RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14676
(1827 letters)
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 442 bits (1137), Expect = e-131
Identities = 426/1297 (32%), Positives = 627/1297 (48%), Gaps = 135/1297 (10%)
Query: 547 LALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 606
++ L E MTSSDKDFRFMATNDLM+ELQKDSIKLDDDSERKVVKM+L+LLEDKNGEVQNL
Sbjct: 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 67
Query: 607 AVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 666
AVKCLGPL + + + L + L ++ ++ L T++ + +
Sbjct: 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL-----RDISSIGLKTVIG-ELPPAS 121
Query: 667 YPSAISTEMLNKVTVELA-PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQV 725
SA++ + K+T L + + D+ + L ++ + Q LV SIL +
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-NFHPSILTCL 180
Query: 726 LQIAKSP--LLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHS 783
L SP ++ + ++ S L LL+ L + +
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL-IEHLLSELSKN--DSMSTTRTYIQC 237
Query: 784 LAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSH 843
+A + ++ +K + D+ + I A V C ++
Sbjct: 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY------ 291
Query: 844 LVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLIL 903
+ +I+ L+ LT + + + + + ++
Sbjct: 292 -------PHVSTIINICLKYLTYDPNYNYD-----DEDEDENAMDADGGDDDDQGSDDEY 339
Query: 904 KYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTS 963
+ ++R + +A V + + +++ +++ F
Sbjct: 340 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS------------PALISRFKERE 387
Query: 964 EEVKSAASYTLGSIAEIISWQS----------TSTSGVAQLQQFVPAIWAQLFLHCECQE 1013
E VK+ + S+ + + + LQ VP I L + +
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS 447
Query: 1014 EGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHN 1073
TR L +L + P L + + + S+ + + N
Sbjct: 448 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507
Query: 1074 EETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSD 1133
+ L+ PV+A VGD FYKIT+EALLV QQ VKVIRPL PSS+D P+ D
Sbjct: 508 HSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD 567
Query: 1134 IYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLT 1193
++ CT+ RLKAADIDQEVKERAISCMGQIICNLGD L S+LP L I L+RL+NEITRLT
Sbjct: 568 LFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 627
Query: 1194 TVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIST 1253
TVKALT IA SPL+IDLRP+L +G+PIL SFLRKNQRALKL TL LD L+ NY +++
Sbjct: 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 687
Query: 1254 EMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQI-------- 1305
M++ V EL PL+SESD+H++Q+ ++ LT++AK+ P+ + + SIL ++
Sbjct: 688 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS-SLSKISGSILNELIGLVRSPL 746
Query: 1306 -----------------GRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNL 1348
T+ DL +++ S + SY + V L
Sbjct: 747 LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAAL 806
Query: 1349 QQYVPFVLKEIENQPKRQYLLLHSLKEI--ISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1406
+ P + Q + S I ++ S G + + +
Sbjct: 807 TRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFS 866
Query: 1407 CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSD 1466
E ++ + LG +++ + LP + + + S
Sbjct: 867 SPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP----------------------- 903
Query: 1467 KDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKV 1526
+++ + L + S+ + +LL+ E +N+ +CLG L
Sbjct: 904 -KRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT--- 959
Query: 1527 KEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS----------------VVYCLGDR 1570
ET++ L ++S R +K IS + L D
Sbjct: 960 -LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED- 1017
Query: 1571 NSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVI----IIKTLIREVEMGPFKHTV 1626
N++ L ++ P + + +LP + + K LIREVEMGPFKHTV
Sbjct: 1018 -PDLNVRRVALVTFNSAAHNKPSLI-RDLLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1075
Query: 1627 DDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRDHYDIKMLTYLMLARLAQMTP 1686
DDGLDIRKAAFECMYTLLD+CLDR+D+FEFLNH+E GL+DHYDIKMLT+LML RL+ + P
Sbjct: 1076 DDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCP 1135
Query: 1687 AALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQDADKNPAL 1746
+A+LQRL+R+VEPLR T T KVKANSVKQE+EKQDELKRSAMRAVAALLTI +A+K+P +
Sbjct: 1136 SAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLM 1195
Query: 1747 NDFVATIKNSPELQTIFDSMQKDSSLSNQQDPHMMDM 1783
++F + I ++PEL IF+S+QKDSS +N + MD
Sbjct: 1196 SEFQSQISSNPELAAIFESIQKDSSSTNLE---SMDT 1229
Score = 405 bits (1041), Expect = e-118
Identities = 390/1109 (35%), Positives = 577/1109 (52%), Gaps = 154/1109 (13%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S +ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E +
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD-------ADG 327
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQ-SWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEE 418
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLN--------------------- 485
Query: 419 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-RDLIGDMYRLVSPPLIARFKER 477
D S ++ A CL I+ + + + PP++A +
Sbjct: 486 --------------DKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 531
Query: 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLRE 537
+ S+ L+K R + D ++ + + + + +++E
Sbjct: 532 FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQ----EVKE 587
Query: 538 KSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE 597
++I + L + + S DL + LQ +L ++ R
Sbjct: 588 RAISCMGQIICNLGDNLGS-----------DLPNTLQIFLERLKNEITRL---------- 626
Query: 598 DKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTL 657
KALT IA SPL+IDLRP+L +G+PIL SFLRKNQRALKL TL
Sbjct: 627 ---------------TTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTL 671
Query: 658 LLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 717
LD L+ NY +++ M++ V EL PL+SESD+H++Q+ ++ LT++AK+ P+ +
Sbjct: 672 SALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS-SLSKI 730
Query: 718 AASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTG--TA 775
+ SIL +++ + +SPLLQG AL++ML+FF++LV+ L + +LL ML PV +
Sbjct: 731 SGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTAL 790
Query: 776 LHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVAL------SHLV 829
HKQ+++S+AKCVAAL +E VV +F++++K ++ + L H+
Sbjct: 791 THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID 850
Query: 830 MSCNLQLTIVALSHLVMSCNL----------QLYTKLIDFLLEGLTTNKSTSTNRTYIQC 879
+S L+L V L + + L + ++ R Y+
Sbjct: 851 LSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLL 910
Query: 880 FA---AICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI 936
+ I + ++E + L+LK+ ++ R + P+ + P +
Sbjct: 911 HSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRL 970
Query: 937 QSIGRHTD----LTSVADLKQVI------------------LNAFTPTSEEVKSAASYTL 974
+ + V +K I L V+ A T
Sbjct: 971 KGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF 1030
Query: 975 GSIAEIISWQSTSTSGVAQLQQFVPAIWAQL--------------FLHCECQEEGTRNVV 1020
S A L +P ++ + F H R
Sbjct: 1031 NSAAHNKPSLIRD-----LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAA 1085
Query: 1021 AECLGKL-----TLIDPSNLLPRLQESLK 1044
EC+ L +D L +++ LK
Sbjct: 1086 FECMYTLLDSCLDRLDIFEFLNHVEDGLK 1114
Score = 81.7 bits (200), Expect = 2e-15
Identities = 157/1223 (12%), Positives = 366/1223 (29%), Gaps = 122/1223 (9%)
Query: 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 313
+D + +V+ A KCL L+ + ++ + K + L
Sbjct: 58 EDKNGEVQNLAVKCLGP-------LVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGL 110
Query: 314 KGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373
K P S + L A+ Q + + + + L ++ ++
Sbjct: 111 KTVIGELPPASSGSALAANVCKKI------TGRLTSAIAKQ---EDVSVQLEALDIMADM 161
Query: 374 VQTLPGCLAPSLPALIPDVTSVAEWDEEE----------GLGGEGGGEGMDTEEEDGEDE 423
+ G L P+++ + L G E E
Sbjct: 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE 221
Query: 424 GEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKS 483
++ S R +C+ AI IG+ + P ++ ++ ++
Sbjct: 222 LSKND--------SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELRE 273
Query: 484 DIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTR 543
A F P ++ V +++ L
Sbjct: 274 YCIQA----------FESFVRRCPKEVYPH----------VSTIINICLKYLTYDPNYNY 313
Query: 544 QDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEV 603
D + D + D DDD KV + + L V
Sbjct: 314 DDEDEDENAMDADGGDD---------DDQGSDDEYSDDDDMSWKVRRAAAKCL----DAV 360
Query: 604 QNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTL 663
+ + L +K ++ S + + D S L++ R ++
Sbjct: 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT-RPVQSWLCDPDAME 419
Query: 664 LVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILP 723
P + + + L + E + Q +LT + + P AL ++P
Sbjct: 420 QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL-TQHIPVLVP 478
Query: 724 QVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHS 783
++ L + +S L+ L + ++ + + ++
Sbjct: 479 GIIF-----SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV---VACVGD 530
Query: 784 LAKCVAALAITVQREALPVVEKFLKELKTNKDD-AHQVTIVALSHL----VMSCNLQLTI 838
+ + A+ V ++ + V+ + + + + L + + I
Sbjct: 531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAI 590
Query: 839 VALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR-FAEHIER 897
+ ++ + L + L + L L K+ T T ++ I +
Sbjct: 591 SCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGE 650
Query: 898 VMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQS--IGRHTDLTSVAD--LKQ 953
+P++ + R+ L+ L A + ++ +T + + L S +D + Q
Sbjct: 651 GVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQ 710
Query: 954 VILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQE 1013
+ ++ T ++ S+ S GSI + S + + L +
Sbjct: 711 MAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT-NN 769
Query: 1014 EGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHN 1073
G +++ G + + + S+ A + V D+ N
Sbjct: 770 LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSR 829
Query: 1074 EETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSD 1133
S L ++ + L + ++ S + +
Sbjct: 830 STDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889
Query: 1134 IYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRN--EITR 1191
Y +++ + ++ S I LK + +LL E TR
Sbjct: 890 EYLPFVLQEITSQPKRQY-LLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTR 948
Query: 1192 LTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 1251
+ L K+ +P L +L + S + + + ++P I
Sbjct: 949 NVVAECLGKLTLI--------DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI 1000
Query: 1252 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDL 1311
+L + + + DL++ ++ L S A +P+ L+ ++LP + T +
Sbjct: 1001 D-PLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS-LIRDLLDTVLPHLYNETKV 1058
Query: 1312 TSVADLKQVILNAFTPT---SEEVKSAASYTLGSIAVG-----NLQQYVPFVLKEIENQP 1363
+++V + F T +++ AA + ++ ++ +++ V +++
Sbjct: 1059 RK-ELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHY 1117
Query: 1364 KRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLH---------CECQEEGTRN 1414
+ L L + + ++ + +L + V + A E Q+E R+
Sbjct: 1118 DIKMLTFLMLVRLSTLCPSAV--LQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRS 1175
Query: 1415 VVAECLGKLTLIDPSNLLPRLQE 1437
+ + L I + P + E
Sbjct: 1176 AM-RAVAALLTIPEAEKSPLMSE 1197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 84.3 bits (208), Expect = 3e-16
Identities = 108/577 (18%), Positives = 177/577 (30%), Gaps = 223/577 (38%)
Query: 1208 IDLRPI-LTDG-------IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLN-- 1257
RP+ L+ G +P SF +Q L + P TE
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPT-ASFFIASQ---------LQEQFNKILPEP--TEGFAAD 51
Query: 1258 ---KVTVEL--------APLVSESDLHIAQLTLTLLTSIAKIQPNAL----VEPAAASIL 1302
EL + LV S + Q L + + + L + AA +L
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPS--KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 1303 PQIGRHTDLTSVADLKQVILNAFT-------PTSEEVKSA--ASYTLGS---IAV----G 1346
+ + T++ K++I N T P ++ SA + G+ +A+ G
Sbjct: 110 QE-----NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 1347 N-------LQQ----YVPFV----------LKE-IENQPKRQYLLLHSLKEIISWQSTST 1384
N L+ Y V L E I + + L I+ W +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPS 223
Query: 1385 S-----------------GVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLID 1427
+ GV QL +V V A+ LG
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYV--------------------VTAKLLG----FT 259
Query: 1428 PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIK 1487
P L L+ + + ++TAV I+ T S + F
Sbjct: 260 PGELRSYLKGATGHSQG-----LVTAV--AIA--ETDSWESF------------------ 292
Query: 1488 LDDDSERKVVKML----LR-------------LLED--KNGEVQN---LAVKCLGPLVNK 1525
S RK + +L +R +LED +N E L++
Sbjct: 293 --FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS--N----- 343
Query: 1526 VKEFQVETIVDALCSNMVSDKEQLRDISSIGLK-----TVIS------VVYCLGDRNSSS 1574
+ + QV+ V+ S++ + K Q+ I L V+S L R + +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGK-QV----EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 1575 NMKIDT---------LAFTHTLLTTHPPAVFHPHIHILLPPV--IIIKTLIRE------V 1617
+D L F++ L P FH H LL P +I K L++
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASP--FHSH---LLVPASDLINKDLVKNNVSFNAK 453
Query: 1618 EMG-PFKHTVDDGLDIRKAAFECMYTLLDT-CLDRVD 1652
++ P T DG D+R + ++D V
Sbjct: 454 DIQIPVYDT-FDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 81.6 bits (201), Expect = 2e-15
Identities = 114/696 (16%), Positives = 211/696 (30%), Gaps = 252/696 (36%)
Query: 628 IDLRPI-LTDG-------IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKV 679
RP+ L+ G +P SF +Q L + P
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPT-ASFFIASQ---------LQEQFNKILPEP--------- 44
Query: 680 TVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAAL 739
T A + A+L L ++ +LVEP+ QVL +
Sbjct: 45 TEGFAA--DDEPTTPAELVGKFLGYVS-----SLVEPSKVGQFDQVLNLC---------- 87
Query: 740 TSMLEFFKSLVL---------AELPGLSFSELL--NMLI-----APVMTGTALHKQAFHS 783
L F++ L A+L + + L+ LI A +M K++ +
Sbjct: 88 ---LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 784 LAKCVAALAITV------QREALPVVEKFLKEL----KTNKDDAHQVTIVALSHLVMSCN 833
L + V + Q + + +EL +T + + L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNT----DDYFEELRDLYQTYHVLVGDLIKFSAETLS---- 196
Query: 834 LQLTIVALSHLVMSCNLQLYTKLIDFL--LEGLTTNKSTSTNRTY-------------IQ 878
L + +++T+ ++ L LE N S + ++ Y IQ
Sbjct: 197 ------ELIRTTLDAE-KVFTQGLNILEWLE----NPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 879 --CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI 936
+ + G P ELR L+ T H
Sbjct: 246 LAHYVVTAKLLGFT---------P----------GELRS-YLKG-----------ATGHS 274
Query: 937 QSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQ 996
Q + +T+VA I A T + E + + ++ + GV +
Sbjct: 275 QGL-----VTAVA-----I--AETDSWESFFVSVRKAI----TVLFFI-----GVRCYEA 313
Query: 997 F-VPAIWAQLFLHCECQEEGT-------RNVVAECLGKLTLIDPSNL-LP---RLQESLK 1044
+ ++ + EG N+ E + ++ +N LP +++ SL
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD--YVNKTNSHLPAGKQVEISLV 371
Query: 1045 SNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYF--LLSPVIASVGDNFYKI- 1101
N A + V + S Y L A G + +I
Sbjct: 372 -NGA---------KNLVV-------------SGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 1102 -TAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAAD-IDQEVKERAISCM 1159
+ L +F+ V +PF S + A+D I++++ + +S
Sbjct: 409 FSERKLKFSNRFLPV-----------ASPFHSHLLV------PASDLINKDLVKNNVSFN 451
Query: 1160 GQIICNLGDYLKSELPV-----------CLPILLDRLRNEITRLTTV--KALTKIAASPL 1206
+ ++ +PV + +R+ + I RL V + T+ A+ +
Sbjct: 452 AK-------DIQ--IPVYDTFDGSDLRVLSGSISERIVDCIIRL-PVKWETTTQFKATHI 501
Query: 1207 RIDLRPILTDGIPILGSFLRKNQ-----RALKLSTL 1237
+D P G LG +N+ R + TL
Sbjct: 502 -LDFGP---GGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 70.8 bits (173), Expect = 4e-12
Identities = 114/738 (15%), Positives = 207/738 (28%), Gaps = 280/738 (37%)
Query: 900 PLILKYSREEDD-----ELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQV 954
PL L + E Q E F + P P + + T+ A+L
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP---EP-TEGFAADDEPTTPAEL--- 60
Query: 955 ILNAFTPTSEEVKSAASYTLGSIAEIISWQS-TSTSGVAQ--LQQFVPAIWAQLFL---- 1007
+ LG ++ ++ V L +F +L
Sbjct: 61 --------------VGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFE-----NCYLEGND 100
Query: 1008 -HCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKS----------------NSALM 1050
H + A+ L + L + +E +K+ NSAL
Sbjct: 101 IHA---------LAAKLLQ-----ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 1051 RTTHQSNQTFNVII--QRNDIHNHNEETSFIYSFYYFLLSPVIASVGD---NFYKITAEA 1105
R + N I Q N ++ EE +Y Y+ L+ +I + + T +A
Sbjct: 147 RAVGEGNAQLVAIFGGQGN-TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 1106 LLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165
V Q + ++ L +PS+ P D+
Sbjct: 206 EKVFTQGLNILEWLENPSN---TP------------------DK---------------- 228
Query: 1166 LGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFL 1225
DYL S +P+ P++ + ++A ++
Sbjct: 229 --DYLLS-IPISCPLI---------------GVIQLA--------------------HYV 250
Query: 1226 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESD-----LHIAQLTLT 1280
+ L + L L + VT A ++E+D + +T
Sbjct: 251 V-TAKLLGFTPGELRSYL-----KGATGHSQGLVT---AVAIAETDSWESFFVSVRKAIT 301
Query: 1281 LLTSI-AKIQ---PNALVEPA--AASILPQIGRHTDLTSVADL--KQVI-----LNAFTP 1327
+L I + PN + P+ S+ G + + S+++L +QV N+ P
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 1328 TSEEVKSAASYTLGSIAVGN-LQQYV----PFVLKEIENQPKRQYLLLHSLKEIISWQST 1382
++V I++ N + V P L Y L +L++
Sbjct: 362 AGKQV---------EISLVNGAKNLVVSGPPQSL----------YGLNLTLRKA-----K 397
Query: 1383 STSGVAQ----LQQFVPAIWAQLFL------HCECQEEGTRNVVAECLGKLTLIDPSNLL 1432
+ SG+ Q + + FL H + + + + + ++
Sbjct: 398 APSGLDQSRIPFSERKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI- 455
Query: 1433 PRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDS 1492
+ + D T D R L
Sbjct: 456 ----------------------QIPVYD--TFDGSDLR----------------VLSGSI 475
Query: 1493 ERKVVKMLLRLLEDKNGEVQNLA----------VKCLGPLVNKVKEFQ-VETIV-DALCS 1540
++V ++RL Q A LG L ++ K+ V IV L
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 1541 NMVSDKEQLRDISSIGLK 1558
N D G K
Sbjct: 536 NPDDD---------YGFK 544
Score = 64.3 bits (156), Expect = 4e-10
Identities = 104/606 (17%), Positives = 167/606 (27%), Gaps = 214/606 (35%)
Query: 734 LQGAALTSMLEFFKSLVLAELPG-LSFSELLNMLIAPVMTGTALH------KQAF-HSLA 785
+ + + L L+ G L L+ P TA ++ F L
Sbjct: 1 MDAYST-------RPLTLSH--GSLEHVLLV-----P----TASFFIASQLQEQFNKILP 42
Query: 786 KCVAALAITVQREALPVVE---KFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALS 842
+ A E E KFL + + + + + L L +
Sbjct: 43 EPTEGFA--ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--------LNLCLTEFE 92
Query: 843 HLVMSCNLQLYTKLIDF--LLEGLTTNKSTSTNRTY--IQCFAAICRQAGHRFAEHIERV 898
+ + N D L L T+ +T I+ + A F +
Sbjct: 93 NCYLEGN--------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-- 142
Query: 899 MPLILKYSREED-----------------DELREFCLQAC-EAFVQRCPKEITPHIQSIG 940
+ + E + +ELR+ L V K + +
Sbjct: 143 -SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSELI 199
Query: 941 RHTD-----LTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQ 995
R T T ++ + + N ++ Y L SI IS GV QL
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKD------Y-LLSIP--ISC---PLIGVIQLA 247
Query: 996 QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQ 1055
+V V A+ LG P L L+ + T H
Sbjct: 248 HYV--------------------VTAKLLG----FTPGELRSYLKGA---------TGHS 274
Query: 1056 SNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVG--DNFYKITAEALLVLQQFV 1113
+ + + IA ++F+ +A+ VL F
Sbjct: 275 Q-----------GL----------------VTAVAIAETDSWESFFVSVRKAITVL--FF 305
Query: 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCM--------GQIICN 1165
+R Y+ P TS + + E E S M Q+
Sbjct: 306 IGVR------CYEAYPNTS-------LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 1166 LGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASP-----LRIDLR----PILTD 1216
+ + S LP + + L N V ++ P L + LR P D
Sbjct: 353 V-NKTNSHLPAGKQVEI-SLVN--GAKNLV-----VSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 1217 --GIPILGSFLRKNQRALKLSTLLLLDT------LLVNYPSAISTEMLNKVTVELAPLVS 1268
IP F ++R LK S L LLV I+ + L K V
Sbjct: 404 QSRIP----F---SERKLKFSNRFLPVASPFHSHLLVPASDLINKD-LVKNNVSFNA--- 452
Query: 1269 ESDLHI 1274
D+ I
Sbjct: 453 -KDIQI 457
Score = 59.3 bits (143), Expect = 1e-08
Identities = 95/647 (14%), Positives = 171/647 (26%), Gaps = 216/647 (33%)
Query: 162 PLILKYSREEDD-----ELREFCLQACEAFVQRCPKEITPHIQ-----SITELCLTYITY 211
PL L + E Q E F + P+ + EL ++ Y
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 212 DPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 271
+ + E + D L
Sbjct: 68 ---------------------VSSLVEPSKVGQFDQ-------------------VLNLC 87
Query: 272 IA--TRRDLIG-DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPN 328
