Query psy14677
Match_columns 483
No_of_seqs 321 out of 1662
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 17:50:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3elv_A PRE-mRNA leakage protei 100.0 5.6E-35 1.9E-39 276.8 11.1 143 316-467 26-203 (205)
2 4h87_A Kanadaptin; FHA domain 100.0 8.4E-32 2.9E-36 236.7 15.2 125 341-468 6-130 (130)
3 3els_A PRE-mRNA leakage protei 99.9 1.9E-28 6.5E-33 222.3 9.4 121 338-467 1-156 (158)
4 2jpe_A Nuclear inhibitor of pr 99.9 3.1E-27 1.1E-31 208.0 7.6 135 324-470 4-138 (140)
5 3gqs_A Adenylate cyclase-like 99.9 2.8E-22 9.4E-27 168.5 12.9 101 352-466 1-101 (106)
6 1uht_A Expressed protein; FHA 99.9 1.5E-21 5.2E-26 166.5 11.7 105 351-468 8-112 (118)
7 2jqj_A DNA damage response pro 99.8 4.1E-20 1.4E-24 164.8 15.6 107 353-468 15-123 (151)
8 2kfu_A RV1827 PThr 22; FHA dom 99.8 4.5E-20 1.6E-24 168.4 15.1 98 350-465 50-147 (162)
9 2xt9_B Putative signal transdu 99.8 4.7E-20 1.6E-24 157.2 14.0 97 351-465 7-103 (115)
10 3va4_A Mediator of DNA damage 99.8 2.5E-20 8.4E-25 164.4 11.4 100 356-468 25-127 (132)
11 1mzk_A Kinase associated prote 99.8 6.8E-20 2.3E-24 161.3 13.1 105 354-470 6-122 (139)
12 2kb3_A Oxoglutarate dehydrogen 99.8 1.1E-19 3.7E-24 162.2 14.4 98 350-465 41-138 (143)
13 3hx1_A SLR1951 protein; P74513 99.8 1.4E-19 4.7E-24 158.9 12.4 105 354-471 9-118 (131)
14 1r21_A Antigen KI-67; beta san 99.8 1E-19 3.4E-24 157.5 11.0 105 346-467 3-108 (128)
15 1g3g_A Protien kinase SPK1; FH 99.8 1.8E-19 6.1E-24 163.3 12.4 115 339-469 19-148 (164)
16 2pie_A E3 ubiquitin-protein li 99.8 6.4E-19 2.2E-23 155.0 14.1 92 353-459 7-102 (138)
17 3po8_A RV0020C protein, putati 99.8 1.1E-18 3.7E-23 145.0 13.3 91 357-467 7-97 (100)
18 2csw_A Ubiquitin ligase protei 99.8 2.5E-19 8.6E-24 159.0 9.1 92 353-459 15-110 (145)
19 1gxc_A CHK2, CDS1, serine/thre 99.8 1.3E-18 4.4E-23 155.0 13.7 104 353-469 27-141 (149)
20 1lgp_A Cell cycle checkpoint p 99.8 3.2E-19 1.1E-23 151.5 9.0 99 357-469 6-111 (116)
21 1dmz_A Protein (protein kinase 99.8 7.4E-19 2.5E-23 158.6 11.6 109 357-471 7-127 (158)
22 1qu5_A Protein kinase SPK1; FH 99.7 2.6E-18 9E-23 159.0 9.6 99 367-471 41-151 (182)
23 3oun_A Putative uncharacterize 99.7 4.2E-18 1.4E-22 155.3 10.6 91 356-464 66-156 (157)
24 1g6g_A Protein kinase RAD53; b 99.7 1.8E-17 6.2E-22 143.7 11.7 79 376-468 36-119 (127)
25 1wln_A Afadin; beta sandwich, 99.7 6.1E-17 2.1E-21 139.2 10.6 96 357-469 13-114 (120)
26 2ff4_A Probable regulatory pro 99.7 2.2E-16 7.4E-21 157.8 11.7 84 366-466 297-380 (388)
27 3huf_A DNA repair and telomere 99.7 1.2E-16 4.1E-21 160.2 9.4 112 356-470 2-115 (325)
28 4ejq_A Kinesin-like protein KI 99.7 6E-16 2.1E-20 139.3 13.0 100 357-468 40-143 (154)
29 3fm8_A Kinesin-like protein KI 99.6 2.5E-14 8.6E-19 125.6 12.0 92 357-467 28-122 (124)
30 3i6u_A CDS1, serine/threonine- 99.4 3.8E-12 1.3E-16 126.0 12.9 97 355-464 9-115 (419)
31 3uv0_A Mutator 2, isoform B; F 99.4 1.8E-12 6.1E-17 111.7 9.1 80 368-466 13-99 (102)
32 4a0e_A YSCD, type III secretio 99.3 6.4E-12 2.2E-16 111.3 10.1 95 354-466 3-97 (123)
33 3kt9_A Aprataxin; FHA domain, 99.2 2.6E-10 9E-15 97.8 13.2 88 366-468 13-100 (102)
34 4egx_A Kinesin-like protein KI 99.0 3.6E-09 1.2E-13 98.2 13.7 99 357-468 70-173 (184)
35 2brf_A Bifunctional polynucleo 98.9 6.4E-09 2.2E-13 90.5 10.5 94 357-467 11-105 (110)
36 1wv3_A Similar to DNA segregat 98.8 3.8E-09 1.3E-13 101.0 7.6 80 368-464 85-166 (238)
37 1yj5_C 5' polynucleotide kinas 98.8 1.9E-08 6.4E-13 91.3 11.3 95 357-468 11-108 (143)
38 1ujx_A Polynucleotide kinase 3 98.7 1.4E-08 4.6E-13 89.6 6.6 95 357-468 18-115 (119)
39 1wv3_A Similar to DNA segregat 59.2 23 0.0008 33.5 7.4 45 357-406 3-47 (238)
40 2k6p_A Uncharacterized protein 46.6 21 0.00072 28.5 4.2 35 432-468 26-60 (92)
41 1dm9_A Hypothetical 15.5 KD pr 42.8 28 0.00096 30.3 4.7 34 432-467 34-67 (133)
42 2k5p_A THis protein, thiamine- 36.3 16 0.00054 29.3 1.9 26 433-458 36-63 (78)
43 2cu3_A Unknown function protei 34.2 19 0.00064 27.2 2.0 25 434-458 32-58 (64)
44 3po0_A Small archaeal modifier 33.6 28 0.00095 27.4 3.0 25 432-458 59-83 (89)
45 2q5w_D Molybdopterin convertin 33.4 31 0.0011 26.3 3.1 23 433-457 48-70 (77)
46 2kl0_A Putative thiamin biosyn 31.6 13 0.00044 29.4 0.7 26 433-458 32-59 (73)
47 2hj1_A Hypothetical protein; s 30.7 19 0.00063 30.4 1.5 29 427-458 55-83 (97)
48 1tyg_B YJBS; alpha beta barrel 30.7 24 0.00082 29.0 2.2 25 434-458 55-81 (87)
49 3hvz_A Uncharacterized protein 30.0 29 0.001 27.9 2.5 25 433-459 43-67 (78)
50 1fm0_D Molybdopterin convertin 29.5 39 0.0013 25.9 3.1 23 434-458 53-75 (81)
51 3mml_A Allophanate hydrolase s 28.6 45 0.0016 33.6 4.2 38 431-468 80-120 (318)
52 1p9k_A ORF, hypothetical prote 26.9 30 0.001 27.0 2.0 29 432-461 46-74 (79)
53 1ryj_A Unknown; beta/alpha pro 26.8 51 0.0017 25.3 3.3 23 434-458 42-64 (70)
54 2k9x_A Tburm1, uncharacterized 26.0 22 0.00075 30.3 1.2 24 434-457 70-95 (110)
55 1vjk_A Molybdopterin convertin 25.9 35 0.0012 27.7 2.3 23 434-458 70-92 (98)
56 3dwg_C 9.5 kDa culture filtrat 23.8 45 0.0015 26.5 2.6 25 434-458 61-87 (93)
57 1f0z_A THis protein; ubiquitin 23.4 17 0.0006 27.5 0.0 24 434-457 34-59 (66)
58 3rpf_C Molybdopterin convertin 22.0 44 0.0015 25.7 2.1 24 434-458 45-68 (74)
59 2lmr_A ODIN, ankyrin repeat an 21.2 21 0.0007 30.2 0.1 77 39-116 7-93 (101)
60 1wgk_A Riken cDNA 2900073H19 p 20.8 26 0.00088 30.0 0.6 24 434-457 76-101 (114)
61 2qjl_A URM1, ubiquitin-related 20.4 57 0.0019 26.5 2.6 24 434-457 67-92 (99)
No 1
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=100.00 E-value=5.6e-35 Score=276.78 Aligned_cols=143 Identities=32% Similarity=0.531 Sum_probs=101.0
Q ss_pred CCCCCCCCCCccccccccccCCceeeccCCCCCCCCCCC-------------ceEEEEeeCCC----cccEEEeccccee
Q psy14677 316 QPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKR-------------RWRLYPFKGDT----QLPVLHIHRQSAF 378 (483)
Q Consensus 316 ~~kekPnF~~SG~LaedsNt~nGVvLkysEPp~Ar~P~~-------------~WrL~VfKGge----~~eti~L~~qs~y 378 (483)
..+++|||++||+|+.++|+++||+|+|+||+||++|.. .|.|+||+++. .++++.|..++.|
T Consensus 26 ~~~~~pnf~~sg~L~~~~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~~~s~y 105 (205)
T 3elv_A 26 YIDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCY 105 (205)
T ss_dssp --------------------------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECSSCSEE
T ss_pred cccccCCCcccccchhhhcccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEecCCCce
Confidence 346899999999999999999999999999999999854 46799999876 6789999988999
Q ss_pred eeccCC--------------CccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCC
Q psy14677 379 LMGRDR--------------KVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPK 444 (483)
Q Consensus 379 lIGRd~--------------~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~ 444 (483)
+|||++ ..|||+|++|+|||+||+|++... + ....|||+||+|+|||||||++|.+.
T Consensus 106 ~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~-----~----~~~~~~l~DLgStNGTfVNG~rI~~~ 176 (205)
T 3elv_A 106 LVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV-----R----GILKCYVMDLDSSNGTCLNNVVIPGA 176 (205)
T ss_dssp EEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEE-----T----TEEEEEEEECSCSSCCEETTEECCBT
T ss_pred eecccccccccccccccccCccceEEeCCCCCCcccEEEEEecC-----C----CceeEEEEeCCCCCCCeECCEECCCC
Confidence 999995 359999999999999999998742 1 13469999999999999999999999
Q ss_pred ceEEcCCCCEEEEcCcc----eEEEEe
Q psy14677 445 RYVELLEKDVIKFGFSS----REYVLL 467 (483)
Q Consensus 445 r~veLkdGDvIrFG~ST----ReYVLl 467 (483)
.+++|.+||+|+||.++ .+++++
T Consensus 177 ~~~~L~~GD~I~fG~s~r~~~~el~f~ 203 (205)
T 3elv_A 177 RYIELRSGDVLTLSEFEEDNDYELIFM 203 (205)
T ss_dssp SCEECCTTCEEESSSSGGGCSEEEEEE
T ss_pred ceeECCCCCEEEECCCCCCCCeEEEEE
Confidence 99999999999999774 455554
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.97 E-value=8.4e-32 Score=236.71 Aligned_cols=125 Identities=33% Similarity=0.505 Sum_probs=108.3
Q ss_pred eccCCCCCCCCCCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCce
Q psy14677 341 IKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKR 420 (483)
Q Consensus 341 LkysEPp~Ar~P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~ 420 (483)
..|.+|+||.+|...|+|+|++++..++++.|..++.|+|||++ .|||+|++|+|||+||+|+|+....... .....
