RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14677
(483 letters)
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
splicing, transcription; NMR {Mus musculus}
Length = 140
Score = 172 bits (436), Expect = 5e-52
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 323 FGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGR 382
G + N+ + + + P A KP L KGD + L I + +L GR
Sbjct: 3 LGSPNSMAAAVNSGSSLP-LFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGR 61
Query: 383 DRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKID 442
+ + D +DH SCS+ HAAL Y R+++IDL S +GTF+ + +++
Sbjct: 62 NPDLCDFTIDHQSCSRVHAALVYH-----------KHLKRVFLIDLNSTHGTFLGHIRLE 110
Query: 443 PKRYVELLEKDVIKFGFSSREYVLLHE 469
P + ++ + FG S+R Y L +
Sbjct: 111 PHKPQQIPIDSTVSFGASTRAYTLREK 137
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Length = 205
Score = 159 bits (403), Expect = 1e-46
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 42/209 (20%)
Query: 294 ASDEYEWGRKDANNEDNKNNAQQPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPK 353
+ + ++ ++D K +Q PDF SG L ++N G+ +K+ EP DA P
Sbjct: 4 HRRKRPYNTRNYGHDDKKFKSQYIDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPD 63
Query: 354 RRWRLYPFKG-----------------DTQLPVLHIHRQSAFLMGRDR------------ 384
+ + ++ +S +L+GR+
Sbjct: 64 NYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRT 123
Query: 385 --KVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKID 442
VADI + + SKQH +Q+R ++ Y++DL+S+NGT +NN I
Sbjct: 124 EIVVADIGIPEETSSKQHCVIQFRNVR---------GILKCYVMDLDSSNGTCLNNVVIP 174
Query: 443 PKRYVELLEKDVIKFGFSSR--EYVLLHE 469
RY+EL DV+ +Y L+
Sbjct: 175 GARYIELRSGDVLTLSEFEEDNDYELIFM 203
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 141 bits (355), Expect = 4e-40
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 42/165 (25%)
Query: 338 GVVIKYSEPPDARKPKRRWRLYPF-----------------KGDTQLPVLHIHRQSAFLM 380
G + K+ EP DA P + K ++ +S +L+
Sbjct: 1 GAMGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLV 60
Query: 381 GRDR--------------KVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYII 426
GR+ VADI + + SKQH +Q+R ++ Y++
Sbjct: 61 GRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR---------GILKCYVM 111
Query: 427 DLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSR--EYVLLHE 469
DL+S+NGT +NN I RY+EL DV+ +Y L+
Sbjct: 112 DLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDNDYELIFM 156
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 73.7 bits (181), Expect = 4e-16
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 346 PPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQY 405
+ RL KG + L S +GR + +I + S +H +
Sbjct: 3 SGSSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRI-- 60
Query: 406 RLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYV 465
+ G I DL S+NGT +N+ +DP+ V L + DVIK G + V
Sbjct: 61 -----ESDSG------NWVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILV 109
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA
domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO;
1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A*
3uot_A* 3un0_B
Length = 132
Score = 70.7 bits (173), Expect = 6e-15
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 14/125 (11%)
Query: 347 PDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYR 406
P + +L F G ++GR + + PS SKQHA ++
Sbjct: 16 PRGSHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPD-CSVALPFPSISKQHAVIEIS 74
Query: 407 LTDYTREDGSKGKRIRLYIIDLESANGTFVNN--KKIDPKRYVELLEKDVIKFGFSSREY 464
+ + D S NGT + + + P L ++++I F +Y
Sbjct: 75 AWNK-----------APILQDCGSLNGTQIVKPPRVLPPGVSHRLRDQELILFADFPCQY 123
Query: 465 VLLHE 469
L
Sbjct: 124 HRLDV 128
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 67.0 bits (164), Expect = 6e-14
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 355 RWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTRED 414
R+ L G H+ +++G D +VADI + S S+QHA + D
Sbjct: 4 RFLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIII------GND 57
Query: 415 GSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
+ I DL S NG V +KI+ L V+ G
Sbjct: 58 N------SVLIEDLGSKNGVIVEGRKIE--HQSTLSANQVVALG 93
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 67.3 bits (164), Expect = 1e-13
Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 10/138 (7%)
Query: 344 SEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAAL 403
S P + L + + I ++ +GR R D+ + P S HA
Sbjct: 8 SNKPSSE-YTCLGHLVNLIPGKEQK-VEITNRNVTTIGRSRS-CDVILSEPDISTFHAEF 64
Query: 404 QYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSRE 463
D + L + +S NGTF+N ++ K+ L D I FG S
Sbjct: 65 HLLQMDVDNFQRN------LINVIDKSRNGTFINGNRL-VKKDYILKNGDRIVFGKSCSF 117
Query: 464 YVLLHEHSKDSDYDDDVQ 481
S +DD +
Sbjct: 118 LFKYASSSSTDIENDDEK 135
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase;
NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 139
Score = 65.7 bits (160), Expect = 4e-13
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 20/123 (16%)
Query: 360 PFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGK 419
P G + +GR +D+ + S +HA + +
Sbjct: 16 PAIGLQHAVNSTSSSKLPVKLGRVSP-SDLALKDSEVSGKHAQITWN-----------ST 63
Query: 420 RIRLYIIDLESANGTFVNNKKID--------PKRYVELLEKDVIKFGFSSREYVLLHEHS 471
+ + ++D+ S NGT VN+ I VEL D+I G +++ YV + +
Sbjct: 64 KFKWELVDMGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQN 123
Query: 472 KDS 474
+
Sbjct: 124 EFQ 126
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 62.4 bits (151), Expect = 6e-12
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 20/140 (14%)
Query: 344 SEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDR--------KVADIPVDHPS 395
+ P+ P RL+ + + GRD+ + + +
Sbjct: 19 DQEPEEPTPAPWARLWALQDGFANLEC---VNDNYWFGRDKSCEYCFDEPLLKRTDKYRT 75
Query: 396 CSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVI 455
SK+H + + YI D S NGTFVN + + + L I
Sbjct: 76 YSKKHFRIFR--------EVGPKNSYIAYIEDH-SGNGTFVNTELVGKGKRRPLNNNSEI 126
Query: 456 KFGFSSREYVLLHEHSKDSD 475
S + + + + D
Sbjct: 127 ALSLSRNKVFVFFDLTVDDQ 146
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring
finger protein 8, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.26.1.2
Length = 145
Score = 61.5 bits (149), Expect = 1e-11
Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 26/141 (18%)
Query: 344 SEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSC----SKQ 399
S R R W L + L + +GR + C S+
Sbjct: 6 SGVTGDRAGGRSWCLR--RVGMSAGWLLLEDGCEVTVGRGFG-VTYQLVSKICPLMISRN 62
Query: 400 HAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGF 459
H L+ +G + I+D +S NG ++N +++P R + + D I+ G
Sbjct: 63 HCVLKQN------PEG------QWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 110
Query: 460 SSR-------EYVLLHEHSKD 473
EY + E +
Sbjct: 111 PLENKENAEYEYEVTEEDWET 131
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase,
signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP:
b.26.1.2
Length = 138
Score = 60.7 bits (147), Expect = 2e-11
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 19/114 (16%)
Query: 349 ARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSC----SKQHAALQ 404
R W L + L + +GR + C S+ H L+
Sbjct: 3 HMAGGRSWCL--RRVGMSAGWLLLEDGCEVTVGRGFG-VTYQLVSKICPLMISRNHCVLK 59
Query: 405 YRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
+G + I+D +S NG ++N +++P R + + D I+ G
Sbjct: 60 QN------PEG------QWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG 101
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 59.1 bits (143), Expect = 5e-11
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 375 QSAFLMGRDRKVADIPV-DHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANG 433