+ L G D++ L + L+ K I + A + R F + S
Sbjct: 88 LTEFENCYLEGNDIHALAAK-LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS--- 143
Query: 329 QMDQEDSPLCLLSTQVPSLVKALQCQLREKSIR---------TRQDCLALLRELVQTLPG 379
+L +A+ E + + D LR+L QT
Sbjct: 144 -----------------ALFRAVG----EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 380 CLAP----SLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEE--EDGEDEGEDDNEYSDD 433
+ S L + + + ++ +G++ E E+ + D +Y
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVF-------TQGLNILEWLENPSNTP--DKDYLLS 233
Query: 434 DDMSWKV--------RRAAAKCL----EAIIATRRDLIGDMYRLVSPPLIARFKEREENV 481
+S + AK L + + + G LV+ IA E
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES-- 291
Query: 482 KSDIFH--AYMAL-------LKGTRTFSPLTPSDPNQMDQ-----EDSPVCLLS------ 521
F A+ ++ + P T P+ ++ E P +LS
Sbjct: 292 ----FFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 522 TQVPSLVKALQCQLREKSIRTRQDCLALL------------RELMTSSDKDFRFMATNDL 569
QV V L +Q ++L+ + L L
Sbjct: 347 EQVQDYVNKTNSHLPA----GKQVEISLVNGAKNLVVSGPPQSLYG-------------L 389
Query: 570 MSELQKDSIKLDDD------SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAA 623
L+K D SERK+ + L V P L A+
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLK-----------FSNRFLPVAS--PFHSHLLVPAS 436
Query: 624 SPLRIDLRPILTDGIPILGSFLR---------KNQRALKLS-TLLLLDTLL---VNYPSA 670
+ DL + + ++ + R L S + ++D ++ V + +
Sbjct: 437 DLINKDLVK---NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 671 ISTEMLNKVT--VELAPLVSESDLHIAQLTLTLL--TSIAKIQPNAL 713
K T ++ P + + LT T + I L
Sbjct: 494 TQF----KATHILDFGPGGASG---LGVLTHRNKDGTGVRVIVAGTL 533
Score = 54.7 bits (131), Expect = 4e-07
Identities = 86/590 (14%), Positives = 162/590 (27%), Gaps = 191/590 (32%)
Query: 370 LRELVQTLPGCLAPSLPALIPDVTS---VAE--WDEEEGLGGEGGGEGMDTEEEDGEDEG 424
R L + G L L L+P T+ +A ++ + E TE +DE
Sbjct: 6 TRPLTLSH-GSLEHVL--LVP--TASFFIASQLQEQFNKILPE------PTEGFAADDEP 54
Query: 425 EDDNE-------YSDDDDMSWKVRRAAAKCLEAIIA--TRRDLIG-DMYRLVSPPLIARF 474
E Y + + L + L G D++ L + L+
Sbjct: 55 TTPAELVGKFLGYVSSL-VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK-LLQEN 112
Query: 475 KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQ-MDQEDSPVCLL-----STQV---- 524
K I + A + R F + S + + + ++ + + +T
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 525 --------PSLVKALQCQLREKSIRTRQDCLALLRELMTSS-DKDFRFMATNDLMSELQK 575
LV L I+ L EL+ ++ D + F +++ L+
Sbjct: 173 LRDLYQTYHVLVGDL--------IKF---SAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 576 DSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAAS-PLRIDLRPI- 633
S D D L I S PL I
Sbjct: 222 PSNTPDKD---------------------------------YLLSIPISCPL------IG 242
Query: 634 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESD-- 691
+ L ++ + L + L L + VT A ++E+D
Sbjct: 243 VIQ----LAHYVV-TAKLLGFTPGELRSYL-----KGATGHSQGLVT---AVAIAETDSW 289
Query: 692 ---LHIAQLTLTLLTSI-AKIQ---PNALVEPAAASILPQVLQIAKSPLL--QG---AAL 739
+ +T+L I + PN + P+ + + SP+L +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 740 TSMLEFFKSLVLAELPG---LSFSELLNMLIAP---VMTG---------TALHK------ 778
+ + LP + S L+N V++G L K
Sbjct: 350 QDYVNKTN----SHLPAGKQVEIS-LVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 779 --QA---------------------FHS--LAKCVAALAITVQREALPVVEKFLK----E 809
Q+ FHS L + + + + K ++ +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 810 LKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDF 859
D ++ + L + + + T ++DF
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPV------KWETTTQFK-ATHILDF 504
Score = 54.3 bits (130), Expect = 4e-07
Identities = 70/459 (15%), Positives = 129/459 (28%), Gaps = 162/459 (35%)
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
+ L DL + L+ L +L K ++T+
Sbjct: 170 FEELRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEK----------------VFTQG 212
Query: 119 IDFL--LEGLTTNKSTSTNRTY-------------IQ--CFAAICRQAGHRFAEHIER-- 159
++ L LE N S + ++ Y IQ + + G E
Sbjct: 213 LNILEWLE----NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 160 ---------VMPLILKYSREEDDELREFCLQACE-AFVQ--RCPKEITPHIQSITELCLT 207
V + + + + +A F RC E P+ T L +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWES-FFVSVRKAITVLFFIGVRC-YEAYPN----TSLPPS 322
Query: 208 YITYDPNYNYEDEEEGLGGEGGGEG----M----DTEEEDGEDEGEDDNEYSDDDDMSWK 259
+ ED E EG M + +E +D N +
Sbjct: 323 IL--------EDSLE------NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG----- 363
Query: 260 VRRAAAKCLEAIIATRRDLI--G---DMYRLVS-------PPLI----ARFKEREENVKS 303
++ +++ ++L+ G +Y L P + F ER+ +
Sbjct: 364 -KQVEI----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 304 D---I---FHAYMALLKGTRTFSP-LTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLR 356
+ FH S L P+ + + +D L+ V K +Q +
Sbjct: 419 RFLPVASPFH------------SHLLVPA--SDLINKD----LVKNNVSFNAKDIQIPV- 459
Query: 357 EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSV-AEWDEEE----------GLG 405
D LR L ++ ++ + + +W+ G G
Sbjct: 460 -YDTFDGSD----LRVLSGSI-------SERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 406 GEGGGEGMDTEEEDGEDEG-----EDDNEYSDDDDMSWK 439
G G + +DG G + + DDD +K
Sbjct: 508 GASGLGVLTHRNKDG--TGVRVIVAGTLDINPDDDYGFK 544
Score = 53.5 bits (128), Expect = 8e-07
Identities = 72/436 (16%), Positives = 148/436 (33%), Gaps = 113/436 (25%)
Query: 1423 LTL----IDPSNLLP--------RLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDF- 1469
LTL ++ L+P +LQE + + +D ++ +
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNK-------ILPEPTEGFAADDEPTTPAELV 61
Query: 1470 -RFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLED---KNGEVQNLAVKCLGPLVNK 1525
+F+ + S ++ + D V+ + L E+ + ++ LA K L
Sbjct: 62 GKFLGY--VSSLVEPSKVGQFDQ----VLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 1526 VKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS---VVYCL----GDRNSSSNMKI 1578
+ + + E I + + + +++ + + +S + V + + G +++
Sbjct: 116 LVKTK-ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG----NTDDYF 170
Query: 1579 DTLAFTHTLLTTHPPAV---FHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKA 1635
+ L L T+ V L LIR T GL+I +
Sbjct: 171 EELR---DLYQTYHVLVGDLIKFSAETLSE-------LIRTTLDAEKVFT--QGLNILE- 217
Query: 1636 AFECMYTLLDTCLDRVDMFEFLNHLE-S----GLRDHYDIKMLTYLMLARLAQMTPAALL 1690
L+ + D ++L + S G+ I++ Y++ A+L TP L
Sbjct: 218 -------WLENPSNTPDK-DYLLSIPISCPLIGV-----IQLAHYVVTAKLLGFTPGELR 264
Query: 1691 QRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTI----QDADKNPAL 1746
L+ + VT A + + + S +A+ L I +A N +L
Sbjct: 265 SYLKGATGHSQGLVTAVAIAET-----DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 1747 NDFVATIKNSPELQTIFDSMQKDSSLSNQQDPHMM----DMNKNPALNDFVATI-KNSPE 1801
P S+ +DS +N+ P M ++ + + D+V + P
Sbjct: 320 ---------PP-------SILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPA 362
Query: 1802 LQTIFDSMQKDSSLSN 1817
+ + SL N
Sbjct: 363 GKQVE------ISLVN 372
Score = 47.7 bits (113), Expect = 4e-05
Identities = 51/276 (18%), Positives = 82/276 (29%), Gaps = 92/276 (33%)
Query: 613 PLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKN----------QRALKLSTLLLLDT 662
+ + R D T G IL + N ++ ++
Sbjct: 1640 KAAQDVWN------RADNHFKDTYGFSILD-IVINNPVNLTIHFGGEKGKRIR------- 1685
Query: 663 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTL-----TL-LTSIAKIQPNAL--V 714
NY SA+ E + ++ + E + H T L T QP AL +
Sbjct: 1686 --ENY-SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--QP-ALTLM 1739
Query: 715 EPAAASIL------PQVLQIAKSPLLQG------AALTSMLEF--FKSLV-LAELPGLSF 759
E AA L P A G AAL S+ + +SLV + G++
Sbjct: 1740 EKAAFEDLKSKGLIPADATFA------GHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 760 SELLN----------ML-IAPVMTGTALHKQAFHSLAKCVAA-----LAI---------T 794
+ M+ I P + ++A + + V + I
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 795 V---QREALPVVEKFLKELKTNKDDAHQVTIVALSH 827
V AL V L +K K + I+ L
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQK-----IDIIELQK 1884
Score = 42.0 bits (98), Expect = 0.002
Identities = 32/243 (13%), Positives = 73/243 (30%), Gaps = 96/243 (39%)
Query: 1610 IKTLIREVEMGPFKHTV----DDGLDIRKAAFECMY-TLLDTCLDRVDMFEFLNHLESGL 1664
I ++ P T+ + G IR+ ++ T++D L +F+ +N +
Sbjct: 1661 ILDIVIN---NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 1665 RDHYDIKMLTYLMLARLAQMTPA------ALLQRLERIVEPLRNTVTLKVKANSVKQ--- 1715
+ +L+ + Q PA A + L K+ +
Sbjct: 1718 TFRSEKGLLS---ATQFTQ--PALTLMEKAAFEDL---------------KSKGLIPADA 1757
Query: 1716 --------EYEKQDELKRSAMRAVAALLTIQDADKNPALNDFVATIKNSPEL-----QTI 1762
EY +A+ ++A +++I+ ++ + T+
Sbjct: 1758 TFAGHSLGEY--------AALASLADVMSIESL------------VE----VVFYRGMTM 1793
Query: 1763 FDSMQKDSSLSNQQDPHMMDMNKNP--------ALNDFVATIK------------NSPEL 1802
++ +D + + M+ +N AL V + N
Sbjct: 1794 QVAVPRDE--LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 1803 QTI 1805
Q +
Sbjct: 1852 QYV 1854
Score = 39.6 bits (92), Expect = 0.013
Identities = 47/301 (15%), Positives = 91/301 (30%), Gaps = 114/301 (37%)
Query: 910 DDELRE---FCLQACEAFVQRCPKEITPHI-----QSIG-RHTDLT--SVADLKQVILNA 958
D+ ++ F + V P +T H + I ++ + ++ D K
Sbjct: 1650 DNHFKDTYGFSILDI---VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 959 FTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAI-------WAQLFLHCEC 1011
F +E + SYT S ++ ++T Q Q PA+ + L
Sbjct: 1707 FKEINE---HSTSYTFRSEKGLL----SAT----QFTQ--PALTLMEKAAFEDL------ 1747
Query: 1012 QEEGTRN---VVA-----E-----CL-GKLTLID-----------PSNLLPRLQESLKSN 1046
+ +G A E L +++ +PR E +SN
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR-DELGRSN 1806
Query: 1047 SALMRTTHQ------SNQTFNVIIQRND--------IHNHNEETSFIYSFYYFLLSPVIA 1092
++ S + +++R I N+N E Y V A
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ-QY---------VAA 1856
Query: 1093 SVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVK 1152
GD AL + + I+ + + ++ L+ + +EV+
Sbjct: 1857 --GD------LRALDTVTNVLNFIK----------------LQKIDIIELQKSLSLEEVE 1892
Query: 1153 E 1153
Sbjct: 1893 G 1893
Score = 39.6 bits (92), Expect = 0.013
Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 78/207 (37%)
Query: 474 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLV---KA 530
FKE E+ S F + LL T+ TQ P+L KA
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQ-----------------------FTQ-PALTLMEKA 1742
Query: 531 LQCQLREKSIRTRQDCLA------------------------LLR---ELMTSSDKDFRF 563
L+ K + A ++ M +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 564 MATNDLMSELQKDSI--KLDDDSERKVVKMLLR----LLEDKN-----------GEVQNL 606
+N M + + ++ + VV+ + + L+E N G+++
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR-- 1860
Query: 607 AVKCLGPLFKALTKIAASPLRIDLRPI 633
A+ + + + K+ +ID+ +
Sbjct: 1861 ALDTVTNVLNFI-KLQ----KIDIIEL 1882
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 3e-12
Identities = 111/722 (15%), Positives = 205/722 (28%), Gaps = 236/722 (32%)
Query: 925 VQRCPKEITPH-IQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISW 983
Q K+I + + D V D+ + IL + EE+ II
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-----SKEEID-----------HIIM- 56
Query: 984 QSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL 1043
+ SG +L W QEE + V E L + L+ ++
Sbjct: 57 SKDAVSGTLRL------FW----TLLSKQEEMVQKFVEEVLRI----NYKFLMSPIKTEQ 102
Query: 1044 KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKIT- 1102
+ S + R I QR+ ++N N+ + + Y ++
Sbjct: 103 RQPSMMTR---------MYIEQRDRLYNDNQ-----------VFAK---------YNVSR 133
Query: 1103 AEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIY-------QCTLVRLKAADIDQEVKERA 1155
+ L L+Q + +RP A I + +
Sbjct: 134 LQPYLKLRQALLELRP---------AKNVL-IDGVLGSGKTW-VALDVCLSYKVQ----- 177
Query: 1156 ISCM-GQII-CNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPI 1213
M +I NL + E +L+ L+ + ++ T + I LR
Sbjct: 178 -CKMDFKIFWLNLKNCNSPET------VLEMLQKLLYQID--PNWTSRSDHSSNIKLR-- 226
Query: 1214 LTDGIPILGSFLRKNQRALKLSTLLLLD----------------TLLVNYPSAISTEMLN 1257
+ L L+ + LL+L LL ++ +
Sbjct: 227 IHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 1258 KVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA-AASILPQ----IG------ 1306
T + L S +LL +P L P + P+ I
Sbjct: 284 ATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDG 340
Query: 1307 -------RHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSI---------AV----- 1345
+H + + + + LN P E + + S+ +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEP--AEYR--KMFDRLSVFPPSAHIPTILLSLIW 396
Query: 1346 GNLQQYVP-FVLKE------IENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIW 1398
++ + V+ + +E QPK + + S+
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI------------------------- 431
Query: 1399 AQLFLHCECQEEGT--RNVVAECLGKLTLIDPSNLLPRLQES---------LKSNSALMR 1447
L L + + E R++V + D +L+P + LK+ R
Sbjct: 432 -YLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 1448 TTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 1507
T+ V DFRF+ QK I+ D + +L L+
Sbjct: 490 MTLFRMVFL-----------DFRFLE--------QK--IRH-DSTAWNASGSILNTLQQL 527
Query: 1508 NGEVQNLAVKCLGP--LVNKVKEF--QVETIVDALCSNMVSDKEQLRDISSIGLKTVISV 1563
+ LVN + +F ++E N++ K D+ I L
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEE-------NLICSKY--TDLLRIALMAEDEA 578
Query: 1564 VY 1565
++
Sbjct: 579 IF 580
Score = 60.3 bits (145), Expect = 6e-09
Identities = 91/651 (13%), Positives = 190/651 (29%), Gaps = 194/651 (29%)
Query: 797 REALPV-VEKFLKELKTN--KDDAHQV-TIVALSHLVMSCNLQLTIVALSHLVMSCNLQL 852
++ L V + F+ +D + + + H++MS + + L ++S ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 853 YTKLI--------DFLLEGLTT-NKSTSTNRT-YIQCFAAICRQAGHRFAEHIERVMPLI 902
K + FL+ + T + S YI+ + + +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ------------RDRLYNDNQVF 126
Query: 903 LKY--SREED-DELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAF 959
KY SR + +LR+ L E+ P +++ L S K +
Sbjct: 127 AKYNVSRLQPYLKLRQ-ALL-----------ELRPA-KNVLIDGVLGSG---KTW-VALD 169
Query: 960 TPTSEEVKSAASYTLGSIAEIISW-----QSTSTSGVAQLQ----QFVPAIWAQ------ 1004
S +V+ + I W ++ + + LQ Q P ++
Sbjct: 170 VCLSYKVQCKMDFK-------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 1005 LFLHCECQEEGTRNVVAE-----CLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQT 1059
+ L + R ++ CL L L++ N + + + ++ TT T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQN--AKAWNAFNLSCKILLTTRFKQVT 278
Query: 1060 FNVIIQRNDIH---NHN------EETSFIYSFY----YFLL-------SP-VIASVG--- 1095
+ + H +H+ +E + Y L +P ++ +
Sbjct: 279 -DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1096 -------DNFYKITAEALL-VLQQFVKVIRPLTSPSSY-DFAPFTSD--IYQCTLVRLKA 1144
DN+ + + L +++ + V+ P + + F I L +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 1145 ADIDQEVKERAISCMGQIICNL-GDYLKSELPVCLPILLDRLRNE-------ITRLTTVK 1196
I +V + +P L +L NE + K
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 1197 ALTKIAASPLRID----------------------LRPILTDGIPILGSFLRKNQRALKL 1234
P +D R + D FL ++ ++
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----F-RFL---EQKIRH 509
Query: 1235 STLL------LLDTL--LVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIA 1286
+ +L+TL L Y I ++D +L +L +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYIC----------------DNDPKYERLVNAILDFLP 553
Query: 1287 KIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 1337
KI+ N + ++TDL ++ L + A
Sbjct: 554 KIEENLI-----------CSKYTDLL------RIAL--MAEDEAIFEEAHK 585
Score = 59.5 bits (143), Expect = 1e-08
Identities = 84/546 (15%), Positives = 153/546 (28%), Gaps = 193/546 (35%)
Query: 1302 LPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361
+ D V D+ + IL + EE+ I
Sbjct: 26 EDAFVDNFDCKDVQDMPKSIL-----SKEEID------------------------HIIM 56
Query: 1362 QP---KRQYLLLHSLKEIISWQSTSTSGVAQLQQFV--------PAIWAQLFLHCEC-QE 1409
L +L + +Q+FV + + + E Q
Sbjct: 57 SKDAVSGTLRLFWTLL---------SKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQP 105
Query: 1410 EGTRNVVAECLGKL----TLIDPSNLLPRLQESLKSNSALMRT----------------T 1449
+ E +L + N+ RLQ LK AL+ T
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 1450 VLTAVKFTISDQMTSSDKDFR-F-------MATNDLMSELQK----------------DS 1485
+ DF+ F + ++ LQK +
Sbjct: 165 WVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 1486 IKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSD 1545
IKL S + L RLL+ K E CL L ++ N V +
Sbjct: 223 IKLRIHSIQAE---LRRLLKSKPYE------NCL--L-----------VLL----N-VQN 255
Query: 1546 KEQLR--DISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPH--IH 1601
+ ++S K +++ R + TH L H P
Sbjct: 256 AKAWNAFNLSC---KILLTT------RFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKS 305
Query: 1602 ILLPPV-IIIKTLIREVEMG-PFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNH 1659
+LL + + L REV P + ++ I A D + ++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSI-----I--AES---------IRDGLATWDNW-- 347
Query: 1660 LESGLRDHYDIKMLTYLMLARLAQMTPAALLQRLERI-VEPLRNTVTLKVKA----NSVK 1714
H + LT ++ + L + PA + +R+ V P + + + + +K
Sbjct: 348 ------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 1715 QEYEK-QDELKRSAMRAVAALLTIQDADKNPALNDFVATIKNSPELQTIFDSMQKDSSLS 1773
+ ++L + ++ +K P + +I P + + K L
Sbjct: 402 SDVMVVVNKLHKYSL-----------VEKQP--KESTISI---PSIY--LELKVK---LE 440
Query: 1774 NQQDPH 1779
N+ H
Sbjct: 441 NEYALH 446
Score = 52.9 bits (126), Expect = 1e-06
Identities = 86/671 (12%), Positives = 178/671 (26%), Gaps = 209/671 (31%)
Query: 155 EHIERVMPLILKYSREEDD-------ELREFCLQACEAFVQRCPKEITPHIQSITELCLT 207
+ ++ + IL E D L + +E+ +Q E L
Sbjct: 36 KDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEM---VQKFVEEVL- 87
Query: 208 YITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS-WKVRRAAAK 266
NY + L E + D Y+D+ + + V R
Sbjct: 88 ----RINYKF------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR---- 133
Query: 267 CLEAIIATRRDLIGDMYRLVSPPLI-----------------ARFKEREENVKSDIFHAY 309
L+ + R+ L L + + + + IF +
Sbjct: 134 -LQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--W 186
Query: 310 MALLKGTRTFSPLTPSDP--NQMDQEDSPLCLLSTQVPSLVKALQCQLREK-SIRTRQDC 366
+ L + L Q+D + S+ + + ++Q +LR + ++C
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 367 LALLR-----ELVQTL-PGC--LAPSLPALIPDVT----SVAEWDEEEGLGGEGGGEGMD 414
L +L + C L +T V + L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKIL----------LTTRFKQVT-----DFLSAATTTHISL 291
Query: 415 TEEEDG--EDEGED------DNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 466
DE + D D + R ++ +I + R
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQD-------LPREVLTTNPRRLS----IIAESIR-- 338
Query: 467 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQM--D----QEDSPVCLL 520
+N K +++ + + L P++ +M +
Sbjct: 339 ------DGLATWDNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAH---- 386
Query: 521 STQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDS-IK 579
+P+++ L+L+ + SD ++++L K S ++
Sbjct: 387 ---IPTIL------------------LSLIWFDVIKSDVM-------VVVNKLHKYSLVE 418
Query: 580 LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLG--PLFKALTKIAASPLRID-------- 629
+ + L+ K L + + K P +D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 630 --------------LRPILTDGIPILGSFLRKNQRALKLSTLL------LLDTL--LVNY 667
R + D FL ++ ++ + +L+TL L Y
Sbjct: 479 HHLKNIEHPERMTLFRMVFLD----F-RFL---EQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 668 PSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQ 727
I ++D +L +L + KI+ N L+ +L L
Sbjct: 531 KPYI----------------CDNDPKYERLVNAILDFLPKIEEN-LICSKYTDLLRIALM 573
Query: 728 IAKSPLLQGAA 738
+ + A
Sbjct: 574 AEDEAIFEEAH 584
Score = 52.2 bits (124), Expect = 2e-06
Identities = 80/531 (15%), Positives = 145/531 (27%), Gaps = 174/531 (32%)
Query: 6 EQLRDISSIGL-------KTVISELPLGSNALAANVCR--RITGKLSTAI------EKQE 50
+LR ++ + KT +A +VC ++ K+ I
Sbjct: 145 LELRPAKNVLIDGVLGSGKTW----------VALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 51 DVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRT---IVALSHLV 107
+V L++L LL + P++ S ++ R L L+
Sbjct: 195 PETV----LEMLQKLLYQID---PNWT---------SRSDHSSNIKLRIHSIQAELRRLL 238
Query: 108 MS-----CNLQL----YTKLID-F-----LLEGLTTNKSTSTNRTYIQCFAAICRQAGHR 152
S C L L K + F +L LTT T+ H
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTD-------FLSAATTTHI 289
Query: 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE---ITP-HIQSITELCLTY 208
+H + DE++ L+ + Q P+E P + I E
Sbjct: 290 SLDHHSMTL---------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 209 I-TYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKC 267
+ T+D N+ + + K+
Sbjct: 341 LATWD-NWKHVN-------------------------------------CDKLTTIIESS 362
Query: 268 LEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDP 327
L + M+ +S + F + I ++L+ + + SD
Sbjct: 363 LNVL---EPAEYRKMFDRLS---V--F---PPSAH--IPTILLSLI-----WFDVIKSDV 404
Query: 328 NQMDQEDSPLCLLSTQVPSLVKAL-QCQLREKSIRTRQDCLALLRELVQ--TLPGCLAPS 384
+ + L+ Q ++ L K ++ AL R +V +P
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK--VKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 385 LPALIPDVTSVAEWDEEEGLGGEGG------GEGMDTEEEDGEDEGEDDNEYSDDDDMSW 438
LIP D G + E + D +
Sbjct: 463 --DLIPP-----YLD---------QYFYSHIGHHLKNIEHPERMT-LFRMVFLDFRFLEQ 505
