Query psy14678
Match_columns 129
No_of_seqs 172 out of 1293
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:51:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00396 leuS_bact leucyl-tRN 99.9 4.1E-26 8.8E-31 205.5 12.9 111 3-127 4-115 (842)
2 COG0143 MetG Methionyl-tRNA sy 99.9 4.4E-26 9.5E-31 197.6 10.4 88 37-127 3-91 (558)
3 PRK00390 leuS leucyl-tRNA synt 99.9 2.4E-25 5.2E-30 199.7 12.6 110 3-127 8-118 (805)
4 TIGR00422 valS valyl-tRNA synt 99.9 5.7E-25 1.2E-29 198.0 12.3 114 3-127 8-135 (861)
5 PRK13208 valS valyl-tRNA synth 99.9 5.9E-25 1.3E-29 196.6 11.8 112 3-127 13-137 (800)
6 cd00814 MetRS_core catalytic c 99.9 4.8E-25 1E-29 178.9 9.8 85 40-127 1-86 (319)
7 PF09334 tRNA-synt_1g: tRNA sy 99.9 1.5E-25 3.2E-30 187.2 6.8 84 41-127 1-85 (391)
8 PRK05743 ileS isoleucyl-tRNA s 99.9 9E-25 1.9E-29 198.1 12.2 115 4-127 23-148 (912)
9 PLN02224 methionine-tRNA ligas 99.9 7E-25 1.5E-29 192.1 10.0 88 37-127 67-155 (616)
10 COG0495 LeuS Leucyl-tRNA synth 99.9 8.9E-25 1.9E-29 195.5 10.8 110 4-127 9-120 (814)
11 PLN02563 aminoacyl-tRNA ligase 99.9 1.2E-24 2.6E-29 198.0 11.9 112 4-127 84-197 (963)
12 TIGR00392 ileS isoleucyl-tRNA 99.9 1.8E-24 4E-29 194.6 11.8 116 3-127 9-139 (861)
13 PRK13804 ileS isoleucyl-tRNA s 99.9 2.3E-24 5E-29 196.3 12.4 115 4-127 28-156 (961)
14 cd00817 ValRS_core catalytic c 99.9 1.4E-24 3E-29 180.5 9.8 89 39-127 1-103 (382)
15 PLN02843 isoleucyl-tRNA synthe 99.9 2.6E-24 5.6E-29 196.2 12.4 115 3-127 6-132 (974)
16 cd00668 Ile_Leu_Val_MetRS_core 99.9 1.2E-24 2.5E-29 175.7 9.0 85 40-127 1-99 (312)
17 PRK12268 methionyl-tRNA synthe 99.9 1.1E-24 2.5E-29 187.4 9.5 87 38-127 2-90 (556)
18 PLN02381 valyl-tRNA synthetase 99.9 2.9E-24 6.3E-29 197.3 12.4 91 37-127 126-231 (1066)
19 PRK06039 ileS isoleucyl-tRNA s 99.9 3E-24 6.6E-29 195.7 12.4 115 4-127 15-144 (975)
20 PF00133 tRNA-synt_1: tRNA syn 99.9 1.4E-24 3.1E-29 189.2 9.6 110 9-127 2-126 (601)
21 PLN02943 aminoacyl-tRNA ligase 99.9 2.9E-24 6.3E-29 195.6 11.6 104 24-127 66-190 (958)
22 PRK05729 valS valyl-tRNA synth 99.9 3.1E-24 6.8E-29 193.6 11.5 112 4-127 13-138 (874)
23 cd00812 LeuRS_core catalytic c 99.9 3E-24 6.5E-29 174.2 9.1 85 40-127 1-86 (314)
24 PTZ00427 isoleucine-tRNA ligas 99.9 6.9E-24 1.5E-28 196.4 12.5 91 37-127 100-205 (1205)
25 cd00818 IleRS_core catalytic c 99.9 3.1E-24 6.7E-29 175.9 9.1 89 39-127 1-104 (338)
26 PRK00133 metG methionyl-tRNA s 99.9 4.2E-24 9.2E-29 188.3 10.4 86 39-127 2-88 (673)
27 PLN02610 probable methionyl-tR 99.9 5.6E-24 1.2E-28 190.9 10.5 88 37-127 15-104 (801)
28 PRK12267 methionyl-tRNA synthe 99.9 6.3E-24 1.4E-28 186.3 10.2 87 38-127 3-90 (648)
29 PRK14900 valS valyl-tRNA synth 99.9 1.8E-23 3.8E-28 191.9 12.1 114 4-127 23-151 (1052)
30 PLN02882 aminoacyl-tRNA ligase 99.9 2.7E-23 5.9E-28 192.1 12.7 115 4-127 12-141 (1159)
31 PRK11893 methionyl-tRNA synthe 99.9 1.7E-23 3.6E-28 177.8 10.5 86 39-127 1-87 (511)
