BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14678
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 92.8 bits (229), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/83 (55%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 33 EALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 92
E G FILHDGPPYANG H+GHA+NKILKD +R +QG YVPGWD HGLPI
Sbjct: 42 EKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPI 101
Query: 93 ELKAITSKD---KLLSPLDIRKK 112
E +A+T K K +S + R+K
Sbjct: 102 E-QALTKKGVDRKKMSTAEFREK 123
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 15 NIPDLSECGFSELYSWQREAL--------NGKPEFILHDGPPYANGTPHIGHAVNKILKD 66
N P L E L W+RE + G P + +++GPP ANG PH+GHA + KD
Sbjct: 9 NFPKLEE---EVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKD 65
Query: 67 ITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGL 114
+ R ++G GWD HGLP+EL+ + K L S +I G+
Sbjct: 66 LFPRYKTMRGYYAPRRAGWDTHGLPVELE-VEKKLGLKSKREIEAYGI 112
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna
Synthetase Complexed With Methionine
Length = 551
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 63
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 75
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 62
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 62
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli
Complexed With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionine And Adenosine
Length = 551
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 62
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus
Ligand-Free Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus
Ligand-Free Valyl-Trna Synthetase
Length = 862
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 36 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIEL 94
+GKP F++ PP G+ H+GHA++ L+D +R ++G ++PG D G+ ++
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQV 89
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 108
Y N PHIGH + ++ D+ R + ++G+RV + G D HG + A +K K +SP D
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 108
Y N PHIGH + ++ D+ R + ++G+RV + G D HG + A +K K +SP D
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 108
Y N PHIGH + ++ D+ R + ++G+RV + G D HG + A +K K +SP D
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 24/53 (45%)
Query: 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89
G F + Y NG PHIGHA I D R L G V Y+ G D HG
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG 62
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI 97
PY +G H+GH N + D+ R + GK V GWD GLP E A+
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAV 111
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus
Complexed With A Sulphamoyl Analogue Of
Leucyl-Adenylate In The Synthetic Site And An Adduct Of
Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI 97
PY +G H+GH N + D+ R +QG V + GWD GLP E A+
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAAL 91
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus
Complexed With A Pre-Transfer Editing Substrate
Analogue In Both Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed
With With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed
With With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed
With A Trnaleu Transcript In The Post-Editing
Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed
With A Trnaleu Transcript In The Post-Editing
Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus
Complexed With A Sulphamoyl Analogue Of
Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus
Complexed With A Post-Transfer Editing Substrate
Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus
Complexed With A Trna(Leu) Transcript With
5-Fluoro-1,3-Dihydro-1- Hydroxy-2,1-Benzoxaborole
(An2690) Forming An Adduct To The Ribose Of
Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus
Complexed With A Trna(Leu) Transcript With
5-Fluoro-1,3-Dihydro-1- Hydroxy-2,1-Benzoxaborole
(An2690) Forming An Adduct To The Ribose Of
Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI 97
PY +G H+GH N + D+ R +QG V + GWD GLP E A+
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAAL 91
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 108
Y NG PHIGHA I D R L G V+++ G D HG+ + A + + ++P D
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSA---RKEGITPRD 91
Query: 109 IRKKGLHLPRLEASLL 124
+ + R A +L
Sbjct: 92 LADRNTSAFRRMAEVL 107
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 41 FILHDGPPYANGTPHIGHAVNKIL-KDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI 97
+++ PYANG H GH L DI +R L+G+ V ++ G D HG PI +A+
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 37 GKPEFILHDGPPYANGTP-HIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK 95
K +F D PY +G+ H+GH DI R L+G V + GWD GLP E
Sbjct: 34 SKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVLHPIGWDAFGLPAEQY 93
Query: 96 AITS 99
A++S
Sbjct: 94 ALSS 97
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96
Y N PH+GHA I D R L+ V ++ G D HGL I+ KA
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA 62