Query: 439 KVRRA--AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFH 487
K+R A +I+ T + L Y+ P I + E + + I
Sbjct: 506 KIRHDSTAWNASGSILNTLQQL--KFYK----PYICDNDPKYERLVNAILD 550
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 69.8 bits (170), Expect = 7e-12
Identities = 96/759 (12%), Positives = 232/759 (30%), Gaps = 90/759 (11%)
Query: 48 KQEDVSVQLEALDILSDLLSRFGALLPSFHF-----VILTALLPQLSSPRQAVRKRTIVA 102
ED + A L + +L S +++ L +R +
Sbjct: 138 DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC 197
Query: 103 LSHLVMSCNLQLYTKLIDFL--LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERV 160
++ ++S L + F+ L L ++ + + + R H+ +
Sbjct: 198 VNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNI 257
Query: 161 MPLILKYSREEDDELR----EFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYN 216
+ +L+ ++++D+ + EF L E C + H+ + + + + Y
Sbjct: 258 VEYMLQRTQDQDENVALEACEFWLTLAEQ--PICKDVLVRHLPKLIPVLVNGMKYSD--- 312
Query: 217 YEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR 276
+ + DD W +R+ +A L+ + R
Sbjct: 313 -------------------IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353
Query: 277 DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKG-TRTFSPLTP----------S 325
D ++ + P L E VK A+ +G + P P S
Sbjct: 354 D---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410
Query: 326 DPNQMDQ-----------EDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELV 374
D + + T + L+ L ++ + + R ++ + L
Sbjct: 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470
Query: 375 QTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 434
+ L P L ++ + + + L D + G N+
Sbjct: 471 EEACTELVPYLAYILDTLVFAFSKYQHKNL-----LILYDAIGTLADSVGHHLNKPEYIQ 525
Query: 435 DMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 494
+ + + +DL + L S + + ++ + L++
Sbjct: 526 ----MLMPPLIQKWNMLKDEDKDLFPLLECLSS--VATALQSGFLPYCEPVYQRCVNLVQ 579
Query: 495 GTRTFSPLTPSDPNQMDQEDSPVCLLSTQ-VPSLVKALQCQLREKSIRTRQDCLALLREL 553
T + L + P+Q + D +++ + L + L + + + R + L L+ +
Sbjct: 580 KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI--EQLVARSNILTLMYQC 637
Query: 554 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGP 613
M + R + L+ +L K + + +L L + V N A +G
Sbjct: 638 MQDKMPEVRQSSFA-LLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGE 696
Query: 614 LFKALTKIAASPLRIDLRPILTDGIPILGSFLR--KNQRALKLSTLLLLDTLLVNYPSAI 671
+ + + I+++P + + L + + L +T + + L P +
Sbjct: 697 I--------SIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748
Query: 672 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKS 731
+ + + L + D + ++ + P+ ++ V
Sbjct: 749 APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI-QDFIFFCDAVASWINP 807
Query: 732 PLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPV 770
+L FK+ + ++ + P+
Sbjct: 808 KDDLRDMFCKILHGFKNQ----VGDENWRRFSDQFPLPL 842
Score = 69.4 bits (169), Expect = 9e-12
Identities = 90/725 (12%), Positives = 212/725 (29%), Gaps = 113/725 (15%)
Query: 519 LLSTQVPSLVKALQCQL----REKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQ 574
+ P + + + + ++ D L L L+ S D + A L +
Sbjct: 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICE 157
Query: 575 KDSIKLDDDSERK----VVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDL 630
+ LD D + ++ L+ + + ++++ AV C+ + T+ L
Sbjct: 158 DSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--------AL 209
Query: 631 RPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSES 690
+ I L + + ++ + L LL + M N V L +
Sbjct: 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ-RTQDQ 268
Query: 691 DLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLV 750
D ++A ++A+ + + LP+++ + L+ G + +
Sbjct: 269 DENVALEACEFWLTLAE---QPICKDVLVRHLPKLIPV----LVNGMKYSDIDIIL---- 317
Query: 751 LAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKEL 810
++ T A + LA + E LP + LKEL
Sbjct: 318 ----------LKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKEL 367
Query: 811 KTNKD-DAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKS 869
+ + + I+ L + C + +LI L++ L+ K+
Sbjct: 368 LFHHEWVVKESGILVLGAIAEGCMQGMI-------------PYLPELIPHLIQCLSDKKA 414
Query: 870 TSTNRTY--IQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQR 927
+ T + +A +++ +M +LK + + ++E A +
Sbjct: 415 LVRSITCWTLSRYAHWVVSQPPD--TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472
Query: 928 CPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTS 987
E+ P++ I ++ AF+ + +G++A+ +
Sbjct: 473 ACTELVPYLAYI------------LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 520
Query: 988 TSGVAQLQQFVPAIWAQLFLHCECQEE--GTRNVVAECLGKLTLIDPSNLLPRLQESLKS 1045
+ L + W L + + VA L L + R ++
Sbjct: 521 PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQK 580
Query: 1046 NSALMRTTHQSNQTFNVIIQR-----------------NDIHNHNEETSFIYSFY----- 1083
A + + + +I ++ + Y
Sbjct: 581 TLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 640
Query: 1084 ---------YFLLSPVIASVGDNF------------YKITAEALLVLQQFVKVIRPLTSP 1122
+ LL + + + + E + V I ++
Sbjct: 641 KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQ 700
Query: 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILL 1182
+ P+ + + + + + + E +G++ + L +
Sbjct: 701 MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 760
Query: 1183 DRLRN 1187
LRN
Sbjct: 761 TSLRN 765
Score = 67.5 bits (164), Expect = 4e-11
Identities = 122/935 (13%), Positives = 256/935 (27%), Gaps = 159/935 (17%)
Query: 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQ 140
L +L +L S + R + + L + V + + DF+ N S+
Sbjct: 50 LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRAT 109
Query: 141 CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-Q 199
I A ++ ++P + ED E A + + + + +
Sbjct: 110 VGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169
Query: 200 SITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWK 259
+ + + S K
Sbjct: 170 RPLNIMIPKFL--------------------QFFK--------------------HSSPK 189
Query: 260 VRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 319
+R A C+ I +R + L A + E V+ ++ A
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA----------L 239
Query: 320 SPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQT--L 377
L + L + ++V+ + + +++ + L +
Sbjct: 240 VMLLEVRMD----------RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289
Query: 378 PGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS 437
L LP LIP + + ++ + + D DD
Sbjct: 290 KDVLVRHLPKLIPVLVNGMKYSDID-------------IILLKGDVEGGSGG--DDTISD 334
Query: 438 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497
W +R+ +A L+ + RD ++ + P L E VK A+ +G
Sbjct: 335 WNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391
Query: 498 TFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557
+ +P L+ L L +K R L
Sbjct: 392 QG--------------------MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH-- 429
Query: 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKA 617
++S+ +K ++ LL+ + D N VQ A L +
Sbjct: 430 ----------WVVSQPPDTYLK-------PLMTELLKRILDSNKRVQEAACSAFATLEEE 472
Query: 618 LTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLL------VNYPSAI 671
+L P L + L K Q L + TL +N P I
Sbjct: 473 ACT--------ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524
Query: 672 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEP---AAASILPQVLQI 728
M + + DL L+ + + + EP +++ + L
Sbjct: 525 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQ 584
Query: 729 AKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCV 788
A Q + + F + L L GL +E L I ++ + + + + +
Sbjct: 585 AMLNNAQPDQYEAPDKDFMIVALDLLSGL--AEGLGGNIEQLVARSNILTLMYQCMQDKM 642
Query: 789 AALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMS--CNLQLTIVALSHLVM 846
+ + + + + +K D + L+ +S N I +S +
Sbjct: 643 PEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG 702
Query: 847 SCNLQLYTKLIDFLLEGLTTNKSTSTNR-TYIQCFAAICRQAGHRFAEHIERVMPLILKY 905
++ L+E + + T + A +++ +
Sbjct: 703 IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTS 762
Query: 906 SRE-EDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSE 964
R D+E ++ + + P + + + P +
Sbjct: 763 LRNIRDNEEKDSAFRGICTMISVNPSGVIQDF------------IFFCDAVASWINP-KD 809
Query: 965 EVKSAASYTLGSIAEIIS---WQSTSTSGVAQLQQ 996
+++ L + W+ S L++
Sbjct: 810 DLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKE 844
Score = 65.2 bits (158), Expect = 2e-10
Identities = 110/814 (13%), Positives = 266/814 (32%), Gaps = 139/814 (17%)
Query: 935 HIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQL 994
++++ ++ +K LN +S +++ + +IA Q+
Sbjct: 75 NVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQN--------- 125
Query: 995 QQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLT-----LIDPS-------NLLPRLQES 1042
P + +L + ++ T L K+ ++D ++P+ +
Sbjct: 126 ---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182
Query: 1043 LKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKIT 1102
K +S +R+ + N I T + + + A GD ++
Sbjct: 183 FKHSSPKIRS--HAVACVNQFII--------SRTQALMLHIDSFIENLFALAGDEEPEVR 232
Query: 1103 AEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQI 1162
L ++V P ++ + D D+ V A +
Sbjct: 233 KNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR---------TQDQDENVALEACEFWLTL 283
Query: 1163 ICN--LGDYLKSELPVCLPILLDRLRNEITRLTTVKA----------------LTKIAAS 1204
D L LP +P+L++ ++ + +K L K +A+
Sbjct: 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAA 343
Query: 1205 PLRIDL----RPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVT 1260
L + +L +P+L L ++ +K S +L+L + + L ++
Sbjct: 344 ALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELI 402
Query: 1261 VELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQV 1320
L +S+ + +T L+ A + + ++ +
Sbjct: 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE---------------- 446
Query: 1321 ILNAFTPTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEI-----ENQPKRQYLLLHS 1372
+L +++ V+ AA ++ L Y+ ++L + + Q K +L +
Sbjct: 447 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 506
Query: 1373 LKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLL 1432
+ + + +Q +P + + + + ++ + ECL + S L
Sbjct: 507 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD--LFPLLECLSSVATALQSGFL 564
Query: 1433 PRLQESLKSNSALMRTTVLTAVKFTIS-DQMTSSDKDFRFMATN---DLMSELQKDSIKL 1488
P + + L++ T+ A+ DQ + DKDF +A + L L + +L
Sbjct: 565 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQL 624
Query: 1489 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQ 1548
S ++ ++ + ++DK EV+ + LG L + V+ +
Sbjct: 625 VARS--NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ-HVKPCIADF------MPIL 675
Query: 1549 LRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVI 1608
+++ + + + +G+ ++ P+I ++L ++
Sbjct: 676 GTNLNPEFISVCNNATWAIGE------------------ISIQMGIEMQPYIPMVLHQLV 717
Query: 1609 IIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMF--EFLNHLESGLRD 1666
I + + + + L C V +F+ + LR+
Sbjct: 718 EIIN------------RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 765
Query: 1667 HYDI--KMLTYLMLARLAQMTPAALLQRLERIVE 1698
D K + + + + P+ ++Q +
Sbjct: 766 IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCD 799
Score = 43.6 bits (102), Expect = 6e-04
Identities = 72/601 (11%), Positives = 165/601 (27%), Gaps = 74/601 (12%)
Query: 1257 NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVAD 1316
N V + I L + + L+ ++ I +L + D
Sbjct: 74 NNVKAHFQNFPNGVTDFIKSECLNNIGD-----SSPLIRATVGILITTIASKGELQNWPD 128
Query: 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQ-------------P 1363
L + + A L I + + VL N P
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 1364 KRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL 1423
K + + + + I ++ + L + + LF +E R V L L
Sbjct: 189 KIRSHAVACVNQFIISRTQA------LMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242
Query: 1424 TLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQK 1483
+ LLP + ++ + +T +++ + +L
Sbjct: 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIP 302
Query: 1484 DSIKLDDDSERKVVKMLLRLLEDKNGE-------VQNLAVKCLGPLVNKVKEFQVETIVD 1536
+ S+ ++ + + G+ ++ + L L N ++ + I+
Sbjct: 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILP 362
Query: 1537 ALCSNMVSDKEQLRDISSIGLKTVIS----------------VVYCLGDRNSSSNMKIDT 1580
L + + +++ + L + ++ CL D + ++ T
Sbjct: 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD--KKALVRSIT 420
Query: 1581 LAFTHTLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECM 1640
++ L+ ++ K +D +++AA
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELL--------------KRILDSNKRVQEAACSAF 466
Query: 1641 YTLLDTCLDRVDMFEFLNHLESGLR---DHYDIKMLTYLMLARLAQMTPAALLQRLERIV 1697
TL + ++ +L ++ L Y K L L A +
Sbjct: 467 ATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524
Query: 1698 EPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQDADKNPALNDFVATIKNSP 1757
+ L L K N +K E + L AL + P V ++ +
Sbjct: 525 QML--MPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTL 582
Query: 1758 ELQTIFDSMQKDSSLSNQQD----PHMMDMNKNPALNDFVATIKNSPELQTIFDSMQKDS 1813
+ ++ ++ ++ + + S L ++ MQ
Sbjct: 583 AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 642
Query: 1814 S 1814
Sbjct: 643 P 643
Score = 40.5 bits (94), Expect = 0.006
Identities = 39/202 (19%), Positives = 64/202 (31%), Gaps = 13/202 (6%)
Query: 28 NALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFV--ILTALL 85
N + + + + + D + ALD+LS L G + ILT +
Sbjct: 576 NLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY 635
Query: 86 PQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDF---LLEGLTTNKSTSTNRTYIQCF 142
+ VR+ + L L +C + + DF L L + N
Sbjct: 636 QCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCN-NATWAI 694
Query: 143 AAICRQAGHRFAEHIERVMPLILKY--SREEDDELREFCLQACEAFVQRCPKEITPHIQS 200
I Q G +I V+ +++ L E CP+E+ P +Q
Sbjct: 695 GEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ 754
Query: 201 ITELCLTYITYDPNYNYEDEEE 222
T + N D EE
Sbjct: 755 FIRPWCTSLR-----NIRDNEE 771
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 63.9 bits (155), Expect = 4e-10
Identities = 74/586 (12%), Positives = 169/586 (28%), Gaps = 95/586 (16%)
Query: 795 VQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNL---QLTIVALSHLVMSCNLQ 851
V + F + + + L L + +L + +
Sbjct: 64 VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 852 LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDD 911
L++ L ++ + F+ + + + ++
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS---SAVKAELRQYFRNLCSDDTP 178
Query: 912 ELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 971
+R F + + +++ + N + + V+ A
Sbjct: 179 MVRRAAASKLGEFAKVLELDNV--------------KSEIIPMFSNLASDEQDSVRLLAV 224
Query: 972 YTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL---- 1027
+IA+++ + + L+Q E + R +VA+ +L
Sbjct: 225 EACVNIAQLLPQEDLEALVMPTLRQA-----------AEDKSWRVRYMVADKFTELQKAV 273
Query: 1028 -TLIDPSNLLPRLQESLKSNSALMRTTHQSN-----QTFNVIIQRNDIHNHNEETSFIYS 1081
I ++L+P Q +K A +R + + + N I +
Sbjct: 274 GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ--------- 324
Query: 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVR 1141
+L + V D + + V+ ++ + L +
Sbjct: 325 ----ILPCIKELVSDANQHVKSALASVIMGLSPILGK---------DNTIEHLLPLFLAQ 371
Query: 1142 LKAADIDQEVKERAISCMGQIICNLG--DYLKSELPVCLPILLDRLRNEITRLTTVKALT 1199
LK D EV+ IS + + +G +S LP + + D RL ++ +
Sbjct: 372 LK--DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED--AKWRVRLAIIEYMP 427
Query: 1200 KIA----ASPLRIDLRPI----LTDGIP--------ILGSFLRKNQRALKLSTLLLLDTL 1243
+A L + L D + L + K + +T++
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487
Query: 1244 LVNYPSAISTEMLNKVTVELAPLVSESDL--HIAQLTLTLLTSIAKIQPNALVEPAAASI 1301
+ P+ + L+ + + H+ L + P A V A
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD-----PVANVRFNVAKS 542
Query: 1302 LPQIGRHTDLTSVAD-LKQVILNAFTPTSEEVKSAASYTLGSIAVG 1346
L +IG D +++ +K ++ +VK A L +++
Sbjct: 543 LQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
Score = 61.6 bits (149), Expect = 2e-09
Identities = 86/627 (13%), Positives = 193/627 (30%), Gaps = 120/627 (19%)
Query: 964 EEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAEC 1023
+++ + L +IA + + T + +P + + E+ +AE
Sbjct: 24 VQLRLNSIKKLSTIALALGVERT-------RSELLPFLTDTI-----YDEDEVLLALAEQ 71
Query: 1024 LGKLTLIDPSN-----LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSF 1078
LG T + LLP L+ ++R ++ I + +
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAV--ESLRAISHEHSPSD------- 122
Query: 1079 IYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCT 1138
+ + + L+ + GD F T+ L F ++S + + ++
Sbjct: 123 LEAHFVPLVKR--LAGGDWFTSRTSACGL----FSVCYPRVSSAVKAELRQYFRNLCS-- 174
Query: 1139 LVRLKAADIDQEVKERAISCMGQIICNLG-DYLKSELPVCLPILLDRL--RNEITRLTTV 1195
D V+ A S +G+ L D +KSE+ +P+ + + RL V
Sbjct: 175 -------DDTPMVRRAAASKLGEFAKVLELDNVKSEI---IPMFSNLASDEQDSVRLLAV 224
Query: 1196 KALTKIAASPLRIDLRPILTDGIP----------------ILGSFLRKNQRALKLSTLLL 1239
+A IA + DL ++ + + + + L+
Sbjct: 225 EACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP 284
Query: 1240 LDTLLVNYPSA----ISTEMLNKVTVELAPLVSESDL--HIAQLTLTLLTSIAKIQPNAL 1293
L+ A ++ + + L+ E+ + I L++ N
Sbjct: 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-----ANQH 339
Query: 1294 VEPAAASILPQIGRH-TDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA-VGNLQQY 1351
V+ A AS++ + ++ L + L EV+ L + V ++Q
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399
Query: 1352 VPFVLKEIE-----NQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1406
+L I + + + ++ + + GV + + ++ +
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG-----QLGVEFFDEKLNSLCMAWLVD-- 452
Query: 1407 CQEEGTRNVVAECLGKLTLIDPSN-----LLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461
R L KL ++P++ + L R T L +
Sbjct: 453 -HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV----- 506
Query: 1462 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGP 1521
L +D + ++ +LR+ D V+ K L
Sbjct: 507 ---------------LSEVCGQDITT------KHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 1522 LVNKVKEFQVETIVDALCSNMVSDKEQ 1548
+ + +++ V + + D++
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDV 572
Score = 61.6 bits (149), Expect = 2e-09
Identities = 72/640 (11%), Positives = 171/640 (26%), Gaps = 101/640 (15%)
Query: 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDIL 62
++ QLR S L T+ L G + L+ I +++V L + L
Sbjct: 21 NEDVQLRLNSIKKLSTIALAL--GVERT----RSELLPFLTDTIYDEDEV--LLALAEQL 72
Query: 63 SDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFL 122
+ G P + +L L + VR + + +L + + L
Sbjct: 73 GTFTTLVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 123 LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQA 182
++ L ++ + F+ + + + ++ +R
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVS---SAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 183 CEAFVQRCPKEITPH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
F + + I + L D D L E ++
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLAS-----DEQ----DSVRLLAVEACVNIAQLLPQED 238
Query: 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREEN 300
+ +D SW+VR A + + P K+ E
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAE 296
Query: 301 VKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSI 360
V++ H + S C + + ++ ++ + + +
Sbjct: 297 VRAAASHKVKEFCENL------------------SADCRENVIMSQILPCIKELVSDANQ 338
Query: 361 RTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGG--EGGGEGMDTEEE 418
+ +++ L L ++ L+P + + + E +
Sbjct: 339 HVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396
Query: 419 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG--DMYRLVSPPLIARFKE 476
+ +D W+VR A + + + +G ++ +A +
Sbjct: 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA----GQLGVEFFDEKLNSLCMAWLVD 452
Query: 477 REENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLR 536
++ L++ +++ +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGK----------------------EWAHATIIPKVLAMSG 490
Query: 537 EKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLL 596
+ + R L + L +D + ++ +LR+
Sbjct: 491 DPNYLHRMTTLFCINVLSEVCGQDIT----------------------TKHMLPTVLRMA 528
Query: 597 EDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTD 636
D V+ K L + + S L+ +++PIL
Sbjct: 529 GDPVANVRFNVAKSLQKIGP---ILDNSTLQSEVKPILEK 565
Score = 57.3 bits (138), Expect = 4e-08
Identities = 90/639 (14%), Positives = 198/639 (30%), Gaps = 106/639 (16%)
Query: 429 EYSDDDDMSWKVRRAAAKCLEAII------ATRRDLIGDMYRLVSPPLIARFKEREENVK 482
+ ++D ++R + K L I TR +L+ P + E+ V
Sbjct: 17 DELRNED--VQLRLNSIKKLSTIALALGVERTRSELL---------PFLTDTIYDEDEVL 65
Query: 483 ---SDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKS 539
++ + L+ G L P + E++ V + ++A+ +
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVR---DKAVESLRAISHEHSPSD 122
Query: 540 IRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 599
+ + L++ L R A L S ++ + ++ + L D
Sbjct: 123 LE--AHFVPLVKRLAGGDWFTSRTSACG-LFSVCYP---RVSSAVKAELRQYFRNLCSDD 176
Query: 600 NGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 659
V+ A LG K L + ++ IP+ + Q +++L +
Sbjct: 177 TPMVRRAAASKLGEFAKVLEL----------DNVKSEIIPMFSNLASDEQDSVRLLAVEA 226