+ + GR+ D + + S +H + EDG+ +++ S NG
Sbjct: 35 KKVWTFGRNPA-CDYHLGNISRLSNKHFQI------LLGEDGN-------LLLNDISTNG 80
Query: 434 TFVNNKKIDPKRYVELLEKDVIKFGFSSREYVL 466
T++N +K++ L + D I G +L
Sbjct: 81 TWLNGQKVEKNSNQLLSQGDEITVGVGVESDIL 113
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 59.0 bits (143), Expect = 6e-11
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 16/85 (18%)
Query: 374 RQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANG 433
S L GR + DI + P SKQH + + + + S N
Sbjct: 31 SLSTCLFGRGIE-CDIRIQLPVVSKQHCKI-------EIHEQ------EAILHNFSSTNP 76
Query: 434 TFVNNKKIDPKRYVELLEKDVIKFG 458
T VN ID V L DVI
Sbjct: 77 TQVNGSVID--EPVRLKHGDVITII 99
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 58.6 bits (142), Expect = 6e-11
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 15/108 (13%)
Query: 357 RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPV-DHPSCSKQHAALQYRLTDYTREDG 415
RL + P + + ++ + +GR R D+ + S H +
Sbjct: 6 RLLRLGAEEGEPHVLLRKRE-WTIGRRRG-CDLSFPSNKLVSGDHCRIVVDEKSGQ---- 59
Query: 416 SKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSRE 463
+ + D S +GT +N K+ K+ L DVI + E
Sbjct: 60 -------VTLEDT-STSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNE 99
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 57.7 bits (140), Expect = 1e-10
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 374 RQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANG 433
R+ + ++GR + A + S++H + + + DL S NG
Sbjct: 21 REGSNIIGRGQD-AQFRLPDTGVSRRHLEI-------RWDGQ------VALLADLNSTNG 66
Query: 434 TFVNNKKIDPKRYVELLEKDVIKFG 458
T VNN + +L + DVI+ G
Sbjct: 67 TTVNNAPVQE---WQLADGDVIRLG 88
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 58.8 bits (142), Expect = 2e-10
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 18/115 (15%)
Query: 344 SEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAAL 403
S + D + S ++GR + A + S++H +
Sbjct: 54 SGYGQGGYGSAGTSVTLQLDDGSGRTYQLREGS-NIIGRGQD-AQFRLPDTGVSRRHLEI 111
Query: 404 QYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
+ + DL S NGT VNN + +L + DVI+ G
Sbjct: 112 -------RWDGQ------VALLADLNSTNGTTVNNAPVQE---WQLADGDVIRLG 150
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein
complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium
smegmatis}
Length = 115
Score = 57.0 bits (138), Expect = 2e-10
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 374 RQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANG 433
Q GR +DI +D + S++HA E G ++D+ S NG
Sbjct: 29 DQPTTSAGRHPD-SDIFLDDVTVSRRHAEF-------RLEGG------EFQVVDVGSLNG 74
Query: 434 TFVNNKKIDPKRYVELLEKDVIKFG 458
T+VN + +D L D ++ G
Sbjct: 75 TYVNREPVDS---AVLANGDEVQIG 96
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 58.5 bits (141), Expect = 2e-10
Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 37/166 (22%)
Query: 312 NNAQQPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLH 371
N QP Q+ T+ T + + R+ G + L
Sbjct: 2 ENITQPTQQS--------TQATQRFLIE----KFSQEQIGENIVCRVICTTGQIPIRDLS 49
Query: 372 IHR----------QSAFLMGRDRKVADIPV-DHPSCSKQHAALQYRLTDYTREDGSKGKR 420
+ + GR+ D + + S +H + EDG+
Sbjct: 50 ADISQVLKEKRSIKKVWTFGRNPA-CDYHLGNISRLSNKHFQI------LLGEDGN---- 98
Query: 421 IRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVL 466
+++ S NGT++N +K++ L + D I G +L
Sbjct: 99 ---LLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDIL 141
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain,
BRCT domain, phosphoprotein binding, phosp binding, DNA
repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe}
PDB: 3hue_A* 3i0m_A* 3i0n_A*
Length = 325
Score = 59.5 bits (143), Expect = 7e-10
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 374 RQSAFLMGRDRK--VADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESA 431
+++GR+ + I V S SK+HA +D G + DL++
Sbjct: 19 FPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSE--KDYFTGGPCEFEVKDLDTK 76
Query: 432 NGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEH 470
GT VN K + + I+ G
Sbjct: 77 FGTKVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRS 115
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 55.6 bits (134), Expect = 1e-09
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 346 PPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQY 405
P L +G + + + GR + +DI +D + S++HA
Sbjct: 37 TGAENLPAGSALLVVKRGPNAGARFLLDQPT-TTAGRHPE-SDIFLDDVTVSRRHAEF-- 92
Query: 406 RLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
+G ++D+ S NGT+VN + + + D I+ G
Sbjct: 93 -----RINEG------EFEVVDVGSLNGTYVNREPRNA---QVMQTGDEIQIG 131
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 56.1 bits (135), Expect = 1e-09
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 346 PPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQY 405
P L +G + + GR +DI +D + S++HA
Sbjct: 46 SGVEGLPPGSALLVVKRGPNAGSRFLLDQAI-TSAGRHPD-SDIFLDDVTVSRRHAEF-- 101
Query: 406 RLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
E+ ++D+ S NGT+VN + +D L D ++ G
Sbjct: 102 -----RLENN------EFNVVDVGSLNGTYVNREPVDS---AVLANGDEVQIG 140
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 52.2 bits (125), Expect = 1e-08
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 374 RQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIR-LYIIDLESAN 432
++ + +GR + ADI + S+ HA L + + +D RI S N
Sbjct: 28 TETFYTIGRSPR-ADIRIKSQFVSRIHAVLVRK----SSDDVQAAYRIIDGDEDGQSSVN 82
Query: 433 GTFVNNKKIDPKRYVELLEKDVIKFG 458
G +N KK+ + D I G
Sbjct: 83 GLMINGKKVQEH---IIQTGDEIVMG 105
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel
beta-sheets, transferase; NMR {Saccharomyces cerevisiae}
SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A*
1k2m_A* 1k2n_A*
Length = 158
Score = 49.0 bits (116), Expect = 4e-07
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 358 LYPFKGDTQLPVLHIHR-QSAFLMGRDRKVADIPVDHPSCSKQHAALQYR--LTDYTRED 414
L P L I + + F +GR + ++ S+ H + + + +
Sbjct: 8 LKPLPDSIIQESLEIQQGVNPFFIGRSEDC-NCKIEDNRLSRVHCFIFKKRHAVGKSMYE 66
Query: 415 GSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSRE 463
++ N +++NN ++ L + D IK +
Sbjct: 67 SPAQGLDDIWYCHT-GTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNN 114
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2
Length = 182
Score = 46.4 bits (109), Expect = 4e-06
Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 5/137 (3%)
Query: 330 TEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHR-QSAFLMGRDRKVAD 388
T + + + + + R L P L I + + F +GR +
Sbjct: 4 TREQKLLHSNNTENVKSSKKKGNGRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSED-CN 62
Query: 389 IPVDHPSCSKQHAALQYR--LTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRY 446
++ S+ H + + + + ++ N +++NN ++
Sbjct: 63 CKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQGTK 121
Query: 447 VELLEKDVIKFGFSSRE 463
L + D IK +
Sbjct: 122 FLLQDGDEIKIIWDKNN 138
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 45.8 bits (109), Expect = 2e-05
Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 24/138 (17%)
Query: 357 RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSC---------SKQHAALQYRL 407
RL+ + L + GRD+ + D P SK+H +
Sbjct: 12 RLWALQD--GFANLEC-VNDNYWFGRDKSC-EYCFDEPLLKRTDKYRTYSKKHFRI---- 63
Query: 408 TDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLL 467
RE G K I YI D S NGTFVN + + + L I S + +
Sbjct: 64 ---FREVGPKNSYI-AYIEDH-SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVF 118
Query: 468 HEHSKD--SDYDDDVQDD 483
+ + D S Y ++D+
Sbjct: 119 FDLTVDDQSVYPKALRDE 136
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 44.5 bits (104), Expect = 5e-05
Identities = 19/176 (10%), Positives = 37/176 (21%)