32 cd00672 CysRS_core catalytic c 99.9 2E-23 4.4E-28 162.2 9.8 86 37-127 19-105 (213)
33 TIGR00395 leuS_arch leucyl-tRN 99.9 1.9E-23 4.2E-28 189.9 11.1 111 5-127 3-135 (938)
34 TIGR00398 metG methionyl-tRNA 99.9 1.5E-23 3.2E-28 179.6 9.7 84 41-127 1-85 (530)
35 PTZ00419 valyl-tRNA synthetase 99.9 3.1E-23 6.7E-28 189.3 12.1 91 37-127 58-163 (995)
36 PLN02959 aminoacyl-tRNA ligase 99.9 4.3E-23 9.4E-28 189.8 11.6 91 2-99 15-105 (1084)
37 COG0525 ValS Valyl-tRNA synthe 99.9 4.8E-23 1E-27 184.9 11.3 106 22-127 9-135 (877)
38 COG0060 IleS Isoleucyl-tRNA sy 99.9 4.7E-23 1E-27 186.3 9.7 91 36-126 46-150 (933)
39 TIGR03447 mycothiol_MshC cyste 99.8 1.3E-20 2.9E-25 158.7 9.1 83 39-126 37-120 (411)
40 KOG0435|consensus 99.8 1.3E-20 2.7E-25 165.2 7.2 108 5-127 35-143 (876)
41 PRK12418 cysteinyl-tRNA synthe 99.8 3.7E-20 8.1E-25 154.9 9.4 82 40-126 11-93 (384)
42 TIGR00435 cysS cysteinyl-tRNA 99.8 6.8E-20 1.5E-24 156.2 9.5 86 37-127 20-106 (465)
43 PRK00260 cysS cysteinyl-tRNA s 99.8 1.2E-19 2.5E-24 154.5 9.7 85 37-126 22-107 (463)
44 KOG0432|consensus 99.8 1.4E-19 3.1E-24 161.7 10.4 99 22-120 50-163 (995)
45 KOG0436|consensus 99.8 1.1E-19 2.3E-24 153.3 8.9 87 37-126 37-124 (578)
46 PTZ00399 cysteinyl-tRNA-synthe 99.8 2.7E-19 6E-24 157.8 9.5 83 40-127 62-147 (651)
47 cd00671 ArgRS_core catalytic c 99.8 3.3E-19 7.2E-24 137.5 8.6 84 40-127 1-85 (212)
48 PLN02946 cysteine-tRNA ligase 99.8 7.6E-19 1.6E-23 152.7 9.9 83 40-127 82-165 (557)
49 PRK14535 cysS cysteinyl-tRNA s 99.8 2.9E-18 6.3E-23 151.4 10.2 83 42-127 250-333 (699)
50 PRK01611 argS arginyl-tRNA syn 99.7 7.2E-18 1.6E-22 144.7 10.9 110 4-127 87-197 (507)
51 PRK14536 cysS cysteinyl-tRNA s 99.7 1.3E-17 2.9E-22 143.2 10.3 83 40-127 25-118 (490)
52 cd00802 class_I_aaRS_core cata 99.7 1.5E-17 3.2E-22 120.5 8.6 76 43-121 1-77 (143)
53 PRK14534 cysS cysteinyl-tRNA s 99.7 5.9E-17 1.3E-21 138.9 9.9 84 41-127 22-116 (481)
54 PF01406 tRNA-synt_1e: tRNA sy 99.7 3.4E-17 7.5E-22 133.2 7.5 83 40-127 10-93 (300)
55 cd00674 LysRS_core_class_I cat 99.7 2.6E-16 5.7E-21 130.6 9.4 85 38-127 18-121 (353)
56 COG0215 CysS Cysteinyl-tRNA sy 99.7 1.4E-16 3E-21 135.7 7.6 84 39-127 23-107 (464)
57 PRK12300 leuS leucyl-tRNA synt 99.6 4.3E-15 9.3E-20 135.1 7.0 74 54-127 1-96 (897)
58 KOG0434|consensus 99.5 1.3E-14 2.9E-19 128.3 8.3 83 18-100 9-99 (1070)
59 KOG0433|consensus 99.5 5.6E-14 1.2E-18 124.7 9.7 90 26-119 46-139 (937)
60 KOG0437|consensus 99.4 1.5E-13 3.2E-18 122.3 6.0 89 4-99 16-104 (1080)
61 PRK00750 lysK lysyl-tRNA synth 99.4 3.4E-13 7.4E-18 116.4 6.7 88 38-127 22-127 (510)
62 KOG2007|consensus 99.4 1.7E-12 3.8E-17 111.4 8.3 86 40-127 57-146 (586)
63 KOG1247|consensus 99.3 1.2E-12 2.6E-17 110.8 3.4 88 37-127 12-101 (567)
64 TIGR00467 lysS_arch lysyl-tRNA 99.2 1.1E-11 2.4E-16 107.4 5.9 84 39-127 18-120 (515)