Query: 660 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 719
+ P ++ L + + + T + K + +
Sbjct: 227 CVNIAQLLPQEDLEALVMPT---LRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT--- 280
Query: 720 SILPQVLQIAKSPLLQ--GAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALH 777
++P + K + AA + EF ++L + S++L + V
Sbjct: 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHV 340
Query: 778 KQAFHSLAKCVAALAITVQREALPVVEKFLKELKTN-KDDAHQVTIVALSHL-------- 828
K A LA + L+ + ++ +E L KD+ +V + +S+L
Sbjct: 341 KSA---LASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395
Query: 829 -------VMSCNLQL-----------TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKST 870
++ ++L I + L ++ + + ++ L +
Sbjct: 396 IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455
Query: 871 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 930
+ + + G ++P +L S + + R L + C +
Sbjct: 456 AIREAATSNLKKLVEKFG--KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513
Query: 931 EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSG 990
+IT + +L V+ + +L I I+
Sbjct: 514 DITTK--------------HMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL--------D 551
Query: 991 VAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL 1029
+ LQ V I +L + Q+ + E L L+L
Sbjct: 552 NSTLQSEVKPILEKL---TQDQDVDVKYFAQEALTVLSL 587
Score = 43.1 bits (101), Expect = 9e-04
Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 53 SVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL 112
+++ A L L+ +FG H I+ +L P R T+ ++ L C
Sbjct: 456 AIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513
Query: 113 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREED 172
+ TK + + + + + + I + V P++ K ++++D
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQD 571
Query: 173 DELREFCLQACEA 185
+++ F +A
Sbjct: 572 VDVKYFAQEALTV 584
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 63.7 bits (154), Expect = 4e-10
Identities = 73/570 (12%), Positives = 171/570 (30%), Gaps = 67/570 (11%)
Query: 433 DDDMSWKVRRAAAKCLEAIIATRRDLIGDM--YRLVSPPLIARFKEREENVKSDIFHAYM 490
+ S VR AA L + ++ + + + + + V++ F
Sbjct: 190 STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC 249
Query: 491 ALLKGTRTFSPLTPSDPN--------QMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRT 542
++ TF + P M + V ++ + S + + + + +
Sbjct: 250 KIMSKYYTF--MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF 307
Query: 543 RQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDD--SERKVVKMLLRLLEDKN 600
Q L ++S +L++ L + + +DD + L+L
Sbjct: 308 PQSPLQSYNFALSSIKDVV-----PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362
Query: 601 GEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLL 660
G L P+ + + + + + ++
Sbjct: 363 GN------HILEPVL-----------------------EFVEQNITADNWRNREAAVMAF 393
Query: 661 DTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK-IQPNALVEPAAA 719
+++ T +++ + L+++ L + + T + IA + + +
Sbjct: 394 GSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453
Query: 720 SILPQVLQ-IAKSPLLQGAALTSMLEFFKSLVLAELPGLS--FSELLNMLIAPVMTGTA- 775
++ L + P + +++ + L A + + L++ LI
Sbjct: 454 GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE 513
Query: 776 --LHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIV--ALSHLVMS 831
AF +L V TV + + + +L + A S +
Sbjct: 514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573
Query: 832 CNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRF 891
N+ + A+ S + L+ L S +A+ G F
Sbjct: 574 SNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF 633
Query: 892 AEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADL 951
+++E P +LK + D + + ++ + ++ + L
Sbjct: 634 EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAM--------MNVL 685
Query: 952 KQVILNAFTPTSEEVKSAASYTLGSIAEII 981
Q+I N E+K A G IA I
Sbjct: 686 AQMISN--PNARRELKPAVLSVFGDIASNI 713
Score = 59.1 bits (142), Expect = 1e-08
Identities = 81/681 (11%), Positives = 200/681 (29%), Gaps = 90/681 (13%)
Query: 537 EKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLL 596
E + + ++ + + + A+ + + + + +L+ ++
Sbjct: 126 ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185
Query: 597 -----EDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRA 651
+ + V+ A+ L + + R R L + ++ +
Sbjct: 186 QGAQSTETSKAVRLAALNALADSLIFIKN---NMEREGERNYL---MQVVCEATQAEDIE 239
Query: 652 LKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 711
++ + L ++ Y + + M + + + +A +T+ ++I +
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE---- 295
Query: 712 ALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVM 771
I ++ Q +SPL S ++ LLN+L
Sbjct: 296 -----EEIDIAYELAQFPQSPLQSYNFALSSIKDV------------VPNLLNLLTRQNE 338
Query: 772 TGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKD-DAHQVTIVALSHLVM 830
S C+ A L V +F+++ T + + ++A ++
Sbjct: 339 DPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398
Query: 831 SCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR 890
+ + + +L + T C I
Sbjct: 399 GPDKVQRT------------YYVHQALPSILNLMNDQSLQVKETT-AWCIGRIADSVAES 445
Query: 891 F--AEHIERVMPLILKYSREEDDELREFC---LQACEAFVQRCPKEITPHIQSIGRHTDL 945
+H+ V+ L ++ + E + P I ++
Sbjct: 446 IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPAL------ 499
Query: 946 TSVADLKQVILNAFTPTSEE-VKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQ 1004
+ +I A +E +++A L ++ E T A + FV Q
Sbjct: 500 -----VDGLIGAANRIDNEFNARASAFSALTTMVE--YATDTVAETSASISTFVMDKLGQ 552
Query: 1005 LFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVII 1064
E Q + L L + ++ + S++ ++++
Sbjct: 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE-------------PVADMLM 599
Query: 1065 QRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYK------------ITAEALLVLQQF 1112
++++FI ++ +S + AS+G F K + V
Sbjct: 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659
Query: 1113 VKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS 1172
V I +++ DF ++ + + + +E+K +S G I N+G
Sbjct: 660 VGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIP 719
Query: 1173 ELPVCLPILLDRLRNEITRLT 1193
L + + + + T
Sbjct: 720 YLNDIMALCVAAQNTKPENGT 740
Score = 57.1 bits (137), Expect = 5e-08
Identities = 94/761 (12%), Positives = 222/761 (29%), Gaps = 127/761 (16%)
Query: 253 DDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 312
+ V+RA+ L + + + + LIA + + S
Sbjct: 144 GAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR----- 198
Query: 313 LKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRE 372
L + N M++E + L++ + + + I + L +
Sbjct: 199 LAALNALADSLIFIKNNMEREG--------ERNYLMQVVCEATQAEDIEVQAAAFGCLCK 250
Query: 373 LVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSD 432
++ + P + + +T
Sbjct: 251 IMSKYYTFMKPYMEQALYALTIAT------------------------------------ 274
Query: 433 DDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 492
+ KV + I D+ E + +S + AL
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIA---------------YELAQFPQSPLQSYNFAL 319
Query: 493 LKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRE 552
L Q + + +S + ++ + L + +
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP---VLEFVEQ 376
Query: 553 LMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLG 612
+T+ + R A S + + + +L L+ D++ +V+ C+G
Sbjct: 377 NITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG 436
Query: 613 PLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIS 672
+ ++ + ID + L + L+ + + + + + L+ A
Sbjct: 437 RIADSVAES------IDPQQHLPGVVQACLIGLQDHPK-VATNCSWTIINLVEQLAEATP 489
Query: 673 TEMLNKVTVELAPLV-----SESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQ 727
+ + N + L+ +++ + + LT++ + + + +ASI V+
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA-ETSASISTFVMD 548
Query: 728 IAKSPLLQGAALTSMLEF--FKSLVLAELPGLS---------FSELLNMLIAPVMTGTAL 776
+ ++ + + L L L+ + +ML+
Sbjct: 549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608
Query: 777 HKQAF--HSLAKCVAALAITVQREALPVVEKFLKEL-KTNKDDAHQVTIVALSHLVMSCN 833
AF + ++ALA ++ + +E F L K V+I A+
Sbjct: 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVG------- 661
Query: 834 LQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNR-TYIQCFAAICRQAGHRFA 892
I +S+ + + +++ L + ++ + + + F I G F
Sbjct: 662 ---FIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFI 718
Query: 893 EHIERVMPL---ILKYSREEDDE--------LREFCLQACEAFVQ---RCPKEITPHIQS 938
++ +M L E + E L A V P+ + P++ +
Sbjct: 719 PYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGT 778
Query: 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAE 979
I + QV + + + AA +G IA
Sbjct: 779 I--------FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811
Score = 55.6 bits (133), Expect = 1e-07
Identities = 35/238 (14%), Positives = 81/238 (34%), Gaps = 20/238 (8%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
+ D + L+++ S L + + + ++ V + G +EK++ ++ +
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSS-VEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL---YTK 117
+S L + G + LL L+ V + ++ + S
Sbjct: 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDA 680
Query: 118 LIDFLLEGLTTNKSTSTNR-TYIQCFAAICRQAGHRFAEHIERVMPL---ILKYSREEDD 173
+++ L + ++ + + + F I G F ++ +M L E
Sbjct: 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGT 740
Query: 174 E--------LREFCLQACEAFVQ---RCPKEITPHIQSITELCLTYITYDPNYNYEDE 220
+ E L A V P+ + P++ +I + + + DP ED
Sbjct: 741 LEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQF-IAQVAEDPQLYSEDA 797
Score = 46.7 bits (110), Expect = 7e-05
Identities = 97/854 (11%), Positives = 254/854 (29%), Gaps = 105/854 (12%)
Query: 908 EEDDELREFC-LQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEV 966
E R L V + + Q + +K L A +
Sbjct: 52 NTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRI 111
Query: 967 KSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQE-EGTRNVVAECLG 1025
+AA+ + +IA+I P + + + ++ E + LG
Sbjct: 112 ANAAAQLIAAIADI-----------ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG 160
Query: 1026 KLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNV----IIQRNDIHNHNEETSFIYS 1081
+ + S A+++ + + V + D +
Sbjct: 161 YMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG 220
Query: 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTL-- 1139
+L+ V + ++ A A L + + P+
Sbjct: 221 ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF-------MKPYMEQALYALTIA 273
Query: 1140 --------VRLKAADIDQEVKERAISC------MGQIICNLGDYLKSELPVCLPILLDRL 1185
V + + E I Q ++ S + +P LL+ L
Sbjct: 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333
Query: 1186 RNEI---------TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLST 1236
+ ++ L A + L P+L + + + + +
Sbjct: 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVL----EFVEQNITADNWRNREAA 389
Query: 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK-IQPNALVE 1295
++ +++ T +++ + L+++ L + + T + IA + + +
Sbjct: 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449
Query: 1296 PAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFV 1355
++ L + E++ A + + + +
Sbjct: 450 QHLPGVVQACLIG--LQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI-GA 506
Query: 1356 LKEIENQPKRQYLLLHSLKEII-SWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN 1414
I+N+ + +L ++ T A + FV Q E Q
Sbjct: 507 ANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566
Query: 1415 VVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMAT 1474
+ L L + ++ + S++ + ++ + + + ++ +D F A
Sbjct: 567 QSLQELQSNILTVLAAVIRKSPSSVEPVADML----MGLFFRLLEKKDSAFIEDDVFYAI 622
Query: 1475 NDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETI 1534
+ L + L K K + LL+ L + V AV + + N ++E
Sbjct: 623 SALAASLGKGFEKYLE----TFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRY 677
Query: 1535 VDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPA 1594
DA+ + + + + N+ +K L+ + +
Sbjct: 678 SDAMMNVLAQ---------------------MISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1595 VFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVD-- 1652
F P+++ ++ + + E +D + + +A + ++ D+ +
Sbjct: 717 -FIPYLNDIMALCVAAQNTKPENGT---LEALDYQIKVLEAVLDAYVGIVAGLHDKPEAL 772
Query: 1653 ------MFEFLNHL--ESGLRDHYDIKMLTYLMLARLAQMTPAALLQRL---ERIVEPLR 1701
+F+F+ + + L ++ +A M P +++ + +++ ++
Sbjct: 773 FPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIK 832
Query: 1702 NTVTLKVKANSVKQ 1715
T + ++ + + K
Sbjct: 833 RTRSGQLFSQATKD 846
Score = 44.4 bits (104), Expect = 4e-04
Identities = 20/195 (10%), Positives = 52/195 (26%), Gaps = 18/195 (9%)
Query: 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKR--- 98
+ A + + + A L+ ++ + I T ++ +L +
Sbjct: 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTL 563
Query: 99 ---------------TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFA 143
+ A+ S + L+ L S +
Sbjct: 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623
Query: 144 AICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITE 203
A+ G F +++E P +LK + D + + ++ + ++
Sbjct: 624 ALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN 683
Query: 204 LCLTYITYDPNYNYE 218
+ I+
Sbjct: 684 VLAQMISNPNARREL 698
Score = 41.3 bits (96), Expect = 0.003
Identities = 79/755 (10%), Positives = 207/755 (27%), Gaps = 133/755 (17%)
Query: 113 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER--VMPLILKYSRE 170
LI + +T S + + A + ER +M ++ + ++
Sbjct: 176 SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA 235
Query: 171 EDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYN-----------YED 219
ED E++ + + + P+++ PN +
Sbjct: 236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295
Query: 220 EEEGLGGEGGG-------------EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAK 266
EE + E + + + NE +DDD W V +A
Sbjct: 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDD--WNVSMSAGA 353
Query: 267 CLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSD 326
CL+ + + V + + A+ +++ G
Sbjct: 354 CLQLFAQNCGN---HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ------ 404
Query: 327 PNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC------ 380
+ V + ++ + ++S++ ++ + + ++
Sbjct: 405 -------------RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451
Query: 381 LAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN-----EYSDDDD 435
L + A + + + E + ++ D
Sbjct: 452 LPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID 511
Query: 436 MSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKG 495
+ R +A L ++ D + + +S ++ + +
Sbjct: 512 NEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQ------------------- 552
Query: 496 TRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMT 555
++ + ++ + L + + +++ A+ + + L L+
Sbjct: 553 -----TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLE 607
Query: 556 SSDKDFR----FMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCL 611
D F F A + L + L K K + LL+ L + V AV +
Sbjct: 608 KKDSAFIEDDVFYAISALAASLGKGFEKYLE----TFSPYLLKALNQVDSPVSITAVGFI 663
Query: 612 GPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 671
+ +L + D R + +L + + P+ +
Sbjct: 664 ADISNSLEE--------DFRRYSDAMMNVLAQMISNP------------NARRELKPAVL 703
Query: 672 ST--EMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIA 729
S ++ + + + P +++ + + ++ ++L + I
Sbjct: 704 SVFGDIASNIGADFIPYLNDI-MALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIV 762
Query: 730 KSPLLQGAALTSMLEFFKSLV--LAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKC 787
+ AL + + +AE P L + A + A +
Sbjct: 763 AGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSED-------------ATSRAAVGLIGDI 809
Query: 788 VAALAITVQREAL--PVVEKFLKELKTNKDDAHQV 820
A ++ V ++K ++ + +
Sbjct: 810 AAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 58.1 bits (140), Expect = 5e-09
Identities = 44/290 (15%), Positives = 91/290 (31%), Gaps = 80/290 (27%)
Query: 344 VPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEG 403
+ + K +L EK R++ L +L +L+ P AL+ + V
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI------- 65
Query: 404 LGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY 463
D + + A KCL + +
Sbjct: 66 -----------------------------TKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96
Query: 464 RLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQ 523
P L+ +FKE++ NV + + A A+ ST
Sbjct: 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYA--------------------------STS 130
Query: 524 VPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDD 583
+ + +++ L K+ + + + +T + L+
Sbjct: 131 LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT------------------ALNKK 172
Query: 584 SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPI 633
+ + L++ L + + V++ + + LG L K + A +PL D+ P+
Sbjct: 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPL 222
Score = 42.3 bits (99), Expect = 8e-04
Identities = 39/233 (16%), Positives = 77/233 (33%), Gaps = 49/233 (21%)
Query: 1425 LIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKD 1484
L+DP ++L ++ + D++ R + L L
Sbjct: 6 LLDPVDILSKMPKDF-------------------YDKLEEKKWTLRKESLEVLEKLLTDH 46
Query: 1485 SIKLDDDSERKVVKMLLRLLE-DKNGEVQNLAVKCLGPLVNKVKEF---QVETIVDALCS 1540
KL++ +V L +++ D N + +A KCL L + + V +L
Sbjct: 47 P-KLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLE 105
Query: 1541 NMVSDKEQLRD---------ISSIGLKTVISVVY-CLGDRNSSSNMKIDTLAFTHTLLTT 1590
K + +S L+ + L ++N ++K +T F LT
Sbjct: 106 KFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNP--SVKSETALFIARALTR 163
Query: 1591 HPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTL 1643
P + + LL ++ K + +R ++ E + TL
Sbjct: 164 TQPTALNKKLLKLLTTSLV-------------KTLNEPDPTVRDSSAEALGTL 203
Score = 41.5 bits (97), Expect = 0.001
Identities = 20/198 (10%), Positives = 56/198 (28%), Gaps = 27/198 (13%)
Query: 1342 SIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQL 1401
+ G V + K I + + + A L
Sbjct: 48 KLENGEYGALVSALKKVITKDSNVV----LVAMAGKCLALLAKGLAKRFSNYASACVPSL 103
Query: 1402 FLHCECQEEGTRNVVAECLGKL-TLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISD 1460
+ ++ + E + + + ESL + + +++ + ++
Sbjct: 104 LEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTR 163
Query: 1461 QMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLG 1520
L +L K + L++ L + + V++ + + LG
Sbjct: 164 -----------TQPTALNKKLLK-----------LLTTSLVKTLNEPDPTVRDSSAEALG 201
Query: 1521 PLVNKVKEFQVETIVDAL 1538
L+ + + V ++ +
Sbjct: 202 TLIKLMGDKAVTPLLADV 219
Score = 40.0 bits (93), Expect = 0.004
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 25/154 (16%)
Query: 853 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDE 912
Y L+ L + +T + + +C A + + RF+ + +P +L+ +E+
Sbjct: 54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPN 113
Query: 913 LREFCLQACEAFVQRC-PKEITPHI----------------QSIGRHTDLTSVADLKQVI 955
+ +A +A + I I R T L + +
Sbjct: 114 VVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173
Query: 956 LNAFTP--------TSEEVKSAASYTLGSIAEII 981
L T V+ +++ LG++ +++
Sbjct: 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207
Score = 35.8 bits (82), Expect = 0.082
Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 28/146 (19%)
Query: 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 313
D + + A KCL + + P L+ +FKE++ NV + + A A+
Sbjct: 67 KDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126
Query: 314 KGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373
ST + + +++ L K+ + + +
Sbjct: 127 A--------------------------STSLEAQQESIVESLSNKNPSVKSETALFIARA 160
Query: 374 VQTL--PGCLAPSLPALIPDVTSVAE 397
+ L L +
Sbjct: 161 LTRTQPTALNKKLLKLLTTSLVKTLN 186
Score = 30.8 bits (69), Expect = 3.2
Identities = 19/204 (9%), Positives = 64/204 (31%), Gaps = 24/204 (11%)
Query: 1143 KAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIA 1202
K + +++ ++ + +++ + E + L + + + A +A
Sbjct: 23 KLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82
Query: 1203 ASP--LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVT 1260
L + +P L ++ + + + +D + + E + +
Sbjct: 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESL 142
Query: 1261 VELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQV 1320
P V + ++ + QP AL + + + + ++ +
Sbjct: 143 SNKNPSVKSETALF------IARALTRTQPTALNKKLLKLLTTSL-----VKTLNE---- 187
Query: 1321 ILNAFTPTSEEVKSAASYTLGSIA 1344
V+ +++ LG++
Sbjct: 188 -------PDPTVRDSSAEALGTLI 204
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 58.0 bits (139), Expect = 2e-08
Identities = 118/855 (13%), Positives = 238/855 (27%), Gaps = 136/855 (15%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS-NALAANVCRRITGKLSTAIEKQEDVSVQLEAL 59
+ ++ + S +E+P+ L + +T ++ L
Sbjct: 99 LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVT-------NPNSTEHMKESTL 151
Query: 60 DILSDLLSRF-GALLPSFHFVILTALLP--QLSSPRQAVRKRTIVALSHLVMSCNLQLYT 116
+ + + L ILTA++ + P V+ AL + +
Sbjct: 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211
Query: 117 KLIDFLLEGLTTNKSTSTN----RTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREED 172
+ + + + + +Q I ++ + I + + D
Sbjct: 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD 271
Query: 173 DELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEG 232
+ E LQ E + C +E+ I++ + Y +G