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 39.3 bits (90), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 108
Y N +PHIGH + ++ D+ R + ++G+ V + G D HG + A + + +SP+D
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKV---AEAAAKQGVSPMD 92
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89
Y N PH+GHA ++ D R + L G R ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89
Y N PH+GHA ++ D R + L G R ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89
Y N PH+GHA ++ D R + L G R ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 92
PY +G H+GHA + D+ R +QG V + W G PI
Sbjct: 43 PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPI 87
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 92
PY +G H+GHA + D+ R +QG V + W G PI
Sbjct: 43 PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPI 87
>pdb|1FCQ|A Chain A, Crystal Structure (Monoclinic) Of Bee Venom Hyaluronidase
pdb|1FCU|A Chain A, Crystal Structure (Trigonal) Of Bee Venom Hyaluronidase
pdb|1FCV|A Chain A, Crystal Structure Of Bee Venom Hyaluronidase In Complex
With Hyaluronic Acid Tetramer
pdb|2J88|A Chain A, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 350
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 63 ILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLL-----SPLDIRKKGLHLP 117
+L + LR NL G+RV V G L I + TS+ K+L D R L
Sbjct: 222 LLPSVYLRWNLTSGERVGLVGGRVKEALRIARQMTTSRKKVLPYYWYKYQDRRDTDLSRA 281
Query: 118 RLEASL 123
LEA+L
Sbjct: 282 DLEATL 287
>pdb|1SU6|A Chain A, Carbon Monoxide Dehydrogenase From Carboxydothermus
Hydrogenoformans: Co Reduced State
pdb|1SU7|A Chain A, Carbon Monoxide Dehydrogenase From Carboxydothermus
Hydrogenoformans- Dtt Reduced State
pdb|1SU8|A Chain A, Carbon Monoxide Induced Decomposition Of The Active Site
[ni-4fe-5s] Cluster Of Co Dehydrogenase
pdb|1SUF|A Chain A, Carbon Monoxide Dehydrogenase From Carboxydothermus
Hydrogenoformans- Inactive State
Length = 636
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 92 IELKAITSKDKLLSPLDIRKKGLHLP 117
+EL T+ DKLL+ ++ R+ GL LP
Sbjct: 610 VELDPETAADKLLAAINERRAGLGLP 635
>pdb|3B51|X Chain X, Ni,Fe-Codh-600 Mv State
pdb|3B52|X Chain X, Ni,Fe-Codh-600 Mv State + Co2
pdb|3B53|X Chain X, Ni,Fe-Codh-320 Mv State
pdb|3I39|X Chain X, Ni,Fe-Codh-320 Mv+cn State
pdb|2YIV|X Chain X, Ni,Fe-Codh With N-Butylisocyanate State
Length = 656
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 92 IELKAITSKDKLLSPLDIRKKGLHLP 117
+EL T+ DKLL+ ++ R+ GL LP
Sbjct: 630 VELDPETAADKLLAAINERRAGLGLP 655
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 55 HIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGL 114
++G ++LKD R N +GK + V D +PI+ K + + + + K GL
Sbjct: 441 NLGKNKAEVLKDENSRLNAARGKSL-IVAELDKDKMPIDPKPVKIESVMTEQQLVEKNGL 499
Query: 115 HLPRLEAS 122
H R+ A+
Sbjct: 500 HYYRIAAT 507
>pdb|3H7J|A Chain A, Crystal Structure Of Bacb, An Enzyme Involved In Bacilysin
Synthesis, In Monoclinic Form
pdb|3H7J|B Chain B, Crystal Structure Of Bacb, An Enzyme Involved In Bacilysin
Synthesis, In Monoclinic Form
pdb|3H7Y|A Chain A, Crystal Structure Of Bacb, An Enzyme Involved In Bacilysin
Synthesis, In Tetragonal Form
pdb|3H7Y|B Chain B, Crystal Structure Of Bacb, An Enzyme Involved In Bacilysin
Synthesis, In Tetragonal Form
Length = 243
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 24/138 (17%)
Query: 9 LQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPH------IGHAVNK 62
+Q+L+ P L E E Q + G E ++ PP+ N PH IG V+
Sbjct: 7 MQELYFPTPKLIEW---ENGVRQYSTVRGDTEVLMSYVPPHTNVEPHQHKEVQIGMVVSG 63
Query: 63 ----ILKDITLRSNLLQGKRVH--YVP-----GWDCHGLPIELKAITSKDKLLSP----L 107
+ D+T + L+ + +VP D + I++K + + + SP L
Sbjct: 64 ELMMTVGDVTRKMTALESAYIAPPHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYFL 123
Query: 108 DIRKKGLHLPRLEASLLV 125
DI K LP +E + V
Sbjct: 124 DIFKTRDLLPGMEVTFFV 141
>pdb|3IEH|A Chain A, Crystal Structure Of Putative Metallopeptidase
(Yp_001051774.1) From Shewanella Baltica Os155 At 2.45 A
Resolution
Length = 276
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 1 ILEYISLYLQDLFKNI-----PDLSECGFSELYSWQREALNGKPEFILHDGPPYAN 51
+L ++S DLF+ + P ++ GFS + + + N F+ +G P AN
Sbjct: 86 LLHFLSEASADLFERVNLSLLPLVNPTGFSRGHRFNKYGENPNRGFVFENGKPKAN 141
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 35 LNGKPEFILHDG---PPYANGTPHIGHAVNKILKDITLRSNLLQGK 77
L PEF L D P +A G P G ++LK L + L+G+
Sbjct: 245 LKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE 290
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 35 LNGKPEFILHDG---PPYANGTPHIGHAVNKILKDITLRSNLLQGK 77
L PEF L D P +A G P G ++LK L + L+G+
Sbjct: 245 LKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE 290
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 35 LNGKPEFILHDG---PPYANGTPHIGHAVNKILKDITLRSNLLQGK 77
L PEF L D P +A G P G ++LK L + L+G+
Sbjct: 245 LKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,254,251
Number of Sequences: 62578
Number of extensions: 183418
Number of successful extensions: 534
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 43
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)