Query: 144 DSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSS 203
++ KEE + + R +ER + S
Sbjct: 262 RRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSE 321
Query: 204 DKHRHSSKTEPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQ 263
P E + +R + + R D R ++ E
Sbjct: 322 AGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRG 381
Query: 264 DRRSNQSHDRPQSSSNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKNNAQQPKQ 319
+R S + D + G +N + +
Sbjct: 382 ERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE 437
Score = 44.5 bits (104), Expect = 6e-05
Identities = 23/160 (14%), Positives = 50/160 (31%)
Query: 153 KEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKT 212
+E E +K R R R + R + R + + ++ ++ S + R ++
Sbjct: 242 RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARR 301
Query: 213 EPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHD 272
E +E R E + + + D + ++ ++RR + +
Sbjct: 302 ERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSE 361
Query: 273 RPQSSSNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKN 312
R + RDR + + E N
Sbjct: 362 RERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDN 401
Score = 42.5 bits (99), Expect = 2e-04
Identities = 15/168 (8%), Positives = 42/168 (25%)
Query: 153 KEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKT 212
KE + R ++ E S + +R + + + +
Sbjct: 250 KERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEEL 309
Query: 213 EPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHD 272
+ ++ D + + R+ ++ +R + D
Sbjct: 310 RGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRD 369
Query: 273 RPQSSSNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKNNAQQPKQK 320
R + H R + D + G+ + ++ +
Sbjct: 370 RDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMES 417
Score = 40.2 bits (93), Expect = 0.001
Identities = 24/204 (11%), Positives = 51/204 (25%)
Query: 87 RKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQALRVNDSE 146
K I + + + R + L +
Sbjct: 166 GKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGP 225
Query: 147 AVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKH 206
+ + E + R + R + + R ++ + R + S DK
Sbjct: 226 SPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKD 285
Query: 207 RHSSKTEPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRR 266
R + RE R + +E + D D+ + +
Sbjct: 286 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE 345
Query: 267 SNQSHDRPQSSSNSHHRDRGPKKP 290
+ DR + S+ R+R +
Sbjct: 346 KGRDRDRERRRSHRSERERRRDRD 369
Score = 31.7 bits (71), Expect = 0.48
Identities = 22/173 (12%), Positives = 46/173 (26%)
Query: 150 NKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHS 209
E + R + ++ P
Sbjct: 175 LVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRD 234
Query: 210 SKTEPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQ 269
E RE R R + + R R +R+ D R+ + ++ + RRS++
Sbjct: 235 RDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSR 294
Query: 270 SHDRPQSSSNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKNNAQQPKQKPD 322
S +R + RG + S+ + D + + ++
Sbjct: 295 SRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKG 347
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 40.7 bits (95), Expect = 1e-04
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 368 PVLHIHRQSAFLMGRDRKV-ADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYII 426
P L+ + S +G ++ I + P H L T DG + +
Sbjct: 28 PKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDL-------TNMDG------VVTVT 74
Query: 427 DLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
T+V+ ++I L ++FG
Sbjct: 75 PRSMDAETYVDGQRISET--TMLQSGMRLQFG 104
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain,
beta-sandwich, antiparallel beta-sheets, phosphopeptide
binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Length = 119
Score = 35.8 bits (82), Expect = 0.007
Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 16/124 (12%)
Query: 344 SEPPDARKPKRRWRLYPFKGDTQLPVLHI-HRQSAFLMGRDRKVADIPVDHPSCSKQHAA 402
S + R RL+ P + + A ++GR V CS+
Sbjct: 3 SGSSGMSQLGSRGRLWLQSPTGGPPPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVE 59
Query: 403 LQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSR 462
L T + N + V +++ P L DV+
Sbjct: 60 LIADPESRT------------VAVKQLGVNPSTVGVQELKPGLSGSLSLGDVLYLVNGLY 107
Query: 463 EYVL 466
L
Sbjct: 108 PLTL 111
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 34.5 bits (79), Expect = 0.016
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 369 VLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDL 428
+L + + L+G DI + +H + +G ++
Sbjct: 41 LLVYYLKEHTLIGSANS-QDIQLCGMGILPEHCIIDI------TSEG-------QVMLTP 86
Query: 429 ESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
+ TFVN + ++L D I +G
Sbjct: 87 QKNTRTFVNGSSVSSP--IQLHHGDRILWG 114
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 33.6 bits (76), Expect = 0.041
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 369 VLHIHRQSAFLMGRDR--KVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYII 426
+L+ + +G+ + DI + ++H E + G+ I +
Sbjct: 24 LLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCIF-------RSERSNSGEVI--VTL 74
Query: 427 DLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
+ + T+VN K++ V+L + I G
Sbjct: 75 EPCERSETYVNGKRVSQP--VQLRSGNRIIMG 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.043
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 39/111 (35%)
Query: 380 MGRD--------RKV---ADIPVDHPSCSKQHAALQY--RLTDYTRED---------GSK 417
MG D + V AD H Y + D + G K
Sbjct: 1631 MGMDLYKTSKAAQDVWNRAD----------NHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 418 GKRIR-LYI-IDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVL 466
GKRIR Y + E+ + +KI E+ E + F S + +L
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFK----EINEH-STSYTFRSEKGLL 1726
Score = 31.6 bits (71), Expect = 0.73
Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 63/159 (39%)
Query: 8 AAALSTV--------LHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPF---------- 49
A A++ + + F + RC + P
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLF-----FIGVRC--------YEAYPNTSLPPSILED 326
Query: 50 ------NLPS--LFLDGCNLC--IELIDYILSSLTPN---YCAFLFSGNTRKHI-----P 91
+PS L + + ++ S L + L N K++ P
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LV--NGAKNLVVSGPP 383
Query: 92 S----MNLDIRKKSRRKRVIALIQNLTQAQIPNMKRNLK 126
+NL +RK L Q++IP +R LK
Sbjct: 384 QSLYGLNLTLRKAKAP-------SGLDQSRIPFSERKLK 415
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Length = 284
Score = 34.3 bits (79), Expect = 0.067
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 130 PKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHH 176
P K + + + E V+ + + + H H HHH
Sbjct: 66 PVSKLPGAKQVTIAQLEDVK-PLLMKSIHGDDDDHDHAEKSDEDHHH 111
Score = 29.3 bits (66), Expect = 2.4
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 125 LKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHH 176
K P K + L +++ ++ + + HHH + H
Sbjct: 66 PVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMH 117
Score = 28.1 bits (63), Expect = 5.8
Identities = 7/50 (14%), Positives = 14/50 (28%)
Query: 126 KRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHH 175
K S + V ++ D + + K ++ H H
Sbjct: 65 KPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDF 114
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum
cofactor, structural genomics, center for structural
genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm
1728}
Length = 136
Score = 33.0 bits (75), Expect = 0.070
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 131 KKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHH 170