Sbjct: 272 ID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY------------AKG 317
Query: 233 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIA 292
+ + +DDD W +AA CL + D D+ V P +
Sbjct: 318 ALQYLVPILTQTLTKQDE-NDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKE 373
Query: 293 RFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQ 352
K + + A+ +L+G L V + L
Sbjct: 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQ-------------------LKPLVIQAMPTLI 414
Query: 353 CQLREKSIRTRQDCLALLRELVQTLPGC------LAPSLPALI------PDVTSVAEWDE 400
+++ S+ R + + + LP LAP L LI P V S W
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAF 474
Query: 401 EEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD---------DDMSWKVRRAAAKCLEAI 451
E E D ++ E + + D + E++
Sbjct: 475 SSLA--EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532
Query: 452 IATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMD 511
+ ++ D Y V M L+ S +++
Sbjct: 533 MEIVKNSAKDCYPAVQK----------------TTLVIMERLQQVLQMESHIQSTSDRIQ 576
Query: 512 QEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSD-KDFRFMATNDLM 570
D L +T L K + S L + + S ++ MA + L+
Sbjct: 577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLV 636
Query: 571 SELQKDSIKLDDDSERKVVKMLLRLLEDK-NGEVQNLAVKCLGPLFKALTKIAASPLRID 629
L + +K + L L++ +V AV +G L +AL +
Sbjct: 637 EVLGGEFLKYMEA----FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS--------N 684
Query: 630 LRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSE 689
+ P + + +L L + ++ S ++ + E +
Sbjct: 685 IIPFCDEVMQLLLENLGNEN---------VHRSVKPQILSVFG-DIALAIGGEFKKYLEV 734
Query: 690 SDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQG--AALTSMLEFFK 747
L L ++ Q + + L+ + G L E
Sbjct: 735 --------VLNTLQQASQAQVDKSDYDMVDYL--NELRESCLEAYTGIVQGLKGDQENVH 784
Query: 748 SLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREAL------P 801
V+ P + F + I + A + L ++ L P
Sbjct: 785 PDVMLVQPRVEF---ILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARP 841
Query: 802 VVEKFLKELKTNKDD 816
++ + L E + +K +
Sbjct: 842 MIHELLTEGRRSKTN 856
Score = 55.6 bits (133), Expect = 1e-07
Identities = 111/872 (12%), Positives = 253/872 (29%), Gaps = 127/872 (14%)
Query: 519 LLSTQVPSLVKALQCQLR--EKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKD 576
+P+ + L L S R ++ +TS D D + ++ Q+
Sbjct: 28 AAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK--------AQYQQR 79
Query: 577 SIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTD 636
+ +D ++ R+V +L L + + + + + IA + + ++ P +
Sbjct: 80 WLAIDANARREVKNYVLHTLGTETYRPSSAS--------QCVAGIACAEIPVNQWP---E 128
Query: 637 GIPILGSFLRK--NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV---SESD 691
IP L + + + +K STL + + + + N++ + + S+
Sbjct: 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188
Query: 692 LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLV- 750
T LL S+ + N E I+ V + + P + ++LV
Sbjct: 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV-----AALQNLVK 243
Query: 751 LAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKEL 810
+ L + + + K +A V E + + + +
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAM--KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301
Query: 811 KTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKST 870
+ + H A L ++ Q TK + +
Sbjct: 302 EQGRPPEHTSKFYAKGALQY--------------LVPILTQTLTKQDENDDDD-----DW 342
Query: 871 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRC-P 929
+ + C + H V+P I ++ + D R+ + A ++ P
Sbjct: 343 NPCKAAGVCLMLLATCCEDDIVPH---VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399
Query: 930 KEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTS 989
++ P + ++ S V+ A++T+G I E +
Sbjct: 400 SQLKPLVIQAM------------PTLIELMKDPSVVVRDTAAWTVGRICE---LLPEAAI 444
Query: 990 GVAQLQQFVPAIWAQLFLHCECQEEGTRNVV---------AECLGKLTLIDPSNLLPRLQ 1040
L + + L A+ L +
Sbjct: 445 NDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE 504
Query: 1041 ESLKSNSALMRT--THQSNQTFNVIIQRNDIHNHNEETSFIYSFYYF-----LLSPVIAS 1093
++ HQ+N + +I ++ + + L V+
Sbjct: 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM 564
Query: 1094 VGDNFYKITAEALLVLQQFVK--VIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEV 1151
LQ + + L D + + L ++ V
Sbjct: 565 ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGV 624
Query: 1152 KERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE---ITRLTTVKALTKIAASPLRI 1208
+E A+ + ++ LG + P L L+N L V + + + L+
Sbjct: 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA-LQS 683
Query: 1209 DLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS 1268
++ P + + +L L + ++ S ++ + E +
Sbjct: 684 NIIPFCDEVMQLLLENLGNEN---------VHRSVKPQILSVFG-DIALAIGGEFKKYLE 733
Query: 1269 ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPT 1328
L L ++ Q + + + + +L++ L A+T
Sbjct: 734 V--------VLNTLQQASQAQVDK-------------SDYDMVDYLNELRESCLEAYTGI 772
Query: 1329 SEEVKSAASYTLGSIAVGNLQQYVPFVLKEIE 1360
+ +K + +Q V F+L I+
Sbjct: 773 VQGLKGDQENVHPDVM--LVQPRVEFILSFID 802
Score = 32.9 bits (74), Expect = 1.4
Identities = 37/316 (11%), Positives = 93/316 (29%), Gaps = 14/316 (4%)
Query: 1436 QESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERK 1495
L + ++ V I + + + D +R A L+ +
Sbjct: 349 GVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408
Query: 1496 VVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSI 1555
+ L+ L++D + V++ A +G + + E + + L + E L +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGLSAEPRV 466
Query: 1556 GLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVIIIKTLIR 1615
+ ++++ D L++ + + P L
Sbjct: 467 ASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526
Query: 1616 EVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRV-DMFEFLNHLESGLRDHYDIKMLT 1674
V + A + ++ L +V M + ++ + +L
Sbjct: 527 SA-YESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 1675 YLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAAL 1734
+ L ++ LQ + ++ L Q ++ A+ AV+ L
Sbjct: 586 ATLQNVLRKVQHQDALQISDVVMASLLRMF----------QSTAGSGGVQEDALMAVSTL 635
Query: 1735 LTIQDADKNPALNDFV 1750
+ + + + F
Sbjct: 636 VEVLGGEFLKYMEAFK 651
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 47.9 bits (113), Expect = 1e-05
Identities = 16/156 (10%), Positives = 47/156 (30%), Gaps = 9/156 (5%)
Query: 52 VSVQLEALDILSDLLSRFGALLPSFHFVILTALLP----QLSSPRQAVRKRTIVALSHLV 107
+ ++ L++ ++ ++A +P + + +R ++ L
Sbjct: 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS 160
Query: 108 MSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY 167
K+ LL+ L +K+ + AG V + +
Sbjct: 161 DVVGPL---KMTPMLLDAL-KSKNARQRSECLLVIEYYITNAG-ISPLKSLSVEKTVAPF 215
Query: 168 SREEDDELREFCLQACEAFVQRCPKEITPHIQSITE 203
++D +R + A + ++ + +
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMAD 251
Score = 33.6 bits (76), Expect = 0.51
Identities = 26/236 (11%), Positives = 72/236 (30%), Gaps = 34/236 (14%)
Query: 1446 MRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE 1505
++T + K ++ Q+ D A + L+ L +S+ ++K
Sbjct: 39 LQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFF 97
Query: 1506 DKNGEVQNLAVKCLGPLVNKVK-------EFQVETIVDALCSNMVSDKEQLRDISSIGLK 1558
+ N ++ +V ++ + +V V L K+ +R +
Sbjct: 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVN 157
Query: 1559 TVISV--------VYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVIII 1610
+ V + ++ ++ + + L +T + + +
Sbjct: 158 VLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPL--------KSLSVE 209
Query: 1611 KTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRD 1666
KT+ D +++R AA + D++ ++ + +
Sbjct: 210 KTVA--------PFVGDKDVNVRNAAINVLVACFKFEGDQM--WKAAGRMADKDKS 255
Score = 31.7 bits (71), Expect = 2.2
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 54/182 (29%)
Query: 442 RAAAKCLEAIIATRRDLIGDMYRLVS-------PPLIARFKEREENVKSDIFHAYMALLK 494
A K LE + + P L+ + E ++N+++ + L
Sbjct: 102 AALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD 161
Query: 495 GTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELM 554
V P L+ AL+ K+ R R +CL ++ +
Sbjct: 162 ----------------------VVGPLKMTPMLLDALKS----KNARQRSECLLVIEYYI 195
Query: 555 TSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPL 614
T++ + V K + + DK+ V+N A+ L
Sbjct: 196 TNA---------------------GISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234
Query: 615 FK 616
FK
Sbjct: 235 FK 236
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 45.6 bits (107), Expect = 1e-04
Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 22/238 (9%)
Query: 49 QEDVSVQLEALDILSDLLSRF-GALLPSFHFVILTALL--PQLSSPRQAVRKRTIVALSH 105
++ L+ + + L ILTA++ + P V+ AL +
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200
Query: 106 LVMSCNLQL-YTKLIDFLLEGL---TTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 161
+ F+++ + T T +Q I ++ +
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260
Query: 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEE 221
I + + D + E LQ E + C +E+ I++ + Y
Sbjct: 261 FAITIEAMKSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA--- 315
Query: 222 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLI 279
+ + +DDD W +AA CL + D I
Sbjct: 316 ----------KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363
Score = 41.0 bits (95), Expect = 0.004
Identities = 50/336 (14%), Positives = 109/336 (32%), Gaps = 41/336 (12%)
Query: 688 SESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSP-------LLQGAALT 740
S H+ + TL + I + ++ + IL ++Q + L AL
Sbjct: 140 PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199
Query: 741 SMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREAL 800
+ LEF K+ E +++ T A +L K ++ ++
Sbjct: 200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR--VAALQNLVKIMSLYYQYMETYMG 257
Query: 801 PVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALS-----------HLVMSCN 849
P + ++ K D +V + + C+ ++ + + H
Sbjct: 258 PALFAIT--IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315
Query: 850 LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAIC--RQAGHRFAEHI-ERVMPLILKYS 906
L+ L + LT + + C AA + I V+P I ++
Sbjct: 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375
Query: 907 REEDDELREFCLQACEAFVQRC-PKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEE 965
+ D R+ + A ++ P ++ P + ++ S
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM------------PTLIELMKDPSVV 423
Query: 966 VKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAI 1001
V+ A++T+G I E++ + + L + +
Sbjct: 424 VRDTAAWTVGRICELLPEAAINDV---YLAPLLQCL 456
Score = 33.3 bits (75), Expect = 0.88
Identities = 43/395 (10%), Positives = 112/395 (28%), Gaps = 67/395 (16%)
Query: 249 EYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHA 308
+ + + ++ + + + I +D+ + + S ++ + +
Sbjct: 135 ANVTNPNSTEHMKESTLEAIGYIC---QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 191
Query: 309 YMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLA 368
A T D+E ++ +++ + + R R L
Sbjct: 192 LAA----TNALLNSLEFTKANFDKE--------SERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 369 LLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN 428
L +++ + + + +T A M ++ ++
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEA----------------MKSDIDE--------- 274
Query: 429 EYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHA 488
V + + DL + E+ +
Sbjct: 275 -----------VALQGIEFWSNVCDEEMDLAIEASEAA-----------EQGRPPEHTSK 312
Query: 489 YMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLA 548
+ A LT + Q + +D + L + + L
Sbjct: 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH---VLP 369
Query: 549 LLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAV 608
++E + + D +R A L+ + + L+ L++D + V++ A
Sbjct: 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429
Query: 609 KCLGPLFKALTKIAASPLRIDLRPILTDGIPILGS 643
+G + + L + A + + L P+L I L +
Sbjct: 430 WTVGRICELLPEAAINDVY--LAPLLQCLIEGLSA 462
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 44.3 bits (104), Expect = 2e-04
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 37/188 (19%)
Query: 433 DDDMSWKVRRAAAKCLEAIIAT--RRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 490
D + + AA+ +E I D LV PL+ R KE++ +V I A +
Sbjct: 70 QKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALL 129
Query: 491 ALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALL 550
+ + S + ++K + ++ K+ + R +C L
Sbjct: 130 TIC-------------------KYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLF 170
Query: 551 RELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKC 610
M D S LQ+ +VV ++++++ D ++ + +
Sbjct: 171 NASMKE---------EKDGYSTLQRYLKD-------EVVPIVIQIVNDTQPAIRTIGFES 214
Query: 611 LGPLFKAL 618
L K
Sbjct: 215 FAILIKIF 222
Score = 36.2 bits (83), Expect = 0.063
Identities = 27/234 (11%), Positives = 83/234 (35%), Gaps = 35/234 (14%)
Query: 1425 LIDPSNLLPRLQESLKSNSALM----RTTVLTAVKFTI---SDQMTSSDKDFRFMATNDL 1477
++ +L +L + + R L ++ + ++ S+ +++ ++L
Sbjct: 7 MLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-----SNL 61
Query: 1478 MSELQKDSIKLDDDSERKVVKMLLRLLED------KNGEVQNLAVKCLGPLVNKVKEFQV 1531
+ + D+ + V + + +E G ++ PL+++ KE +
Sbjct: 62 LGIYGH---IIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKE-KK 117
Query: 1532 ETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTH 1591
++++A+ +++ + ++S G + ++ + ++++ + +
Sbjct: 118 PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177
Query: 1592 PPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGL-DIRKAAFECMYTLL 1644
+ + L EV + V+D IR FE L+
Sbjct: 178 KD-----------GYSTLQRYLKDEV-VPIVIQIVNDTQPAIRTIGFESFAILI 219
Score = 33.5 bits (76), Expect = 0.55
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 21/145 (14%)
Query: 253 DDDMSWKVRRAAAKCLEAIIAT--RRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 310
D + + AA+ +E I D LV PL+ R KE++ +V I A +
Sbjct: 70 QKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALL 129
Query: 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALL 370
+ K + S + ++K + ++ K+ + R +C L
Sbjct: 130 TICKYYDPLAS-------------------SGRNEDMLKDILEHMKHKTPQIRMECTQLF 170
Query: 371 RELVQTLPGCLAPSLPALIPDVTSV 395
++ + L +V +
Sbjct: 171 NASMKEEKDGYSTLQRYLKDEVVPI 195
Score = 30.8 bits (69), Expect = 3.3
Identities = 13/113 (11%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 1426 IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDS 1485
++L + E +K + +R ++ + D S LQ+
Sbjct: 142 GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE-------------EKDGYSTLQRYL 188
Query: 1486 IKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDAL 1538
+VV ++++++ D ++ + + L+ ++ L
Sbjct: 189 KD-------EVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 43.9 bits (103), Expect = 3e-04
Identities = 32/268 (11%), Positives = 77/268 (28%), Gaps = 36/268 (13%)
Query: 767 IAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALS 826
+ ++ + L + + TV + A+ ++ K + + + L
Sbjct: 20 LEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK 79
Query: 827 HLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ 886
Q A + + +L+ ++ L N +T I A+
Sbjct: 80 KSEAIPLTQEIAKAFGQMA-----KEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEI 134
Query: 887 AGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLT 946
A + ++ + ++ E + L EA + K + P +
Sbjct: 135 AKAN-PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLP--------- 184
Query: 947 SVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLF 1006
I+N E V+++A L +A + + + +
Sbjct: 185 -------RIINLLHDGDEIVRASAVEALVHLATLND-------------KLRKVV-IKRL 223
Query: 1007 LHCECQEEGTRNVVAECLGKLTLIDPSN 1034
V E + +L L++ +
Sbjct: 224 EELNDTSSLVNKTVKEGISRLLLLEGHS 251
Score = 41.6 bits (97), Expect = 0.001
Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 22/199 (11%)
Query: 434 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493
DD W V + A + I TR DL + L + K+ E
Sbjct: 42 DDDLWTVVKNAISIIMVIAKTREDLYEP----MLKKLFSLLKKSEAIP---------LTQ 88
Query: 494 KGTRTFSPLTPSDPNQMDQEDSP-VCLLSTQVPSLVKALQCQLRE---KSIRTRQDCLAL 549
+ + F + P + + L E + +
Sbjct: 89 EIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRD 148
Query: 550 LRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVK 609
+++S +++ + A N + + ++S K + ++ LL D + V+ AV+
Sbjct: 149 FMSMLSSKNREDKLTALN-FIEAMGENSFKYV----NPFLPRIINLLHDGDEIVRASAVE 203
Query: 610 CLGPLFKALTKIAASPLRI 628
L L K+ ++
Sbjct: 204 ALVHLATLNDKLRKVVIKR 222
Score = 41.2 bits (96), Expect = 0.002
Identities = 34/244 (13%), Positives = 80/244 (32%), Gaps = 36/244 (14%)
Query: 1321 ILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQ 1380
++ V A + IA Y P + K LL S ++ +
Sbjct: 37 LIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFS-------LLKKSEAIPLTQE 89
Query: 1381 STSTSG--VAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQES 1438
G + + V ++ LF + +E T+ V+ L ++ +P + +++
Sbjct: 90 IAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRD- 148
Query: 1439 LKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVK 1498
++S +++ + A N + + ++S K +
Sbjct: 149 -------------------FMSMLSSKNREDKLTALN-FIEAMGENSFKYV----NPFLP 184
Query: 1499 MLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLK 1558
++ LL D + V+ AV+ L L + + +V + + G+
Sbjct: 185 RIINLLHDGDEIVRASAVEALVHLATLNDKLR--KVVIKRLEELNDTSSLVNKTVKEGIS 242
Query: 1559 TVIS 1562
++
Sbjct: 243 RLLL 246
Score = 39.3 bits (91), Expect = 0.007
Identities = 39/240 (16%), Positives = 70/240 (29%), Gaps = 46/240 (19%)
Query: 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 313
DD W V + A + I TR DL + L + K+ E
Sbjct: 42 DDDLWTVVKNAISIIMVIAKTREDLYEP----MLKKLFSLLKKSEAIP---------LTQ 88
Query: 314 KGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373
+ + F + P V S++ L R +T+ + L E+
Sbjct: 89 EIAKAFGQMAKEKPE--------------LVKSMIPVLFANYRIGDEKTKINVSYALEEI 134
Query: 374 VQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD 433
+ P +A + + ++S D+ L + E GE+ + N +
Sbjct: 135 AKANPMLMASIVRDFMSMLSSKNREDKLTAL---------NFIEAMGENSFKYVNPFLPR 185
Query: 434 -----DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHA 488
D VR +A + L + L V + + V +
Sbjct: 186 IINLLHDGDEIVRASAVEALVHLATLNDKLRK-----VVIKRLEELNDTSSLVNKTVKEG 240
Score = 33.5 bits (76), Expect = 0.55
Identities = 23/213 (10%), Positives = 69/213 (32%), Gaps = 14/213 (6%)
Query: 1218 IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQL 1277
I I+ + + + +L L + + + ++ + E + +
Sbjct: 53 ISIIMVIAKTREDLYEP----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSM 108
Query: 1278 TLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 1337
L + + + + L +I + +A + + ++ + + E K A
Sbjct: 109 IPVLFANYR--IGDEKTKINVSYALEEIAKANP-MLMASIVRDFMSMLSSKNREDKLTAL 165
Query: 1338 YTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAI 1397
+ ++ + + PF+ P+ LL + + + + +A L + +
Sbjct: 166 NFIEAMGENSFKYVNPFL-------PRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV 218
Query: 1398 WAQLFLHCECQEEGTRNVVAECLGKLTLIDPSN 1430
+ V E + +L L++ +
Sbjct: 219 VIKRLEELNDTSSLVNKTVKEGISRLLLLEGHS 251
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 42.2 bits (99), Expect = 0.001
Identities = 88/570 (15%), Positives = 188/570 (32%), Gaps = 96/570 (16%)
Query: 528 VKALQCQLREKSIRTRQDCLA-LLRELMTSSDKDFRFMATNDLMSELQKDSIK------- 579
A++ RE+ R +A LL M F + L++ QK + K
Sbjct: 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIAS-QKFTDKRIGYLGA 94
Query: 580 ---LDDDSE--RKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPIL 634
LD+ + + + L VQ LA+ LG + + L ++ +L
Sbjct: 95 MLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLL 151
Query: 635 TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHI 694
+LRK L ++ P E++ L++E + +
Sbjct: 152 KTSNS----YLRKK-------AALCAVHVIRKVP-----ELMEMFLPATKNLLNEKNHGV 195
Query: 695 AQLTLTLLTSIAKIQPNALVE-----PAAASILPQVLQIAKSPLLQGAALTS------ML 743
++ LLT + + P+ L P IL ++ SP + ++ +L
Sbjct: 196 LHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRIL 255
Query: 744 EFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVV 803
+ L + SE +N ++A V T T K +++ + ++ E
Sbjct: 256 RLLRILGRNDDD---SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE----- 307
Query: 804 EKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHL--VMSCNLQLYTKLIDFLL 861
L+ L N L +++ + + VAL+ L + + + ++
Sbjct: 308 -SGLRVLAINI----------LGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIV 356
Query: 862 EGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQAC 921
+ L + S R ++ A+ +I +M +L + + E + C
Sbjct: 357 DCLK-DLDVSIKRRAMELSFALVNG------NNIRGMMKELLYFLDSCEPEFKADCASGI 409
Query: 922 EAFVQRCPKEITPHIQSI-------GRHTDLTSVADLKQVILNAF--------------- 959
++ HI +I G + +V +L Q+I N+
Sbjct: 410 FLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAIL 469
Query: 960 -TPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN 1018
+ + + A++ +G +++ Q+ + + L TR
Sbjct: 470 GDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRG 529
Query: 1019 VVAECLGKLTLIDPSNLLPRLQESLKSNSA 1048
+ KL+ + R+++ + +
Sbjct: 530 YALTAIMKLSTRFTC-TVNRIKKVVSIYGS 558
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 0.004
