ss_dssp HHHHHHHHHHHHTGGGGCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHGGGSC--HH
T ss_pred HHHHHHHHHHHhhhhhcCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhccCC--Cc
Confidence 335555555566666774 4677788887765 112345677777777888876654 67888888889888643 22
Q ss_pred HHHHHHHHHHHHHHHhchh
Q psy14676 134 TNRTYIQCFAAICRQAGHR 152 (1827)
Q Consensus 134 ~r~~ai~~l~~la~~~~~~ 152 (1827)
.....=.+|..|.+..|-.
T Consensus 190 ~~~~~H~~L~~Il~lvP~s 208 (649)
T 3tj1_A 190 QTVCHHDMLKYFLRMIPSS 208 (649)
T ss_dssp HHHHHHHHHHHHHHHCGGG
T ss_pred ccHHHHHHHHHHHHHcCCC
Confidence 2233556667777766643
No 121
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=81.85 E-value=21 Score=41.60 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=110.2
Q ss_pred HhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH-HHHHHHHHHHHhC
Q psy14676 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ-DCLALLRELVQTL 377 (1827)
Q Consensus 299 e~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~-a~~~ll~~L~~vl 377 (1827)
-.||.+++.-+...++.. +.........+|.++.+++.--+...|..|. -.++++..+...+
T Consensus 43 R~vKkeiLkLiet~i~~~-----------------~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl 105 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRS-----------------NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKL 105 (321)
T ss_dssp HHHHHHHHHHHHHHHTTC-----------------SCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-----------------CCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH
Confidence 357788887777776432 1233456777899888888877777788887 8888899999999
Q ss_pred cccccCchhhHHHHHHHH----hhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q psy14676 378 PGCLAPSLPALIPDVTSV----AEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 453 (1827)
Q Consensus 378 ~~~l~~~l~~Llp~i~~~----L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~ 453 (1827)
++.+.+.+|.++..+..+ .+++ -+| -.-.|..-.+.+..+..
T Consensus 106 ~~~i~~~vp~Il~~VFe~TL~MI~~d---------------------------f~e-------yPehR~~Ff~LL~ai~~ 151 (321)
T 1w9c_A 106 GGHITAEIPQIFDAVFECTLNMINKD---------------------------FEE-------YPEHRTNFFLLLQAVNS 151 (321)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHSST---------------------------TTC-------SHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhcc---------------------------ccc-------ChHHHHHHHHHHHHHHH
Confidence 998888888888886544 3210 011 23488888999999998
Q ss_pred Hhhhh-hh---hhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 454 TRRDL-IG---DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 454 ~~~~~-f~---~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
++... |. +.|..++..++-.++...++|.+.+++.+.++++.++
T Consensus 152 ~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 152 HCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 87744 33 4677777777777888999999999999999998764
No 122
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=80.16 E-value=34 Score=39.94 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=120.9
Q ss_pred HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHH
Q psy14676 284 RLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTR 363 (1827)
Q Consensus 284 ~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR 363 (1827)
..++..|+..+..=+++.|.++...|..+++.-.... -.+..++.. =|.|+..++++... +++-
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~-------------~p~v~Yl~~-~peil~~L~~gYe~--~diA 140 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTR-------------TPTVEYICT-QQNILFMLLKGYES--PEIA 140 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB-------------CHHHHHHHT-CTHHHHHHHHGGGS--TTTH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCC-------------CchhHHHHc-CHHHHHHHHHhhcc--chhH
Confidence 3567778888888899999999999999997431100 113356666 48888999988753 4455
Q ss_pred HHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHH
Q psy14676 364 QDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRA 443 (1827)
Q Consensus 364 ~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~ 443 (1827)
..|-.+|+++... +.+... +|.
T Consensus 141 l~~G~mLRecir~---------e~la~~---iL~---------------------------------------------- 162 (341)
T 1upk_A 141 LNCGIMLRECIRH---------EPLAKI---ILW---------------------------------------------- 162 (341)
T ss_dssp HHHHHHHHHHHTS---------HHHHHH---HHH----------------------------------------------
T ss_pred hHHHHHHHHHHHh---------HHHHHH---Hhc----------------------------------------------
Confidence 5555555555432 111111 110
Q ss_pred HHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhch
Q psy14676 444 AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQ 523 (1827)
Q Consensus 444 a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~ 523 (1827)
.+.|..+ +.+.......|..+|+.++.+|+..... + ..+.+...
T Consensus 163 ------------~~~f~~f--------F~yv~~~~FdiasDAf~TfkelLt~Hk~---l-------------vaefL~~n 206 (341)
T 1upk_A 163 ------------SEQFYDF--------FRYVEMSTFDIASDAFATFKDLLTRHKL---L-------------SAEFLEQH 206 (341)
T ss_dssp ------------SGGGGHH--------HHHTTCSSHHHHHHHHHHHHHHHHSSHH---H-------------HHHHHHHT
T ss_pred ------------cHHHHHH--------HHHhcCCCchHHHHHHHHHHHHHhccHH---H-------------HHHHHHHh
Confidence 0122222 2356667778888888888888764331 0 01122233
Q ss_pred hhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhH
Q psy14676 524 VPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEV 603 (1827)
Q Consensus 524 ~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV 603 (1827)
-..++.....-+...+-.++-..+..|.+.+-|+ .|+.+|. . ....+.-+.+++.+|.|++.-+
T Consensus 207 yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr-~N~~vM~-----~----------Yis~~~nLkl~M~LL~d~sk~I 270 (341)
T 1upk_A 207 YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR-HNFTIMT-----K----------YISKPENLKLMMNLLRDKSRNI 270 (341)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSG-GGHHHHH-----H----------HTTCHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCc-hHHHHHH-----H----------HhCCHHHHHHHHHHhcCchhch
Confidence 3445555555555555445555666666655553 1111111 0 1123566788999999999999
Q ss_pred HHHHHHhhhhHH
Q psy14676 604 QNLAVKCLGPLF 615 (1827)
Q Consensus 604 ~~~A~~~lg~l~ 615 (1827)
|..|.-...-.|
T Consensus 271 q~EAFhVFKvFV 282 (341)
T 1upk_A 271 QFEAFHVFKVFV 282 (341)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhheeeee
Confidence 999988665443
No 123
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=79.85 E-value=37 Score=39.57 Aligned_cols=161 Identities=11% Similarity=0.164 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHH----hcCCCHHHH-HHHHHHHHHHHhhccCCCCchhHHHH
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAI----EKQEDVSVQ-LEALDILSDLLSRFGALLPSFHFVIL 81 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l----~~~~~~~v~-~~al~iL~~l~~~~~~~l~~~~~~il 81 (1827)
.+|.|..--||.+-.-+.... -...|+..++|.|++++ .+ ..|..| .+.|..++.++.+++..+.++-+.|+
T Consensus 41 ~lR~vKkeiLkLiet~i~~~~--d~~~v~~~~ippLl~~VL~DY~~-~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il 117 (321)
T 1w9c_A 41 SMRTVKRETLKLISGWVSRSN--DPQMVAENFVPPLLDAVLIDYQR-NVPAAREPEVLSTMAIIVNKLGGHITAEIPQIF 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS--CHHHHHHHTHHHHHHHHHHHHHT-SCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHh-CCcccccHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 467777777887777775543 23467888999998766 21 123333 47899999999999999999888998
Q ss_pred HHHhhh----cC---CCCHHHHHHHHHHHHHHHHhhc-------hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy14676 82 TALLPQ----LS---SPRQAVRKRTIVALSHLVMSCN-------LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 82 ~~ll~~----L~---~~~~~VRk~Ai~aL~~l~~~~~-------~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~ 147 (1827)
+.++++ .+ ++-|..|..=..-|..+..+|- ++.+.-+++.++...+. +.+.+..+.+.++-.+..