K K V + ++A++ ++ + + P H H HHH
Sbjct: 97 KNKMDVYIVPEMPVADALKLILEGKVSPATAPTHDHGHHH 136
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 34.1 bits (77), Expect = 0.10
Identities = 25/188 (13%), Positives = 54/188 (28%), Gaps = 7/188 (3%)
Query: 99 KKSRRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKH--QVVQALRVNDSEAVENKIKEEP 156
++ R+ + Q ++ M + L+ + Q ++ E V +E
Sbjct: 370 EQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVE 429
Query: 157 TEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSE 216
++ + R R + L Q + + + +E
Sbjct: 430 LKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGG 489
Query: 217 RETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHDRPQS 276
+ R D + R +RN R H+ + + S D + D+
Sbjct: 490 GDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLAR-----SCDETKETAMDKIHR 544
Query: 277 SSNSHHRD 284
+ RD
Sbjct: 545 ENVRQGRD 552
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 33.7 bits (76), Expect = 0.15
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 166 HHHHHRHRHHHKQERTELSDRHNL-QENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQ 224
HHHHH HHH +R +L ++ + ++ S H+S+ + ++ + +
Sbjct: 2 HHHHH---HHHHHQRGPGFKFVDLNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQI 58
Query: 225 SHD--DEETNERRHHDRNNRTHDNRHDERNSRQQNNER 260
D + + ++ + + D++ +E N E
Sbjct: 59 GEDFMEVDYEDKDNPVDSRNETDHKTNENGETDDNIET 96
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich,
P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Length = 143
Score = 32.1 bits (72), Expect = 0.15
Identities = 21/126 (16%), Positives = 32/126 (25%), Gaps = 16/126 (12%)
Query: 357 RLYPFKGDTQLPVLHI-HRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDG 415
RL+ P + + A ++GR V CS+ L T
Sbjct: 9 RLWLQSPTGGPPPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPESRT---- 61
Query: 416 SKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHSKDSD 475
+ N + V ++ P L DV+ L E S
Sbjct: 62 --------VAVKQLGVNPSTVGVHELKPGLSGSLSLGDVLYLVNGLYPLTLRWEELSTSG 113
Query: 476 YDDDVQ 481
D
Sbjct: 114 SQPDAP 119
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 33.3 bits (76), Expect = 0.18
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 162 PRHHHHHHHRHRHHHKQ 178
HHHHHHH H H
Sbjct: 2 GHHHHHHHHHHHHSSGH 18
Score = 32.1 bits (73), Expect = 0.36
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 165 HHHHHHRHRHHHKQERTELSDRHNLQENQRP 195
HHHHHH H HHH + D+H L+ Q
Sbjct: 3 HHHHHHHHHHHHSSGHIDDDDKHMLEMIQSH 33
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic
groups, and carriers, transferase; HET: PT1; 1.90A
{Coxiella burnetii}
Length = 314
Score = 32.9 bits (76), Expect = 0.22
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 134 HQV---VQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHH 176
H V +A+++ + + + EEE HHHH H HHH
Sbjct: 274 HDVKATREAIKI--ATYTRS---VDTIEEENLYFQGHHHHHHHHHH 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.23
Identities = 27/146 (18%), Positives = 42/146 (28%), Gaps = 50/146 (34%)
Query: 40 HHHTQQVIPFNLPSLFLD-GCN---------LCIELIDYIL------------------- 70
+ + ++ + + C L E ID+I+
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 71 ----------SSLTPNYCAFLFSG-NTRKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIP 119
L NY FL S T + PSM + + R + + N Q
Sbjct: 75 QEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQ---V 125
Query: 120 NMKRNLKRKSPKKK-HQVVQALRVND 144
K N+ R P K Q + LR
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAK 151
Score = 31.4 bits (70), Expect = 0.94
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 5/19 (26%)
Query: 164 HHHHHH-----HRHRHHHK 177
HHHHHH H++ +K
Sbjct: 1 HHHHHHMDFETGEHQYQYK 19
Score = 29.1 bits (64), Expect = 4.5
Identities = 47/339 (13%), Positives = 84/339 (24%), Gaps = 81/339 (23%)
Query: 165 HHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSD---KHRHSSKTEPSERETKR 221
HHHHHH E + ++ E + K + +
Sbjct: 1 HHHHHHM--------DFETGEHQYQYKDILSVFEDAFVDNFDCKD-----VQDMPKSILS 47
Query: 222 NRQSHDDEETNERRHHDRNNRTHDNRHDERNSR-QQNNERGSQDRRSNQSHDRPQSSSNS 280
+ D + R ++ Q+ E + + S
Sbjct: 48 KEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-------NYKFLMSPI 98
Query: 281 HHRDRGPKKPFCDASDEYEWGRKDANNEDN----KNNAQQPKQKPDFGLSGKLTEDTNTY 336
R P + Y R N DN K N + +P L L E
Sbjct: 99 KTEQRQPSMM----TRMYIEQRDRLYN-DNQVFAKYNV--SRLQPYLKLRQALLELRPA- 150
Query: 337 NGVVI-------KYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADI 389
V+I K D + FK + ++ + +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK------IFWLN------LKNCNSPETV 198
Query: 390 PVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVE- 448
+ L Y++ I+L I +++ + + K Y
Sbjct: 199 L-------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-----KPYENC 246
Query: 449 LL------EKDVIK-FGFSSREYVLLHEHSKDSDYDDDV 480
LL F S + +LL ++ D +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCK--ILL--TTRFKQVTDFL 281
Score = 28.3 bits (62), Expect = 7.3
Identities = 51/364 (14%), Positives = 98/364 (26%), Gaps = 98/364 (26%)
Query: 1 MLTVEADAAALSTVLHQTVLKCSFSALIRYYQY-RCLV--RNHHHTQQVIPFNLPS--L- 54
T +D ++ + L ++ L++ Y CL+ N + + FNL L
Sbjct: 212 NWTSRSDHSS-NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 55 ---------FLDGCNLCIELIDYILSSLTPNYCAFLFSGNTRKHIPSMNLDIRKKSRRKR 105
FL +D+ +LTP+ L +L + R
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPR 328
Query: 106 VIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQA---------LR------------VND 144
+++I + N K + K ++++ R +
Sbjct: 329 RLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 145 SEAV-----ENKIKEEPTE-----------EEKP---RHHHHHHHRHRHHHKQERTEL-- 183
+ + IK + E++P + + L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 184 --SDRHNLQENQRPRHEKPHSSDK----H--RHSSKTEPSERETKRNRQSHDDEETNERR 235
D +N+ + P D+ H H E ER T D
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------- 500
Query: 236 HHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHDRPQSSSNSHHRDRGPKKPFCDAS 295
R + + R + + + S N+ + + K CD
Sbjct: 501 ------RFLEQKI----------------RHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 296 DEYE 299
+YE
Sbjct: 539 PKYE 542
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 32.4 bits (73), Expect = 0.26
Identities = 8/128 (6%), Positives = 29/128 (22%), Gaps = 12/128 (9%)
Query: 198 EKPHSSDKHRHSSKTEPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRH---DERNSR 254
E +SS + + + + + + + + ++ R
Sbjct: 26 ELENSSPELKAELRPLQFKSIREIDVAG---GKKALAIFVPVPSLAGFHKVQTKLTRELE 82
Query: 255 QQNNERGSQDRRSNQSHDRPQSSSNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKNNA 314
++ +R + S + K+P + +
Sbjct: 83 KKFQDRHVIFLAERRIL-----PKPSRTSRQVQKRPRSRTLTAVH-DKILEDLVFPTEIV 136
Query: 315 QQPKQKPD 322
+ +
Sbjct: 137 GKRVRYLV 144
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 32.4 bits (74), Expect = 0.28
Identities = 6/47 (12%), Positives = 14/47 (29%)
Query: 142 VNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHN 188
++ ++ + E+ H H H H E + +
Sbjct: 80 IDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGA 126
Score = 31.6 bits (72), Expect = 0.53
Identities = 10/69 (14%), Positives = 23/69 (33%)
Query: 119 PNMKRNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQ 178
P +++ + K Q + + E ++ EE ++ H H +
Sbjct: 65 PWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAK 124
Query: 179 ERTELSDRH 187
++D H
Sbjct: 125 GALMVADPH 133
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 32.3 bits (73), Expect = 0.32
Identities = 20/148 (13%), Positives = 39/148 (26%), Gaps = 5/148 (3%)
Query: 166 HHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQS 225
HHHHH + S R ++ + SS S+ PS++ R +