T Consensus 6 ppy~~P~wa~~p~~~~~L~v~k~g~~~~~~~L~~~~~~~IGR~~-~~di~l~~~~VSr~HA~I~~r~~~~~~~--~~~~~ 82 (130)
T 4h87_A 6 PPYQEPPWGGPATAPYSLETLKGGTILGTRSLKGTSYCLFGRLS-GCDVCLEHPSVSRYHAVLQHRASGPDGE--CDSNG 82 (130)
T ss_dssp CSCCCCTTBCCCCSCCEEEEEETTEEEEEEECTTCSEEEEESST-TSSEECCCTTSCSSCEEEEEBCCCCCC--------
T ss_pred cCCCCCCCccCCCCCEEEEEEECCeeeeeEEeCCCceEEEcCCc-CCCEEeCCCCcchhcEEEEEecccCccc--eeccC
Confidence 45999999999999999999999999999999988899999998 6999999999999999999864311000 01123
Q ss_pred eEEEEEeCCCCCceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEee
Q psy14677 421 IRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLH 468 (483)
Q Consensus 421 vr~yIiDLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~ 468 (483)
..|||+||+|+|||||||++|.++++++|++||+|+||.++++|||+.
T Consensus 83 ~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl~G 130 (130)
T 4h87_A 83 PGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQG 130 (130)
T ss_dssp CCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEETTCSEEEEEEC
T ss_pred CcceEeeCCCCCceEECCEECCCCceeECCCCCEEEECCceEEEEEcC
Confidence 469999999999999999999999999999999999999999999863
No 3
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-28 Score=222.32 Aligned_cols=121 Identities=32% Similarity=0.531 Sum_probs=101.5
Q ss_pred ceeeccCCCCCCCCCCC-------------ceEEEEeeCCC----cccEEEecccceeeeccCC--------------Cc
Q psy14677 338 GVVIKYSEPPDARKPKR-------------RWRLYPFKGDT----QLPVLHIHRQSAFLMGRDR--------------KV 386 (483)
Q Consensus 338 GVvLkysEPp~Ar~P~~-------------~WrL~VfKGge----~~eti~L~~qs~ylIGRd~--------------~~ 386 (483)
||+|+|+||++|++|.. .|.|++|+++. .++.+.|..++.|+|||++ ..
T Consensus 1 ~~~l~~~ep~~a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~ 80 (158)
T 3els_A 1 GAMGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVV 80 (158)
T ss_dssp ----CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCC
T ss_pred CceeEecCCccccCCchhhhccccCcccCCceEEEEEeCCccCcccceEEEecCCCceEecccccccccccccccccccc
Confidence 78999999999999953 46799999886 6789999999999999995 35
Q ss_pred cceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCCceEEcCCCCEEEEcCcc----e
Q psy14677 387 ADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSS----R 462 (483)
Q Consensus 387 cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG~ST----R 462 (483)
|||+|++++|||+||+|++... + +...|+|+||+|+|||||||++|.++.+++|++||+|+||.++ .
T Consensus 81 ~Di~l~~~~VSr~HA~I~~~~~------~---~~~~~~l~Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s~~~~~~ 151 (158)
T 3els_A 81 ADIGIPEETSSKQHCVIQFRNV------R---GILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDNDY 151 (158)
T ss_dssp CSEEECCTTSCSSCEEEEEEEE------T---TEEEEEEEECSCSSCCEETTEECCTTCCEECCTTEEEESSSCGGGCCE
T ss_pred CCEEcCCCCCCcccEEEEEEcc------C---CeeEEEEEeCCCCCccEECCEEcCCCceEEcCCCCEEEECCCCCCCCE
Confidence 9999999999999999998752 1 2346999999999999999999999999999999999999764 5
Q ss_pred EEEEe
Q psy14677 463 EYVLL 467 (483)
Q Consensus 463 eYVLl 467 (483)
+|+++
T Consensus 152 elvF~ 156 (158)
T 3els_A 152 ELIFM 156 (158)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 4
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.94 E-value=3.1e-27 Score=208.01 Aligned_cols=135 Identities=30% Similarity=0.535 Sum_probs=115.9
Q ss_pred CCccccccccccCCceeeccCCCCCCCCCCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEE
Q psy14677 324 GLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAAL 403 (483)
Q Consensus 324 ~~SG~LaedsNt~nGVvLkysEPp~Ar~P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvI 403 (483)
+.++.|+.+++.... .+.|.+|.||..|...|.|.+++++..+..+.|.....++|||++..|||+|+++.|||.||.|
T Consensus 4 g~~~~~~~~~~~~~~-~~~~~~P~~a~~p~~~~~L~v~~g~~~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i 82 (140)
T 2jpe_A 4 GSPNSMAAAVNSGSS-LPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAAL 82 (140)
T ss_dssp -----CCCCCCSSSC-CCSCCCCSSBCCCCSSCBEEEESSSSEEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEE
T ss_pred CcCCcccccccccCC-ccccCCCCcccCCCcCEEEEEEcCCCcceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEE
Confidence 456778888888876 5699999999999999999999999888899998766799999984499999999999999999
Q ss_pred EEeecccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEeecC
Q psy14677 404 QYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEH 470 (483)
Q Consensus 404 q~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~e~ 470 (483)
.+... ++ .|+|+||+|+|||||||++|.++.++.|.+||+|+||.+++.|+|....
T Consensus 83 ~~~~~-----~~------~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G~~~~~f~~~~~p 138 (140)
T 2jpe_A 83 VYHKH-----LK------RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKP 138 (140)
T ss_dssp EEBSS-----SC------CEEEECCSCSSCEESSSCEECSSSCCEECTTCCBBCSSCCCCBCCBCCC
T ss_pred EEECC-----CC------cEEEEECCCCCCeEECCEECCCCccEECCCCCEEEECCceEEEEEecCC
Confidence 98631 12 5999999999999999999998888999999999999999999876543
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.88 E-value=2.8e-22 Score=168.52 Aligned_cols=101 Identities=29% Similarity=0.380 Sum_probs=86.8
Q ss_pred CCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCC
Q psy14677 352 PKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESA 431 (483)
Q Consensus 352 P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGST 431 (483)
|+..|.|.++.|...+..+.|.....++|||++..|||+|+++.||+.||.|.+.. +| .|+|+||+|+
T Consensus 1 p~~~~~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~------~~------~~~l~Dl~S~ 68 (106)
T 3gqs_A 1 QPSRFLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN------DN------SVLIEDLGSK 68 (106)
T ss_dssp --CEEEEEECC-CCTTCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT------TS------CEEEEECSCS
T ss_pred CCceEEEEEEeCCCCcEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC------CC------cEEEEECcCC
Confidence 56789999999999999999988778999999745999999999999999998852 23 5999999999
Q ss_pred CceEecCEEcCCCceEEcCCCCEEEEcCcceEEEE
Q psy14677 432 NGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVL 466 (483)
Q Consensus 432 NGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVL 466 (483)
|||||||++|.+ ++.|.+||+|+||.+.+.|+-
T Consensus 69 nGt~vng~~i~~--~~~L~~Gd~i~~G~~~~~~~~ 101 (106)
T 3gqs_A 69 NGVIVEGRKIEH--QSTLSANQVVALGTTLFLLVD 101 (106)
T ss_dssp SCCEETTEECSS--EEECCTTCCEEETTEEEEEEE
T ss_pred CCeEECCEECCC--CeECCCCCEEEECCEEEEEEc
Confidence 999999999986 579999999999988766653
No 6
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.86 E-value=1.5e-21 Score=166.50 Aligned_cols=105 Identities=29% Similarity=0.352 Sum_probs=90.8
Q ss_pred CCCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCC
Q psy14677 351 KPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLES 430 (483)
Q Consensus 351 ~P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGS 430 (483)
.+...|.|.++.|...+..+.|.....++|||++..|||+|+++.||+.||.|.+.. + .|+|+||+|
T Consensus 8 ~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-------~------~~~l~Dl~S 74 (118)
T 1uht_A 8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-------G------NWVIQDLGS 74 (118)
T ss_dssp CCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-------S------SEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC-------C------EEEEEECCC
Confidence 334578999999988888899977668999999336999999999999999999753 2 599999999
Q ss_pred CCceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEee
Q psy14677 431 ANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLH 468 (483)
Q Consensus 431 TNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~ 468 (483)
+|||||||++|.++.++.|.+||+|+||...+.|+.+.
T Consensus 75 ~nGT~vng~~l~~~~~~~L~~gd~i~lG~~~~~~~~~~ 112 (118)
T 1uht_A 75 SNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFV 112 (118)
T ss_dssp SSCCEESSSBCCTTCEEECCTTEEEEETTTEEEEEEEE
T ss_pred CCCeEECCEECCCCCeEEcCCCCEEEECCeEEEEEEEe
Confidence 99999999999998899999999999999876665544
No 7
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.84 E-value=4.1e-20 Score=164.75 Aligned_cols=107 Identities=26% Similarity=0.291 Sum_probs=81.6
Q ss_pred CCceE-EEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCC
Q psy14677 353 KRRWR-LYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESA 431 (483)
Q Consensus 353 ~~~Wr-L~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGST 431 (483)
...|. |.++. +..+..+.|..+..++|||++ .|||+|+++.||+.||.|.+....... .....|+|+|| |+
T Consensus 15 ~~~~~~L~~~~-~~~g~~~~l~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~-----~~~~~~~l~Dl-S~ 86 (151)
T 2jqj_A 15 YTCLGHLVNLI-PGKEQKVEITNRNVTTIGRSR-SCDVILSEPDISTFHAEFHLLQMDVDN-----FQRNLINVIDK-SR 86 (151)
T ss_dssp CCEEEEEEEEE-TTEEEEEEEECCSCEEEESST-TSSEECCCTTCCTTSEEEEEEEEEETT-----EEEEEEEEEEC-CS
T ss_pred CCceEEEEEec-CCCceEEEEcCCCeEEeCCCC-CCCEEECCCCCccccCEEEEecccCCc-----CcCCEEEEEEC-CC
Confidence 34554 44444 446778888766789999998 699999999999999999984211000 01237999999 99
Q ss_pred CceEecCEEcCCCceEEcCCCCEEEEcCc-ceEEEEee
Q psy14677 432 NGTFVNNKKIDPKRYVELLEKDVIKFGFS-SREYVLLH 468 (483)
Q Consensus 432 NGTFVNGeRI~p~r~veLkdGDvIrFG~S-TReYVLl~ 468 (483)
|||||||++|.++ ++.|.+||+|.||.+ .+.|.+..
T Consensus 87 NGT~VNg~~i~~~-~~~L~~GD~I~lG~~~~~~f~~~~ 123 (151)
T 2jqj_A 87 NGTFINGNRLVKK-DYILKNGDRIVFGKSCSFLFKYAS 123 (151)
T ss_dssp SCEEETTEECCSS-CEEECSSEEEEETTTEEEEEEECS
T ss_pred CCeEECCEEcCCC-ceECCCCCEEEECCCcEEEEEEcC
Confidence 9999999999987 899999999999984 34444433
No 8
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.83 E-value=4.5e-20 Score=168.35 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=84.9
Q ss_pred CCCCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCC
Q psy14677 350 RKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLE 429 (483)
Q Consensus 350 r~P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLG 429 (483)
..|...|.|.+..|...+..+.|.. ..++|||++ .|||+|+++.|||+||.|.+.. | .|+|+||+
T Consensus 50 ~~p~~~~~L~v~~G~~~g~~~~L~~-~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~-------~------~~~l~Dlg 114 (162)
T 2kfu_A 50 GLPPGSALLVVKRGPNAGSRFLLDQ-AITSAGRHP-DSDIFLDDVTVSRRHAEFRLEN-------N------EFNVVDVG 114 (162)
T ss_dssp SCCSSCCEEEEEESTTCSCEEETTS-SEEEEESCS-SSSEESTTTSSSSCSEEEEEET-------T------EEEEECCC
T ss_pred cCCCccEEEEEEeCCCCCeEEEECC-CCEEECCCC-CCCEEECCCCcChhhEEEEEEC-------C------EEEEEECC
Confidence 3455678999999988888898874 689999998 6999999999999999998852 3 69999999
Q ss_pred CCCceEecCEEcCCCceEEcCCCCEEEEcCcceEEE
Q psy14677 430 SANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYV 465 (483)
Q Consensus 430 STNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYV 465 (483)
|+|||||||++|. .+.|.+||+|+||...+.|.