T Consensus 118 ~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH-~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 118 DAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKH-TMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHH
Confidence 888766 34 2568999888888887777654 44566677888877754 457777777777766654
Q ss_pred Hhc-------hhhHHhHHHHHHHHHhhcccC
Q psy14676 148 QAG-------HRFAEHIERVMPLILKYSREE 171 (1827)
Q Consensus 148 ~~~-------~~~~p~l~~i~p~l~~~~~~~ 171 (1827)
... ..+..|+-.++.-++..+.|.
T Consensus 197 n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 197 NVAQEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 432 345566777777777776654
No 124
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=78.18 E-value=60 Score=42.99 Aligned_cols=287 Identities=15% Similarity=0.168 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhh---hhhcCcccccccccccchhhhhhh-hhhhhhhhhhhhhHHHHH
Q psy14676 586 RKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALT---KIAASPLRIDLRPILTDGIPILGS-FLRKNQRALKLSTLLLLD 661 (1827)
Q Consensus 586 ~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~---~~~~~~~~~dl~~~l~~~i~~l~~-~l~~~~~~lk~~~l~~l~ 661 (1827)
..+.++++..+-..+..+.+++..++..|+---+ +++.+ +.|..+.+.|.. ++..++| -.++|.++.
T Consensus 338 ~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-------~vL~r~y~sLe~~~l~e~Hr--l~~aL~~l~ 408 (799)
T 1vsy_4 338 EIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-------KILIDLYDTLADQFINSRHR--IISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-------HHHHHHHHHHTTTTTTCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-------HHHHHHHHHhccccccchhH--HHHHHHHHH
Confidence 4567788888888999999999999998875333 43322 223333444432 2344443 223455554
Q ss_pred HHHhhCC-CcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchh---------hhhhhhHHHhhhhcc
Q psy14676 662 TLLVNYP-SAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEP---------AAASILPQVLQIAKS 731 (1827)
Q Consensus 662 ~l~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~---------~~~~llp~ll~l~~s 731 (1827)
.+..-.- .......+..++..+.+.++-.|+.-+..+++++..++..-|-.+... ...+.+.+-+.-+++
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~ 488 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKC 488 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcc
Confidence 4432111 112345777888888888988999999999999999887554432110 001111111110000
Q ss_pred cccc-----hhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy14676 732 PLLQ-----GAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKF 806 (1827)
Q Consensus 732 ~~~~-----~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~ 806 (1827)
.... +..++ -+.+|.+ ...|.+. ....++++
T Consensus 489 ~~~~~~~~~d~~~~-----~~~~~~s---T~~f~~~------------------------------------v~~f~drv 524 (799)
T 1vsy_4 489 GESSKTFRVDDELL-----NNAFKAS---TTVFQSM------------------------------------LKVYVEKI 524 (799)
T ss_dssp TCCSSSCCCCTTHH-----HHHHHHH---TSTHHHH------------------------------------HHHHHHHH
T ss_pred ccccccccccHHHH-----HHHHHHH---HhhHHHH------------------------------------HHHHHHHH
Confidence 0000 00000 0001110 1122222 22344567
Q ss_pred HHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHH----HHH
Q psy14676 807 LKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQC----FAA 882 (1827)
Q Consensus 807 l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~----l~~ 882 (1827)
+..++++.+.. .+ ..--.++..+...+++++|+.....+..-..++..+...+.+..+ +.+
T Consensus 525 f~llen~~Ee~--------------l~-~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a 589 (799)
T 1vsy_4 525 FQLVDVDLEDS--------------LV-TKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAA 589 (799)
T ss_dssp HHHTTSCCCTH--------------HH-HHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHH
T ss_pred HHHHhcCchHH--------------HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 77776533221 01 123356777888999999999999888866553333334444444 678
Q ss_pred HHHhccccchhhhhhhHHHHHHhhccc------chHH--HHHH----HHHHHHHHhhCCCcccccccccc
Q psy14676 883 ICRQAGHRFAEHIERVMPLILKYSREE------DDEL--REFC----LQACEAFVQRCPKEITPHIQSIG 940 (1827)
Q Consensus 883 L~~~~~~~~~~yl~~ilP~ll~~l~d~------~~~v--re~a----l~Ale~~v~~~~~~i~p~l~~i~ 940 (1827)
++++.|+.|..+++.++..|...+.+. ..++ |+.+ +..+...+.+.+..+.+|-+++.
T Consensus 590 ~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~ 659 (799)
T 1vsy_4 590 LVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELI 659 (799)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHH
Confidence 888888844444444444444322211 1111 2332 44556666667777777765544
No 125
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=75.74 E-value=1.4e+02 Score=35.72 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHh-ccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCc
Q psy14676 1049 LMRTTHQSNQTFNVII-QRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDF 1127 (1827)
Q Consensus 1049 ~~R~~a~~~L~~l~~~-~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~ 1127 (1827)
..|...+.-+.-+..+ .+. .++.+++.+++...|+...||.+....+++..+. -
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps--------------Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-----------~ 94 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT--------------LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-----------D 94 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG--------------GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----------C
T ss_pred HHHHHHHHHHHHHHhccCHH--------------HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----------H
Confidence 4677777777744333 222 2778899999999999999999999999888753 1
Q ss_pred chhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q psy14676 1128 APFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNL 1166 (1827)
Q Consensus 1128 ~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~ 1166 (1827)
..++..+++.+..-+. |.|..|-..+|.|++.+-...