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 15/41 (36%)
Query: 1718 EKQDELKR--SAMRAVAALLTIQDADKNPAL--NDFVATIK 1754
EKQ LK+ ++++ A D PAL AT++
Sbjct: 18 EKQ-ALKKLQASLKLYAD-------DSAPALAIK---ATME 47
Score = 31.8 bits (71), Expect = 0.95
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 12/32 (37%)
Query: 1432 LPRLQESLK-----SNSALMRTTVLTAVKFTI 1458
L +LQ SLK S AL A+K T+
Sbjct: 22 LKKLQASLKLYADDSAPAL-------AIKATM 46
Score = 30.3 bits (67), Expect = 3.5
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 13/34 (38%)
Query: 357 EK-SIRTRQDCLALLRELVQTLPGCLAP-SLPAL 388
EK +++ Q L L A S PAL
Sbjct: 18 EKQALKKLQASLKLY-----------ADDSAPAL 40
Score = 29.5 bits (65), Expect = 6.0
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 24/44 (54%)
Query: 645 LRKNQRALKLSTLLLLDTLLVNY-----PS-AISTEMLNKVTVE 682
L+K Q +LKL Y P+ AI K T+E
Sbjct: 22 LKKLQASLKL------------YADDSAPALAI------KATME 47
Score = 29.5 bits (65), Expect = 6.0
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 24/44 (54%)
Query: 1225 LRKNQRALKLSTLLLLDTLLVNY-----PS-AISTEMLNKVTVE 1262
L+K Q +LKL Y P+ AI K T+E
Sbjct: 22 LKKLQASLKL------------YADDSAPALAI------KATME 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 39.3 bits (92), Expect = 0.006
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 36/193 (18%)
Query: 434 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493
D S+ VRRAAA L IGD PLI K+ + V+ A + +
Sbjct: 29 QDDSYYVRRAAAYALGK--------IGD--ERAVEPLIKALKDEDAWVRRAAADA-LGQI 77
Query: 494 KGTRTFSPLTP--SDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTR-------- 543
R PL D + ++ + V L V+ L L+++ R
Sbjct: 78 GDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALG 137
Query: 544 ----QDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 599
+ + L + + D R A + L ++ + +V + +L E
Sbjct: 138 EIGDERAVEPLIKALKDEDGWVRQSAADALG--------EIGGE---RVRAAMEKLAETG 186
Query: 600 NGEVQNLAVKCLG 612
G + +AV L
Sbjct: 187 TGFARKVAVNYLE 199
Score = 31.6 bits (72), Expect = 1.6
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 524 VPSLVKALQ---CQLREKSIRT-----RQDCLALLRELMTSSDKDFRFMATNDLMSELQK 575
V +K LQ +R + + + L + + D R A + L
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL------ 74
Query: 576 DSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLG 612
++ D+ + V+ L++ L+D++G V+ A LG
Sbjct: 75 --GQIGDE---RAVEPLIKALKDEDGWVRQSAAVALG 106
Score = 29.6 bits (67), Expect = 6.7
Identities = 43/208 (20%), Positives = 67/208 (32%), Gaps = 45/208 (21%)
Query: 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 313
D S+ VRRAAA L IGD PLI K+ + V+ A + +
Sbjct: 29 QDDSYYVRRAAAYALGK--------IGD--ERAVEPLIKALKDEDAWVRRAAADA-LGQI 77
Query: 314 KGTRTFSPLTP--SDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLR 371
R PL D + ++ + + L V+ L L+++ R L
Sbjct: 78 GDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALG 137
Query: 372 ELVQTLPGCLAPSLPALIPDVTSVAEWDEE--------EGLGGEGGGEGMDTEEEDGEDE 423
E+ ++ LI A DE+ + LG GG E
Sbjct: 138 EIGD------ERAVEPLIK-----ALKDEDGWVRQSAADALGEIGGERVRAAME------ 180
Query: 424 GEDDNEYSDDDDMSWKVRRAAAKCLEAI 451
+ ++ R+ A LE
Sbjct: 181 -----KLAETGT--GFARKVAVNYLETH 201
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 39.6 bits (92), Expect = 0.008
Identities = 43/205 (20%), Positives = 78/205 (38%), Gaps = 9/205 (4%)
Query: 548 ALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE-DKNGEVQNL 606
L+ + + R+ A + + Q + + ++ LLRLL+ D V+
Sbjct: 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 144
Query: 607 AVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 666
A+ + L + LR+D G +L +++ + LK+ + LL LLV
Sbjct: 145 ALFAISCLVREQEAGLLQFLRLD-------GFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197
Query: 667 YPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASI-LPQV 725
+P T + +L LV + L L S+ P + E + L ++
Sbjct: 198 HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL 257
Query: 726 LQIAKSPLLQGAALTSMLEFFKSLV 750
L+ L Q LEF + L+
Sbjct: 258 LRHRCQLLQQHEEYQEELEFCEKLL 282
Score = 33.5 bits (76), Expect = 0.55
Identities = 23/191 (12%), Positives = 61/191 (31%), Gaps = 8/191 (4%)
Query: 543 RQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE 602
Q E ++D+ R A L + D + ++ R LE
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 603 VQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQR-ALKLSTLLLLD 661
++ A + +G + + I L + L L ++ +++ L +
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLG-------LGALRKLLRLLDRDACDTVRVKALFAIS 150
Query: 662 TLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASI 721
L+ + + + L + + + + LL ++ P + +
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210
Query: 722 LPQVLQIAKSP 732
+ Q++ + ++
Sbjct: 211 VQQLVALVRTE 221
Score = 33.5 bits (76), Expect = 0.60
Identities = 11/72 (15%), Positives = 24/72 (33%)
Query: 543 RQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE 602
R D ++L M + + + L + L +V+ L+ L+ ++
Sbjct: 165 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSP 224
Query: 603 VQNLAVKCLGPL 614
+ L L
Sbjct: 225 FHEHVLGALCSL 236
Score = 33.1 bits (75), Expect = 0.83
Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 4/161 (2%)
Query: 1139 LVRLKAADIDQEVKERAISCMGQIICNLGD----YLKSELPVCLPILLDRLRNEITRLTT 1194
LV ++ RA +G N+ L L LLDR + R+
Sbjct: 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 145
Query: 1195 VKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTE 1254
+ A++ + L+ + DG +L +++ + LK+ + LL LLV +P T
Sbjct: 146 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205
Query: 1255 MLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVE 1295
+ +L LV + L L S+ P + E
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE 246
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 38.4 bits (90), Expect = 0.009
Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 36/193 (18%)
Query: 434 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493
D S+ VRRAAA L I R + PLI K+ + V+ A + +
Sbjct: 24 QDDSYYVRRAAAYAL-GKIGDERAV---------EPLIKALKDEDAWVRRAAADA-LGQI 72
Query: 494 KGTRTFSPLTP--SDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCL-AL- 549
R PL D + ++ + V L V+ L L+++ R AL
Sbjct: 73 GDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALG 132
Query: 550 ----------LRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 599
L + + D R A + L ++ + +V + +L E
Sbjct: 133 EIGDERAVEPLIKALKDEDGWVRQSAADALG--------EIGGE---RVRAAMEKLAETG 181
Query: 600 NGEVQNLAVKCLG 612
G + +AV L
Sbjct: 182 TGFARKVAVNYLE 194
Score = 30.7 bits (70), Expect = 2.8
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 524 VPSLVKALQ---CQLREKSIRT-----RQDCLALLRELMTSSDKDFRFMATNDLMSELQK 575
V +K LQ +R + + + L + + D R A + L
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL------ 69
Query: 576 DSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLG 612
++ D+ + V+ L++ L+D++G V+ A LG
Sbjct: 70 --GQIGDE---RAVEPLIKALKDEDGWVRQSAAVALG 101
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 38.1 bits (88), Expect = 0.029
Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 17/220 (7%)
Query: 538 KSIRTRQDCLALLRELMTSSDKDFRFMATNDL--MSELQKDSIKLDDDSERKVVKMLLRL 595
+ + L L L+ +D + + + +++ + I++ VV L++L
Sbjct: 225 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG--VVPQLVKL 282
Query: 596 LEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLS 655
L + A++ +G I + I + + S L + ++
Sbjct: 283 LGATELPIVTPALRAIG-------NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335
Query: 656 TLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKI----QPN 711
+ + I + + + L ++S++D + +T+ Q
Sbjct: 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395
Query: 712 ALVEPAAASILPQVLQIAKSPLLQGA--ALTSMLEFFKSL 749
LV L +L + ++Q A++++ + + L
Sbjct: 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435
Score = 37.7 bits (87), Expect = 0.036
Identities = 49/423 (11%), Positives = 118/423 (27%), Gaps = 70/423 (16%)
Query: 1148 DQEVKERAISCMGQIICNLGDYLKSELPVC--LPILLDRLR---NEITRLTTVKALTKIA 1202
+ E + +A +++ + +P + L + + ALT IA
Sbjct: 70 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 129
Query: 1203 ASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVE 1262
+ + IP S L + + L + + + + +
Sbjct: 130 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDP 189
Query: 1263 LAPLVSESD--------LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSV 1314
L L++ D L TL+ L P L ++ H D +
Sbjct: 190 LLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249
Query: 1315 AD--------------LKQVILNA---------FTPTSEEVKSAASYTLGSIAVGNLQQ- 1350
AD ++++ T + + A +G+I G +Q
Sbjct: 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 309
Query: 1351 -------YVPFVLKEIENQPKR-QYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLF 1402
+ + N Q ++ I + + V +
Sbjct: 310 QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369
Query: 1403 LHCECQEEGTRNVVAECLG----KLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVK--F 1456
+ Q+E + G ++ + ++ L L + + +L A+ F
Sbjct: 370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429
Query: 1457 TISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAV 1516
++++ ++K + + +++ L +N V ++
Sbjct: 430 QAAEKLGETEKLSIMIEECGGLDKIE-------------------ALQRHENESVYKASL 470
Query: 1517 KCL 1519
+
Sbjct: 471 NLI 473
Score = 36.5 bits (84), Expect = 0.095
Identities = 60/458 (13%), Positives = 137/458 (29%), Gaps = 60/458 (13%)
Query: 503 TPSDPNQMDQEDSPVCLLSTQVPSLVKALQ-----------CQLREKSIRTRQDCL---- 547
T D M S ++ V +VK + R+ R +Q +
Sbjct: 38 TDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII 97
Query: 548 ------ALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNG 601
+ L + +F + L + S + + + + LL +
Sbjct: 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 157
Query: 602 EVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQR-----ALKLST 656
+ AV LG + DL I I L + L +
Sbjct: 158 HISEQAVWALGNI------AGDGSAFRDLV-IKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 657 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEP 716
L L N A + + ++ L L+ +D + + ++ + +
Sbjct: 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV 270
Query: 717 AAASILPQVLQIAKSP--LLQGAALTSMLEFFKS-----LVLAELPGLSFSELLNMLIAP 769
++PQ++++ + + AL ++ + + L+ ++L P
Sbjct: 271 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV--FPSLLTNP 328
Query: 770 VMTGTALHKQAFHSLAKCVAALAITVQR-EALPVVEKFLKELKTNKDDAHQVTIVALSHL 828
T + K+A +++ A +Q+ +V + L + A+++
Sbjct: 329 K---TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 829 VMSCNLQL--------TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCF 880
++ I L +L+ + + ++ ++D + +
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445
Query: 881 ------AAICRQAGHRFAEHIERVMPLILKYSREEDDE 912
I H + + LI KY E++E
Sbjct: 446 EECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE 483
Score = 34.2 bits (78), Expect = 0.49
Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 10/152 (6%)
Query: 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVILTALLPQLSSPRQAVRKRT 99
K + + K + +Q E+ L+++ S + + A + L+SP + ++
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163
Query: 100 IVALSHLVMSC--------NLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR-QAG 150
+ AL ++ L+ L + + R + +CR +
Sbjct: 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 223
Query: 151 HRFAEHIERVMPLILKYSREEDDELREFCLQA 182
+ +E+++P +++ D E+ A
Sbjct: 224 APPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255
Score = 30.4 bits (68), Expect = 7.3
Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 50 EDVSVQLEALDILSDLLSRFGALLPSFHFV-ILTALLPQLSSPRQAVRKRTIVALSHLVM 108
++ + AL + ++++ L L++P+ ++K +S++
Sbjct: 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345
Query: 109 SCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER-----VMPL 163
Q+ + L+ L S + +T + AI E I ++
Sbjct: 346 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP 405
Query: 164 ILKYSREEDDELREFCLQACEAFVQRCPK 192
++ +D ++ + L A Q K
Sbjct: 406 LMNLLSAKDTKIIQVILDAISNIFQAAEK 434
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 37.9 bits (88), Expect = 0.031
Identities = 59/408 (14%), Positives = 123/408 (30%), Gaps = 76/408 (18%)
Query: 548 ALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLA 607
+ L + +F + L + +S++ + V + + LL + +VQ A
Sbjct: 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127
Query: 608 VKCLGPLFKALTKIAA-SPLRIDLRPILTDG-IPILGSFLRKNQRALKLSTLL-LLDTLL 664
V LG IA S + D +L +P L K R + L L
Sbjct: 128 VWALG-------NIAGDSTMCRDY--VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178
Query: 665 VNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQ 724
++ L+ L+ SD + L+ ++ + + A + +
Sbjct: 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRR 238
Query: 725 VLQIAKSP--LLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFH 782
++++ + AL + ++TG + Q
Sbjct: 239 LVELLMHNDYKVVSPALR-------------------------AVGNIVTGDDIQTQVI- 272
Query: 783 SLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALS 842
+ AL + L + K+ + +S++ Q+ V
Sbjct: 273 ------------LNCSALQSLLHL---LSSPKESIKKEACWTISNITAGNRAQIQTV--- 314
Query: 843 HLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERV---- 898
+ ++ LI L T+ RT + AI AE I+ +
Sbjct: 315 -----IDANIFPALISIL--------QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELG 361
Query: 899 -MPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDL 945
+ + D ++ + L E ++ +E + I + L
Sbjct: 362 CIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCAL 409
Score = 37.6 bits (87), Expect = 0.036
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 13/182 (7%)
Query: 32 ANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVILTALLPQLSS 90
A VCRR+ L D V AL + ++++ + L +LL LSS
Sbjct: 233 AGVCRRLVELLMH-----NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287
Query: 91 PRQAVRKRTIVALSHLVMSCNLQLYTKLIDF-LLEGLTTNKSTSTNRTYIQCFAAICRQA 149
P+++++K +S++ + N +ID + L + T+ RT + AI
Sbjct: 288 PKESIKKEACWTISNIT-AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346
Query: 150 GHRFAEHIERV-----MPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITEL 204
AE I+ + + + D ++ + L E ++ +E + I
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPY 406
Query: 205 CL 206
C
Sbjct: 407 CA 408
Score = 36.0 bits (83), Expect = 0.12
Identities = 21/152 (13%), Positives = 58/152 (38%), Gaps = 9/152 (5%)
Query: 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFV-ILTALLPQLSSPRQAVRKRT 99
+ ++++E+ ++Q E+ +L+++ S + + LSS + V+++
Sbjct: 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127
Query: 100 IVALSHLVMSC----NLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR-FA 154
+ AL ++ + L ++ LL+ + + R + + +CR
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187
Query: 155 EHIERVMPLILKYSREEDDELREFCLQACEAF 186
+ + ++ D ++ AC A
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLA---DACWAL 216
Score = 36.0 bits (83), Expect = 0.12
Identities = 55/424 (12%), Positives = 131/424 (30%), Gaps = 94/424 (22%)
Query: 1145 ADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIA-- 1202
+ ++ ++ G I ++ + + S+ + +L+ + K+
Sbjct: 4 GFHEAQINNMEMAPGGVITSDMIEMIFSK-------------SPEQQLSATQKFRKLLSK 50
Query: 1203 ASPLRIDLRPILTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEMLNKVTV 1261
ID + FL++ + L+ + +L T + + S + ++ V
Sbjct: 51 EPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVL-TNIASGNSLQTRIVIQAGAV 109
Query: 1262 E-LAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQV 1320
L+S + + + L +IA +ILP + + +
Sbjct: 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL--------LQLFSK- 160
Query: 1321 ILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYL--LLHSLKEIIS 1378
+ A + L ++ G P+ + L+ L ++
Sbjct: 161 ------QNRLTMTRNAVWALSNLCRGK------------SPPPEFAKVSPCLNVLSWLL- 201
Query: 1379 WQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQES 1438
+ T +A A WA +L + + + V+ + + RL E
Sbjct: 202 -FVSDTDVLAD------ACWALSYL-SDGPNDKIQAVID-----------AGVCRRLVEL 242
Query: 1439 LKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSEL------QKDSIK----- 1487
L N + + L A + + +T D + + + L K+SIK
Sbjct: 243 LMHNDYKVVSPALRA----VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298
Query: 1488 ------------LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIV 1535
+ + + L+ +L+ + A + + Q++ +V
Sbjct: 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358
Query: 1536 DALC 1539
+ C
Sbjct: 359 ELGC 362
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 37.3 bits (86), Expect = 0.044
Identities = 31/250 (12%), Positives = 78/250 (31%), Gaps = 32/250 (12%)
Query: 506 DPNQMDQEDSPVCLLSTQVPSLVKALQ-----------CQLREKSIRTRQDCL------- 547
D + + + L ++P + + L + R+ R + +
Sbjct: 71 DESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAG 130
Query: 548 ---ALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 604
L+ + + + + A L + S + + V + ++LL + EV+
Sbjct: 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 605 NLAVKCLGPLFKALTKIAASPLRIDLRPILTD--GIPILGSFLRKNQRALKLSTLLLLDT 662
A+ LG +A D R + + + N+ +L + L
Sbjct: 191 EQAIWALG-------NVAGDS--TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241
Query: 663 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 722
L ++++ LA L+ D ++ ++ A+ I
Sbjct: 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301
Query: 723 PQVLQIAKSP 732
+++++
Sbjct: 302 KRLVELLSHE 311
Score = 36.5 bits (84), Expect = 0.094
Identities = 33/228 (14%), Positives = 74/228 (32%), Gaps = 15/228 (6%)
Query: 538 KSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE 597
L L +L+ S D + A + + + ++ K L+ LL
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 598 DKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTL 657
++ VQ A++ +G I I +P L L + +K
Sbjct: 310 HESTLVQTPALRAVG-------NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 362
Query: 658 LLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKI------QPN 711
+ + I + + L L+ ++ + +++ +
Sbjct: 363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 422
Query: 712 ALVEPAAASILPQVLQIAKSPLLQGA--ALTSMLEFFKSLVLAELPGL 757
LV L +L+IA + +++ AL ++L+ ++ A +
Sbjct: 423 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNI 470
Score = 35.8 bits (82), Expect = 0.14
Identities = 52/354 (14%), Positives = 101/354 (28%), Gaps = 76/354 (21%)
Query: 1209 DLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVE--LAPL 1266
L +P + L + +LS + +L ++ V + +
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139
Query: 1267 VSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFT 1326
+ LT+IA A +P + +
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP----------------LFIQLLY 183
Query: 1327 PTSEEVKSAASYTLGSIAVGN--LQQYV------PFVLKEIENQPKRQYLLLHSLKEIIS 1378
S EVK A + LG++A + + YV +L + SL +
Sbjct: 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-------SLIRTAT 236
Query: 1379 W-------QSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSN- 1430
W + + Q +P + ++ + T + L+
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIY----SMDTETLVDACWAISYLSDGPQEAI 292
Query: 1431 -------LLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQK 1483
+ RL E L S L++T L AV ++ ++LQ
Sbjct: 293 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG------------------NDLQT 334
Query: 1484 DSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDA 1537
+ V+ L LL ++ A + + E Q++ ++DA
Sbjct: 335 QVV-----INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE-QIQAVIDA 382
Score = 35.4 bits (81), Expect = 0.18
Identities = 57/420 (13%), Positives = 133/420 (31%), Gaps = 62/420 (14%)
Query: 1148 DQEVKERAISCMGQIICNLGDYLKSELPVC-----LPILLDRLRNEITRLTTVKALTKIA 1202
D + + A QI+ + L + + E+ +L ALT IA
Sbjct: 100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIA 159
Query: 1203 ASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVE 1262
+ + D +P+ L +K + L + + +
Sbjct: 160 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 219
Query: 1263 LAPLVSESDLHIAQLTLTLLTSIAK---IQPNALVEPAAASILPQIGRHTDLTSVAD--- 1316
+ L + + + + L+++ + QP+ V A L ++ D ++ D
Sbjct: 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 279
Query: 1317 -----------LKQVILNA---------FTPTSEEVKSAASYTLGSIAVGNLQQYVPFVL 1356
Q +++ + S V++ A +G+I GN Q +
Sbjct: 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339
Query: 1357 KEIENQPKRQYLLLHSLKEI-------ISWQSTSTS----GVAQLQQFVPAIWAQLFLHC 1405
+ P + LL + I IS + + V P +
Sbjct: 340 AGV--LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY 397
Query: 1406 ECQEEGTRNVVAECLG------KLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTIS 1459
+ ++E + G + + + L + L+ + L A++ +
Sbjct: 398 KTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL- 456
Query: 1460 DQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCL 1519
+M +DK+ R + N+ ++ + ++ + +++N ++ A K +
Sbjct: 457 -KMGEADKEARGLNINENADFIE----------KAGGMEKIFNCQQNENDKIYEKAYKII 505
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 36.9 bits (85), Expect = 0.079
Identities = 22/168 (13%), Positives = 63/168 (37%), Gaps = 2/168 (1%)
Query: 37 RITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVR 96
G+L+ I+ ++ + ++A+ ++ S + + ++ A+ + + ++
