BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14677
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain
Length = 145
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 98/133 (73%), Gaps = 1/133 (0%)
Query: 340 VIKYSEPPDARKPKRRWRLYPFK-GDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSK 398
+ ++EPP+ARKP RWRLY FK G+ L +HRQS +L GR+R++ADIP DHPSCSK
Sbjct: 1 TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSK 60
Query: 399 QHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
QHA +QYR + + DG GK+++ YI DL S N T++N I+P+RY EL EKD IKFG
Sbjct: 61 QHAVIQYREXEKEKPDGXXGKQVKPYIXDLGSTNKTYINESPIEPQRYYELFEKDTIKFG 120
Query: 459 FSSREYVLLHEHS 471
SSREYVLLHE+S
Sbjct: 121 NSSREYVLLHENS 133
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 343 YSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAA 402
Y EPP + L KG T L + S L GR D+ ++HPS S+ HA
Sbjct: 8 YQEPPWGGPATAPYSLETLKGGTILGTRSLKGTSYCLFGR-LSGCDVCLEHPSVSRYHAV 66
Query: 403 LQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSR 462
LQ+R + E S G LY DL S +GTF+N +I P+ Y + V++FG S+R
Sbjct: 67 LQHRASGPDGECDSNGPGFYLY--DLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTR 124
Query: 463 EYVL 466
++L
Sbjct: 125 LFIL 128
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
pdb|2JKD|B Chain B, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
Length = 187
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 40/168 (23%)
Query: 321 PDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKG-DTQLPVLHIHRQ---- 375
PDF SG L ++N G+ +K+ EP DA P + + D + L I+R+
Sbjct: 7 PDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKD 66
Query: 376 ------------SAFLMGR-----------DRK---VADIPVDHPSCSKQHAALQYRLTD 409
S +L+GR DR VADI + + SKQH +Q+R
Sbjct: 67 KGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFR--- 123
Query: 410 YTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKF 457
+G ++ Y++DL+S+NGT +NN I RY+EL DV+
Sbjct: 124 -----NVRGI-LKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTL 165
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 343 YSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAA 402
+ P A KP L KGD + L I + +L GR+ + D +DH SCS+ HAA
Sbjct: 22 FDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAA 81
Query: 403 LQYRLTDYTREDGSKGKRI-RLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSS 461
L Y K + R+++IDL S +GTF+ + +++P + ++ + FG S+
Sbjct: 82 LVYH------------KHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAST 129
Query: 462 REYVL 466
R Y L
Sbjct: 130 RAYTL 134
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p
pdb|3ELV|B Chain B, Crystal Structure Of Full-Length Yeast Pml1p
Length = 205
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 40/168 (23%)
Query: 321 PDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKG-DTQLPVLHIHRQ---- 375
PDF SG L ++N G+ +K+ EP DA P + + D + L I+R+
Sbjct: 31 PDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKD 90
Query: 376 ------------SAFLMGR-----------DRK---VADIPVDHPSCSKQHAALQYRLTD 409
S +L+GR DR VADI + + SKQH +Q+R
Sbjct: 91 KGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFR--- 147
Query: 410 YTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKF 457
+G ++ Y++DL+S+NGT +NN I RY+EL DV+
Sbjct: 148 -----NVRGI-LKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTL 189
>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204
Length = 158
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 34/119 (28%)
Query: 351 KPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGR-----------DRK---VADIPVDHPSC 396
K K W+ Y G +S +L+GR DR VADI + +
Sbjct: 42 KDKGPWKRYDLNG-----------RSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETS 90
Query: 397 SKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVI 455
SKQH +Q+R +G ++ Y++DL+S+NGT +NN I RY+EL DV+
Sbjct: 91 SKQHCVIQFR--------NVRGI-LKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVL 140
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 425 IIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
I DL S+NGT +N+ +DP+ V L + DVIK G
Sbjct: 69 IQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLG 102
>pdb|3GQS|A Chain A, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
pdb|3GQS|B Chain B, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
Length = 106
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 370 LHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLE 429
H+ +++G D +VADI + S S+QHA + G + I DL
Sbjct: 19 FHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIII------------GNDNSVLIEDLG 66
Query: 430 SANGTFVNNKKID 442
S NG V +KI+
Sbjct: 67 SKNGVIVEGRKIE 79
>pdb|1MZK|A Chain A, Nmr Structure Of Kinase-Interacting Fha Domain Of Kinase
Associated Protein Phosphatase, Kapp In Arabidopsis
Length = 139
Score = 31.6 bits (70), Expect = 0.90, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 387 ADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKID---- 442
+D+ + S +HA + + T + E ++D+ S NGT VN+ I
Sbjct: 42 SDLALKDSEVSGKHAQITWNSTKFKWE-----------LVDMGSLNGTLVNSHSISHPDL 90
Query: 443 -PKRY---VELLEKDVIKFGFSSREYVLLHEHSK 472
+++ VEL D+I G +++ YV + ++
Sbjct: 91 GSRKWGNPVELASDDIITLGTTTKVYVRISSQNE 124
>pdb|2JQJ|A Chain A, Nmr Structure Of Yeast Dun1 Fha Domain
pdb|2JQL|A Chain A, Nmr Structure Of The Yeast Dun1 Fha Domain In Complex With
A Doubly Phosphorylated (Pt) Peptide Derived From Rad53
Scd1
Length = 151
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 370 LHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAA---LQYRLTDYTREDGSKGKRIRLYII 426
+ I ++ +GR R D+ + P S HA LQ + ++ R + +I
Sbjct: 32 VEITNRNVTTIGRSRS-CDVILSEPDISTFHAEFHLLQMDVDNFQRN--------LINVI 82
Query: 427 DLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
D +S NGTF+N ++ K Y+ L D I FG
Sbjct: 83 D-KSRNGTFINGNRLVKKDYI-LKNGDRIVFG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,749,630
Number of Sequences: 62578
Number of extensions: 423041
Number of successful extensions: 777
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 14
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)