T Consensus 95 ~el~~~~l~~L~~LL~--d~d~~V~K~~I~~~tslYpl~ 131 (386)
T 3o2t_A 95 IELLLKLIANLNMLLR--DENVNVVKKAILTMTQLYKVA 131 (386)
T ss_dssp GGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 1345666666655555 889999999999998876543
No 126
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=64.78 E-value=1.7e+02 Score=35.72 Aligned_cols=197 Identities=15% Similarity=0.158 Sum_probs=116.2
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhH-HHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHF-VIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~-~il 81 (1827)
|.+.--||.--..|..|-....... +-+++.+-..+...+-..+...--.+.|.+||.+...|..-+-..|. -+.
T Consensus 173 SeDpRERd~LktiLhrIY~Kf~~~R----~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~ 248 (449)
T 2npp_B 173 SEDPRERDFLKTTLHRIYGKFLGLR----AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLL 248 (449)
T ss_dssp SSTHHHHHHHHHHHHHHHHSCTTTH----HHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 3444567777777777777775543 23444444445555532222333468999999999999866655555 456
Q ss_pred HHHhhhcCCCCH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-chhhHHhHHH
Q psy14676 82 TALLPQLSSPRQ-AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA-GHRFAEHIER 159 (1827)
Q Consensus 82 ~~ll~~L~~~~~-~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~-~~~~~p~l~~ 159 (1827)
..++|....+.. .--..=..|+..|++.= +.+...++..++..=-. .+....-..+.-+..+.+.. +..|.+.+..
T Consensus 249 ~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~L~~~vi~~LLk~WP~-tns~KevlFL~eleeile~~~~~ef~~i~~~ 326 (449)
T 2npp_B 249 KVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-STLTEPVVMALLKYWPK-THSPKEVMFLNELEEILDVIEPSEFVKIMEP 326 (449)
T ss_dssp HTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHTCCS-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHccchhHHhHHHHHHHHHHHHhcC-cHhHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 677777765543 22223346777776642 33444455555543222 22333344555666666654 4667888888
Q ss_pred HHHHHHhhcccCchHHHHHHHHHH--HHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 160 VMPLILKYSREEDDELREFCLQAC--EAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 160 i~p~l~~~~~~~~delRe~al~al--e~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
++..+-+.++.+.-.|-|.|+..+ +.++... ..+-..++|.++..+
T Consensus 327 lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li----~~n~~~IlPii~p~L 374 (449)
T 2npp_B 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI----SDNAAKILPIMFPSL 374 (449)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH----HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH----HhchhhhHHhhHHHH
Confidence 888888888888888888777654 3333322 234455667666554
No 127
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=56.63 E-value=3.2e+02 Score=32.77 Aligned_cols=228 Identities=14% Similarity=0.172 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhH-HHHHH
Q psy14676 5 KEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHF-VILTA 83 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~-~il~~ 83 (1827)
+..-||.--..|..|-+..... -+-+++.+-..+..-+-..+.-.--.+.|.+||.+...|..-+-..|. -+...
T Consensus 142 DprER~~LktiLhrIY~kf~~~----R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~v 217 (403)
T 3fga_B 142 DPRERDFLKTTLHRIYGKFLGL----RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKV 217 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHH
Confidence 3445665555555555555331 222333333344444422222223358999999999999877766555 45667
Q ss_pred HhhhcCCCCH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHHhHHHHH
Q psy14676 84 LLPQLSSPRQ-AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAEHIERVM 161 (1827)
Q Consensus 84 ll~~L~~~~~-~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p~l~~i~ 161 (1827)
++|.-..+.. .--..=..|+..+++-= +.+...++..++..=-. .+....-..+.-+..+.+..+ ..|.+....++
T Consensus 218 LlPLHk~~~~~~y~~qL~ycv~qf~eKD-p~L~~~vi~~LLk~WP~-tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf 295 (403)
T 3fga_B 218 LLPLHKVKSLSVYHPQLAYCVVQFLEKD-STLTEPVVMALLKYWPK-THSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 295 (403)
T ss_dssp TTGGGGSTTGGGTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHTCCS-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777665543 22234456777777542 33444555555543322 233344445566666666553 66788888888
Q ss_pred HHHHhhcccCchHHHHHHHHHH--HHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccC
Q psy14676 162 PLILKYSREEDDELREFCLQAC--EAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEED 239 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~al--e~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d 239 (1827)
..+-..++.+.-.|-|.|+..+ +.++... ..+-..++|.++..+...-
T Consensus 296 ~~la~ci~S~hfqVAErAL~~wnNe~i~~li----~~n~~~IlPii~p~L~~~~-------------------------- 345 (403)
T 3fga_B 296 RQLAKCVSSPHFQVAERALYYWNNEYIMSLI----SDNAAKILPIMFPSLYRNS-------------------------- 345 (403)
T ss_dssp HHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH----HTTHHHHHHHHHHHHHHTT--------------------------
T ss_pred HHHHHHHCCCCHHHHHHHHHHhccHHHHHHH----HHhHHHHHHHHHHHHHHHH--------------------------
Confidence 8888888878888888777654 3334322 2234445555544331100
Q ss_pred CCCCCCCCCCCCCCccchh--hHHHHHHHHHHHHHHHcCCchhhhH
Q psy14676 240 GEDEGEDDNEYSDDDDMSW--KVRRAAAKCLEAIIATRRDLIGDMY 283 (1827)
Q Consensus 240 ~dde~e~~~e~sdddD~sW--kVRraAak~L~~l~~~~~~~l~~~~ 283 (1827)
...| .||..+..++..+...-+.++....