Sbjct: 54 HFFGELAKGIKDKKTAANAMQAVAHIA-NQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQ 112
Query: 97 KRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH 156
L +V + N L+ L + + F+A+ A + A
Sbjct: 113 SVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172
Query: 157 IERVMPLILKYSREEDDELREFCLQACEAFVQRCP-KEITPHIQSITE 203
+ ++P++ + + E++ A + K+I I S+ +
Sbjct: 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQ 220
Score = 36.6 bits (84), Expect = 0.10
Identities = 48/342 (14%), Positives = 101/342 (29%), Gaps = 76/342 (22%)
Query: 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--LYTKLIDFLLEGLTTNKSTSTNRT 137
+L L +LS R ++ + ++ + L +G+ +K T+ N
Sbjct: 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIK-DKKTAANAM 73
Query: 138 YIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH 197
A +I +++P I + +D E++ + + V
Sbjct: 74 QAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK- 132
Query: 198 IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS 257
++ I +
Sbjct: 133 --ALLPHLTNAI-------------------------------------------VETNK 147
Query: 258 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 317
W+ + A A++ +D + + P L + ++ VK+ A A+ K T
Sbjct: 148 WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA---AATAAMTKATE 204
Query: 318 TFS-----PLTP------SDPNQMDQEDSPLCLLSTQ------VPSL---VKALQCQLRE 357
T P +DP + ++ L +T +L V L L E
Sbjct: 205 TVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNE 262
Query: 358 KSIRTRQDCLALLRELVQ--TLPGCLAPSLPALIPDVTSVAE 397
+ ++ ++ + + P +AP L L+P + S
Sbjct: 263 RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFA 304
Score = 33.1 bits (75), Expect = 1.1
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 344 VPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWD 399
+P L A+ + + LA +V +A +P LIP ++ WD
Sbjct: 135 LPHLTNAIV---ETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM-WD 186
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 35.4 bits (81), Expect = 0.19
Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 7/198 (3%)
Query: 543 RQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE 602
+ + L ++ S F A L + L ++ ++ LL N +
Sbjct: 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 291
Query: 603 VQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDT 662
+ CL +A L + + G L + +R L T +
Sbjct: 292 FLAITTDCLQ-------ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 663 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 722
+L S + L +++ + Q L L +++ L
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 404
Query: 723 PQVLQIAKSPLLQGAALT 740
Q+L ++ AA
Sbjct: 405 VQLLGSDDINVVTCAAGI 422
Score = 31.9 bits (72), Expect = 2.7
Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 576 DSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILT 635
+ + D + + + L +LL D++ V N A + +++
Sbjct: 139 INYQDDAELATRAIPELTKLLNDEDQVVVNKAA-------VMVHQLSKKEASRHAIMRSP 191
Query: 636 DGIPILGSFLRK-NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHI 694
+ + ++ N T L L + ++ + L ++ +
Sbjct: 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPA-LVNMLGSPVDSV 250
Query: 695 AQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSP 732
+T L ++ Q A + A L +++ +
Sbjct: 251 LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288
Score = 31.5 bits (71), Expect = 2.8
Identities = 19/173 (10%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 1178 LPILLDRLR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRK-NQRALKL 1234
+P L L +++ + +++ + + ++ N
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 1235 STLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALV 1294
T L L + ++ + L ++ + +T L ++ Q A +
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPA-LVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270
Query: 1295 EPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN 1347
A L ++ T+ + + + L +A GN
Sbjct: 271 AVRLAGGLQ----------------KMVALLNKTNVKFLAITTDCLQILAYGN 307
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 35.1 bits (81), Expect = 0.22
Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 40/196 (20%)
Query: 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMS 109
+ + V+LE LDI+ L S + +L L + ++ + A+ +
Sbjct: 330 DPIYVKLEKLDIMIRLAS------QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK 383
Query: 110 CNLQLYTKLIDFLLEGLTTNKSTSTN---------------------RTYIQCFAAICRQ 148
Q + + LL+ + T + T + ++
Sbjct: 384 -VEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEP 442
Query: 149 AGHR--------FAEHIE---RVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH 197
+AE I+ ++ L+ +E +++ L A + P E
Sbjct: 443 DARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQEL 502
Query: 198 IQSITELCLTYITYDP 213
+Q + L T + +P
Sbjct: 503 VQQVLSLA-TQDSDNP 517
Score = 32.4 bits (74), Expect = 1.6
Identities = 81/546 (14%), Positives = 185/546 (33%), Gaps = 81/546 (14%)
Query: 528 VKALQCQLREKSIRTRQDCLA-LLRELMTSSDKDF------RFMATNDLMSELQK----- 575
+ L+ +L + R++ + ++ + D M T++L EL+K
Sbjct: 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNL--ELKKLVYLY 72
Query: 576 --DSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPI 633
+ K D V ++ ED N ++ LAV+ +G + + KI L LR
Sbjct: 73 LMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI--RVDKIT-EYLCEPLRKC 129
Query: 634 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLH 693
L D P ++RK + + L + + L L+++S+
Sbjct: 130 LKDEDP----YVRKT-------AAVCVAKLHDINAQMVEDQGF---LDSLRDLIADSNPM 175
Query: 694 IAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAK--SPLLQGAALTSMLEFFKSLVL 751
+ + L+ I++ PN+ + + ++L + Q +L+ +
Sbjct: 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQ----IFILDCLSNYNP 231
Query: 752 AELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELK 811
+ ++ + + P ++ H + V A+ V+ KFL+ L
Sbjct: 232 KDDRE---AQSICERVTPRLS----HANS-------------AVVLSAVKVLMKFLELLP 271
Query: 812 TNKDDAHQVTIVALSHLV--MSCNLQLTIVALSHL--VMSCNLQLYTKLIDFLLEGLTTN 867
+ D + + LV +S ++ VAL ++ ++ ++ + I + N
Sbjct: 272 KDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF--VKYN 329
Query: 868 KSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQR 927
+ + Q +I +V+ + +Y+ E D + ++A +
Sbjct: 330 DPIYVKLEKLDIMIRLASQ------ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK 383
Query: 928 CPKEITPHIQSIGRHTDL---TSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQ 984
+ + ++ V + VI + F + +S + TL + +
Sbjct: 384 VEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIA-TLCENLDSLDEP 442
Query: 985 STSTSGV------AQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPR 1038
+ + A+ + + + + + KL L PS
Sbjct: 443 DARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQEL 502
Query: 1039 LQESLK 1044
+Q+ L
Sbjct: 503 VQQVLS 508
Score = 31.3 bits (71), Expect = 4.1
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 34/176 (19%)
Query: 64 DLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHL--VMSCNLQLYTKLIDF 121
D LS + I + P+LS AV + L ++ + Y L+
Sbjct: 224 DCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK 283
Query: 122 LLEGLTTNKSTSTNRTYI--QCFAAICRQAGHRFAEH----------------------- 156
L L T S Y+ + I ++ +
Sbjct: 284 LAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI 343
Query: 157 -------IERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELC 205
I +V+ + +Y+ E D + ++A + + + ++ +L
Sbjct: 344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI 399
Score = 29.7 bits (67), Expect = 10.0
Identities = 54/344 (15%), Positives = 112/344 (32%), Gaps = 55/344 (15%)
Query: 435 DMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 494
D VR+ AA C+ + ++ D L L + V ++ A + +
Sbjct: 132 DEDPYVRKTAAVCVAKLHDINAQMVEDQGFL--DSLRDLIADSNPMVVANAVAALSEISE 189
Query: 495 GTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQL-------REKSIRTRQDCL 547
+ L + N + L T + + Q + K R Q
Sbjct: 190 SHPNSNLLDLNPQN--------INKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSIC 241
Query: 548 ALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSE--RKVVKMLLRLLEDKNGEVQN 605
+ ++ ++ A LM L+ D + +K+ L+ LL + EVQ
Sbjct: 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEP-EVQY 300
Query: 606 LAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLV 665
+A++ + + + +I +++ D I + + KL ++ L
Sbjct: 301 VALRNINLIVQKRPEILKQEIKV-FFVKYNDPIYV---------KLEKLDIMIRL----- 345
Query: 666 NYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIA-KIQPNA------------ 712
S + +V EL +E D+ + + + A K++ +A
Sbjct: 346 -----ASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400
Query: 713 -LVEPAAASILPQVLQI-AKSPLLQGAALTSMLEFFKSLVLAEL 754
V + + I K P + + ++ E SL +
Sbjct: 401 TKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDA 444
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 35.3 bits (81), Expect = 0.24
Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 7/198 (3%)
Query: 543 RQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE 602
+ + L +++ S F A L + L ++ ++ LL N +
Sbjct: 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 155
Query: 603 VQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDT 662
+ CL +A L + + G L + +R L T +
Sbjct: 156 FLAITTDCLQ-------ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
Query: 663 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 722
+L S + L +++ + Q L L +++ L
Sbjct: 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 268
Query: 723 PQVLQIAKSPLLQGAALT 740
Q+L ++ AA
Sbjct: 269 VQLLGSDDINVVTCAAGI 286
Score = 34.5 bits (79), Expect = 0.37
Identities = 52/412 (12%), Positives = 114/412 (27%), Gaps = 66/412 (16%)
Query: 1178 LPILLDRLR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRK-NQRALKL 1234
+P L L +++ + +++ + + ++ N
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 1235 STLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALV 1294
T L L + ++ + L ++ + +T L ++ Q A +
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPA-LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134
Query: 1295 EPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPF 1354
A L ++ T+ + + + L +A GN Q+
Sbjct: 135 AVRLAGGLQ----------------KMVALLNKTNVKFLAITTDCLQILAYGN-QESKLI 177
Query: 1355 VLKE------IENQPKRQYLLLHSLKEIISWQSTSTSG-VAQLQQFVPAIWAQ-----LF 1402
+L + ++ E + W ++ ++ PAI L
Sbjct: 178 ILASGGPQALVN-------IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230
Query: 1403 LHCECQEEGTRNVVAECLGKLT-----LIDPSNLLPRLQESLKSNSALMRTTVLTAVKFT 1457
LH + L L+ LL L + L S+ + T +
Sbjct: 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS-- 288
Query: 1458 ISDQMTSSDKDFRFMATND-----LMSELQKDSIKLDDDSERKVVKMLLRLL---EDKNG 1509
+T ++ + M L+ + + D + + LR L +
Sbjct: 289 ---NLTCNNYKNKMMVCQVGGIEALVRTVLRAG---DREDITEPAICALRHLTSRHQEAE 342
Query: 1510 EVQNLAVKCLG--PLVNKVKEFQVETIVDA---LCSNMVSDKEQLRDISSIG 1556
QN G +V + ++ A L N+ + G
Sbjct: 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 394
Score = 33.0 bits (75), Expect = 1.1
Identities = 28/187 (14%), Positives = 69/187 (36%), Gaps = 9/187 (4%)
Query: 547 LALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLED-KNGEVQN 605
+ L +L+ D+ A + +K++ + ++V ++R +++ + E
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 606 LAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLV 665
L L+ L I + GIP L L ++ + L LL+
Sbjct: 76 CTAGTL----HNLSHHREGLLAI----FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 127
Query: 666 NYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQV 725
+ A L ++ L++++++ +T L +A + + A+ +
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187
Query: 726 LQIAKSP 732
+ I ++
Sbjct: 188 VNIMRTY 194
Score = 31.8 bits (72), Expect = 2.4
Identities = 58/431 (13%), Positives = 117/431 (27%), Gaps = 82/431 (19%)
Query: 439 KVRRAAAKCLEAIIAT---RRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKG 495
K CL+ + + +I L+ + L
Sbjct: 155 KFLAITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKL---------LWTT 203
Query: 496 TRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMT 555
+R L+ N+ ++ + +L L S R Q+CL LR L
Sbjct: 204 SRVLKVLSVCSSNKPAIVEAGG------MQALGLHLTDP----SQRLVQNCLWTLRNL-- 251
Query: 556 SSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLF 615
S+ ++ L++LL + V A L
Sbjct: 252 ---------------SDAATKQEG-----MEGLLGTLVQLLGSDDINVVTCAAGILS--- 288
Query: 616 KALTKIAASPLRIDLRPILTDGIPILGSFL-----RKNQRALKLSTLLLLDTLLVNYPSA 670
+ + + + GI L + R++ + L L + A
Sbjct: 289 ----NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 344
Query: 671 ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAK 730
+ L+ + L+ L + P +P+++Q+
Sbjct: 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404
Query: 731 SPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAA 790
+ + G + + + ++ G A H LA+ V
Sbjct: 405 RA------------HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT---GALHILARDVHN 449
Query: 791 LAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIV------ALSHL 844
+ +P+ F++ L + ++ +V L L I L+ L
Sbjct: 450 RIVIRGLNTIPL---FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 506
Query: 845 VMSCNLQLYTK 855
+ S N + T
Sbjct: 507 LHSRNEGVATY 517
Score = 31.1 bits (70), Expect = 4.9
Identities = 19/153 (12%), Positives = 48/153 (31%), Gaps = 9/153 (5%)
Query: 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPI 640
D + + + L +LL D++ V N A + +++ +
Sbjct: 8 DAELATRAIPELTKLLNDEDQVVVNKAA-------VMVHQLSKKEASRHAIMRSPQMVSA 60
Query: 641 LGSFLRK-NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTL 699
+ ++ N T L L + ++ + L ++ + +
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPA-LVKMLGSPVDSVLFYAI 119
Query: 700 TLLTSIAKIQPNALVEPAAASILPQVLQIAKSP 732
T L ++ Q A + A L +++ +
Sbjct: 120 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
1z3h_A
Length = 960
Score = 35.3 bits (80), Expect = 0.26
Identities = 115/1026 (11%), Positives = 276/1026 (26%), Gaps = 171/1026 (16%)
Query: 505 SDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDF--R 562
SD + + L + + S K + L + + T+ L ++ S++ R
Sbjct: 2 SDLETVAK-----FLAESVIASTAKTSERNL--RQLETQDGFGLTLLHVIASTNLPLSTR 54
Query: 563 FMAT----NDLMS--ELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFK 616
N + + + L ++ + K ++ L+ +Q + +
Sbjct: 55 LAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQ-------IGE 107
Query: 617 ALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEML 676
A++ IA D + L S L + L + ++ + ++ L
Sbjct: 108 AISSIA----DSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDEL 163
Query: 677 NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQG 736
+ + + L++ + +T+ + + +
Sbjct: 164 FLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI--------------------LF 203
Query: 737 AALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQ 796
L +++ + ++P F E + + L+ L +
Sbjct: 204 DVLLVLIKLYYDFNCQDIP--EFFEDNIQVGMGIF---------HKYLSYSNPLLEDPDE 252
Query: 797 REALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKL 856
E V+ K ++ ++ +Q+T L+ + +
Sbjct: 253 TEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEF-IQITWNLLTSISNQPKYDILVSK 311
Query: 857 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLI----LKYSREEDDE 912
L +T I Q E + L ++Y R + +
Sbjct: 312 SLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG 371
Query: 913 ---------LREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTS 963
+F + E H++ + K
Sbjct: 372 SDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKF---------- 421
Query: 964 EEVKSAASYTLGSIA---EIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVV 1020
K Y ++A I + +ST+ + + F A R
Sbjct: 422 ---KDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDA 478
Query: 1021 AECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIY 1080
+ + L L M QT ++
Sbjct: 479 IKYIYTFRNQLTKAQLIEL----------MPILATFLQTDEYVVY--------------- 513
Query: 1081 SFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLV 1140
A+ IT E +L +++ + D + T + + +
Sbjct: 514 ---------TYAA-------ITIEKILTIRESNTSPAFIFHKE--DISNSTEILLKNLIA 555
Query: 1141 RLKAADIDQEVK---ERAISCMGQIICNLGDYLKSELPVCLPILLDRLR-------NEIT 1190
+ E E + + +++ D ++ P L ++ + N
Sbjct: 556 LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615
Query: 1191 RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA 1250
T +++ I R +L ++ +P + ++ + ++ ++ +
Sbjct: 616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV-EQSAT 674
Query: 1251 ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL--VEPAAASILPQIGRH 1308
I + LAP V E +I LL S K + + P I
Sbjct: 675 IPESIKPLAQPLLAPNVWELKGNI-PAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASK 733
Query: 1309 TDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEI------ENQ 1362
DL + I+ L+ Y+ + +
Sbjct: 734 AYEVHGFDLLEHIMLLIDMNR------------------LRPYIKQIAVLLLQRLQNSKT 775
Query: 1363 PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGK 1422
+ L I + + + + + ++ Q++ + + K
Sbjct: 776 ERYVKKLTVFFGLISNKLGSDFL-IHFIDEVQDGLFQQIWGNFIITT--LPTIGNLLDRK 832
Query: 1423 LTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQ 1482
+ LI N++ Q L+ +T+ + ++ S + + D+ + + +S
Sbjct: 833 IALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFG 892
Query: 1483 KDSIKL 1488
KL
Sbjct: 893 SHFSKL 898
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 34.9 bits (80), Expect = 0.32
Identities = 53/388 (13%), Positives = 129/388 (33%), Gaps = 58/388 (14%)
Query: 552 ELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCL 611
L++S+ + + + + + + R + + L +N LA+ C+
Sbjct: 81 NLLSSNRYTEKQIGYLFISV-----LVNSNSELIRLINNAIKNDLASRNPTFMGLALHCI 135
Query: 612 GPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 671
+ ++ A ++ IL G + +++ S L L L P +
Sbjct: 136 ANVG---SREMAEAFAGEIPKILVAGDTM--DSVKQ-------SAALCLLRLYRTSPDLV 183
Query: 672 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL--VEPAAASILPQVLQIA 729
+ L+++ L + +L+T++A+ P A S L +++ A
Sbjct: 184 PMGDWTS---RVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSA 240
Query: 730 KSPLLQGAAL--------TSMLEFFKSLVLAELPGLSF------SELLNMLIAPVMTGTA 775
+ L +L + E P + +LN P +
Sbjct: 241 STDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKV 300
Query: 776 LHKQAFHS-LAKCV-AALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCN 833
H A ++ L + + + + L L + +++ + +AL + +
Sbjct: 301 QHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRE--TNLRYLALESMCTLAS 358
Query: 834 LQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 893
+ + A+ I+ ++ L T + S + + A+C +
Sbjct: 359 SEFSHEAVK------------THIETVINALKTERDVSVRQRAVDLLYAMCDR------S 400
Query: 894 HIERVMPLILKYSREEDDELREFCLQAC 921
+ ++++ +L Y D +RE +
Sbjct: 401 NAQQIVAEMLSYLETADYSIREEIVLKV 428
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 34.5 bits (78), Expect = 0.32
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 223 GLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 255
G E E + E ++ EDE EDD+ +DDD
Sbjct: 362 GAALEFEFEEDEEEADEDEDEEEDDDHGLEDDD 394
Score = 34.5 bits (78), Expect = 0.32
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 403 GLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 435
G E E + E ++ EDE EDD+ +DDD
Sbjct: 362 GAALEFEFEEDEEEADEDEDEEEDDDHGLEDDD 394
Score = 33.8 bits (76), Expect = 0.64
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 170 EEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGG 229
EE +E E L + ++ ++ P + + T +E+E E
Sbjct: 328 EELEEDLEERLALDYSIGEQLKDKLIPR-------AVDWFTGAALEFEFEEDE----EEA 376
Query: 230 GEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKC 267
E D EE+D +DD E +++ D A +C
Sbjct: 377 DEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPEC 414
Score = 31.4 bits (70), Expect = 3.1
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 402 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 435
L E + + +E++ E+E +D DD +
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGE 396
Score = 31.1 bits (69), Expect = 4.2
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 397 EWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 435
E++ EE E + +++ G ++ + ++ DD
Sbjct: 366 EFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDF 404
Score = 30.3 bits (67), Expect = 6.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 404 LGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 435
G E + EEE EDE E++++ +D
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLED 392
Score = 30.3 bits (67), Expect = 7.1
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 398 WDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKC 447
+ E E E D EE+D +DD E +++ D A +C
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPEC 414
Score = 29.9 bits (66), Expect = 7.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 397 EWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 435
E E E + + EEED + EDD+ S ++
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401
Score = 29.9 bits (66), Expect = 8.6
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 393 TSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 435
T A E E E + + E++D E +D + DD
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDD 403