T Consensus 115 S~NGT~VNg~~i~---~~~L~~GD~I~iG~~~l~f~ 147 (162)
T 2kfu_A 115 SLNGTYVNREPVD---SAVLANGDEVQIGKFRLVFL 147 (162)
T ss_dssp CSSCEEETTBCCS---EEECCSSCEEEETTEEEEEE
T ss_pred CCCCeEECCEEcc---eEECCCCCEEEECCEEEEEE
Confidence 9999999999998 37999999999998655444
No 9
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.83 E-value=4.7e-20 Score=157.20 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=84.0
Q ss_pred CCCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCC
Q psy14677 351 KPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLES 430 (483)
Q Consensus 351 ~P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGS 430 (483)
.|+..|.|.++.|...+..+.|.. ..++|||++ .|||+|+++.||+.||.|.+.. + .|+|+||+|
T Consensus 7 ~p~~~~~L~v~~g~~~g~~~~l~~-~~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~~-------~------~~~l~Dl~S 71 (115)
T 2xt9_B 7 LPSGSALLVVKRGPNAGSRFLLDQ-PTTSAGRHP-DSDIFLDDVTVSRRHAEFRLEG-------G------EFQVVDVGS 71 (115)
T ss_dssp -CCSCEEEEEEESTTTTCEEEECS-SEEEEESST-TSSEECCSTTSCSSCEEEEEET-------T------EEEEEECSC
T ss_pred CCCCcEEEEEEeCCCCCeEEEECC-CCEEECCCC-CCCEEeCCcccChhheEEEEEC-------C------EEEEEECCC
Confidence 355668999999988888999975 579999998 6999999999999999999862 3 699999999
Q ss_pred CCceEecCEEcCCCceEEcCCCCEEEEcCcceEEE
Q psy14677 431 ANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYV 465 (483)
Q Consensus 431 TNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYV 465 (483)
+|||||||++|. .+.|.+||+|+||...+.|.
T Consensus 72 ~nGt~vng~~i~---~~~L~~gd~i~iG~~~l~~~ 103 (115)
T 2xt9_B 72 LNGTYVNREPVD---SAVLANGDEVQIGKFRLVFL 103 (115)
T ss_dssp SSCEEETTEECS---EEEECTTCEEEETTEEEEEE
T ss_pred CCCeEECCEEcc---eEECCCCCEEEECCEEEEEE
Confidence 999999999998 47999999999998654443
No 10
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.83 E-value=2.5e-20 Score=164.43 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=86.6
Q ss_pred eEEEEeeCCC-cccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCce
Q psy14677 356 WRLYPFKGDT-QLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGT 434 (483)
Q Consensus 356 WrL~VfKGge-~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGT 434 (483)
..|.++.++. .+..+.|.. ..++|||++ .|||+|+++.|||.||.|.+... ++ .|+|+||+|+|||
T Consensus 25 g~L~v~~g~~~~g~~~~L~~-~~~~IGR~~-~~di~l~d~~VSr~HA~i~~~~~-----~~------~~~l~Dl~S~NGT 91 (132)
T 3va4_A 25 GQLRLFSGTHGPERDFPLYL-GKNVVGRSP-DCSVALPFPSISKQHAVIEISAW-----NK------APILQDCGSLNGT 91 (132)
T ss_dssp EEEEECCBTTBSCEEEEECS-EEEEEESST-TSSEECCCTTSCTTCEEEEECST-----TS------CCEEEECSCSSCE
T ss_pred EEEEEEeCCCCCceEEEECC-CCEEEccCC-CCCEEeCCCCcChhHEEEEEEcC-----CC------EEEEEECCCCCCe
Confidence 3799999887 788889865 578999998 59999999999999999988631 22 5999999999999
Q ss_pred EecCEE--cCCCceEEcCCCCEEEEcCcceEEEEee
Q psy14677 435 FVNNKK--IDPKRYVELLEKDVIKFGFSSREYVLLH 468 (483)
Q Consensus 435 FVNGeR--I~p~r~veLkdGDvIrFG~STReYVLl~ 468 (483)
||||++ |.++.++.|++||+|.||...+.|....
T Consensus 92 ~vNg~~i~l~~~~~~~L~~GD~I~lG~~~l~f~~~~ 127 (132)
T 3va4_A 92 QIVKPPRVLPPGVSHRLRDQELILFADFPCQYHRLD 127 (132)
T ss_dssp EETTTTEEECTTCCEECCTTCEEEETTEEEEEEECC
T ss_pred EECCEEcccCCCCEEECCCCCEEEECCEEEEEEECC
Confidence 999998 6777889999999999999988887654
No 11
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.82 E-value=6.8e-20 Score=161.35 Aligned_cols=105 Identities=24% Similarity=0.335 Sum_probs=90.6
Q ss_pred CceEEEEeeCCCcccEEEeccc----ceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCC
Q psy14677 354 RRWRLYPFKGDTQLPVLHIHRQ----SAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLE 429 (483)
Q Consensus 354 ~~WrL~VfKGge~~eti~L~~q----s~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLG 429 (483)
..|.|.++.|...+..+.|... ..++|||++ .|||+|+++.|||.||.|.+... .+ .|+|+||+
T Consensus 6 ~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~~~-----~~------~~~l~Dlg 73 (139)
T 1mzk_A 6 SWLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVS-PSDLALKDSEVSGKHAQITWNST-----KF------KWELVDMG 73 (139)
T ss_dssp EEEEEEECSSTTCSCEEEECTTCSTTCSEEEESSS-SCSEECCCTTSSSEEEEEEEETT-----TT------EEEEEETT
T ss_pred CeEEEEEEeCCCCCeEEEecCCCCccceEEeeCCC-CCCEEeCCCCCChHHcEEEEECC-----CC------EEEEEECC
Confidence 4578999999888889999764 369999998 59999999999999999998631 12 69999999
Q ss_pred CCCceEecCEEcCC--------CceEEcCCCCEEEEcCcceEEEEeecC
Q psy14677 430 SANGTFVNNKKIDP--------KRYVELLEKDVIKFGFSSREYVLLHEH 470 (483)
Q Consensus 430 STNGTFVNGeRI~p--------~r~veLkdGDvIrFG~STReYVLl~e~ 470 (483)
|+|||||||++|.+ +.++.|.+||+|+||...+.|+.....
T Consensus 74 S~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~~~~~~~~~ 122 (139)
T 1mzk_A 74 SLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQ 122 (139)
T ss_dssp CSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSSSCEEEEEEEEC
T ss_pred CCCCEEECCEECcCcccccccCCceEECCCCCEEEECCEEEEEEEcCCC
Confidence 99999999999984 678999999999999998888766543
No 12
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.82 E-value=1.1e-19 Score=162.23 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=85.4
Q ss_pred CCCCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCC
Q psy14677 350 RKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLE 429 (483)
Q Consensus 350 r~P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLG 429 (483)
..|...|.|.+..|...+..+.|.. ..++|||++ .|||+|+++.|||.||.|.+.. | .|+|.||+
T Consensus 41 ~~p~~~~~L~v~~G~~~g~~~~L~~-~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~-------~------~~~l~Dlg 105 (143)
T 2kb3_A 41 NLPAGSALLVVKRGPNAGARFLLDQ-PTTTAGRHP-ESDIFLDDVTVSRRHAEFRINE-------G------EFEVVDVG 105 (143)
T ss_dssp TCSSSCEEEEEEESTTTTCEEEECS-SEEEESSCT-TCSBCCCCSSCCSSSEEEEEET-------T------EEEEEESC
T ss_pred cCCCccEEEEEEeCCCCCeEEEeCC-CCeeccCCC-CCCEEeCCCCcChhhEEEEEEC-------C------EEEEEECC
Confidence 3456689999999988888999964 589999998 6999999999999999998852 3 69999999
Q ss_pred CCCceEecCEEcCCCceEEcCCCCEEEEcCcceEEE
Q psy14677 430 SANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYV 465 (483)
Q Consensus 430 STNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYV 465 (483)
|+|||||||++|. .+.|.+||+|+||...+.|.
T Consensus 106 S~NGT~VNg~~i~---~~~L~~GD~I~iG~~~l~f~ 138 (143)
T 2kb3_A 106 SLNGTYVNREPRN---AQVMQTGDEIQIGKFRLVFL 138 (143)
T ss_dssp CSSCCEETTEECS---EEECCTTEEEEETTEEEEEE
T ss_pred CcCCeEECCEEcc---eEECCCCCEEEECCEEEEEE
Confidence 9999999999998 47999999999998755554
No 13
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.81 E-value=1.4e-19 Score=158.86 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=84.1
Q ss_pred CceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeC-----
Q psy14677 354 RRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDL----- 428 (483)
Q Consensus 354 ~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDL----- 428 (483)
..+.|+++.++.....+.|.. ..++|||++ .|||+|+++.|||.||.|.+... .+| ...|+|+||
T Consensus 9 ~~~~~lvv~~~~~~~~~~l~~-~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~----~~g----~~~~~l~Dl~~~~~ 78 (131)
T 3hx1_A 9 LQEHILIILDDAGRREVLLTE-TFYTIGRSP-RADIRIKSQFVSRIHAVLVRKSS----DDV----QAAYRIIDGDEDGQ 78 (131)
T ss_dssp CCEEEEEEEETTEEEEEEECS-SEEEEESST-TSSEECCCSSSCTTCEEEEEC--------------CCEEEEESCTTSC
T ss_pred CcceEEEEECCCCcEEEEECC-CCEEECCCC-CCCEEECCCCcChhheEEEEEcc----CCC----ceEEEEEECCCCCC
Confidence 456777787777777888865 579999998 59999999999999999987631 112 124999999
Q ss_pred CCCCceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEeecCC
Q psy14677 429 ESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHS 471 (483)
Q Consensus 429 GSTNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~e~S 471 (483)
+|+|||||||++|.. +.|.+||+|+||...+.|+.....+
T Consensus 79 ~S~NGT~vNg~~i~~---~~L~~GD~I~iG~~~~~~~~~~~~d 118 (131)
T 3hx1_A 79 SSVNGLMINGKKVQE---HIIQTGDEIVMGPQVSVRYEYRRRD 118 (131)
T ss_dssp CCSSCEEETTEEESE---EECCTTCEEECSTTCEEEEEEECC-
T ss_pred CCCCceEECCEEeEe---EECCCCCEEEECCEEEEEEEEecCC
Confidence 799999999999985 8999999999999987777666544
No 14
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.81 E-value=1e-19 Score=157.52 Aligned_cols=105 Identities=29% Similarity=0.259 Sum_probs=83.5
Q ss_pred CCCCCCCCCceEEEEeeC-CCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEE
Q psy14677 346 PPDARKPKRRWRLYPFKG-DTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLY 424 (483)
Q Consensus 346 Pp~Ar~P~~~WrL~VfKG-ge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~y 424 (483)
|.++......+.|+++.+ +..+..+.|.. ..++|||++ .|||+|+++.||+.||.|.+.. | .|+
T Consensus 3 p~~~g~~~~~~~L~v~~~~~~~g~~~~l~~-~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~~-------~------~~~ 67 (128)
T 1r21_A 3 PEFPGGMWPTRRLVTIKRSGVDGPHFPLSL-STCLFGRGI-ECDIRIQLPVVSKQHCKIEIHE-------Q------EAI 67 (128)
T ss_dssp ------CCCCEEEEEEEETTEEEEEEECCS-SEEEEESST-TSSEECCCTTSCTTCEEEEECS-------S------CEE
T ss_pred CCcCCCCCCceEEEEEeCCCCCceEEEECC-CCEEECCCC-CCCEEECCCCCChhHEEEEEEC-------C------EEE
Confidence 344444444568888874 66677888865 679999998 5999999999999999999852 2 599
Q ss_pred EEeCCCCCceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEe
Q psy14677 425 IIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLL 467 (483)
Q Consensus 425 IiDLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl 467 (483)
|.||+|+|||||||++|.. ++.|.+||+|.||...+.|...
T Consensus 68 l~Dl~S~nGt~vNg~~i~~--~~~L~~Gd~i~iG~~~~~~~~~ 108 (128)
T 1r21_A 68 LHNFSSTNPTQVNGSVIDE--PVRLKHGDVITIIDRSFRYENE 108 (128)
T ss_dssp ECCCCSSSCCEETTEECSS--CEECCTTEEEECSSCEEEEEEC
T ss_pred EEECCCCCCEEECCEECCC--cEEcCCCCEEEECCEEEEEEeC
Confidence 9999999999999999984 6899999999999876666554
No 15
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.80 E-value=1.8e-19 Score=163.25 Aligned_cols=115 Identities=22% Similarity=0.329 Sum_probs=95.1
Q ss_pred eeeccCCCCCCCCCCCceEEEEeeCCCcccEEEeccc----------ceeeeccCCCccceeeCCC-CcCccceEEEEee
Q psy14677 339 VVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQ----------SAFLMGRDRKVADIPVDHP-SCSKQHAALQYRL 407 (483)
Q Consensus 339 VvLkysEPp~Ar~P~~~WrL~VfKGge~~eti~L~~q----------s~ylIGRd~~~cDIvLdDP-SISRqHAvIq~r~ 407 (483)
+..+|+. ++..++..|.|+++.|...+..+.|... ..++|||++ .|||+|+++ .||+.||.|.+..