T Consensus 346 ---------------~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~ 376 (403)
T 3fga_B 346 ---------------KTHWNKTIHGLIYNALKLFMEMNQKLFDDCT 376 (403)
T ss_dssp ---------------SCCSCHHHHHHHHHHHHHHHTTSCCCCCTTH
T ss_pred ---------------HHccCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 0123 5888899999888877777665543
No 128
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=55.96 E-value=3.3e+02 Score=32.69 Aligned_cols=144 Identities=13% Similarity=0.164 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHH-HHHHHHHHHHHHhCCCccch--------------hhHH
Q psy14676 1235 STLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIA-QLTLTLLTSIAKIQPNALVE--------------PAAA 1299 (1827)
Q Consensus 1235 ~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~-~~al~~L~~l~~~~~~~~~~--------------~~i~ 1299 (1827)
..++.++.++..+...+..+...-+...|.||........- +....|+...+...|..... +.-+
T Consensus 190 eLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~Kev 269 (403)
T 3fga_B 190 ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEV 269 (403)
T ss_dssp HHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHH
T ss_pred HHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHH
Confidence 35667777777777667776666667777788776655544 44555666666666643221 0111
Q ss_pred hhhhhcccc---cCCC-c---hhhHHHHHHHhcCCCCHhHHHHHHHHHhh-----hhhhhhhhhHHHHHHhhhc------
Q psy14676 1300 SILPQIGRH---TDLT-S---VADLKQVILNAFTPTSEEVKSAASYTLGS-----IAVGNLQQYVPFVLKEIEN------ 1361 (1827)
Q Consensus 1300 ~~lgeiG~~---~~~~-~---~~~l~~~~l~~~~~~s~eVr~aAa~aLG~-----i~~~~l~~~LP~Il~~i~~------ 1361 (1827)
..++|++.- +++. + ...++..+..|+.+++-.|-+.|.+-..+ +...|....+|.|+..+..
T Consensus 270 lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HW 349 (403)
T 3fga_B 270 MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHW 349 (403)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHcc
Confidence 223444322 2211 1 23577888899999999999988766554 3345666788887776633
Q ss_pred CchhhHHHHHHHHHHHh
Q psy14676 1362 QPKRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1362 ~~~~q~~~l~aL~Eii~ 1378 (1827)
+...+.+...+++.+..
T Consensus 350 n~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 350 NKTIHGLIYNALKLFME 366 (403)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 23355566677766643
No 129
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=55.69 E-value=2.6e+02 Score=31.43 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL 114 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~ 114 (1827)
..+++--|.++- ...+ ..+.+.|.-.-+++-+--| ...+++++-+++.-.+++..||+-.+.-+...+.. ..++
T Consensus 14 ~~~v~~lln~A~-~~~~-~~kl~~L~qa~el~~~~dp---~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l 87 (257)
T 3gs3_A 14 RAKVVDWCNELV-IASP-STKCELLAKVQETVLGSCA---ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVEL 87 (257)
T ss_dssp HHHHHHHHHHHT-TCCH-HHHHHHHHHHHHHHTTTTG---GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGG
T ss_pred HHHHHHHHHHhh-hcCc-HHHHHHHHHHHHHHHccCH---hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHH
Confidence 444444444432 2223 4565555555554433222 36788999999976788899999766655554432 2335
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhh----------HH---hHHHHHHHHHhhcccCchHHHHHHHH
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRF----------AE---HIERVMPLILKYSREEDDELREFCLQ 181 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~----------~p---~l~~i~p~l~~~~~~~~delRe~al~ 181 (1827)
....++.+..-|. ++++.+.+.+++|.+.+.+.+-..+ .. .+..+-..++.......+.+|-.|+-
T Consensus 88 ~~~~l~~L~~Ll~-d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK 166 (257)
T 3gs3_A 88 LPHVINVVSMLLR-DNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK 166 (257)
T ss_dssp HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence 5566666665555 5678999999999999987543221 11 12223333344444556666655555
Q ss_pred HHHHHH
Q psy14676 182 ACEAFV 187 (1827)
Q Consensus 182 ale~~~ 187 (1827)
.+|.++
T Consensus 167 F~e~vI 172 (257)
T 3gs3_A 167 FLEGVV 172 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=41.66 E-value=1e+02 Score=32.27 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH-----HHHHHHHH
Q psy14676 49 QEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY-----TKLIDFLL 123 (1827)
Q Consensus 49 ~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~-----~~l~~~ll 123 (1827)
++|+..-.+.+|.+.. .+ ..-...+.++...|.+.++.|+-+|+..|..++..|+..+- ..+++.++
T Consensus 30 ~~Dw~~~leicD~I~~-----~~---~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~ 101 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGS-----TP---NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR 101 (163)
T ss_dssp SCCHHHHHHHHHHHHH-----SS---SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC-----CC---ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 4577666665555543 11 12236777888889999999999999999999999987644 33555555
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHhc
Q psy14676 124 EGLTTNKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 124 ~~L~~~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
..+....++.|++.+++.+...+...+
T Consensus 102 ~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 102 AVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 544433557788888887777776544
No 131
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=41.47 E-value=12 Score=30.52 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcccCCCCChhHHHHHHHHhCCchHHHHHHHHhc
Q psy14676 1724 KRSAMRAVAALLTIQDADKNPALNDFVATIKNSPELQTIFDSMQK 1768 (1827)
Q Consensus 1724 ~~s~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1768 (1827)
.|+++|.++.=+++ +.+.-..+..+++.|+...+|++.|+.+.+
T Consensus 3 SrsViRSvikSS~l-~~~hK~~ml~LL~dikg~~dL~eF~qMl~~ 46 (56)
T 1oks_A 3 SRSVIRSIIKSSRL-EEDRKRYLMTLLDDIKGANDLAKFHQMLVK 46 (56)
T ss_dssp CHHHHHHHHHHSCS-CHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccc-chHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 47788888888777 445567789999999999999998876653
No 132
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=40.04 E-value=2.6e+02 Score=34.41 Aligned_cols=174 Identities=12% Similarity=0.073 Sum_probs=97.9
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhh-hH-HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhccCCCCchhH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAA-NV-CRRITGKLSTAIEKQ--EDVSVQLEALDILSDLLSRFGALLPSFHF 78 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~-~v-~~~L~P~Ll~~l~~~--~~~~v~~~al~iL~~l~~~~~~~l~~~~~ 78 (1827)
+-||.+-.++-.+|+.+++.-|........ .+ ...+ |++++.++.. .|+++. +-+..|.+.++..-..+..+..
T Consensus 283 s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~-edl~~L~e~L~~~~~~ltsfDe 360 (480)
T 1ho8_A 283 TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELR-QDISNLKEILENEYQELTSFDE 360 (480)
T ss_dssp CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHH-HHHHHHHHHHHHHHHTCCHHHH
T ss_pred hccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHH-HHHHHHHHHHHHHHHhcccHHH
Confidence 346777777777788877765533211111 11 1223 4566666432 266664 5566666666666666655433
Q ss_pred HHHHHHhhhcCC-C---C-HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC---------CCCHHHHHHHHHHHHH
Q psy14676 79 VILTALLPQLSS-P---R-QAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT---------NKSTSTNRTYIQCFAA 144 (1827)
Q Consensus 79 ~il~~ll~~L~~-~---~-~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~---------~~~~~~r~~ai~~l~~ 144 (1827)
-.-+..-..|.- | + .--|+.|. .+.++.+ +++..|++-|.+ +.++.+..-||.=+|.