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 34.9 bits (79), Expect = 0.34
Identities = 37/378 (9%), Positives = 99/378 (26%), Gaps = 48/378 (12%)
Query: 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQA 94
R+ I + ++ LS L P + ++ L + +
Sbjct: 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEG 473
Query: 95 VRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154
+R + ++ +L +TT++ +Q F
Sbjct: 474 LR-------GPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFF 526
Query: 155 EHIERVMPLILKY------SREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTY 208
++ +P +++Y ++ +R FV+ K++ + +S +
Sbjct: 527 DYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDL 586
Query: 209 ITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCL 268
+ + + + D + E L
Sbjct: 587 LNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFE--------------------TVGVL 626
Query: 269 EAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSD------IFHAYMALLKGTRTFSPL 322
+ + + LI + + S ++ + MA+ + F
Sbjct: 627 ISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686
Query: 323 TPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLA 382
+ + + + L + IR ++ + +
Sbjct: 687 GSEEVAWLAS-------FNKASDEIFLILDRMGFNEDIRGA--VRFTSGRIINVVGPDML 737
Query: 383 PSLPALIPDVTSVAEWDE 400
P +P LI + + + +E
Sbjct: 738 PKVPQLISILLNSIDMNE 755
Score = 31.8 bits (71), Expect = 2.6
Identities = 89/703 (12%), Positives = 193/703 (27%), Gaps = 82/703 (11%)
Query: 525 PSLVKALQCQLREKSIRTRQDC-LALLREL-MTSSDKDFRFMATNDLMSELQKDSIKLDD 582
+LQ + S + L +L + +D L KD+I+ +D
Sbjct: 127 NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRAND 186
Query: 583 DSE--RKVVKMLLRLLEDKNGEVQNLAVKCLGPLFK--ALTKIAASPLRIDLRPILTDG- 637
S+ V +M+L KN L ++ + I P L L
Sbjct: 187 MSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQIEE 246
Query: 638 -----IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDL 692
+ + K + L+ LL + L + + + +A L++
Sbjct: 247 LRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINA--- 303
Query: 693 HIAQLTLTLLTSIAKIQP--NALVEPAAASILPQVLQIAKSPLLQGAA-----LTSMLEF 745
+ + + +++ P ++ P +++ + + L+ +L
Sbjct: 304 -QGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVS 362
Query: 746 FKSLVLAELPGLSFSELLNMLIAPVM-----------------TGTALHKQAFHSLAKCV 788
+ ++ S E L L+ ++ A ++ L
Sbjct: 363 LRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQ 422
Query: 789 AALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSC 848
+ + + + L +
Sbjct: 423 DTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFN 482
Query: 849 NLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY--- 905
+ ++ +L +TT++ +Q F ++ +P +++Y
Sbjct: 483 EVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVG 542
Query: 906 ---SREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPT 962
++ +R FV+ K++ + +S L + DL + ++ T
Sbjct: 543 PRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESS-----LAMLGDLLNISVSPVTDM 597
Query: 963 SEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAE 1022
V + S S Q V L + A
Sbjct: 598 DAPVPTLNSSIRNSDFNS---QLYLFETVGVLISSGNLTPEEQ---------------AL 639
Query: 1023 CLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSF 1082
L L L + ++ N + +EE +++ SF
Sbjct: 640 YCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFA--KGFPARGSEEVAWLASF 697
Query: 1083 YYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRL 1142
S I + D V ++I + D P + L +
Sbjct: 698 N--KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP----DMLPKVPQLISILLNSI 751
Query: 1143 KAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRL 1185
++ +V +S + Q+I D + LP LL R+
Sbjct: 752 DMNEL-VDV----LSFISQLIHIYKDNMMEITNRMLPTLLMRI 789
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A, PUTA,
flavoenzyme, DNA-binding, FAD, flavoprotein,
multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A
{Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A*
1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Length = 551
Score = 34.2 bits (78), Expect = 0.40
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 1676 LMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVK---QEYEKQDELKRSAMRAVA 1732
L ARL Q + ++ + LRN +A V+ QE+ + + M
Sbjct: 26 LEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAE 85
Query: 1733 ALLTIQDADKNPAL 1746
ALL I D AL
Sbjct: 86 ALLRIPDKATRDAL 99
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 32.6 bits (73), Expect = 0.52
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 367 LALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGED 426
L L+ E + L + P + A D E EG E D +E++ ED+ +D
Sbjct: 3 LELVGEYWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDD 62
Query: 427 DNEYSDDDD 435
D+E ++++
Sbjct: 63 DDEDEEEEE 71
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop,
transcription, protein binding; 2.40A {Drosophila
melanogaster}
Length = 257
Score = 33.5 bits (76), Expect = 0.59
Identities = 17/154 (11%), Positives = 60/154 (38%), Gaps = 9/154 (5%)
Query: 838 IVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER 897
+ + V+ +L + ++ +L L + + + + +C+ E +
Sbjct: 36 LAKVQETVLGSCAELAEEFLESVLS-LAHDSNMEVRKQVVAFVEQVCKVK----VELLPH 90
Query: 898 VMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDL-TSVADLKQVIL 956
V+ ++ R+ ++ + +QAC + + + + ++ ++ +K IL
Sbjct: 91 VINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQIL 150
Query: 957 NAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSG 990
+ ++ +++ A + + ++ QS +
Sbjct: 151 DMIDNENDGIRTNA---IKFLEGVVVLQSFADED 181
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 33.6 bits (77), Expect = 0.64
Identities = 28/187 (14%), Positives = 68/187 (36%), Gaps = 9/187 (4%)
Query: 547 LALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE-DKNGEVQN 605
+ L +L+ D+ A + +K++ + ++V ++R ++ + E
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 606 LAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLV 665
L L+ L I + GIP L L ++ + L LL+
Sbjct: 79 CTAGTL----HNLSHHREGLLAI----FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 666 NYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQV 725
+ A L ++ L++++++ +T L +A + + A+ +
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 726 LQIAKSP 732
+ I ++
Sbjct: 191 VNIMRTY 197
Score = 29.7 bits (67), Expect = 9.5
Identities = 46/387 (11%), Positives = 112/387 (28%), Gaps = 67/387 (17%)
Query: 1148 DQEVKERAISCMGQIICNLGDYLKSELPVC--LPILLDRLRN---EITRLTTVKALTKIA 1202
+ + C+ + K + L++ +R E TT + L ++
Sbjct: 156 NVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214
Query: 1203 ASPLRIDLRPILTD--GIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVT 1260
+P + + G+ LG L + L + L L +S +
Sbjct: 215 VCS---SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL--------RNLSDAATKQEG 263
Query: 1261 VE-----LAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVA 1315
+E L L+ D+++ +L+++ + +
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA----------- 312
Query: 1316 DLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKE 1375
L + +L A E++ A L + + + E+ R + L + +
Sbjct: 313 -LVRTVLRA--GDREDITEPAICALRHLTSRHQEA-------EMAQNAVRLHYGLPVVVK 362
Query: 1376 IISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRL 1435
++ S + + + L L + +L LL R
Sbjct: 363 LL--HPPSHWPL---IKATVGLIRNLALCPANHAPLRE---QGAIPRL-----VQLLVRA 409
Query: 1436 QESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERK 1495
+ + +++ T + + + +A + + +
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL---------N 460
Query: 1496 VVKMLLRLLEDKNGEVQNLAVKCLGPL 1522
+ + ++LL +Q +A L L
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCEL 487
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 33.0 bits (76), Expect = 0.64
Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 41/180 (22%)
Query: 439 KVRRAAAKCLEAIIATRRDLIGDMYRL-VSPPLIARFKEREENVKSDIFHAYMALLKGTR 497
++ + A L I + + I + P L+ E + +
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA----------LW 160
Query: 498 TFSPLTPSDPNQMDQE-DSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTS 556
S + Q+ D+ +P+LV+ L + + Q+ L L + +
Sbjct: 161 ALSNIASGGNEQIQAVIDAGA------LPALVQLLSS----PNEQILQEALWALSNIASG 210
Query: 557 SDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFK 616
++ QK ++ E ++ L +L +N ++Q A + L L
Sbjct: 211 GNE--------------QKQAV-----KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo
sapiens} PDB: 3odr_A 3ods_A 3o2q_A* 3o2s_A
Length = 386
Score = 33.2 bits (75), Expect = 0.73
Identities = 13/132 (9%), Positives = 46/132 (34%), Gaps = 6/132 (4%)
Query: 840 ALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 899
+ L+++ + L +D ++ +KS + I C++ E + +++
Sbjct: 48 QVQELIINKDPTLLDNFLDEIIA-FQADKSIEVRKFVIGFIEEACKRD----IELLLKLI 102
Query: 900 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDL-TSVADLKQVILNA 958
+ R+E+ + + + + + + V+ + I+
Sbjct: 103 ANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILL 162
Query: 959 FTPTSEEVKSAA 970
++ +++ A
Sbjct: 163 LDSDNDGIRTHA 174
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 32.8 bits (75), Expect = 0.79
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 25 LGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTAL 84
LG + + L+ + V+ A++ + + P I+
Sbjct: 78 LGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK----IVEQS 133
Query: 85 LPQLSSPRQAVRKRTIVALSHL 106
VR+ T A+S +
Sbjct: 134 QITAFDKSTNVRRATAFAISVI 155
Score = 32.1 bits (73), Expect = 1.5
Identities = 26/212 (12%), Positives = 62/212 (29%), Gaps = 45/212 (21%)
Query: 440 VRRAAAKCLEAIIATRRDLIGDMYRLVS-----------------------PPLIARFKE 476
+R A+K ++ +++RL+ I +
Sbjct: 6 QKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSD 65
Query: 477 REENVKSDIFHAYMAL--LKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQ 534
+ + L +K + + N M D C+ + + +++ Q
Sbjct: 66 KNYIRRD---IGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA----TAIESTA-Q 117
Query: 535 LREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLR 594
+K+ + + + R + ++D + +L+
Sbjct: 118 RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAIS--------VINDK---ATIPLLIN 166
Query: 595 LLEDKNGEVQNLAVKCLGPLFKALTKIAASPL 626
LL+D NG+V+N A + + K
Sbjct: 167 LLKDPNGDVRNWAAFAIN-INKYDNSDIRDCF 197
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Length = 799
Score = 32.4 bits (73), Expect = 1.5
Identities = 8/83 (9%), Positives = 24/83 (28%)
Query: 89 SSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ 148
++ + L S + +++ L +N S +
Sbjct: 530 VDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAA 589
Query: 149 AGHRFAEHIERVMPLILKYSREE 171
R + ++ +L + +E+
Sbjct: 590 LVRRNNGLSKELVRTLLFHIKEQ 612
Score = 30.9 bits (69), Expect = 4.5
Identities = 8/70 (11%), Positives = 21/70 (30%)
Query: 840 ALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 899
L S + +++ L +N S + R + ++
Sbjct: 543 TTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELV 602
Query: 900 PLILKYSREE 909
+L + +E+
Sbjct: 603 RTLLFHIKEQ 612
Score = 30.9 bits (69), Expect = 5.4
Identities = 50/425 (11%), Positives = 120/425 (28%), Gaps = 37/425 (8%)
Query: 576 DSIKLDDDSERKVVKMLLRLLE----DKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLR 631
+ I L ++V++ L ++ +KN ++ N + C L ++ S +
Sbjct: 324 NGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCF----AYLLELDPSNAYLIYD 379
Query: 632 PILTDGIPILG--SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSE 689
IL D L +++ L + +V + + V L +
Sbjct: 380 KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK--LYRVHITNVLSMLVSKLDM 437
Query: 690 SDLHIAQLTLTLLTSIAKIQP--NALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFK 747
+D ++ + + SIA P + E S L + + S F
Sbjct: 438 NDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRV 497
Query: 748 SL-VLAELPGLS---FSELLNMLIAPVMT--GTALHKQAFHSLAKCVAALAITVQREALP 801
+L S F +L + + + L + + L ++ +
Sbjct: 498 DDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFN 557
Query: 802 VV-EKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFL 860
+ +N + L + ++ ++ LV + + ++
Sbjct: 558 YFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGA 617
Query: 861 LEGLTTNKSTSTNRT---YIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDE----- 912
+T++ + Y+ + R E+ + ++ + +
Sbjct: 618 GSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVI 677
Query: 913 --------LREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSE 964
L C P G D + + P+S+
Sbjct: 678 TSIVIHSALATLCTTEITDCRLFPEDSKIPEKDRWGGLQFDPRRFDKQHLSFQWHVPSSD 737
Query: 965 EVKSA 969
E+ +
Sbjct: 738 EITLS 742
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 30.7 bits (70), Expect = 1.6
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 21/85 (24%)
Query: 543 RQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE 602
L M +K R + L ++ D++ + LL L +++
Sbjct: 10 HSSGLVPRGSHMADENKWVRRDVSTAL--------SRMGDEA----FEPLLESLSNEDWR 57
Query: 603 VQNLAVKCLG---------PLFKAL 618
++ A +G PL K L
Sbjct: 58 IRGAAAWIIGNFQDERAVEPLIKLL 82
Score = 29.6 bits (67), Expect = 4.5
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 33/136 (24%)
Query: 524 VPSLVKALQ---CQLREKSI----RTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKD 576
+ + +R R + L E +++ D R A +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIG------ 67
Query: 577 SIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTD 636
D + V+ L++LLED +G V++ A ++L +I +R + +
Sbjct: 68 --NFQD---ERAVEPLIKLLEDDSGFVRSGAA-------RSLEQIGGERVRAAMEKLAET 115
Query: 637 GIPI--------LGSF 644
G L +
Sbjct: 116 GTGFARKVAVNYLETH 131
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 31.3 bits (70), Expect = 2.3
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 1402 FLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTV 1450
+ +C E + A L + L+ P L L+ S ++ T V
Sbjct: 112 WDGLDCAEHVPERLAAGTLVVVVLMPPEQLRNSSFHFLRELSRVLHTNV 160
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 30.4 bits (68), Expect = 2.7
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 211 YDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 255
D N N+ED + E EE E D E +D +
Sbjct: 9 NDGNENFEDFDV--------EHFSDEETYEEKPQFKDGETTDANG 45
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 3.0
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 26/91 (28%)
Query: 394 SVAEWDEEEG--LGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 451
S+ +W EE+ L + +D + E E + + ++ W R++ +E
Sbjct: 86 SIRKWREEQRKRL------QELDAASKVMEQEWREKAKKDLEE---WNQRQSEQ--VEKN 134
Query: 452 IATRRDLIGDMYRLVSPPLIARF-KEREENV 481
R D F ++ + ++
Sbjct: 135 KINNRIA--D----------KAFYQQPDADI 153
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
protein, transcripti repressor, shuttling, dimer,
oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
SCOP: a.176.1.1 c.1.23.2
Length = 669
Score = 31.6 bits (71), Expect = 3.0
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 1657 LNHLESGLRDHY---DIKMLTYLM-LARLAQMTPAALLQRLERIVEPLRNTVTLKVKANS 1712
+ + + Y + + ++ L+ ARL Q + ++ + LRN +A
Sbjct: 88 QSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGM 147
Query: 1713 VK---QEYEKQDELKRSAMRAVAALLTIQDADKNPAL 1746
V+ QE+ + + M ALL I D AL
Sbjct: 148 VQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDAL 184
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat
motif; 1.50A {Saccharomyces cerevisiae}
Length = 177
Score = 30.4 bits (68), Expect = 3.2
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 25/120 (20%)
Query: 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYD 212
I K + E + E F+ K++ P + I Y+
Sbjct: 65 IVNEIAEHNAFFTKILVTPEYEKN--FMGGIERFLGLEHKDLIPLLPKIL-----VQLYN 117
Query: 213 PNYNYEDE-----EEGLGGEGGGEGMDT-------------EEEDGEDEGEDDNEYSDDD 254
+ E+E + E E +DE +D+ E D
Sbjct: 118 NDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDDDEEDDELERPHRD 177
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 30.9 bits (70), Expect = 3.3
Identities = 13/55 (23%), Positives = 17/55 (30%)
Query: 380 CLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 434
L P L A + A GE E + E E E S+D+
Sbjct: 171 VLPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDN 225
Score = 29.3 bits (66), Expect = 9.5
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 218 EDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 255
E + + G + E + EG+ E +
Sbjct: 184 EVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEA 221
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 30.5 bits (68), Expect = 3.8
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 1484 DSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLV-NKVKEFQVETIVDALCSNM 1542
D I+ D + V + + + DKN V A++ + +V N + E +
Sbjct: 34 DLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL 93
Query: 1543 VS 1544
Sbjct: 94 KD 95
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 30.6 bits (68), Expect = 4.4
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 1402 FLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTV 1450
+ +C E + A L + L+ P L L+ S ++ T V
Sbjct: 112 WDGLDCAEHVPERLAAGTLVVVVLMPPEQLRNSSFHFLRELSRVLHTNV 160
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 31.1 bits (69), Expect = 4.4
Identities = 16/157 (10%), Positives = 42/157 (26%), Gaps = 9/157 (5%)
Query: 60 DILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKR-----TIVALSHLVMSCNLQL 114
D + +L + L K + +++ +
Sbjct: 443 DTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQ 502
Query: 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDE 174
+L+ L E + T ++ + C + E+ + P I R +
Sbjct: 503 IPRLMRVLAEIPYEKLNVKLLGTALETMGSYC----NWLMENPAYIPPAINLLVRGLNSS 558
Query: 175 LREFCLQACEAFVQRCPKEITPHIQSITELCLTYITY 211
+ + + C ++ P+ + C +
Sbjct: 559 MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT 595
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding,
phosphorylation, protein biosynthesis, translation
inititation; 1.8A {Homo sapiens}
Length = 208
Score = 30.1 bits (67), Expect = 5.0
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 28/136 (20%)
Query: 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYD 212
E I++ L++ + + + + L E V ++ I I YD
Sbjct: 58 IREQIKKYRRHFLRFCHN-NKKAQRYLLHGLECVVAMHQAQLISKIPHIL-----KEMYD 111
Query: 213 PNYNYEDE-----EEGLGGEGGGEGM-----------------DTEEEDGEDEGEDDNEY 250
+ E+ E+ E + E GE+E ED+N
Sbjct: 112 ADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIE 171
Query: 251 SDDDDMSWKVRRAAAK 266
+ + K
Sbjct: 172 VVYSKLESVPKVETVK 187
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Length = 140
Score = 29.6 bits (66), Expect = 5.0
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1460 DQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCL 1519
D +TS + +A + E+ ++ + +L+ L++K+ V+ A++ +
Sbjct: 17 DAVTSDEDK---VAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLI 73
Query: 1520 GPLVNK 1525
V K
Sbjct: 74 KYAVGK 79
Score = 28.8 bits (64), Expect = 7.7
Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 547 LALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 606
++ + TS + +A + E+ ++ + +L+ L++K+ V+
Sbjct: 13 SRMIDAV-TSDEDK---VAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQK 68
Query: 607 AVKCL 611
A++ +
Sbjct: 69 ALRLI 73
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation,
transferase; HET: ATP; 3.00A {Geobacillus
stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB:
1miv_A* 1miy_A*
Length = 404
Score = 30.0 bits (68), Expect = 8.2
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 733 LLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALA 792
L A ++ ++ + A LPGL+ E L + LA A
Sbjct: 203 LGGPFAARALPLLAETGLNAYLPGLAGKEKQLRL---------AAAYRWPWLAAREERWA 253
Query: 793 ITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQL 852
+ + FL+ K + + + + T L + L +
Sbjct: 254 LLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRPEAWTNEQLFSAGLERALSV 313
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 29.9 bits (66), Expect = 9.2
Identities = 20/168 (11%), Positives = 52/168 (30%), Gaps = 7/168 (4%)
Query: 57 EALDILSDLLSRFGA-LLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY 115
+ D L + GA LL + + + L + + + + ++
Sbjct: 426 DISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS 485
Query: 116 TKLIDFLLEGLTTNKSTSTN--RTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDD 173
++ L+ + ++ T + A+ I V+PL+L
Sbjct: 486 D-VVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGNP-- 541
Query: 174 ELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEE 221
EL + + + C ++ P+ +I + + + +
Sbjct: 542 ELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMW 589
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.376
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 26,646,511
Number of extensions: 1660157
Number of successful extensions: 4083
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3776
Number of HSP's successfully gapped: 236
Length of query: 1827
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1720
Effective length of database: 3,714,246
Effective search space: 6388503120
Effective search space used: 6388503120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.9 bits)