T Consensus 19 ~i~~~~~--e~~~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~-~~di~l~d~~~vSr~Ha~I~~~~ 95 (164)
T 1g3g_A 19 LIEKFSQ--EQIGENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNP-ACDYHLGNISRLSNKHFQILLGE 95 (164)
T ss_dssp HHHHHHC--CCCCSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSS-SSSEECCCCTTTTSSCEEEEECS
T ss_pred eeeeccc--cccCCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCC-CCCEEeCCcCCcChhHEEEEECC
Confidence 4455653 5556677899999999988888888742 379999998 599999998 6999999998842
Q ss_pred cccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCCceEEcCCCCEEEEcCc----ceEEEEeec
Q psy14677 408 TDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFS----SREYVLLHE 469 (483)
Q Consensus 408 ~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG~S----TReYVLl~e 469 (483)
+| .|+|.|| |+|||||||++|.++.++.|.+||+|.||.+ ...|++...
T Consensus 96 ------~g------~~~l~Dl-S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~ 148 (164)
T 1g3g_A 96 ------DG------NLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIN 148 (164)
T ss_dssp ------TT------CEEEEEC-CSSCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEEC
T ss_pred ------CC------CEEEEEC-CCCCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeC
Confidence 23 5999999 9999999999999988999999999999985 456666543
No 16
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.80 E-value=6.4e-19 Score=154.96 Aligned_cols=92 Identities=23% Similarity=0.373 Sum_probs=78.4
Q ss_pred CCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCC----cCccceEEEEeecccccCCCCCCceeEEEEEeC
Q psy14677 353 KRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPS----CSKQHAALQYRLTDYTREDGSKGKRIRLYIIDL 428 (483)
Q Consensus 353 ~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPS----ISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDL 428 (483)
...|.|... |.....+.|.....++|||++ .|||+|+++. |||.||.|.+.. +| .|+|+||
T Consensus 7 ~~~w~l~~~--G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~------~g------~~~l~Dl 71 (138)
T 2pie_A 7 GRSWCLRRV--GMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP------EG------QWTIMDN 71 (138)
T ss_dssp CEEEEEEET--TCSSCBEEECTTCCEEEESSS-SSSEECCCSSCTTSSCSSCEEEEECT------TS------CEEEEEC
T ss_pred CccEEEEEe--CCCCCEEEecCCCeEEECCCC-CCCEEeCCCCcCCCCChhHeEEEEcC------CC------cEEEEEC
Confidence 346876554 334457888766789999998 6999999998 999999998742 23 5999999
Q ss_pred CCCCceEecCEEcCCCceEEcCCCCEEEEcC
Q psy14677 429 ESANGTFVNNKKIDPKRYVELLEKDVIKFGF 459 (483)
Q Consensus 429 GSTNGTFVNGeRI~p~r~veLkdGDvIrFG~ 459 (483)
+|+|||||||++|.++.++.|.+||+|.||.
T Consensus 72 ~S~NGT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 72 KSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCSSCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CCCCCeEECCEEcCCCCcEECCCCCEEEECC
Confidence 9999999999999998899999999999998
No 17
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.79 E-value=1.1e-18 Score=144.98 Aligned_cols=91 Identities=24% Similarity=0.333 Sum_probs=76.2
Q ss_pred EEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceEe
Q psy14677 357 RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFV 436 (483)
Q Consensus 357 rL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFV 436 (483)
.|.+..+ .+..+.|.. ..++|||++ .|||+|+++.||+.||.|.+.. | .|+|+|++|+|||||
T Consensus 7 ~l~~~~g--~g~~~~l~~-~~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~~-------~------~~~l~Dl~S~nGt~v 69 (100)
T 3po8_A 7 TLQLDDG--SGRTYQLRE-GSNIIGRGQ-DAQFRLPDTGVSRRHLEIRWDG-------Q------VALLADLNSTNGTTV 69 (100)
T ss_dssp EEEECSS--SCCEEECCS-EEEEEESST-TCSEECCCTTSCSSCEEEEECS-------S------CEEEEECSCSSCCEE
T ss_pred EEEEECC--CCcEEEECC-CCEEEeCCC-CCCEECCCCCcChhhCEEEEeC-------C------EEEEEECCCCCCEEE
Confidence 4444433 477888865 469999998 6999999999999999999752 2 599999999999999
Q ss_pred cCEEcCCCceEEcCCCCEEEEcCcceEEEEe
Q psy14677 437 NNKKIDPKRYVELLEKDVIKFGFSSREYVLL 467 (483)
Q Consensus 437 NGeRI~p~r~veLkdGDvIrFG~STReYVLl 467 (483)
||++|. +++|.+||+|.||...+.|.+.
T Consensus 70 ng~~i~---~~~L~~gd~i~iG~~~~~~~~~ 97 (100)
T 3po8_A 70 NNAPVQ---EWQLADGDVIRLGHSEIIVRMH 97 (100)
T ss_dssp TTEECS---EEECCTTCEEEETTEEEEEEEE
T ss_pred CCEECc---eEECCCCCEEEECCEEEEEEEE
Confidence 999998 4799999999999987776653
No 18
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.78 E-value=2.5e-19 Score=158.96 Aligned_cols=92 Identities=23% Similarity=0.374 Sum_probs=79.0
Q ss_pred CCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCC----cCccceEEEEeecccccCCCCCCceeEEEEEeC
Q psy14677 353 KRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPS----CSKQHAALQYRLTDYTREDGSKGKRIRLYIIDL 428 (483)
Q Consensus 353 ~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPS----ISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDL 428 (483)
...|.|. ..+.....+.|.....++|||++ .|||+|+++. |||.||.|.+.. +| .|+|+||
T Consensus 15 ~~~w~L~--~~G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~------~g------~~~l~Dl 79 (145)
T 2csw_A 15 GRSWCLR--RVGMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP------EG------QWTIMDN 79 (145)
T ss_dssp SEEEEEC--CTTCSCCBEECCTTCCEEEESST-TSSEECCCSSCGGGSCTTCEEEEECT------TS------CEEEEBS
T ss_pred CccEEEE--EeCCCCCeEEeCCCCcEEECCCC-CCCEEECCCCcCCCCChhHeEEEEcC------CC------eEEEEEC
Confidence 4468877 34444567888777789999998 6999999998 999999998842 23 5999999
Q ss_pred CCCCceEecCEEcCCCceEEcCCCCEEEEcC
Q psy14677 429 ESANGTFVNNKKIDPKRYVELLEKDVIKFGF 459 (483)
Q Consensus 429 GSTNGTFVNGeRI~p~r~veLkdGDvIrFG~ 459 (483)
+|+|||||||++|.++.++.|++||+|.||.
T Consensus 80 ~S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 80 KSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp SCSSCEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CCCCCeEECCEECCCCccEECCCCCEEEECC
Confidence 9999999999999998899999999999998
No 19
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.78 E-value=1.3e-18 Score=155.02 Aligned_cols=104 Identities=25% Similarity=0.420 Sum_probs=81.4
Q ss_pred CCce-EEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCC---------cCccceEEEEeecccccCCCCCCceeE
Q psy14677 353 KRRW-RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPS---------CSKQHAALQYRLTDYTREDGSKGKRIR 422 (483)
Q Consensus 353 ~~~W-rL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPS---------ISRqHAvIq~r~~~~~~edG~~~~~vr 422 (483)
...| +|+++.++ ...+.|.. ..++|||++ .|||+|+++. |||.||.|.+... + .....
T Consensus 27 ~~~w~~L~~~~~~--~~~i~L~~-~~~~IGR~~-~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~------~--~~~~~ 94 (149)
T 1gxc_A 27 PAPWARLWALQDG--FANLECVN-DNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVG------P--KNSYI 94 (149)
T ss_dssp --CCEEEEECSTT--CCCEEECS-SEEEEESST-TCSEECCCGGGGGSSGGGGSCTTCEEEEEEEC------T--TSSEE
T ss_pred CCeeEEEEEcCCC--CceEEECC-CCEEecCCC-CCCEEECCccccccccCCcCchhheEEEEECC------C--CceeE
Confidence 3456 55555543 34577764 689999998 6999999995 9999999988642 1 11347
Q ss_pred EEEEeCCCCCceEecCEEcCCCceEEcCCCCEEEEcCcc-eEEEEeec
Q psy14677 423 LYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSS-REYVLLHE 469 (483)
Q Consensus 423 ~yIiDLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG~ST-ReYVLl~e 469 (483)
|+|.|+ |+|||||||++|.++.++.|++||+|.||... ..|+|...
T Consensus 95 ~~i~D~-StNGT~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 95 AYIEDH-SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp EEEEEC-CSSCEEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred EEEEEC-CCCCeEECCEECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 999997 99999999999999999999999999999875 56666554
No 20
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.78 E-value=3.2e-19 Score=151.46 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=81.2
Q ss_pred EEEEeeCCCcccEEEecccceeeeccCCCccceeeCC-CCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceE
Q psy14677 357 RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDH-PSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTF 435 (483)
Q Consensus 357 rL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdD-PSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTF 435 (483)
+|+++.++.....+.|.. ..++|||++ .|||+|.+ +.|||.||.|.+... +| .|+|.| +|+||||
T Consensus 6 ~L~~~~~~~~~~~~~l~~-~~~~iGR~~-~~di~l~~~~~vSr~Ha~i~~~~~-----~~------~~~l~D-~S~NGt~ 71 (116)
T 1lgp_A 6 RLLRLGAEEGEPHVLLRK-REWTIGRRR-GCDLSFPSNKLVSGDHCRIVVDEK-----SG------QVTLED-TSTSGTV 71 (116)
T ss_dssp EECCTTCCSSSCCEEECS-SEEEEESST-TSSEECTTCTTSCTTCEEEEECTT-----TC------CEEEEE-CSSSCCC
T ss_pred EEEEeCCCCCccEEEECC-CCEEECCCC-CCCEEeCCCCCCChhHeEEEEECC-----CC------eEEEEE-CCcCCcE
Confidence 566676656667788864 689999998 69999986 499999999988521 23 599999 9999999
Q ss_pred ecCEEcCCCceEEcCCCCEEEEcCc------ceEEEEeec
Q psy14677 436 VNNKKIDPKRYVELLEKDVIKFGFS------SREYVLLHE 469 (483)
Q Consensus 436 VNGeRI~p~r~veLkdGDvIrFG~S------TReYVLl~e 469 (483)
|||++|.++.++.|.+||+|.||.. ...|+|...
