RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14677
(483 letters)
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 78.9 bits (194), Expect = 2e-18
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 346 PPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQY 405
+ RL KG + L S +GR + +I + S +H ++
Sbjct: 3 SGSSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIES 62
Query: 406 RLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYV 465
++ I DL S+NGT +N+ +DP+ V L + DVIK G + V
Sbjct: 63 DSGNW-------------VIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILV 109
Query: 466 LLHE 469
Sbjct: 110 NFVS 113
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 158
Score = 70.6 bits (172), Expect = 4e-15
Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 5/129 (3%)
Query: 358 LYPFKGDTQLPVLHIHR-QSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGS 416
L P L I + + F +GR + ++ S+ H + + +
Sbjct: 8 LKPLPDSIIQESLEIQQGVNPFFIGRSED-CNCKIEDNRLSRVHCFIFKKRHAVGKSMYE 66
Query: 417 KGKRI--RLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHSKDS 474
+ ++ N +++NN ++ L + D IK + ++ + +
Sbjct: 67 SPAQGLDDIWYCHT-GTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEIN 125
Query: 475 DYDDDVQDD 483
D +
Sbjct: 126 DTTGLFNEG 134
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 122
Score = 63.2 bits (153), Expect = 6e-13
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 378 FLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVN 437
+GR +D+ + S +HA + + + + ++D+ S NGT VN
Sbjct: 32 VKLGRVSP-SDLALKDSEVSGKHAQITWN-----------STKFKWELVDMGSLNGTLVN 79
Query: 438 NKKIDPKRY--------VELLEKDVIKFGFSSREYVLLHEHSK 472
+ I VEL D+I G +++ YV + ++
Sbjct: 80 SHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQNE 122
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 54.8 bits (131), Expect = 4e-10
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 4/117 (3%)
Query: 357 RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGS 416
RL+ + + GRD+ + D P + Y +
Sbjct: 4 RLWALQDGFANLECV---NDNYWFGRDKS-CEYCFDEPLLKRTDKYRTYSKKHFRIFREV 59
Query: 417 KGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHSKD 473
K + I+ S NGTFVN + + + L I S + + + + D
Sbjct: 60 GPKNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVD 116
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 127
Score = 52.8 bits (126), Expect = 3e-09
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 362 KGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRI 421
+Q+ + + GR+ + S +H +
Sbjct: 22 ADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGN----------- 70
Query: 422 RLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVL 466
+++ S NGT++N +K++ L + D I G +L
Sbjct: 71 --LLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDIL 113
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 47.7 bits (113), Expect = 9e-08
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 24/104 (23%)
Query: 363 GDTQLPVLHIHR--------QSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTRED 414
G + LH +A +GR DI +D + S+ HA + T+Y
Sbjct: 2 GQQAVAYLHDIASGRGYPLQAAATRIGRLHD-NDIVLDSANVSRHHAVIVDTGTNY---- 56
Query: 415 GSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
I DL S+NG V +++I + V L + D I+
Sbjct: 57 ---------VINDLRSSNGVHVQHERI--RSAVTLNDGDHIRIC 89
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 44.1 bits (103), Expect = 3e-06
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 357 RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGS 416
RL + P + + ++ + +GR R + S H +
Sbjct: 6 RLLRLGAEEGEPHVLLRKRE-WTIGRRRGCDLSFPSNKLVSGDHCRIVVD---------- 54
Query: 417 KGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSRE 463
++ ++ S +GT +N K+ K+ L DVI + E
Sbjct: 55 --EKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNE 99
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 44.0 bits (103), Expect = 3e-06
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 26/132 (19%)
Query: 353 KRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSC----SKQHAALQYRLT 408
R W L L + +GR + C S+ H L+
Sbjct: 3 GRSWCLRRVGMSAG--WLLLEDGCEVTVGRGFG-VTYQLVSKICPLMISRNHCVLKQN-- 57
Query: 409 DYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSR------ 462
+ I+D +S NG ++N +++P R + + D I+ G