Sbjct: 5 HHHHHHSSGLVPRGSHMASKRC-----RQCSGDSASSSTSSLSPSELPPSKKAAGGQRVT 59
Query: 226 HDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHDRPQSSSNSHHRDR 285
+ E T ++ + R S + +
Sbjct: 60 AEVEVAPITTDATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAAL 119
Query: 286 GPKKPFCDASDEYEWGRKDANNEDNKNN 313
KK + + + + D +
Sbjct: 120 NAKKSEKEIWSDVVPFVRRTTDSDFDPS 147
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 32.0 bits (73), Expect = 0.40
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 165 HHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKP 200
HHHHHH HHH L + +++ R +
Sbjct: 3 HHHHHH---HHHHSSGENLYFQGHMKAKNRKTRKFE 35
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 32.3 bits (73), Expect = 0.42
Identities = 20/192 (10%), Positives = 43/192 (22%), Gaps = 8/192 (4%)
Query: 99 KKSRRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTE 158
++ IA + V R + +++ + P
Sbjct: 292 ILKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIA 351
Query: 159 EEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERE 218
+ +E + + + R SS +EPS
Sbjct: 352 SVGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTR 411
Query: 219 TKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNN--------ERGSQDRRSNQS 270
+ ++ N+ + R+S N E + D
Sbjct: 412 ATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNYESALKGIEGLNFDGDERVQ 471
Query: 271 HDRPQSSSNSHH 282
+ + HH
Sbjct: 472 YAAALEHHHHHH 483
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 31.6 bits (72), Expect = 0.44
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 135 QVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHH 169
+ + + ++ +EA+ +I ++ T+ E HHHHHH
Sbjct: 291 RNLASHQL--AEAICQQITQQVTKGEGGSHHHHHH 323
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
protein, structural genomics, PSI-2, protein STRU
initiative; 2.70A {Porphyromonas gingivalis}
Length = 506
Score = 31.7 bits (72), Expect = 0.50
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 96 DIRKKSRRKRVIALIQN---------LTQAQIPNMKRNLKRKSPKKKHQVVQALRVNDSE 146
D+R K+ R+R +I L Q + +K ++P + +
Sbjct: 430 DLRGKNPRERAHEIIDKCVHPDYRPLLRQYL----ELGVKGQTP---QNLDCCFAFHQEL 482
Query: 147 AVENKIK-EEPTEEEKPRHHHHHH 169
A ++ + K HHHHHH
Sbjct: 483 AKSGDMRNVRWEDYMKLEHHHHHH 506
>3bn4_A Carbon dioxide-concentrating mechanism protein CC 1; hexamer,
structural protein; 2.00A {Synechocystis SP}
Length = 122
Score = 30.2 bits (68), Expect = 0.64
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 118 IPNMKRNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHH 170
I NL+ P + + V+ R E V I E HHHHHH
Sbjct: 78 IARPHENLEYVLPIRYTEAVEQFR----EIVNPSIIRRAAALE----HHHHHH 122
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma
membrane; HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 31.6 bits (70), Expect = 0.71
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 161 KPRHHHHHHHRHRHHH 176
+ + HHHH H HHH
Sbjct: 709 RLKREFHHHHHHHHHH 724
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 30.3 bits (69), Expect = 0.73
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 154 EEPTEEEKPRHHHHHHHRHRHHH 176
E T EE H H H HHH
Sbjct: 136 REATPEELLHGHAHPSGHHHHHH 158
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 30.9 bits (69), Expect = 0.96
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 67 DYILSSLTPNY----CAFLFSGNTRKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMK 122
D+ S TP L ++ + LD K R K+ +N + +
Sbjct: 270 DFYFRSRTPVELARRGNTLLQCLEKEFNAGIVLDDATKDRMKK---EDENGKRIREEFAD 326
Query: 123 RNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHH 170
+ K + +A + S ++ E E + HHHHHHH
Sbjct: 327 QTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENETTHHHHHHH 374
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Length = 136
Score = 29.5 bits (66), Expect = 1.1
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 138 QALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTE 182
+A S AV+ + + + E H H ++
Sbjct: 8 EAGASAPSPAVDGAVNQTARQAEADGTDIVTDHDRGVHGYHKQKA 52
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B),
lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Length = 216
Score = 30.0 bits (67), Expect = 1.2
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 162 PRHHHHHHHRHRHHHKQERTELSDR 186
+ + + R HHH + ++ R
Sbjct: 4 GQKNTNIDPRFPHHHPRPQSFWEAR 28
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 30.2 bits (69), Expect = 1.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 164 HHHHHHHRHRHHHKQERTELSDRHNLQENQR 194
HHHHHHH H + +L + L EN++
Sbjct: 5 HHHHHHHHSSGHIEGRHMKLEFMNLLSENKK 35
Score = 30.2 bits (69), Expect = 1.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 164 HHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHE 198
HHHHHHH H H + R + NL + +
Sbjct: 4 HHHHHHHHHSSGHIEGRHMKLEFMNLLSENKKENY 38
Score = 27.5 bits (62), Expect = 9.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 167 HHHHRHRHHHKQERTE 182
HHHH H HHH E
Sbjct: 3 HHHHHHHHHHSSGHIE 18
Score = 27.5 bits (62), Expect = 9.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 166 HHHHHRHRHH 175
HHHHH H HH
Sbjct: 3 HHHHHHHHHH 12
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.3
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 190 QENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQSHDDEETN-ERRHHDRNNRTH-DNR 247
+E QR R ++ S+ + R+ + +R ++ + +NR
Sbjct: 91 REEQRKRLQE-----------LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 248 HDERNSRQQNNE 259
++ QQ +
Sbjct: 140 IADKAFYQQPDA 151
Score = 28.2 bits (62), Expect = 4.7
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 138 QALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQ-ERTELSDR 186
Q R+ + +A +++E E+ K ++ +Q E+ ++++R
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAK----KDLEEWNQRQSEQVEKNKINNR 139
Score = 27.8 bits (61), Expect = 5.8
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 191 ENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDE 250
+ R E P S K R + E + ++E E+ D R E
Sbjct: 76 QADRLTQE-PESIRKWREEQRKRLQELDAASKVM---EQEWREKAKKDLEEWNQ--RQSE 129
Query: 251 RNSRQQNNERGSQ 263
+ + + N R +
Sbjct: 130 QVEKNKINNRIAD 142
Score = 27.8 bits (61), Expect = 6.3
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 207 RHSSKTEPSE-----RETKRNRQSHDDEETNERRHHDRN--NRTHDNRHDERNSRQQNNE 259
+ T+ E RE +R R D + R + + + ++ + + N+
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 260 RGSQDRRSNQ 269
+R +++
Sbjct: 136 I--NNRIADK 143
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 30.4 bits (69), Expect = 1.4
Identities = 11/82 (13%), Positives = 24/82 (29%)
Query: 164 HHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNR 223
HHHHHH + S +++ ++ R H + + ++ P + +
Sbjct: 3 HHHHHHSSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSAL 62
Query: 224 QSHDDEETNERRHHDRNNRTHD 245
H +
Sbjct: 63 AVDIPAPPAPFDHRIVTAKQGA 84
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 30.7 bits (68), Expect = 1.5
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 165 HHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQ 224
HHHHHH H HH + + + EN E +H + + +E E R +
Sbjct: 3 HHHHHHGH-HHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENK 61
Query: 225 SHDDEETNE 233
E
Sbjct: 62 LEKAEGVAT 70
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 30.2 bits (69), Expect = 1.5
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 154 EEPTEEEKPRHHHHHHHRHR 173
EE KPR H ++
Sbjct: 204 EENVVSTKPRFHFIADKQND 223
Score = 27.9 bits (63), Expect = 7.1
Identities = 1/14 (7%), Positives = 4/14 (28%)
Query: 162 PRHHHHHHHRHRHH 175
+ H ++
Sbjct: 210 TKPRFHFIADKQND 223
Score = 27.5 bits (62), Expect = 8.9