T Consensus 72 vng~~l~~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~ 111 (116)
T 1lgp_A 72 INKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESL 111 (116)
T ss_dssp CCCCCCCCSSCCCCCTTCEEEEECCSSCGGGCEEEECCCS
T ss_pred ECCEEcCCCCcEECCCCCEEEEeccCCCCCceEEEEEEcc
Confidence 9999999988899999999999986 356665443
No 21
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.78 E-value=7.4e-19 Score=158.58 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=85.3
Q ss_pred EEEEeeCCCcccEEEeccc-ceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCC------CCceeEEEEEeCC
Q psy14677 357 RLYPFKGDTQLPVLHIHRQ-SAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGS------KGKRIRLYIIDLE 429 (483)
Q Consensus 357 rL~VfKGge~~eti~L~~q-s~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~------~~~~vr~yIiDLG 429 (483)
.|.+..+......+.|... ..++|||++ .|||+|+++.|||.||.|.+.... .|. ......|+|+|+
T Consensus 7 ~L~p~~~~~~~~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~----~g~~~~~~~~~~~~~~~l~Dl- 80 (158)
T 1dmz_A 7 TLKPLPDSIIQESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHA----VGKSMYESPAQGLDDIWYCHT- 80 (158)
T ss_dssp EEEECTTSSCCCCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECC----CCCCCSSCSCSSCEEEEEEEC-
T ss_pred EEEeCCCCccceEEEEcCCCceEEECCCC-CCCEEeCCCCcChHHeEEEEecCc----cccccccccccccccEEEEEC-
Confidence 3455555445567777643 359999998 699999999999999999986421 110 001147999999
Q ss_pred CCCceEecCEEcCCCceEEcCCCCEEEE-----cCcceEEEEeecCC
Q psy14677 430 SANGTFVNNKKIDPKRYVELLEKDVIKF-----GFSSREYVLLHEHS 471 (483)
Q Consensus 430 STNGTFVNGeRI~p~r~veLkdGDvIrF-----G~STReYVLl~e~S 471 (483)
|+|||||||++|.++.+++|.+||+|+| |.+.+.|.+....+
T Consensus 81 StNGT~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~~~~ 127 (158)
T 1dmz_A 81 GTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDT 127 (158)
T ss_dssp STTCCEETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEEEECSCC
T ss_pred CcCCeEECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEEEEEeCCC
Confidence 9999999999999999999999999999 99998898866544
No 22
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.75 E-value=2.6e-18 Score=159.01 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=78.8
Q ss_pred ccEEEeccc-ceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCC------CCceeEEEEEeCCCCCceEecCE
Q psy14677 367 LPVLHIHRQ-SAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGS------KGKRIRLYIIDLESANGTFVNNK 439 (483)
Q Consensus 367 ~eti~L~~q-s~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~------~~~~vr~yIiDLGSTNGTFVNGe 439 (483)
...+.|... ..++|||++ .|||+|+++.|||.||.|.+.... .|. ......|+|.|+ |+|||||||+
T Consensus 41 ~~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~~~----~g~~~~e~~~~~~~~~~l~Dl-StNGT~VNg~ 114 (182)
T 1qu5_A 41 QESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHA----VGKSMYESPAQGLDDIWYCHT-GTNVSYLNNN 114 (182)
T ss_dssp CSCCCBTTCCSSEEESSST-TSSSCCCCTTSCSSCEEEEEECCC----CCSSCCSSCCCSCCEEEECCC-SSSCCEETTE
T ss_pred ceEEEEcCCCceEEECCCC-CCCEEECCCCcChHHeEEEEecCc----cccccccccccccceEEEEEC-CcCCeEECCE
Confidence 456667543 359999998 699999999999999999986411 110 000147999999 9999999999
Q ss_pred EcCCCceEEcCCCCEEEE-----cCcceEEEEeecCC
Q psy14677 440 KIDPKRYVELLEKDVIKF-----GFSSREYVLLHEHS 471 (483)
Q Consensus 440 RI~p~r~veLkdGDvIrF-----G~STReYVLl~e~S 471 (483)
+|.++.+++|.+||+|.| |...+.|.+....+
T Consensus 115 ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~~~~ 151 (182)
T 1qu5_A 115 RMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDT 151 (182)
T ss_dssp ECCSSEEEECCTTBCCEEEEEGGGTEEEECCEEESCC
T ss_pred EcCCCcceEcCCCCEEEEEEcCCCCEEEEEEEEeCCC
Confidence 999999999999999999 99888887766443
No 23
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.74 E-value=4.2e-18 Score=155.34 Aligned_cols=91 Identities=23% Similarity=0.302 Sum_probs=74.3
Q ss_pred eEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceE
Q psy14677 356 WRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTF 435 (483)
Q Consensus 356 WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTF 435 (483)
|.|.+.-.+.....+.|.. ..++|||++ .|||+|+++.|||.||.|.+.. + .|+|+||+|+||||
T Consensus 66 ~~l~L~v~~g~g~~~~L~~-~~~~IGR~~-~~dI~L~d~~VSr~HA~I~~~~-------~------~~~l~DlgStNGT~ 130 (157)
T 3oun_A 66 TSVTLQLDDGSGRTYQLRE-GSNIIGRGQ-DAQFRLPDTGVSRRHLEIRWDG-------Q------VALLADLNSTNGTT 130 (157)
T ss_dssp -CCEEEETTTTCCEEECCS-EEEEEESST-TCSEECCCTTSCTTCEEEEECS-------S------CEEEEECSCSSCCE
T ss_pred cEEEEEEcCCCCeEEEECC-CcEEEEeCC-CCCEEeCCCCcChhHEEEEEEC-------C------EEEEEECCCCCCeE
Confidence 3344433333577888865 469999998 6999999999999999998752 2 59999999999999
Q ss_pred ecCEEcCCCceEEcCCCCEEEEcCcceEE
Q psy14677 436 VNNKKIDPKRYVELLEKDVIKFGFSSREY 464 (483)
Q Consensus 436 VNGeRI~p~r~veLkdGDvIrFG~STReY 464 (483)
|||++|. .++|.+||+|+||...+.|
T Consensus 131 VNG~~i~---~~~L~~GD~I~lG~~~l~f 156 (157)
T 3oun_A 131 VNNAPVQ---EWQLADGDVIRLGHSEIIV 156 (157)
T ss_dssp ETTEECS---EEECCTTCEEEETTEEEEE
T ss_pred ECCEECc---eEECCCCCEEEECCEEEEE
Confidence 9999997 4799999999999875544
No 24
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.73 E-value=1.8e-17 Score=143.67 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=68.1
Q ss_pred ceeeeccCCCccceeeCCC-CcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCCceEEcCCCCE
Q psy14677 376 SAFLMGRDRKVADIPVDHP-SCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDV 454 (483)
Q Consensus 376 s~ylIGRd~~~cDIvLdDP-SISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~r~veLkdGDv 454 (483)
..++|||++ .|||+|+++ .||+.||.|.+.. +| .|+|.|+ |+|||||||++|.++.++.|.+||+
T Consensus 36 ~~~~IGR~~-~~di~l~~~~~vSr~Ha~i~~~~------~g------~~~l~Dl-S~NGT~vNg~~l~~~~~~~L~~Gd~ 101 (127)
T 1g6g_A 36 KVWTFGRNP-ACDYHLGNISRLSNKHFQILLGE------DG------NLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDE 101 (127)
T ss_dssp EEEEEESST-TSSEECCSCTTSCSSCEEEEECT------TS------CEEEEEC-CSSCCEETTEECCTTCCEECCTTCE
T ss_pred CCEEECCCC-CCCEEeCCCCCCChhHeEEEECC------CC------cEEEEEC-CcCCeEECCEEcCCCCeEEcCCCCE
Confidence 379999999 599999998 5999999998742 23 5999999 9999999999999988999999999
Q ss_pred EEEcCcc----eEEEEee
Q psy14677 455 IKFGFSS----REYVLLH 468 (483)
Q Consensus 455 IrFG~ST----ReYVLl~ 468 (483)
|.||.+. ..|++..
T Consensus 102 I~lG~~~~~~~i~f~~~~ 119 (127)
T 1g6g_A 102 ITVGVGVESDILSLVIFI 119 (127)
T ss_dssp EEECTTSGGGCEEEEEEE
T ss_pred EEECCCccCceEEEEEEe
Confidence 9999864 4555544
No 25
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.70 E-value=6.1e-17 Score=139.15 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=75.8
Q ss_pred EEEEeeCCCc-----ccEEEecccceeeeccC-CCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCC
Q psy14677 357 RLYPFKGDTQ-----LPVLHIHRQSAFLMGRD-RKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLES 430 (483)
Q Consensus 357 rL~VfKGge~-----~eti~L~~qs~ylIGRd-~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGS 430 (483)
+|+++.++.. ...+.|.. ..++|||. ...|||+|+++.||+.||.|.+.. | .|+|.|++|
T Consensus 13 ~Lv~l~~d~~~s~~~~~~~~L~~-~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~~-------~------~~~l~dl~S 78 (120)
T 1wln_A 13 YLVELSPDGSDSRDKPKLYRLQL-SVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMD-------G------VVTVTPRSM 78 (120)
T ss_dssp EEEEECSSSCCCSSCCCEEECCS-EEEECSSSCCSTTCCCCCCTTCCSSCEEEEESS-------S------CEEEEESCS
T ss_pred EEEEeCCChhhccCccEEEEECC-CCEEECCCCCCCCcEEECCCCCchhheEEEEcC-------C------EEEEEECCC
Confidence 6777775422 45677754 56899974 236999999999999999998742 3 599999999
Q ss_pred CCceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEeec
Q psy14677 431 ANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHE 469 (483)
Q Consensus 431 TNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~e 469 (483)
+|||||||++|.. ++.|++||+|.||.. ..|.|...
T Consensus 79 ~ngt~vNg~~i~~--~~~L~~GD~I~iG~~-~~~~f~~p 114 (120)
T 1wln_A 79 DAETYVDGQRISE--TTMLQSGMRLQFGTS-HVFKFVDP 114 (120)
T ss_dssp SSCEEETSCBCSS--CEEECTTCEEEETTT-EEEEEECS
T ss_pred CCCEEECCEEcCC--CEECCCCCEEEECCc-eEEEEECC
Confidence 9999999999984 579999999999984 34555443
No 26
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.66 E-value=2.2e-16 Score=157.76 Aligned_cols=84 Identities=25% Similarity=0.273 Sum_probs=72.3
Q ss_pred cccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCCc
Q psy14677 366 QLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKR 445 (483)
Q Consensus 366 ~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~r 445 (483)
.+..+.|.. ..++|||++ .|||+|+++.||+.||.|.+.. | .|+|.||+|+|||||||++|. .
T Consensus 297 ~g~~~~l~~-~~~~iGR~~-~~di~l~~~~vSr~Ha~i~~~~-------~------~~~l~Dl~S~nGt~vng~~i~--~ 359 (388)
T 2ff4_A 297 SGRGYPLQA-AATRIGRLH-DNDIVLDSANVSRHHAVIVDTG-------T------NYVINDLRSSNGVHVQHERIR--S 359 (388)
T ss_dssp TCCEEECCS-SEEEEESST-TSSEECCCTTSCTTCEEEEECS-------S------CEEEEECSCSSCCEETTEECS--S
T ss_pred CCcEEEECC-CCEEEecCC-CCeEEECCCccChhHeEEEEEC-------C------EEEEEECCCCCCeEECCEECC--C
Confidence 456788865 579999998 5999999999999999998752 2 599999999999999999995 4
Q ss_pred eEEcCCCCEEEEcCcceEEEE
Q psy14677 446 YVELLEKDVIKFGFSSREYVL 466 (483)
Q Consensus 446 ~veLkdGDvIrFG~STReYVL 466 (483)
++.|++||+|+||...+.|.+
T Consensus 360 ~~~L~~gd~i~~G~~~~~~~~ 380 (388)
T 2ff4_A 360 AVTLNDGDHIRICDHEFTFQI 380 (388)
T ss_dssp EEEECTTCEEEETTEEEEEEC
T ss_pred ceECCCCCEEEECCEEEEEEe
Confidence 689999999999987665544
No 27
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.66 E-value=1.2e-16 Score=160.24 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=83.3
Q ss_pred eEEEEeeCCCcccEEEecccceeeeccCCC--ccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCc
Q psy14677 356 WRLYPFKGDTQLPVLHIHRQSAFLMGRDRK--VADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANG 433 (483)
Q Consensus 356 WrL~VfKGge~~eti~L~~qs~ylIGRd~~--~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNG 433 (483)
|.|..-.+-..+..+.|..+. |+|||... .++|+++|++|||+||+|+++..... +|.......++|+||||+||
T Consensus 2 WiL~~~~d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~--dg~~~~~~~l~I~DLgSknG 78 (325)
T 3huf_A 2 WIIEAEGDILKGKSRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEK--DYFTGGPCEFEVKDLDTKFG 78 (325)
T ss_dssp EEEEESTTTTTTCCEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHH--HHHHCCCCCEEEEECSCSSC
T ss_pred cEEeccCccCCCeEEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEeccccc--ccccCCcceEEEEECCCCCC
Confidence 878773222356778887765 99999973 12479999999999999999743110 11001134699999999999
Q ss_pred eEecCEEcCCCceEEcCCCCEEEEcCcceEEEEeecC
Q psy14677 434 TFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEH 470 (483)
Q Consensus 434 TFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~e~ 470 (483)
|||||++|.+..+..+.+||.|+||.....|.|....