Sbjct: 58 ----------PEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAE 107
Query: 463 -EYVLLHEHSKD 473
EY + E +
Sbjct: 108 YEYEVTEEDWET 119
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 43.1 bits (101), Expect = 5e-06
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 369 VLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDL 428
+L+ + +G+ DI + +QH + + + ++
Sbjct: 17 LLYHIKDGVTRVGQVDM--DIKLTGQFIREQHCLFRSI---------PQPDGEVVVTLEP 65
Query: 429 ESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
T+VN K + + L + I G
Sbjct: 66 CEGAETYVNGKLVTEP--LVLKSGNRIVMG 93
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 41.6 bits (97), Expect = 1e-05
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 375 QSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGT 434
S L GR + DI + P SKQH ++ + + + S N T
Sbjct: 22 LSTCLFGRGIE-CDIRIQLPVVSKQHCKIEIHEQEA-------------ILHNFSSTNPT 67
Query: 435 FVNNKKIDPKRYVELLEKDVIKFGFSSREY 464
VN ID V L DVI S Y
Sbjct: 68 QVNGSVID--EPVRLKHGDVITIIDRSFRY 95
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.0 bits (90), Expect = 1e-04
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 14/113 (12%)
Query: 357 RLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGS 416
RL+ + P + + + + V CS+ L T
Sbjct: 2 RLWLESPPGEAPPIFL-PSDGQALVL-GRGPLTQVTDRKCSRTQVELVADPETRT----- 54
Query: 417 KGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHE 469
+ N + +++ P L D + L E
Sbjct: 55 -------VAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLVNGLHPLTLRWE 100
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 32.0 bits (72), Expect = 0.13
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 3/126 (2%)
Query: 162 PRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRH-EKPHSSDKHRHSSKTEPSERETK 220
HH + H + + + QRP P S + E R+
Sbjct: 86 LNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPA 145
Query: 221 RN--RQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHDRPQSSS 278
+ + + + H N + + Q+ + + + S
Sbjct: 146 GDFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEF 205
Query: 279 NSHHRD 284
+ +D
Sbjct: 206 DDLKKD 211
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 289
Score = 31.1 bits (69), Expect = 0.27
Identities = 11/95 (11%), Positives = 22/95 (23%)
Query: 156 PTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPS 215
E+ H H H + S++ + S T +
Sbjct: 90 EMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADPHIWLSPTLVKRQATTIA 149
Query: 216 ERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDE 250
+ + + + D E N R +
Sbjct: 150 KELAELDPDNRDQYEANLAAFLAELERLNQELGQI 184
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 28.3 bits (63), Expect = 2.2
Identities = 10/69 (14%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 97 IRKKSRRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEP 156
+ K+ + ++++L + N + ++ +P K ++ LR D+ ++ I +
Sbjct: 13 TKGKNLESEIHTVLKHLVE----NNQLSVHEDAPAKFLRLTAFLRNVDAGVLQ-SIWHKL 67
Query: 157 TEEEKPRHH 165
+++ R
Sbjct: 68 HQQKDYRRW 76
>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
(Petroselinum crispum), PAL1 [TaxId: 4043]}
Length = 692
Score = 28.0 bits (62), Expect = 3.2
Identities = 9/53 (16%), Positives = 15/53 (28%)
Query: 162 PRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEP 214
P H H+ +HH Q H L + + + K +
Sbjct: 274 PEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDR 326
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 26.4 bits (57), Expect = 6.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 154 EEPTEEEKPRHHHHHHHRH 172
EE KPR H ++
Sbjct: 203 EENVVSTKPRFHFIADKQN 221
>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 293
Score = 26.0 bits (57), Expect = 9.8
Identities = 8/56 (14%), Positives = 14/56 (25%)
Query: 171 RHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQSH 226
+H H + E L + P E + T+ + S
Sbjct: 105 KHSHAGELEALGGVKPAVLTRSGDPSQPLLPQHSSLETQLFCEQGDGGTEGHSPSG 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.389
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,776,790
Number of extensions: 82647
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 33
Length of query: 483
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,185,626
Effective search space: 467136644
Effective search space used: 467136644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)