T Consensus 361 Y~~El~sG~L~WSP~H~se~FW~ENa~--------kf~e~~~-~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Dige 431 (480)
T 1ho8_A 361 YVAELDSKLLCWSPPHVDNGFWSDNID--------EFKKDNY-KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITH 431 (480)
T ss_dssp HHHHHHHTCCCCCGGGGCHHHHHHHSG--------GGSSGGG-HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccCCCccchhHHHHHHH--------HHHhcch-HHHHHHHHHHhhhccccccccCCCcceEEeecccHHH
Confidence 333333344542 1 1 22333221 1122222 234455555532 2346677888899999
Q ss_pred HHHHhchh--hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 145 ICRQAGHR--FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 145 la~~~~~~--~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
++++.|.. +...+ ..-..+++.++.++++||..|+.|+..|+.
T Consensus 432 fvr~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 432 VVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99998742 22222 245667778888999999999998877764
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.17 E-value=2.2e+02 Score=29.92 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=50.9
Q ss_pred hhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhh----cCCCHHHHHHHHHHHH
Q psy14676 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKA----ADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1085 ~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~----~D~d~eVre~Ai~alg 1160 (1827)
..+..|.+.++..++.+..-||..+..+++.-.+.. +..-.-..|++.+. ..+.. ...+.+||+.++..+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~F-h~evas~~Fl~eL~----kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF-HNEVGKFRFLNELI----KVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH-HHHHTSHHHHHHHH----HHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH-HHHHhhHHHHHHHH----HHhccccCCCCCCHHHHHHHHHHHH
Confidence 355667777788889999999999999888632100 00000113344433 33321 2357899999999999
Q ss_pred HHHHHhhh
Q psy14676 1161 QIICNLGD 1168 (1827)
Q Consensus 1161 ~l~~~~g~ 1168 (1827)
.+...++.
T Consensus 125 ~W~~~f~~ 132 (171)
T 1juq_A 125 SWTMALPE 132 (171)
T ss_dssp HHHHHCTT
T ss_pred HHHHHcCC
Confidence 99988765
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=38.95 E-value=1.7e+02 Score=29.61 Aligned_cols=78 Identities=9% Similarity=0.124 Sum_probs=45.3
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE 158 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~ 158 (1827)
..+.++...|.+.++.|+-+|..-+..++..|+...-..+ .+ .. +++
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ev--------as----------------------~~---Fl~ 88 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEV--------CS----------------------RD---FAS 88 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH--------SS----------------------HH---HHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHH--------hh----------------------HH---HHH
Confidence 5556666666666666666666666666666655432111 00 01 122
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCc
Q psy14676 159 RVMPLILKYSREEDDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 159 ~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e 193 (1827)
++. ..++..+++||+.++..+..|....+.+
T Consensus 89 el~----~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 89 EVS----NVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHH----HHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH----HHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 222 2222357899999999999999877653
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=38.70 E-value=3.5e+02 Score=28.11 Aligned_cols=77 Identities=8% Similarity=0.090 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH--HHHHHHHhhccc-CchHHHHHHHHHHHHHHHhCCC
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE--RVMPLILKYSRE-EDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~--~i~p~l~~~~~~-~~delRe~al~ale~~~~~~p~ 192 (1827)
...+..+..+|.. .++.++-.++..+..+...+|..|...+. +++.-+.+.++. .+++||+.+++.+..|...++.
T Consensus 51 keA~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445666667754 46788899999999999999998875442 344444444443 5789999999999999998775
Q ss_pred c
Q psy14676 193 E 193 (1827)
Q Consensus 193 e 193 (1827)
+
T Consensus 130 ~ 130 (163)
T 1x5b_A 130 D 130 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=38.43 E-value=72 Score=32.48 Aligned_cols=90 Identities=7% Similarity=-0.027 Sum_probs=60.6
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
.+-.|.+.+++.++....-|+.+|..+..+++..|+...-. ..|+..++ ..+....+.|+...+..+..+..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas----~~Fl~el~----~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS----RDFASEVS----NVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS----HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh----HHHHHHHH----HHhccCCHHHHHHHHHHHHHHHH
Confidence 34566777888888888889999999999998877643111 12344443 33334568999999999999998
Q ss_pred HhccCCCCCCCCcchhHHHHHHHH
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDIYQCT 1138 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l~~~l 1138 (1827)
..+. ..-.+++.++|..+
T Consensus 115 ~f~~------~~~l~~i~~~Y~~L 132 (140)
T 3ldz_A 115 EFKN------DPQLSLISAMIKNL 132 (140)
T ss_dssp HHTT------CGGGTHHHHHHHHH
T ss_pred HhCC------CCCchHHHHHHHHH
Confidence 7752 11224566666644
No 137
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=37.65 E-value=48 Score=33.76 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc
Q psy14676 343 QVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL 381 (1827)
Q Consensus 343 ~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l 381 (1827)
....|++.|.+.|+++++.+..-|+.+|..|+...+..+
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f 84 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF 84 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH
Confidence 358899999999999999999999999999998776544
No 138
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=37.51 E-value=1.6e+02 Score=35.31 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHH-HHH
Q psy14676 4 DKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFV-ILT 82 (1827)
Q Consensus 4 ~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~-il~ 82 (1827)
.+.--||---..|..|-....... +-+++.+-..+...+...+...--.+.|.+||.+...|..-+...|.. +..