T Consensus 79 TfVNGerI~~~~~~L~~dgd~I~fG~~~~~fRl~W~P 115 (325)
T 3huf_A 79 TKVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRS 115 (325)
T ss_dssp EEETTEECCTTCEEECSSEEEEEETTCSSCEEEEECC
T ss_pred EEECCEECCCceeeecCCCCEEEecCCcceEEEEEee
Confidence 9999999987766445689999999998888877654
No 28
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.66 E-value=6e-16 Score=139.26 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=76.5
Q ss_pred EEEEeeCCCcc--cEEEecccceeeeccCCC--ccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCC
Q psy14677 357 RLYPFKGDTQL--PVLHIHRQSAFLMGRDRK--VADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESAN 432 (483)
Q Consensus 357 rL~VfKGge~~--eti~L~~qs~ylIGRd~~--~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTN 432 (483)
+|+-+..+... -.++......++|||... .|||+|.+|.||++||.|.+... + ....++++|++|+|
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~------~---~~~~~~~~d~~S~n 110 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSR------G---GSEAVVTLEPCEGA 110 (154)
T ss_dssp EEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECT------T---SSSCEEEEEECTTC
T ss_pred eEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecC------C---CceeEEEEecCCCC
Confidence 77777665432 234444556899999752 59999999999999999988642 1 12258999999999
Q ss_pred ceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEee
Q psy14677 433 GTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLH 468 (483)
Q Consensus 433 GTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~ 468 (483)
||||||.+|.. ++.|++||+|.||.+. .|+|.+
T Consensus 111 gt~VNG~~i~~--~~~L~~GD~I~~G~~~-~Frf~~ 143 (154)
T 4ejq_A 111 DTYVNGKKVTE--PSILRSGNRIIMGKSH-VFRFNH 143 (154)
T ss_dssp CEEETTEECCS--CEECCTTCEEEETTTE-EEEEEC
T ss_pred ceEECCEEcCC--ceECCCCCEEEECCcE-EEEEcC
Confidence 99999999964 5789999999999764 466654
No 29
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.55 E-value=2.5e-14 Score=125.63 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=72.5
Q ss_pred EEEEeeCCCcc---cEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCc
Q psy14677 357 RLYPFKGDTQL---PVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANG 433 (483)
Q Consensus 357 rL~VfKGge~~---eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNG 433 (483)
+|+.+.++... -.+.|.. .++|||+. .|||+|.++.||+.||.|.+.. +| .++|+|++ +||
T Consensus 28 hLvnLn~Dp~~s~~l~y~L~~--~t~IGR~~-~~DI~L~~~~Vs~~Ha~I~~~~------~g------~~~l~dl~-~ng 91 (124)
T 3fm8_A 28 FLVNLNADPALNELLVYYLKE--HTLIGSAN-SQDIQLCGMGILPEHCIIDITS------EG------QVMLTPQK-NTR 91 (124)
T ss_dssp EEEETTCCTTSSCCCEEECCS--EEEEESST-TCSEECCSTTCCSSCEEEEECT------TS------CEEEEECT-TCC
T ss_pred EEEEeCCCCccCceEEEECCC--CeEECCCC-CCCEEECCCCeecceEEEEECC------CC------eEEEEECC-CCC
Confidence 77777765432 2455543 48999998 6999999999999999998642 33 59999995 799
Q ss_pred eEecCEEcCCCceEEcCCCCEEEEcCcceEEEEe
Q psy14677 434 TFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLL 467 (483)
Q Consensus 434 TFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl 467 (483)
|||||++|.. ++.|++||+|.||... .|.|.
T Consensus 92 t~VNG~~V~~--~~~L~~GD~I~lG~~~-~FrFn 122 (124)
T 3fm8_A 92 TFVNGSSVSS--PIQLHHGDRILWGNNH-FFRLN 122 (124)
T ss_dssp EEETTEECCS--CEEECTTCEEEETTTE-EEEEE
T ss_pred EEECCEEcCC--cEECCCCCEEEECCCe-EEEEE
Confidence 9999999984 5899999999999753 45543
No 30
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.36 E-value=3.8e-12 Score=126.04 Aligned_cols=97 Identities=26% Similarity=0.417 Sum_probs=76.3
Q ss_pred ce-EEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCc---------CccceEEEEeecccccCCCCCCceeEEE
Q psy14677 355 RW-RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSC---------SKQHAALQYRLTDYTREDGSKGKRIRLY 424 (483)
Q Consensus 355 ~W-rL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSI---------SRqHAvIq~r~~~~~~edG~~~~~vr~y 424 (483)
.| +|++..++. ..+.|.. ..|+|||+. .|||++++|.| |+.||.|..... .. ....||
T Consensus 9 ~~g~l~~~~~~~--~~~~l~~-~~~~iGR~~-~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~----~~----~~~~~~ 76 (419)
T 3i6u_A 9 PWARLWALQDGF--ANLECVN-DNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVG----PK----NSYIAY 76 (419)
T ss_dssp CSEEEEECSSSS--CCEEECS-SEEEEESST-TSSEETTCTTGGGCSGGGGSCTTCEEEECCEE----TT----TEECCE
T ss_pred CceEeeecCCCC--CceEecC-CCEEecCCC-ccCEEECCcccccccccccccccceEEEEEcC----CC----CceEEE
Confidence 35 565555543 3567754 689999998 69999999986 999999965421 11 234599
Q ss_pred EEeCCCCCceEecCEEcCCCceEEcCCCCEEEEcCcceEE
Q psy14677 425 IIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREY 464 (483)
Q Consensus 425 IiDLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG~STReY 464 (483)
|.| +|+|||||||.++.++...+|.+||.|+||.+....
T Consensus 77 i~D-~S~nGt~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~ 115 (419)
T 3i6u_A 77 IED-HSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKV 115 (419)
T ss_dssp EEE-CCSSCEEETTEECCTTCEEECCTTEEEEESSTTCEE
T ss_pred EEE-CCcCCceECcccccCCCcccCCCCCEeeeeccccce
Confidence 999 799999999999999999999999999999886443
No 31
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.36 E-value=1.8e-12 Score=111.71 Aligned_cols=80 Identities=19% Similarity=0.356 Sum_probs=65.3
Q ss_pred cEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCce-EecCEEcCCCce
Q psy14677 368 PVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGT-FVNNKKIDPKRY 446 (483)
Q Consensus 368 eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGT-FVNGeRI~p~r~ 446 (483)
+++.|.....|.|||++ .|+++|++|+||+.||.|.... +| .|+. . |+||| ||||+++. .
T Consensus 13 p~v~l~~~~~~rIGR~~-~~~l~LddpsVs~~HAti~~~~------~G-------~~~l-~-S~nGtVFVNGqrv~---~ 73 (102)
T 3uv0_A 13 PAILLKADTIYRIGRQK-GLEISIADESMELAHATACILR------RG-------VVRL-A-ALVGKIFVNDQEET---V 73 (102)
T ss_dssp CCEECCTTCCEEEESST-TSTEECCCTTSCTTCEEEEEEE------TT-------EEEE-E-ESSSCEEETTEEES---E
T ss_pred ccEEeecCcEEEEcCCC-CCcEEECCcccccceEEEEecC------Cc-------eEEE-E-eccCcEEECCEEee---e
Confidence 45677778899999998 7999999999999999998753 34 5553 3 99995 99999993 5
Q ss_pred EEcCCCCE------EEEcCcceEEEE
Q psy14677 447 VELLEKDV------IKFGFSSREYVL 466 (483)
Q Consensus 447 veLkdGDv------IrFG~STReYVL 466 (483)
+.|.+||. ++||+..-.+.+
T Consensus 74 ~~I~~gDtI~g~v~lrFGnvea~l~~ 99 (102)
T 3uv0_A 74 VDIGMENAVAGKVKLRFGNVEARLEF 99 (102)
T ss_dssp EEECGGGCBTTEEEEEETTEEEEEEE
T ss_pred EEccCCcccccEEEEEecCEEEEEEe
Confidence 89999999 999977544433
No 32
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.31 E-value=6.4e-12 Score=111.27 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=81.8
Q ss_pred CceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCc
Q psy14677 354 RRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANG 433 (483)
Q Consensus 354 ~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNG 433 (483)
..|+|.++.|...+..+.|.. ..++||.++-.|||+|.|+.||+.||.|.+.. + .|+|. +|+||
T Consensus 3 ~~~klrvlsG~~~G~~l~L~~-~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~------~-------g~~L~--~s~ng 66 (123)
T 4a0e_A 3 GSWVCRFYQGKHRGVEVELPH-GRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDE------E-------GIRLT--DSAEP 66 (123)
T ss_dssp CCEEEEECSGGGTTCEEEECS-EEEEEESCTTTCSEECCCTTSCSSCEEEEEET------T-------EEEEE--EESSC
T ss_pred ceEEEEEecCCCCCcEEEcCC-CcEEECCCCCCCCEEEeCCCccceeEEEEECC------C-------eEEEE--eccCC
Confidence 369999999999999999976 58999999624999999999999999999863 2 58887 79999
Q ss_pred eEecCEEcCCCceEEcCCCCEEEEcCcceEEEE
Q psy14677 434 TFVNNKKIDPKRYVELLEKDVIKFGFSSREYVL 466 (483)
Q Consensus 434 TFVNGeRI~p~r~veLkdGDvIrFG~STReYVL 466 (483)
|||||+++..+. .|.+|+.|.+|.....|.-
T Consensus 67 t~vdG~~v~~~~--~L~~g~~l~lG~~~l~~~~ 97 (123)
T 4a0e_A 67 LLQEGLPVPLGT--LLRAGSCLEVGFLLWTFVA 97 (123)
T ss_dssp CEETTEECCTTC--BCCTTSCEEETTEEEEEEE
T ss_pred EEECCEEccccc--ccCCCCEEEEccEEEEEEc
Confidence 999999998764 7999999999988655543
No 33
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.19 E-value=2.6e-10 Score=97.82 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=74.5
Q ss_pred cccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCCc
Q psy14677 366 QLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKR 445 (483)
Q Consensus 366 ~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~r 445 (483)
....+.|.....++|||++ .+.| .|..|||+|+.|..... .| .+.|.++| +|+|||||.+|.++.
T Consensus 13 ~~~~I~L~~g~~v~iGR~p-~t~I--~DkrcSR~h~~L~~~~~-----~g------~v~vk~lg-~Np~~vng~~l~k~~ 77 (102)
T 3kt9_A 13 RHQRIRLPHLEAVVIGRGP-ETKI--TDKKCSRQQVQLKAECN-----KG------YVKVKQVG-VNPTSIDSVVIGKDQ 77 (102)
T ss_dssp TTCEEECCBTCEEEECSST-TTCC--CCTTSCSSCEEEEEETT-----TT------EEEEEECS-SSCCEETTEECCBTC
T ss_pred CCCcEEcCCCCcEEeccCC-cccc--ccCcccCcceEEEEecC-----CC------EEEEEECc-CCCCeECCEEcCCCC
Confidence 4567889888888899998 3544 69999999999987642 23 68999995 899999999999999
Q ss_pred eEEcCCCCEEEEcCcceEEEEee
Q psy14677 446 YVELLEKDVIKFGFSSREYVLLH 468 (483)
Q Consensus 446 ~veLkdGDvIrFG~STReYVLl~ 468 (483)
.+.|.+||+|.|-...+.|.+..
T Consensus 78 ~~~L~~GD~l~Ll~~~~~~~v~f 100 (102)
T 3kt9_A 78 EVKLQPGQVLHMVNELYPYIVEF 100 (102)
T ss_dssp EEEECTTCCEEEETTEEEEEEEE
T ss_pred eEEeCCCCEEEEccCCceEEEEe
Confidence 99999999999998877777654
No 34
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.01 E-value=3.6e-09 Score=98.21 Aligned_cols=99 Identities=20% Similarity=0.262 Sum_probs=72.9
Q ss_pred EEEEeeCCCcc---cEEEecccceeeeccCC--CccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCC
Q psy14677 357 RLYPFKGDTQL---PVLHIHRQSAFLMGRDR--KVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESA 431 (483)
Q Consensus 357 rL~VfKGge~~---eti~L~~qs~ylIGRd~--~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGST 431 (483)
+|+-+..+... -.|+|.. ...+|||.. ..|||+|..+.|++.||.|..... | .....++|..+ +.