Identities = 3/19 (15%), Positives = 4/19 (21%)
Query: 158 EEEKPRHHHHHHHRHRHHH 176
EE H +
Sbjct: 204 EENVVSTKPRFHFIADKQN 222
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 30.2 bits (68), Expect = 1.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 167 HHHHRHRHHHKQERTE 182
HHHH H HHH E
Sbjct: 2 HHHHHHHHHHSSGHIE 17
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.60A
{Pyrococcus horikoshii}
Length = 260
Score = 29.8 bits (66), Expect = 1.5
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 86 TRKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQALRVN-D 144
+K+ N + + + KRV+ + + + +L K++ V++ + +
Sbjct: 177 YKKYPRGTNFWLWEGVKDKRVLLSVYRRADYVL-KTRSSLGENGIKRELLVIKTPKPIEE 235
Query: 145 SEAVENKIKEEPTEEEKPRHHHHHH 169
E + K + + HHHHHH
Sbjct: 236 LVRFEYEFKGNEPKLRREGHHHHHH 260
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function,
NPPSFA, national PROJ protein structural and functional
analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Length = 121
Score = 28.7 bits (64), Expect = 1.7
Identities = 5/52 (9%), Positives = 12/52 (23%), Gaps = 4/52 (7%)
Query: 119 PNMKRNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHH 170
VV + S+ ++ I + + + H
Sbjct: 74 RRAIEYFNSLGIS----VVTGVYGRISDVIKAFIGGKLKIDYDWKEKIEKEH 121
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 30.2 bits (67), Expect = 1.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 146 EAVENKIKEEPTEEEKPRHHHHHHH 170
+ + +E P EE P HHHHHH
Sbjct: 389 SLLRVESRETPGNEEHPLEHHHHHH 413
>3mxa_A SCV3V2(G19S); protein-DNA complex, hydrolase-DNA complex; HET: DNA
1PE; 2.30A {Chlamydomonas reinhardtii} PDB: 3mx9_A*
Length = 362
Score = 29.9 bits (66), Expect = 1.8
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 99 KKSRRKRVIALIQNLTQAQIPNMK-RNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEP- 156
K+ + V+ +I+ L A+ K + + R SE V +
Sbjct: 289 KQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDSLSE 348
Query: 157 TEEEKPRHHHHHHH 170
++ P HHHHHH
Sbjct: 349 KKKSSPLEHHHHHH 362
>3a9b_A Cellobiohydrolase; seven-stranded beta-alpha barrel, cellulase,
glycoside hydrolase family 6; HET: BGC CBI; 1.20A
{Coprinopsis cinerea} PDB: 3a64_A* 3abx_A* 3vof_A*
Length = 395
Score = 29.9 bits (66), Expect = 1.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 155 EPTEEEKPRHHHHHHH 170
EPT HHHHHH
Sbjct: 380 EPTYAAAALEHHHHHH 395
>1d1d_A Protein (capsid protein); two independent domains helical bundles,
virus/viral protein; NMR {Rous sarcoma virus} SCOP:
a.28.3.1 a.73.1.1
Length = 262
Score = 29.7 bits (66), Expect = 2.0
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 167 HHHHRHRHHHKQERTELSDRHNL---QENQRPRHE 198
HHHH H HHH E HN+ + + P
Sbjct: 2 HHHHHHHHHHSSGHIEGR--HNMPVVIKTEGPAWT 34
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural
genomics consortium, kines transport protein; 2.60A
{Homo sapiens} SCOP: b.26.1.2
Length = 104
Score = 28.4 bits (63), Expect = 2.0
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 384 RKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDP 443
+ DI + +QH + + DG + ++ T+VN K +
Sbjct: 32 QVDMDIKLTGQFIREQHCLFRSI----PQPDGE-----VVVTLEPCEGAETYVNGKLVTE 82
Query: 444 KRYVELLEKDVIKFG 458
+ L + I G
Sbjct: 83 P--LVLKSGNRIVMG 95
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 2.2
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 23/57 (40%)
Query: 23 SFS-ALIRYYQ--YR-------CLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYI 69
FS + YYQ Y L+ V+PFN S D LI++I
Sbjct: 510 RFSKQVTDYYQSIYAKYGAKGSTLI--------VVPFNQGS-KQD----VEALIEFI 553
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 29.7 bits (67), Expect = 2.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 164 HHHHHHHRHR 173
HHHHHHH H
Sbjct: 3 HHHHHHHHHH 12
Score = 28.9 bits (65), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 167 HHHHRHRHHHKQERTELSDRH 187
HHHH H HHH + D+H
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKH 23
Score = 28.9 bits (65), Expect = 3.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 166 HHHHHRHRHH 175
HHHHH H HH
Sbjct: 3 HHHHHHHHHH 12
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic
hexamer, C6 point symmetry, carboxysome; 1.80A
{Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Length = 125
Score = 28.2 bits (63), Expect = 2.4
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 135 QVVQALRVNDSEAVE--NKIKEEPTEEEKPRHHHHHHHRH 172
VV L ++ S VE + E PR HHHH H
Sbjct: 86 NVVAVLPIDFSPEVEPFREAAEGLNRRGVPRGLEHHHHHH 125
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 29.7 bits (66), Expect = 2.8
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 164 HHHHHHHRHRHHHKQERTELSDRH 187
HHHHHHH HHH + D+H
Sbjct: 3 HHHHHHH---HHHSSGHIDDDDKH 23
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 29.2 bits (66), Expect = 2.8
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 135 QVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHH 170
++V+ L + + + E E + HHHHHH
Sbjct: 335 RLVEVL-AAELAEARTALSDASRENESRKGHHHHHH 369
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 29.0 bits (64), Expect = 2.9
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 145 SEAVENKIKEEPTEEEKPRHHHHHHH 170
S + ++E HHHHHH
Sbjct: 224 SHPIH--WGSNTSKENPRTGHHHHHH 247
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA
binding protein, OB-fold, dioxan replication, DNA
binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3
PDB: 2pqa_B 2z6k_C
Length = 142
Score = 28.4 bits (63), Expect = 3.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 164 HHHHHHHRHRHHHKQERTELSDRHNLQENQRPR 196
HHHHHHH HHH E ++ + R R
Sbjct: 3 HHHHHHH---HHHSSGHIEGRHMVDMMDLPRSR 32
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 29.1 bits (64), Expect = 3.0
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 10/173 (5%)
Query: 74 TPNYCAFLFSGNTRKH----IPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMKRNLKRKS 129
AFLF ++ I +++ R L +++I +++ +
Sbjct: 96 NSLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDTLRLLKSEIKKLEQKIDMDE 155
Query: 130 PKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTEL---SDR 186
KK +Q V DS+ + + + E+ R R + + R
Sbjct: 156 KMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLFRFRCYLASLQGGELPNPKR 215
Query: 187 HNLQENQRPRHEK---PHSSDKHRHSSKTEPSERETKRNRQSHDDEETNERRH 236
++ + S H+ + R R ++RR
Sbjct: 216 LLAFASRPTKVAMGRLGIFSVSSFHALVAARTGEIGVRRRTQAMSRSASKRRS 268
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function,
PSI-2, protein structure initiative; HET: CDP; 1.85A
{Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2
PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Length = 146
Score = 28.3 bits (63), Expect = 3.0
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 138 QALRVNDSEAVENKIKEEPTEEEKPRHHHHHH 169
+ + D + ++ IK + EE HHHHHH
Sbjct: 118 EQFNLKDGDVIKILIKGDKDEEG---HHHHHH 146
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 29.3 bits (65), Expect = 3.3
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 159 EEKPRHHHHHH 169
+HHHHHH
Sbjct: 413 RSGTKHHHHHH 423
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate,
rossmann fold, alpha-aminoadipate pathway, fungal lysine
biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB:
2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Length = 394
Score = 29.3 bits (65), Expect = 3.3
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 151 KIKEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHN 188
+KE P + P H H H + + + R
Sbjct: 96 GLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFI 133
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
channel mechanosensitive, membrane protein; 3.50A
{Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Length = 174
Score = 28.6 bits (63), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 164 HHHHHHHRHRHHHKQERTELSDRHNLQE 191
HHHHHHH HHH + D+H L+
Sbjct: 3 HHHHHHH---HHHSSGHIDDDDKHMLKG 27
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural
genomics, joint C structural genomics, JCSG, protein
structure initiative; 1.83A {Thermotoga maritima} SCOP:
c.55.5.1 PDB: 1t3v_A
Length = 136
Score = 28.0 bits (62), Expect = 3.5
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 135 QVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRH 172
+V++ E V + + + + H HHHH H
Sbjct: 99 KVIKGASGTVEEVVNQYLSGQLKDSDYEVHDHHHHEHH 136
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.60A {Bacillus subtilis}
Length = 312
Score = 28.9 bits (65), Expect = 3.7
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 135 QVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHK 177
+++ + V + E + H H H H H H
Sbjct: 87 SAEKSMGQGHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHA 129
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 29.0 bits (65), Expect = 3.9
Identities = 15/173 (8%), Positives = 49/173 (28%), Gaps = 11/173 (6%)
Query: 85 NTRKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMK--RNLKRKSPKKKHQVVQALRV 142
++ + +I+ + + V ++++ I + R+ ++ + +++ +
Sbjct: 414 IAKQEKYEPSEEIKSE-VLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEI-- 470
Query: 143 NDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHS 202
A + + + P + R + +
Sbjct: 471 ----ASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDD 526
Query: 203 SDKHRHSSKTEPSERETKRNRQSHDDEETN-ERRHHDRNNRTHDNRHDERNSR 254
+ + R R+ +N RR R+N +N ++
Sbjct: 527 DSEISFRGNKNYNNRSQNRDYDDEPFRRSNNNRRSFSRSNDK-NNYSSRNSNI 578
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, unknown function; HET: MSE; 2.95A {Bacillus
subtilis} SCOP: c.77.1.4
Length = 345
Score = 28.7 bits (65), Expect = 4.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 134 HQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHH 169
Q + + N + ++ ++KEE T+EE HHHHHH
Sbjct: 310 RQAREMVSQNVAALIQEEVKEEKTDEEGGSHHHHHH 345
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 28.7 bits (65), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 146 EAVENKIKEEPTEEEKP---RHHHHHHH 170
+ V K+++ EEEK HHHHHH
Sbjct: 301 DTVLAKLEKTTWEEEKYDLNEGHHHHHH 328
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Salinibacter
ruber dsm 13855}
Length = 153
Score = 28.1 bits (62), Expect = 4.2
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 130 PKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHH 170
+ + A + + ++ + E P HHHHHH
Sbjct: 113 RDGAPEALTAWALAPDRSEFHREDIVRPDPEAPLEHHHHHH 153
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 28.8 bits (65), Expect = 4.2
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 421 IRLYIIDLESANGTFVN-NKKIDPKRYVELL----EKDVIKFGFSS-REYVLLHEHSKDS 474
+++ D+ +GTF+N D R+ +L E+D I+F +S Y L EH D
Sbjct: 37 VKVIATDM---DGTFLNSKGSYDHNRFQRILKQLQERD-IRFVVASSNPYRQLREHFPDC 92
Query: 475 DYDDDV 480
Sbjct: 93 HEQLTF 98
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 28.5 bits (64), Expect = 4.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 164 HHHHHHHRHR 173
HHHHHHH H
Sbjct: 3 HHHHHHHHHH 12
Score = 28.1 bits (63), Expect = 7.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 166 HHHHHRHRHH 175
HHHHH H HH
Sbjct: 3 HHHHHHHHHH 12
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 28.1 bits (63), Expect = 4.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 154 EEPTEEEKPRHHHHHHHRHRHHH 176
E TEEE H H H H H H
Sbjct: 140 REATEEELAHGHVHGAHDHHHDH 162
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 28.8 bits (65), Expect = 4.4
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 141 RVNDSEAVENKIKEEPTEEEKPRHHHHHH 169
V + + + P + E HHHHHH
Sbjct: 512 TVQQATRAS-QPELAPEDPEDLEHHHHHH 539
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 28.7 bits (64), Expect = 4.5
Identities = 19/117 (16%), Positives = 33/117 (28%)
Query: 165 HHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQ 224
HHHHHH QE E SS+ KT P R + +
Sbjct: 2 HHHHHHGSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAK 61
Query: 225 SHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHDRPQSSSNSH 281
E + R +D D ++ + + +++ ++
Sbjct: 62 RQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLYFQAGKPIPK 118
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer,
structural genomics; HET: PLP; 1.50A {Mycobacterium
tuberculosis} PDB: 3vom_A*
Length = 398
Score = 28.8 bits (65), Expect = 4.7
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 164 HHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKP 200
+HHHHHH ++ ++D+ + P KP
Sbjct: 4 YHHHHHHLESTSLYKKAGFMADQLT-PHLEIPTAIKP 39
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich,
hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB:
1u7q_A 2a00_A* 2a29_A*
Length = 156
Score = 27.9 bits (62), Expect = 4.8
Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 3/13 (23%)
Query: 164 HHHHHHHRHRHHH 176
HHHHHHH HHH
Sbjct: 3 HHHHHHH---HHH 12
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 27.6 bits (62), Expect = 4.9
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 144 DSEAVENKIKEEPTEEEKPRHHHHHH 169
D EA+E +I HHHHHH
Sbjct: 129 DKEALEQQILA--ALGGNEGHHHHHH 152
>3kog_A Putative pore-forming toxin; structural genomics, joint CENT
structural genomics, JCSG, protein structure initiative;
1.85A {Bacteroides vulgatus atcc 8482}
Length = 256
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 124 NLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHH 176
+ KSPK+ V + V+ + P E+ P H H H H H H
Sbjct: 195 QIIEKSPKRDGNPVASFTVDSYNTIV-----SPKNEQIPGHGHAPSHGHGHGH 242
>3mfn_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative, midwest center for
structural genomics; HET: MSE; 2.02A {Dyadobacter
fermentans}
Length = 157
Score = 27.9 bits (61), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 164 HHHHHHHRHRHH-----HKQERTELSDRHNLQENQR 194
HHHHHH R + H ++ ELS + + E +R
Sbjct: 5 HHHHHHSSGRENLYFQGHMIKKQELSAQEAVIEAKR 40
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET:
GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP:
c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Length = 315
Score = 28.5 bits (63), Expect = 5.3
Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 3/13 (23%)
Query: 164 HHHHHHHRHRHHH 176
HHHHHHH HHH
Sbjct: 3 HHHHHHH---HHH 12
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 28.4 bits (64), Expect = 5.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 153 KEEPTEEEKPRHHHHHHH 170
+ P +++ HHHHHHH
Sbjct: 454 HQFPGDDDDKHHHHHHHH 471
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin
fold, carbohydrate binding, domain swapping, O antigen
export; HET: PG4; 1.30A {Escherichia coli}
Length = 188
Score = 28.0 bits (62), Expect = 5.4
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 165 HHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPH-SSDKHRHSSK 211
HHHHHH HHH + +L E + H +P +++R
Sbjct: 2 HHHHHH---HHHHISSASGESQMSLDEIEDVYHTRPGYRPEEYRWGQG 46
>2joz_A Hypothetical protein YXEF; structure, GFT, NESG, lipoprotein,
structural genomics, PSI-2, protein structure
initiative; NMR {Bacillus subtilis} SCOP: b.60.1.1
Length = 135
Score = 27.5 bits (60), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 153 KEEPTEEEKPRHHHHHHH 170
+EE E+ K HHHHHH
Sbjct: 118 REEKDEKSKSLEHHHHHH 135
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 28.6 bits (64), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 161 KPRHHHHHHHRH 172
+ R HHHHHH H