T Consensus 186 eDpRERd~LktiLhrIY~Kf~~~R----~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~ 261 (392)
T 2jak_A 186 EDPRERDFLKTTLHRIYGKFLGLR----AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLK 261 (392)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 344466666666666666665432 234555555556666433333344699999999999998666665655 567
Q ss_pred HHhhhcCCCCH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-chhhHHhHHHH
Q psy14676 83 ALLPQLSSPRQ-AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA-GHRFAEHIERV 160 (1827)
Q Consensus 83 ~ll~~L~~~~~-~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~-~~~~~p~l~~i 160 (1827)
.++|....+.. .--..=..|+..+++- .+.+...++..++..--. .+....-.-+.-+..+.+.. +..|.+....+
T Consensus 262 vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~L~~~vi~~LLk~WP~-tns~KevlFL~eleeiLe~~~~~~f~~i~~~l 339 (392)
T 2jak_A 262 VLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLTEPVVMALLKYWPK-THSPKEVMFLNELEEILDVIEPSEFVKIMEPL 339 (392)
T ss_dssp TTGGGGTSGGGGGTHHHHHHHHHHHHHH-CGGGHHHHHHHHHHSSCS-SCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HhHhhccCCcHHHhHHHHHHHHHHHHhc-CchhHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 77887765442 2222334677776654 233444555555543211 11222344556666777665 46678888888
Q ss_pred HHHHHhhcccCchHHHHHHHHHH
Q psy14676 161 MPLILKYSREEDDELREFCLQAC 183 (1827)
Q Consensus 161 ~p~l~~~~~~~~delRe~al~al 183 (1827)
+..+-+.++.+.-.|-|.|+..+
T Consensus 340 F~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 340 FRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHcCCcHHHHHHHHHHh
Confidence 88888888888888888887654
No 139
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=36.74 E-value=32 Score=42.25 Aligned_cols=73 Identities=10% Similarity=0.123 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHhhccCCCCch-hHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy14676 37 RITGKLSTAIEK---------QEDVSVQLEALDILSDLLSRFGALLPSF-HFVILTALLPQLSSPRQAVRKRTIVALSHL 106 (1827)
Q Consensus 37 ~L~P~Ll~~l~~---------~~~~~v~~~al~iL~~l~~~~~~~l~~~-~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l 106 (1827)
+++-+|.+.+++ +.|+.+..-||.=+|+++.+.+.--.-. .-..-..+++.|+|+++.||+.|..|+..+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 455666666642 2368888889999999998876421100 012466788899999999999999999987
Q ss_pred HHh
Q psy14676 107 VMS 109 (1827)
Q Consensus 107 ~~~ 109 (1827)
..+
T Consensus 475 m~~ 477 (480)
T 1ho8_A 475 IGY 477 (480)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 140
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=34.17 E-value=1.1e+03 Score=32.63 Aligned_cols=71 Identities=4% Similarity=-0.082 Sum_probs=53.2
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcccccc
Q psy14676 863 GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI 936 (1827)
Q Consensus 863 ~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l 936 (1827)
.+..+.++.++.-...++..+...+.. -|=.+|+..++..+......--++|+..+..++..++..+.||-
T Consensus 407 ~Ll~S~~~~v~~Fg~~lY~~lF~~fd~---~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 407 TLFHSQDQRIILFGSLLYKYAFKFFDT---YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH
Confidence 455577889999999999999998742 34566888888776655544456788888888888888777753
No 141
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.33 E-value=3.5e+02 Score=27.69 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH--HHHHHHHHhhcc------cCchHHHHHHHHHHHHHHHh
Q psy14676 118 LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI--ERVMPLILKYSR------EEDDELREFCLQACEAFVQR 189 (1827)
Q Consensus 118 l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l--~~i~p~l~~~~~------~~~delRe~al~ale~~~~~ 189 (1827)
.+..+..+|.. .++.+.-.++..+.++...+|.+|...+ .+++.-+.+.++ ..+.+||+.++..+..|...
T Consensus 49 a~ral~krl~~-~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 44555566653 5678888888999999999998885544 234444555543 25789999999999999998
Q ss_pred CCCc
Q psy14676 190 CPKE 193 (1827)
Q Consensus 190 ~p~e 193 (1827)
++.+
T Consensus 128 f~~~ 131 (149)
T 3g2s_A 128 LPEE 131 (149)
T ss_dssp CTTC
T ss_pred hCCC
Confidence 8763
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=32.72 E-value=4.1e+02 Score=27.04 Aligned_cols=75 Identities=8% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH--HHHHHHHHhhccc------CchHHHHHHHHHHHHHHHh
Q psy14676 118 LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI--ERVMPLILKYSRE------EDDELREFCLQACEAFVQR 189 (1827)
Q Consensus 118 l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l--~~i~p~l~~~~~~------~~delRe~al~ale~~~~~ 189 (1827)
.+..+..+|.. .++.+...++..+.++...+|.+|...+ .+++.-+.+.++. .+.++|+.++..+..|...
T Consensus 39 a~rai~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555556653 5677888888888888888888886655 3566666666653 3789999999999999998
Q ss_pred CCCc
Q psy14676 190 CPKE 193 (1827)
Q Consensus 190 ~p~e 193 (1827)
.+.+
T Consensus 118 f~~~ 121 (148)
T 1mhq_A 118 FPED 121 (148)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 7663
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=29.73 E-value=3.9e+02 Score=27.28 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=58.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH-----HHHHHHHHHhccC-----CCCHHHHHHHHHHHHHHHH
Q psy14676 78 FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY-----TKLIDFLLEGLTT-----NKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 78 ~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~-----~~l~~~ll~~L~~-----~~~~~~r~~ai~~l~~la~ 147 (1827)
...+.++...|.+.++.|.-+|...|..++..|+..+- ..+++.|+..+.. ..+..|+..+++.+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 36777888889999999999999999999999987643 2355666655542 2467899999999999998
Q ss_pred Hhch
Q psy14676 148 QAGH 151 (1827)
Q Consensus 148 ~~~~ 151 (1827)
..+.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7654
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=29.58 E-value=3.6e+02 Score=31.50 Aligned_cols=109 Identities=15% Similarity=0.008 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhc-cC-CCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH--H
Q psy14676 40 GKLSTAIEKQEDVSVQLEALDILSDLLSRF-GA-LLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL--Y 115 (1827)
Q Consensus 40 P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~-~~-~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~--~ 115 (1827)
..|+..+.. .+.+++.-+|.+|.+++.+- |- .+. .|+..+..+...+.+....|-+.|..-|-.++++.+... +
T Consensus 163 ~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~v~Gm~gvv-s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv 240 (339)
T 3dad_A 163 SCLIRVGAA-ADHNYQSYILRALGQLMLFVDGMLGVV-AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLF 240 (339)
T ss_dssp HHHHHHHTT-SCHHHHHHHHHHHHHHTTSHHHHHHHH-HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHh-cChHHHHHHHHHHHHHHhccccccchh-CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHH
Confidence 445555543 37888999999999988751 10 011 167788888888888889999999999999999875332 1
Q ss_pred HHH------------HHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHhc
Q psy14676 116 TKL------------IDFLLEGLT--TNKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 116 ~~l------------~~~ll~~L~--~~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
..- +..++..|+ +..+.+++..++..+.++...++
T Consensus 241 ~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 241 IRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 111 346667775 24578888889999999988877
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.07 E-value=4.8e+02 Score=28.55 Aligned_cols=94 Identities=11% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHH
Q psy14676 49 QEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLL 123 (1827)
Q Consensus 49 ~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll 123 (1827)
++|+..-.+.+|.+. . .+ . .-.+.+.++..-|++.++.|+-+|+..|..++..++..... .+++.|.