T Consensus 70 hLvnLn~Dp~ls~~l~y~L~~-g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~------~--~~~~~vtl~p~-~~ 139 (184)
T 4egx_A 70 HLVNLNEDPLMSECLLYYIKD-GITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSR------G--GSEAVVTLEPC-EG 139 (184)
T ss_dssp EEEECCCCTTCSSCSEEECCS-EEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECC------S--SCSCEEEEEEC-TT
T ss_pred eEEeccCCcccCceEEEEECC-CcCcCCCCCcCCCCeEEECccccccccEEEEEcCC------C--CceEEEEEeeC-CC
Confidence 77777665422 2455544 578999964 258999999999999999987531 1 11235777777 66
Q ss_pred CceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEee
Q psy14677 432 NGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLH 468 (483)
Q Consensus 432 NGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~ 468 (483)
++|||||.+|.. ++.|++||+|.||.+. .|+|.+
T Consensus 140 a~t~VNG~~I~~--~~~L~~GDrI~lG~~h-~Frfn~ 173 (184)
T 4egx_A 140 ADTYVNGKKVTE--PSILRSGNRIIMGKSH-VFRFNH 173 (184)
T ss_dssp CCEEETTEECCS--CEECCTTCEEEETTTE-EEEEEC
T ss_pred CeEEEcCEEccc--cEEcCCCCEEEECCCC-EEEECC
Confidence 889999999974 6899999999999764 466654
No 35
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.91 E-value=6.4e-09 Score=90.52 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=71.2
Q ss_pred EEEEeeCCCcccEEEec-ccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceE
Q psy14677 357 RLYPFKGDTQLPVLHIH-RQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTF 435 (483)
Q Consensus 357 rL~VfKGge~~eti~L~-~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTF 435 (483)
.|.+..++ ...+.|. ....++|||++ +..|.|..|||+|+.|..+.. +| .+.|.++ ++|+||
T Consensus 11 ~L~~~~~~--~~~I~Lp~~~g~~viGR~p---~t~I~DkrcSR~hv~L~ad~~-----~~------~v~vk~l-G~Np~~ 73 (110)
T 2brf_A 11 WLESPPGE--APPIFLPSDGQALVLGRGP---LTQVTDRKCSRTQVELVADPE-----TR------TVAVKQL-GVNPST 73 (110)
T ss_dssp EEECSTTS--SCCEECCSTTCCEEECSBT---TTTBCCTTSCSSCEEEEEETT-----TT------EEEEEEC-SSSCCE
T ss_pred EEEeCCCC--CCcEEeccCCCCEEEcCCC---CcccccccceeeeEEEEEecC-----CC------EEEEEEc-ccCCcE
Confidence 34444443 3478884 33579999998 345789999999999987642 23 7899999 569999
Q ss_pred ecCEEcCCCceEEcCCCCEEEEcCcceEEEEe
Q psy14677 436 VNNKKIDPKRYVELLEKDVIKFGFSSREYVLL 467 (483)
Q Consensus 436 VNGeRI~p~r~veLkdGDvIrFG~STReYVLl 467 (483)
|||.+|.++..+.|++||+|.|=...+.|.+.
T Consensus 74 vng~~l~k~~~~~L~~GD~leLl~g~y~~~v~ 105 (110)
T 2brf_A 74 TGTQELKPGLEGSLGVGDTLYLVNGLHPLTLR 105 (110)
T ss_dssp EC-CBCCTTCEEEEETTCEEEEETTEEEEEEE
T ss_pred ECCEEcCCCCEEEecCCCEEEEccCCeEEEEE
Confidence 99999999999999999999985544444443
No 36
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.84 E-value=3.8e-09 Score=101.01 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=60.4
Q ss_pred cEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCce-EecCEEcCCCce
Q psy14677 368 PVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGT-FVNNKKIDPKRY 446 (483)
Q Consensus 368 eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGT-FVNGeRI~p~r~ 446 (483)
..+.+... .++|||++ .|||+|+++ + ||.|..... .+ ...|+|.||+|+||| ||||++|...
T Consensus 85 ~~y~~~~~-~itIG~~~-~~dI~l~~~-~---~~~~~~~~~-----~~----~~~~~l~~l~s~ngtvyvNg~~i~~~-- 147 (238)
T 1wv3_A 85 FAYPSIQD-TMTIGPNA-YDDMVIQSL-M---NAIIIKDFQ-----SI----QESQYVRIVHDKNTDVYINYELQEQL-- 147 (238)
T ss_dssp EECCSSCS-EEEEESST-TSSEECTTC-S---SCEEEECGG-----GH----HHHCEEEEECCTTCCEEETTEECCSS--
T ss_pred EEEecCCc-eEEEeCCC-CCeEEeCCC-e---eEEEEeccc-----Cc----CCcEEEEEccCCCCCEEECCEEeccc--
Confidence 34555555 89999998 699999998 3 576654300 00 015999999999997 9999999764
Q ss_pred EEcC-CCCEEEEcCcceEE
Q psy14677 447 VELL-EKDVIKFGFSSREY 464 (483)
Q Consensus 447 veLk-dGDvIrFG~STReY 464 (483)
..|+ .||.|.||...++|
T Consensus 148 ~~L~~~GD~I~ig~~~~~~ 166 (238)
T 1wv3_A 148 TNKAYIGDHIYVEGIWLEV 166 (238)
T ss_dssp EEEEETTCEEEETTEEEEE
T ss_pred eeccCCcCEEEECCEEEEE
Confidence 5799 99999999875554
No 37
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.83 E-value=1.9e-08 Score=91.28 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=73.7
Q ss_pred EEEEeeCCCcccEEEec-ccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceE
Q psy14677 357 RLYPFKGDTQLPVLHIH-RQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTF 435 (483)
Q Consensus 357 rL~VfKGge~~eti~L~-~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTF 435 (483)
.|....++ ...+.|. ....++|||++ +..|.|..|||+|+.|.++.. .| .+.|.+| ++|+||
T Consensus 11 ~L~p~d~~--~~~I~Lp~~~g~vvIGRgP---et~ItDkRcSR~qv~L~ad~~-----~g------~V~Vk~l-G~NP~~ 73 (143)
T 1yj5_C 11 WLQSPTGG--PPPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPE-----SR------TVAVKQL-GVNPST 73 (143)
T ss_dssp EEECCTTS--CCCEECCTTTCEEEECSBT---TTTBCCSSSCSSCEEEEEETT-----TT------EEEEEEC-SSSCCE
T ss_pred EEEecCCC--CCcEEeccCCCCEEEcCCC---ccccccccccceeEEEEEecC-----CC------eEEEEEc-ccCCcE
Confidence 45554443 3468884 34689999998 456889999999999988642 23 6889999 569999
Q ss_pred ecCEEcCCCceEEcCCCCEEEE--cCcceEEEEee
Q psy14677 436 VNNKKIDPKRYVELLEKDVIKF--GFSSREYVLLH 468 (483)
Q Consensus 436 VNGeRI~p~r~veLkdGDvIrF--G~STReYVLl~ 468 (483)
|||.+|.++..+.|++||+|.| |.-.+.|++..
T Consensus 74 vng~~L~k~~~~~L~~GD~LeLl~g~y~f~V~f~e 108 (143)
T 1yj5_C 74 VGVHELKPGLSGSLSLGDVLYLVNGLYPLTLRWEE 108 (143)
T ss_dssp ETTEECCTTCEEEECTTCEEESSSSCSEEEEEEEE
T ss_pred ECCEEecCCCEEEecCCCEEEEecCCceEEEEecC
Confidence 9999999999999999999995 55566666644
No 38
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.73 E-value=1.4e-08 Score=89.63 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=72.0
Q ss_pred EEEEeeCCCcccEEEec-ccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceE
Q psy14677 357 RLYPFKGDTQLPVLHIH-RQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTF 435 (483)
Q Consensus 357 rL~VfKGge~~eti~L~-~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTF 435 (483)
.|.+..++ ...+.|. ....++|||++ +..|.|..|||+|+.|.++.. .| .+.|.++| +|+||
T Consensus 18 ~L~~~~~~--~~~I~Lp~~~g~~viGRgp---~t~I~DkrcSR~qv~L~ad~~-----~~------~v~vk~lG-~NP~~ 80 (119)
T 1ujx_A 18 WLQSPTGG--PPPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPE-----SR------TVAVKQLG-VNPST 80 (119)
T ss_dssp EEECCSSS--CCCCCCCTTSCCEEESBBT---TTTBCCTTSCTTSEEEEEETT-----TT------EEEEEECS-SSCCB
T ss_pred EEEeCCCC--CCcEEeccCCCCEEEcCCC---CcccccccccceeEEEEEecC-----CC------EEEEEEcc-cCCcE
Confidence 45544443 2356663 33579999998 346789999999999988642 23 78899994 69999
Q ss_pred ecCEEcCCCceEEcCCCCEEEE--cCcceEEEEee
Q psy14677 436 VNNKKIDPKRYVELLEKDVIKF--GFSSREYVLLH 468 (483)
Q Consensus 436 VNGeRI~p~r~veLkdGDvIrF--G~STReYVLl~ 468 (483)
|||.+|.++..+.|++||+|.| |.-.+.|+|..
T Consensus 81 vng~~l~k~~~~~L~~GD~l~Ll~g~y~~~v~f~~ 115 (119)
T 1ujx_A 81 VGVQELKPGLSGSLSLGDVLYLVNGLYPLTLRWSG 115 (119)
T ss_dssp SSSSBCCTTCEEEEETTCCCBCBTTBSCCEEEECC
T ss_pred ECCEEecCCCEEEecCCCEEEEecCCeEEEEEecc
Confidence 9999999999999999999985 54455555544
No 39
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=59.21 E-value=23 Score=33.49 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=33.6
Q ss_pred EEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEe
Q psy14677 357 RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYR 406 (483)
Q Consensus 357 rL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r 406 (483)
.|+++.+ .....+.|.....|+||... .|+|.|..+ ..++.|.+.
T Consensus 3 ~l~i~y~-~~~~~~~L~~~~~~tiG~~~-~~~itl~~~---~~~i~l~~~ 47 (238)
T 1wv3_A 3 KLIIKYN-KQLKMLNLRDGKTYTISEDE-RADITLKSL---GEVIHLEQN 47 (238)
T ss_dssp EEEEEET-TEEEEEECCTTCCEEEESCT-TSSEECTTC---CCCEEEEEC
T ss_pred EEEEEEC-CEEEEEecCCCcEEEECCCc-cceEEecCC---CccEEEEEc
Confidence 3566664 35667888656789999998 699999977 667777664
No 40
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=46.63 E-value=21 Score=28.46 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=24.8
Q ss_pred CceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEee
Q psy14677 432 NGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLH 468 (483)
Q Consensus 432 NGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~ 468 (483)
.+.+|||+.+.++ +.|..||+|.|-.....+++..
T Consensus 26 G~V~VNg~~~~~~--~~v~~gd~I~v~~~~~~~~~~~ 60 (92)
T 2k6p_A 26 GAVWLNGSCAKAS--KEVKAGDTISLHYLKGIEEYTI 60 (92)
T ss_dssp TCCEETTEECCTT--CBCCTTCEEEECCSSCCEEEEE
T ss_pred CcEEECCEEcCCC--CCcCCCCEEEEEeCCceEEEEE
Confidence 4578999988553 5789999999965544444443
No 41
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=42.85 E-value=28 Score=30.33 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=23.9
Q ss_pred CceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEe
Q psy14677 432 NGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLL 467 (483)
Q Consensus 432 NGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl 467 (483)
...+|||+.+.++ ..|..||+|.|-.....|++.