Sbjct: 487 RIRPHHHHHHHH 498
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate
receptor, imprinting, protein evolution, signaling
protein; NMR {Monodelphis domestica}
Length = 151
Score = 27.7 bits (61), Expect = 5.5
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 158 EEEKPRHHHHHH 169
E+E+PRHHHHHH
Sbjct: 140 EKEEPRHHHHHH 151
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 28.5 bits (64), Expect = 5.5
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 164 HHHHHHHRHRHHHKQER------TELSDRHNLQENQR 194
HHHHHHH H H + + +L Q+
Sbjct: 2 HHHHHHHHHSSGHIDDDDKHMNYLSPAKIDSLFSAQK 38
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 27.6 bits (62), Expect = 5.6
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 154 EEPTEEEKPR--------HHHHHHHRHRHHH 176
E TEEE HHH H H H HHH
Sbjct: 140 REATEEELAHGHVHGAHDHHHDHDHDHHHHH 170
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt,
metalloprotein, sulfenic acid, sulfinic acid, nitrIle
hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A
{Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C*
2dd4_C*
Length = 243
Score = 28.1 bits (62), Expect = 5.7
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 164 HHHHHHHRHRHHHKQERTELSD 185
H H H H H H E+SD
Sbjct: 5 HDHDHDHDHDHKPAPMVEEVSD 26
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 27.7 bits (62), Expect = 6.0
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 101 SRRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQALRVND 144
+RR V A N + + R + K+ +++++ +A +
Sbjct: 1 TRRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDIL 44
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
unknown function; NMR {Nostoc SP}
Length = 94
Score = 26.7 bits (59), Expect = 6.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 160 EKPRHHHHHH 169
EK HHHHHH
Sbjct: 85 EKLEHHHHHH 94
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 28.2 bits (63), Expect = 6.1
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 144 DSEA-VENKIKEEPTEEEKPRHHHHHHH 170
DSEA + ++ +E HHHHHHH
Sbjct: 386 DSEANISGALERMRSESATHAHHHHHHH 413
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519
protein structure initiative, NEW YORK SGX research
center structural genomics; 2.40A {Bacillus subtilis}
SCOP: a.195.1.1
Length = 189
Score = 27.5 bits (61), Expect = 6.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 139 ALRVNDSEAVENKIKEEPTEEEKPRHHHHHH 169
A D + E + E+P E HHHHHH
Sbjct: 159 AHTHQDLQDEEKEQDEKPVVSEGGSHHHHHH 189
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 27.2 bits (60), Expect = 6.9
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 159 EEKPRHHHH--HHHRHRHHHKQERTELSDRHNLQENQRPRHEKPH 201
HHHH H RH ++ S ++ ++ H++ H
Sbjct: 4 HHHHHHHHHSSGHIEGRHMLEEPAASFSQPGSMGLDKNTVHDQEH 48
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 27.7 bits (61), Expect = 7.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 160 EKPRHHHHHHH 170
K +HHHHHHH
Sbjct: 230 NKLQHHHHHHH 240
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 27.8 bits (62), Expect = 8.3
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 165 HHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQ 224
HHHHHH +K + E +R R E H + +R + ++
Sbjct: 2 HHHHHHSSGVDNKFNK----------ERRRARREIRHLPNLNREQRRAFIRSLRDDPSQS 51
Query: 225 SHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQD 264
++ E + + + + +++
Sbjct: 52 ANLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKE 91
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 27.8 bits (61), Expect = 8.9
Identities = 32/207 (15%), Positives = 52/207 (25%), Gaps = 13/207 (6%)
Query: 164 HHHHHHHR---HRHHHKQERTELSDRHNLQ---ENQRPRHEKPHSSDKHRHSSKTEPSER 217
HHHHHH R H + + L + ++ P +
Sbjct: 5 HHHHHHSSGLVPRGSHMKLQFNLKAYFKTSADPTPAKDAIAALFEEANSTLLTRGAPEGQ 64
Query: 218 ETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHDRPQSS 277
K ++ R R HD R + + + +
Sbjct: 65 GAKVTEWKLGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIK 124
Query: 278 SNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKNNAQQPKQKPDFGLSGKLTEDTNTYN 337
+ H R K P+ + + E E A+ + PD LT
Sbjct: 125 VPADHELRMLKVPYIKSMENIE---GGIQLELEVGEAEMKNRVPDR----ILTLLEEKIE 177
Query: 338 GVVIKYSEPPDARKPKRRWRLYPFKGD 364
+R +PFK D
Sbjct: 178 AAQYGAKAEHWNLLWQREPMEHPFKED 204
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 28.0 bits (61), Expect = 8.9
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Query: 296 DEYEWGRKDANNEDNKNNAQQPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKR- 354
+ ++ K +P++ + + + NG R
Sbjct: 222 SVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQQSNRMYSVNGYTFGSLSGLSMCAEDRV 281
Query: 355 RWRLYPFKGDTQLPVLHIHRQ 375
+W L+ + + H Q
Sbjct: 282 KWYLFGMGNEVDVHAAFFHGQ 302
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio
cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Length = 340
Score = 27.6 bits (62), Expect = 9.2
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 102 RRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEK 161
+R+ + ++ NL ++P + LK++ L+ + + + E+
Sbjct: 275 KREAAVEVLDNLPIMEVPQAEALLKKQ-----QFSYSELKRLERWQQASANMQRLIEQFS 329
Query: 162 PRHHHHHHHRH 172
HHHHHHH H
Sbjct: 330 EHHHHHHHHHH 340
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 27.7 bits (61), Expect = 9.3
Identities = 14/51 (27%), Positives = 16/51 (31%)
Query: 167 HHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSER 217
HHHH H HHH H D + + E SER
Sbjct: 3 HHHHHHHHHHGLVPRGSMTVATGDPVDEAAALPGHPQDTYDPEADHESSER 53
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold,
apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Length = 179
Score = 27.2 bits (59), Expect = 9.3
Identities = 15/115 (13%), Positives = 27/115 (23%), Gaps = 6/115 (5%)
Query: 164 HHHHHHHRHRHHHKQERTE-----LSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERE 218
HHHHHH + + + N++ D P+ +E
Sbjct: 1 HHHHHHSQDPMSNTADFRLQTSTLCHSFLLASANKQDTDYLTDLLDNTNIDLTCVPNGQE 60
Query: 219 TKRN-RQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHD 272
+ Q D + H+ D + N +
Sbjct: 61 IIHSLLQLVGDFNQRFSQTHEIEPVAQSLGIDSDKPVDKTALEIFYLEILNGLFE 115
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor
complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens}
PDB: 3rnz_A* 1aug_A
Length = 223
Score = 27.5 bits (60), Expect = 9.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 135 QVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHH 170
+ +AL++ A ++ E E HHHHHH
Sbjct: 188 HITKALKIAAVTAAAHEDDIETGGGELHLEHHHHHH 223
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo
sapiens} PDB: 2zkr_6 1ysh_C
Length = 125
Score = 26.7 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 144 DSEAVENKIKEEPTEEEKPRHHHHH 168
DS+ + + E+ E+ P HHHHH
Sbjct: 102 DSDIIR-SMPEQTGEKGAPHHHHHH 125
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface,
cell adhesion; 2.70A {Campylobacter jejuni subsp}
Length = 379
Score = 27.5 bits (60), Expect = 9.8
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 164 HHHHHHHRHRHHHKQERTELSDRH 187
HHHHHHH HHH + D+H
Sbjct: 3 HHHHHHH---HHHSSGHIDDDDKH 23
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 27.7 bits (61), Expect = 9.9
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 143 NDSEAVENKIKEEPTEEEKPRHHHHH 168
S K E+ P HHHHH
Sbjct: 499 KTSAYFNFAFKGNNKEQIHPHHHHHH 524
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.389
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,468,549
Number of extensions: 458924
Number of successful extensions: 8112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7664
Number of HSP's successfully gapped: 293
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.2 bits)