T Consensus 23 ~~dw~~ileicD~I~----~-~~-~--~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~ 94 (226)
T 3zyq_A 23 ETDWESILQICDLIR----Q-GD-T--QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELK 94 (226)
T ss_dssp SCCHHHHHHHHHHHH----T-TS-S--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHh----C-CC-c--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHH
Confidence 347666555555554 1 11 1 22467888888899999999999999999999999876432 2334443
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHhc
Q psy14676 124 EGLTTNKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 124 ~~L~~~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
..+.......|++.+++.+...+....
T Consensus 95 ~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 95 DLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 333334557788888888888876554
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=28.56 E-value=3.1e+02 Score=28.72 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH-----HHHHHHHH
Q psy14676 49 QEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY-----TKLIDFLL 123 (1827)
Q Consensus 49 ~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~-----~~l~~~ll 123 (1827)
++|+..-.+.+|.+..- + .--...+.++...|++.++.|+-+|+..|..++..|+..+- ..+++.|+
T Consensus 28 ~~Dw~~ileicD~I~~~-----~---~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKE-----L---EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp SCCHHHHHHHHHHHHHS-----T---THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcC-----C---ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 45776666655555432 1 11235678888889999999999999999999999987543 23455555
Q ss_pred HhccC-----CCCHHHHHHHHHHHHHHHHHhch
Q psy14676 124 EGLTT-----NKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 124 ~~L~~-----~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
..+.. .....||+.+++.+...+...+.
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 55532 24578999999999998887553
No 147
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=25.69 E-value=3.2e+02 Score=27.91 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH-----HHHHHHHH
Q psy14676 49 QEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY-----TKLIDFLL 123 (1827)
Q Consensus 49 ~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~-----~~l~~~ll 123 (1827)
++|+..-.+.+|.+..- + ..-...+.++...|++.++.|.-+|...|..++..|+..+- ..+++.|+
T Consensus 16 ~~dw~~~leicD~I~~~-----~---~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 16 EQDWSAIQNFCEQVNTD-----P---NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp SCCHHHHHHHHHHHHHS-----S---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcC-----C---ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 34666655555555431 1 11235677888889999999999999999999999987643 33556666
Q ss_pred HhccC-----CCCHHHHHHHHHHHHHHHHHhch
Q psy14676 124 EGLTT-----NKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 124 ~~L~~-----~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
..+.. .....|++.++..+...+...+.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 55542 24678999999999988876543
No 148
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=25.64 E-value=2.1e+02 Score=29.04 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccc
Q psy14676 141 CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEIT 195 (1827)
Q Consensus 141 ~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~ 195 (1827)
.+..||+.....-...+.+||+++++-+++....+.-.||..|+.++..-++.|.
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~ 85 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFR 85 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHH
Confidence 4455555443322223578999999999988888888899988888765555443
No 149
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.84 E-value=5.5e+02 Score=26.33 Aligned_cols=78 Identities=9% Similarity=0.146 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH--HHHHH-HHhhcc---cCchHHHHHHHHHHHHHHH
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE--RVMPL-ILKYSR---EEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~--~i~p~-l~~~~~---~~~delRe~al~ale~~~~ 188 (1827)
-...+..+..+|+...++.++-.++..+.++...+|.+|...+. +++.- +.+.+. ..+.+||+.+++.+..|..
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 34456677777765456788899999999999999999876553 35543 444443 2356899999999999998
Q ss_pred hCCC
Q psy14676 189 RCPK 192 (1827)
Q Consensus 189 ~~p~ 192 (1827)
.++.
T Consensus 131 ~f~~ 134 (157)
T 1elk_A 131 AFRS 134 (157)
T ss_dssp HHTT
T ss_pred HcCC
Confidence 6643
No 150
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=24.03 E-value=1e+03 Score=28.84 Aligned_cols=247 Identities=13% Similarity=0.147 Sum_probs=122.8
Q ss_pred CCChhhHHHHHHHHHHHHHh--c-cccchhhhhh-hHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcccccccccccc
Q psy14676 867 NKSTSTNRTYIQCFAAICRQ--A-GHRFAEHIER-VMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRH 942 (1827)
Q Consensus 867 ~~~~~vr~~~l~~l~~L~~~--~-~~~~~~yl~~-ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~ 942 (1827)
+++.+.-..+-..|..+.++ + +.....|++. .+-.++..+..+|+..|+.....+..+-..+ -..++++...+.+
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf-~~~R~~Irk~i~n 206 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF-LGLRAYIRKQINN 206 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC-TTTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44555555566666555543 2 2334556666 6777778887888888888766665544433 1233333322211
Q ss_pred ---------CCcchhhhhHHHH---HhhcCCC-hHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhh
Q psy14676 943 ---------TDLTSVADLKQVI---LNAFTPT-SEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHC 1009 (1827)
Q Consensus 943 ---------~~~s~~~~L~~~l---~~~~~~~-~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l 1009 (1827)
....++.+|..++ ++.|..+ .++-+.--...+=.. + ..+.+..|.+++
T Consensus 207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPL-----h------k~~~l~~y~~qL-------- 267 (449)
T 2npp_B 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPL-----H------KVKSLSVYHPQL-------- 267 (449)
T ss_dssp HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGG-----G------GSSCGGGTHHHH--------
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH-----H------ccchhHHhHHHH--------
Confidence 0112333333332 2222211 111111000000000 0 011122333333
Q ss_pred hccccchhhHHHHHHhhhcccCCCCchHHHHHHhc-cCC-hhhHH-HHHHHHH-HHHHhccccccccccchhhhhhhhhh
Q psy14676 1010 ECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLK-SNS-ALMRT-THQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYF 1085 (1827)
Q Consensus 1010 ~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~-s~~-~~~R~-~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~ 1085 (1827)
..|+-.+....|.-..+.+...++ .+. ...|+ ..+.-+. .+....+..|+.. +.+
T Consensus 268 -----------~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i----------~~~ 326 (449)
T 2npp_B 268 -----------AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI----------MEP 326 (449)
T ss_dssp -----------HHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH----------HHH
T ss_pred -----------HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH----------HHH
Confidence 344444555554444445555553 221 22333 3333444 2222333344433 677
Q ss_pred hhHHHHHhhcCCchhhHHHHHHHHH--HHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVGDNFYKITAEALLVLQ--QFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKA---ADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1086 Lip~l~~~l~D~~~~V~~eAl~~l~--~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~---~D~d~eVre~Ai~alg 1160 (1827)
+...+-.|+..++.+|+..|+.... .++..+. .+...+++.+...+.. +.-++.||..|..++.