T Consensus 34 G~V~VNG~~vk~s--~~V~~GD~I~I~~~~~~~~~~ 67 (133)
T 1dm9_A 34 GKVHYNGQRSKPS--KIVELNATLTLRQGNDERTVI 67 (133)
T ss_dssp TCEEETTEECCTT--CBCCTTCEEEEEETTEEEEEE
T ss_pred CcEEECCEEcCCC--CEeCCCCEEEEEeCCceeeEE
Confidence 4588999998654 578999999886544444443
No 42
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=36.28 E-value=16 Score=29.27 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=21.7
Q ss_pred ceEecCEEcCCCce--EEcCCCCEEEEc
Q psy14677 433 GTFVNNKKIDPKRY--VELLEKDVIKFG 458 (483)
Q Consensus 433 GTFVNGeRI~p~r~--veLkdGDvIrFG 458 (483)
-+.|||+-|++..+ ..|++||.|.|=
T Consensus 36 AVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 47789999998766 689999999873
No 43
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=34.20 E-value=19 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=17.9
Q ss_pred eEecCEEcCCCce--EEcCCCCEEEEc
Q psy14677 434 TFVNNKKIDPKRY--VELLEKDVIKFG 458 (483)
Q Consensus 434 TFVNGeRI~p~r~--veLkdGDvIrFG 458 (483)
..|||+-+++..+ ..|++||.|.|=
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEEE
Confidence 4577777765422 579999999874
No 44
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=33.55 E-value=28 Score=27.41 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=19.2
Q ss_pred CceEecCEEcCCCceEEcCCCCEEEEc
Q psy14677 432 NGTFVNNKKIDPKRYVELLEKDVIKFG 458 (483)
Q Consensus 432 NGTFVNGeRI~p~r~veLkdGDvIrFG 458 (483)
--.+|||+.+... .+|++||.|.|=
T Consensus 59 ~~v~VN~~~v~~~--~~l~~gDeV~i~ 83 (89)
T 3po0_A 59 INVLRNGEAAALG--EATAAGDELALF 83 (89)
T ss_dssp SEEEETTEECCTT--SBCCTTCEEEEE
T ss_pred EEEEECCEECCCC--cccCCCCEEEEE
Confidence 3467888888764 579999999873
No 45
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=33.40 E-value=31 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.9
Q ss_pred ceEecCEEcCCCceEEcCCCCEEEE
Q psy14677 433 GTFVNNKKIDPKRYVELLEKDVIKF 457 (483)
Q Consensus 433 GTFVNGeRI~p~r~veLkdGDvIrF 457 (483)
-..|||+.+... ..|++||.|.|
T Consensus 48 ~v~vNg~~v~~~--~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQKS--DFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEECTT--SEECTTCEEEE
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 356788777764 58999999987
No 46
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=31.61 E-value=13 Score=29.39 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=20.1
Q ss_pred ceEecCEEcCCCce--EEcCCCCEEEEc
Q psy14677 433 GTFVNNKKIDPKRY--VELLEKDVIKFG 458 (483)
Q Consensus 433 GTFVNGeRI~p~r~--veLkdGDvIrFG 458 (483)
-+.|||+-|++..+ ..|++||.|.|=
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 46688888877543 689999999873
No 47
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=30.70 E-value=19 Score=30.36 Aligned_cols=29 Identities=31% Similarity=0.211 Sum_probs=22.7
Q ss_pred eCCCCCceEecCEEcCCCceEEcCCCCEEEEc
Q psy14677 427 DLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458 (483)
Q Consensus 427 DLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG 458 (483)
|| +.+-..|||+.+... ..|++||.|.+=
T Consensus 55 dl-~~~~V~Vng~~v~~d--~~L~dGDRVEIy 83 (97)
T 2hj1_A 55 DL-STNKIGIFSRPIKLT--DVLKEGDRIEIY 83 (97)
T ss_dssp CT-TTSEEEEEECSCCTT--CBCCTTCEEEEC
T ss_pred cc-cccEEEEcCEECCCC--ccCCCCCEEEEE
Confidence 55 456788999988854 579999999874
No 48
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=30.69 E-value=24 Score=29.01 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=18.8
Q ss_pred eEecCEEcCCCce--EEcCCCCEEEEc
Q psy14677 434 TFVNNKKIDPKRY--VELLEKDVIKFG 458 (483)
Q Consensus 434 TFVNGeRI~p~r~--veLkdGDvIrFG 458 (483)
+.|||+-|++..+ ..|++||.|.|=
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEEE
Confidence 5678888876443 579999999873
No 49
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=30.00 E-value=29 Score=27.89 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=19.7
Q ss_pred ceEecCEEcCCCceEEcCCCCEEEEcC
Q psy14677 433 GTFVNNKKIDPKRYVELLEKDVIKFGF 459 (483)
Q Consensus 433 GTFVNGeRI~p~r~veLkdGDvIrFG~ 459 (483)
|-.|||+.++-. ++|.+||+|.|=.
T Consensus 43 ~AkVNG~~v~L~--~~L~~gd~VeIit 67 (78)
T 3hvz_A 43 GAKVDGRIVPID--YKVKTGEIIDVLT 67 (78)
T ss_dssp EEEETTEEECTT--CBCCTTCBEEEEE
T ss_pred EEEECCEEcCCC--cccCCCCEEEEEc
Confidence 456799988875 6799999998753
No 50
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=29.49 E-value=39 Score=25.89 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=18.0
Q ss_pred eEecCEEcCCCceEEcCCCCEEEEc
Q psy14677 434 TFVNNKKIDPKRYVELLEKDVIKFG 458 (483)
Q Consensus 434 TFVNGeRI~p~r~veLkdGDvIrFG 458 (483)
.+|||+.+... ..|++||.|.|=
T Consensus 53 v~vN~~~v~~~--~~l~~gD~V~i~ 75 (81)
T 1fm0_D 53 AAVNQTLVSFD--HPLTDGDEVAFF 75 (81)
T ss_dssp EEETTEECCTT--CBCCTTCEEEEE
T ss_pred EEECCEECCCC--CCCCCCCEEEEe
Confidence 67788877643 579999999873
No 51
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=28.64 E-value=45 Score=33.58 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCceEecCEEcCCCceEEcCCCCEEEEcCc---ceEEEEee
Q psy14677 431 ANGTFVNNKKIDPKRYVELLEKDVIKFGFS---SREYVLLH 468 (483)
Q Consensus 431 TNGTFVNGeRI~p~r~veLkdGDvIrFG~S---TReYVLl~ 468 (483)
.-...|||+.|.....+.|+.||+|+||.. .|.|+-..
T Consensus 80 ~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAV~ 120 (318)
T 3mml_A 80 DTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVR 120 (318)
T ss_dssp CCCCEETTEECCTTSCEEECTTCEEECCCCSSCSEEEEEET
T ss_pred CCcceECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEEEc
Confidence 345669999999999999999999999975 57776543
No 52
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=26.93 E-value=30 Score=27.05 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=21.8
Q ss_pred CceEecCEEcCCCceEEcCCCCEEEEcCcc
Q psy14677 432 NGTFVNNKKIDPKRYVELLEKDVIKFGFSS 461 (483)
Q Consensus 432 NGTFVNGeRI~p~r~veLkdGDvIrFG~ST 461 (483)
.+.+|||+.+... .+.|.+||+|.++...
T Consensus 46 G~V~VNG~~v~~~-~~~v~~gd~I~v~~~~ 74 (79)
T 1p9k_A 46 GQVKVDGAVETRK-RCKIVAGQTVSFAGHS 74 (79)
T ss_dssp HHHEETTBCCCCS-SCCCCSSEEEEETTEE
T ss_pred CEEEECCEEecCC-CCCCCCCCEEEECCEE
Confidence 5678999988432 2468899999998654
No 53
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=26.77 E-value=51 Score=25.30 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=17.8
Q ss_pred eEecCEEcCCCceEEcCCCCEEEEc
Q psy14677 434 TFVNNKKIDPKRYVELLEKDVIKFG 458 (483)
Q Consensus 434 TFVNGeRI~p~r~veLkdGDvIrFG 458 (483)
..|||+-+++.. .|++||.|.|=
T Consensus 42 vavN~~~v~~~~--~L~~gD~V~ii 64 (70)
T 1ryj_A 42 VKKNGQIVIDEE--EIFDGDIIEVI 64 (70)
T ss_dssp EEETTEECCTTS--BCCTTCEEEEE
T ss_pred EEECCEECCCcc--cCCCCCEEEEE
Confidence 457888787654 79999999873
No 54
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=25.99 E-value=22 Score=30.35 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=19.1
Q ss_pred eEecCEEcC--CCceEEcCCCCEEEE
Q psy14677 434 TFVNNKKID--PKRYVELLEKDVIKF 457 (483)
Q Consensus 434 TFVNGeRI~--p~r~veLkdGDvIrF 457 (483)
++|||..+. .+-.++|++||+|.|
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 678998763 344578999999999
No 55
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=25.90 E-value=35 Score=27.68 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=18.1
Q ss_pred eEecCEEcCCCceEEcCCCCEEEEc
Q psy14677 434 TFVNNKKIDPKRYVELLEKDVIKFG 458 (483)
Q Consensus 434 TFVNGeRI~p~r~veLkdGDvIrFG 458 (483)
.+|||+.+... .+|++||.|.|=
T Consensus 70 v~VNg~~v~~~--~~L~dGDeV~i~ 92 (98)
T 1vjk_A 70 IAVNGRYVSWD--EELKDGDVVGVF 92 (98)
T ss_dssp EEETTBCCCTT--CBCCTTCEEEEE
T ss_pred EEECCEECCCC--CCCCCCCEEEEE
Confidence 67788877653 689999999884
No 56
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=23.81 E-value=45 Score=26.50 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=17.7
Q ss_pred eEecCEEcCC--CceEEcCCCCEEEEc
Q psy14677 434 TFVNNKKIDP--KRYVELLEKDVIKFG 458 (483)
Q Consensus 434 TFVNGeRI~p--~r~veLkdGDvIrFG 458 (483)
.+|||+.+.. +...+|++||.|.|=
T Consensus 61 v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 61 IYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 5678877752 223689999999874
No 57
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=23.39 E-value=17 Score=27.46 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=17.9
Q ss_pred eEecCEEcCCCce--EEcCCCCEEEE
Q psy14677 434 TFVNNKKIDPKRY--VELLEKDVIKF 457 (483)
Q Consensus 434 TFVNGeRI~p~r~--veLkdGDvIrF 457 (483)
..|||+-+++..+ ..|++||.|.|
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEE
Confidence 5678888875322 57999999977
No 58
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=22.04 E-value=44 Score=25.70 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=15.6
Q ss_pred eEecCEEcCCCceEEcCCCCEEEEc
Q psy14677 434 TFVNNKKIDPKRYVELLEKDVIKFG 458 (483)
Q Consensus 434 TFVNGeRI~p~r~veLkdGDvIrFG 458 (483)
..|||+-|.. ....|++||.|.|=
T Consensus 45 vavN~~~v~~-~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 45 IALNDHLIDN-LNTPLKDGDVISLL 68 (74)
T ss_dssp EEESSSEECC-TTCCCCTTCEEEEE
T ss_pred EEECCEEcCC-CCcCCCCCCEEEEE
Confidence 3455555432 23679999999874
No 59
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=21.21 E-value=21 Score=30.19 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=37.8
Q ss_pred cCccccceeccCCCcccccccchhHHHHHHHHhhCCcceee-EeeecCc-cCccC--Ccc------hhhhhhhhhhhHHH
Q psy14677 39 NHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCA-FLFSGNT-RKHIP--SMN------LDIRKKSRRKRVIA 108 (483)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~--~~~------~~~~~~~~~~~~~~ 108 (483)
.|||..-++|+|.|-+ .+.+..+..+.+|+-+-=-+.|+. |.-.|-. ..-+. .|. +-|.+-.-||+++.
T Consensus 7 ~~~~~~~~~~~~~~~~-~~~~~~~~~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~ 85 (101)
T 2lmr_A 7 HHHHSSGLVPRGSHMI-SGLRTLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQ 85 (101)
T ss_dssp --------------CC-CCCCCSSCCHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHH
T ss_pred cccccCcccCCCCCCC-CCCCCCcccHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHH
Confidence 4677888999998865 355555667777766655677775 4333322 23333 333 34566667889999
Q ss_pred HHHhhhhh
Q psy14677 109 LIQNLTQA 116 (483)
Q Consensus 109 ~~~~~~~~ 116 (483)
.|+.|...
T Consensus 86 aI~~L~~~ 93 (101)
T 2lmr_A 86 AARSLPKV 93 (101)
T ss_dssp HHHTSSSC
T ss_pred HHHHHHhc
Confidence 99887653
No 60
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=20.85 E-value=26 Score=30.01 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=18.3
Q ss_pred eEecCEEcC--CCceEEcCCCCEEEE
Q psy14677 434 TFVNNKKID--PKRYVELLEKDVIKF 457 (483)
Q Consensus 434 TFVNGeRI~--p~r~veLkdGDvIrF 457 (483)
.||||+-|. .+--++|++||.|.|
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEE
Confidence 678988653 344478999999998
No 61
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=20.38 E-value=57 Score=26.50 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=17.8
Q ss_pred eEecCEEcC--CCceEEcCCCCEEEE
Q psy14677 434 TFVNNKKID--PKRYVELLEKDVIKF 457 (483)
Q Consensus 434 TFVNGeRI~--p~r~veLkdGDvIrF 457 (483)
.+|||+-+. .+.-.+|++||+|.|
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEE
Confidence 678888654 223468999999988
Done!