T Consensus 327 lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~-----------~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk 395 (449)
T 2npp_B 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS-----------DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALK 395 (449)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH-----------TTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH-----------hchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888889999999999999887542 3343332 2345566666666532 2337889999999998
Q ss_pred HHHHH
Q psy14676 1161 QIICN 1165 (1827)
Q Consensus 1161 ~l~~~ 1165 (1827)
.+.+.
T Consensus 396 ~l~e~ 400 (449)
T 2npp_B 396 LFMEM 400 (449)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 76653
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.48 E-value=3.2e+02 Score=28.19 Aligned_cols=75 Identities=9% Similarity=0.159 Sum_probs=55.3
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhh--hHHH-HHHhhcc---cchHHHHHHHHHHHHHHhhC
Q psy14676 855 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER--VMPL-ILKYSRE---EDDELREFCLQACEAFVQRC 928 (1827)
Q Consensus 855 ~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~--ilP~-ll~~l~d---~~~~vre~al~Ale~~v~~~ 928 (1827)
..+..+...+..++++.++-.++.++..+.+.||..|...+.. .+.- +++.+.. ....||+-+++.+..|...+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 3444455566655778999999999999999999999985543 5554 4555532 34689999999999998765
Q ss_pred C
Q psy14676 929 P 929 (1827)
Q Consensus 929 ~ 929 (1827)
+
T Consensus 133 ~ 133 (157)
T 1elk_A 133 R 133 (157)
T ss_dssp T
T ss_pred C
Confidence 4
No 152
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.32 E-value=6.2e+02 Score=25.60 Aligned_cols=94 Identities=11% Similarity=0.139 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH-HHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcc
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER-VMPLILKYSREEDDELREFCLQACEAFVQRCPKEI 194 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~-i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~ 194 (1827)
..++..+-+.+.+ ..+..+-..+..+.+|++..+..|.+++.. +.+.+......-+++.|..-..-+..|-.+.|...
T Consensus 42 ~~Iv~~i~~~i~k-~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~~ 120 (144)
T 1sz9_A 42 QYFVDAIESRIEK-CMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGL 120 (144)
T ss_dssp HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCSS
T ss_pred HHHHHHHHHHhcc-CCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCCC
Confidence 3344444444443 346788889999999999998777766654 34444444444578889888888888887755432
Q ss_pred ccchHHHHHHHHHHhc
Q psy14676 195 TPHIQSITELCLTYIT 210 (1827)
Q Consensus 195 ~p~l~~ii~~ll~~l~ 210 (1827)
.-|=+..+..+-+.+.
T Consensus 121 ~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 121 PLFEGSALEKIEQFLI 136 (144)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2244445555544443
No 153
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=22.06 E-value=4.4e+02 Score=30.37 Aligned_cols=110 Identities=9% Similarity=0.086 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc-c-CCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh--
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRF-G-ALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ-- 113 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~-~-~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~-- 113 (1827)
++..++..+.+...+..+.-++.++..++..- + ..+..+...+++.+...+.+++..+|-.+...+-+++......
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~ 227 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN 227 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence 33344444443335555656666665554432 1 1222345678888888888889999999999888888865321
Q ss_pred --HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy14676 114 --LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 114 --~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~ 147 (1827)
.-..++..+...+....+.+..-.++.++|.+..
T Consensus 228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 1122223233333344566777777788888874
No 154
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.99 E-value=5.4e+02 Score=25.30 Aligned_cols=103 Identities=8% Similarity=0.088 Sum_probs=67.2
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc----hhh
Q psy14676 78 FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG----HRF 153 (1827)
Q Consensus 78 ~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~----~~~ 153 (1827)
.+-+...++.|+.....++..+.-|+.+.- .-..+++.+.+.+.+ ..+..|-..+..+..++.... ..|
T Consensus 7 e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~------~a~~Iv~~i~~~l~~-~~~~~KL~~LYL~ndIl~ns~~~~~~~f 79 (132)
T 4flb_A 7 ESSLDRKFQSVTNTMESIQGLSSWCIENKK------HHSTIVYHWMKWLRR-SAYPHRLNLFYLANDVIQNCKRKNAIIF 79 (132)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHTGG------GHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTTTCTHH
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHhcccChHHH
Confidence 355666777887777777777766666521 223445555555544 245678889999999998763 456
Q ss_pred HHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHh
Q psy14676 154 AEHIERVMPLILKYSREEDDELREFCLQACEAFVQR 189 (1827)
Q Consensus 154 ~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~ 189 (1827)
.+.+..++|-++..+. +++.|.....-+..|-.+
T Consensus 80 ~~~f~~~l~~~~~~~~--~~~~~~kl~~ll~iW~~r 113 (132)
T 4flb_A 80 RESFADVLPEAAALVK--DPSVSKSVERIFKIWEDR 113 (132)
T ss_dssp HHHHHTTHHHHHHTTC--STTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhccC
Confidence 6666667776666553 455676666777778764
No 155
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=20.35 E-value=2e+02 Score=31.39 Aligned_cols=84 Identities=8% Similarity=0.000 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhH
Q psy14676 1413 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDS 1492 (1827)
Q Consensus 1413 R~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~ 1492 (1827)
-+..|.++|++..-+|+.+.+.+.+...+++..+|.+++.+. +... ..-++
T Consensus 107 ~D~~a~~~~~~~~~~~~~~~~~i~~W~~s~~~w~rR~ai~~~---l~~~-~~~~~------------------------- 157 (220)
T 2b6c_A 107 VDAWRKFFGSWVALHLTELPTIFALFYGAENFWNRRVALNLQ---LMLK-EKTNQ------------------------- 157 (220)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHHTTCSSHHHHHHHHHTT---TTCG-GGCCH-------------------------
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHcCCCHHHHHHHHHHH---HHHH-HCCCH-------------------------
Confidence 344456789998889998999999999999999887776544 2211 11111
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhh
Q psy14676 1493 ERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKV 1526 (1827)
Q Consensus 1493 ~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l 1526 (1827)
..+++.+-.++.|++..|+.+.+=+|..+.++.
T Consensus 158 -~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 158 -DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp -HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence 234566667899999999999999999988763
Done!