65 TIGR00456 argS arginyl-tRNA sy 99.1 1.6E-10 3.5E-15 100.7 8.7 77 5-93 90-166 (566)
66 COG0018 ArgS Arginyl-tRNA synt 99.1 1.9E-10 4.2E-15 100.8 8.2 82 3-95 91-173 (577)
67 PF00750 tRNA-synt_1d: tRNA sy 99.1 1.5E-10 3.3E-15 95.8 5.3 76 9-96 2-77 (354)
68 PRK12451 arginyl-tRNA syntheta 99.0 1.2E-09 2.6E-14 95.4 8.2 60 37-96 111-170 (562)
69 PLN02286 arginine-tRNA ligase 98.9 2.5E-09 5.5E-14 93.7 8.0 60 37-96 115-174 (576)
70 cd09287 GluRS_non_core catalyt 98.2 2E-06 4.3E-11 68.5 5.0 42 46-92 6-47 (240)
71 PRK04156 gltX glutamyl-tRNA sy 97.9 1.5E-05 3.3E-10 70.2 4.5 46 42-92 102-147 (567)
72 KOG1195|consensus 97.7 7.2E-05 1.6E-09 65.1 5.3 70 3-83 85-154 (567)
73 TIGR00463 gltX_arch glutamyl-t 97.4 0.00021 4.6E-09 63.0 4.8 45 41-90 93-137 (560)
74 PF01921 tRNA-synt_1f: tRNA sy 97.3 0.00019 4.2E-09 60.2 3.1 51 38-89 22-72 (360)
75 COG1384 LysS Lysyl-tRNA synthe 97.1 0.00095 2.1E-08 58.2 5.2 50 39-89 19-68 (521)
76 KOG4426|consensus 97.0 0.0016 3.4E-08 56.5 5.9 52 37-88 186-237 (656)
77 PLN02486 aminoacyl-tRNA ligase 97.0 0.0061 1.3E-07 51.6 9.3 86 26-127 60-147 (383)
78 PRK12285 tryptophanyl-tRNA syn 96.8 0.01 2.3E-07 49.9 9.3 85 27-127 54-138 (368)
79 TIGR03838 queuosine_YadB gluta 96.5 0.0033 7.1E-08 50.9 4.2 39 47-87 6-44 (272)
80 cd00418 GlxRS_core catalytic c 96.5 0.0023 4.9E-08 50.7 3.0 40 46-87 6-45 (230)
81 PF00749 tRNA-synt_1c: tRNA sy 96.5 0.0026 5.6E-08 52.2 3.3 39 47-87 7-45 (314)
82 cd00805 TyrRS_core catalytic c 96.4 0.0047 1E-07 49.5 4.5 71 49-126 8-81 (269)
83 PLN03233 putative glutamate-tR 96.3 0.0028 6E-08 55.6 2.9 43 42-86 12-54 (523)
84 cd00808 GluRS_core catalytic c 96.3 0.0033 7.1E-08 50.0 2.9 40 46-87 6-45 (239)
85 cd00807 GlnRS_core catalytic c 96.3 0.0033 7.2E-08 50.1 3.0 42 44-87 4-45 (238)
86 COG0008 GlnS Glutamyl- and glu 96.3 0.0034 7.4E-08 54.4 3.1 44 42-87 10-53 (472)
87 PTZ00402 glutamyl-tRNA synthet 96.2 0.0036 7.7E-08 55.8 2.9 43 42-86 53-95 (601)
88 TIGR00440 glnS glutaminyl-tRNA 96.2 0.0063 1.4E-07 53.4 4.2 40 45-86 4-43 (522)
89 PRK05347 glutaminyl-tRNA synth 96.2 0.0039 8.5E-08 55.0 2.9 43 42-86 30-72 (554)
90 PLN02907 glutamate-tRNA ligase 96.1 0.0063 1.4E-07 55.2 4.2 44 42-87 214-257 (722)
91 PRK13354 tyrosyl-tRNA syntheta 96.1 0.039 8.5E-07 47.0 8.5 76 38-121 31-109 (410)
92 PRK05710 glutamyl-Q tRNA(Asp) 96.0 0.0052 1.1E-07 50.4 2.9 43 43-87 7-49 (299)
93 PTZ00437 glutaminyl-tRNA synth 96.0 0.006 1.3E-07 54.1 3.1 46 38-86 49-94 (574)
94 cd00395 Tyr_Trp_RS_core cataly 95.9 0.017 3.7E-07 46.5 5.2 70 50-126 8-80 (273)
95 PRK12410 glutamylglutaminyl-tR 95.7 0.0087 1.9E-07 51.5 3.0 39 47-87 5-43 (433)
96 TIGR00464 gltX_bact glutamyl-t 95.7 0.014 2.9E-07 50.5 4.2 39 46-86 6-44 (470)
97 PLN02859 glutamine-tRNA ligase 95.6 0.01 2.2E-07 54.4 3.1 31 42-72 265-295 (788)
98 PRK12558 glutamyl-tRNA synthet 95.5 0.011 2.3E-07 51.0 2.9 26 46-71 7-32 (445)
99 PRK14895 gltX glutamyl-tRNA sy 95.5 0.018 4E-07 50.4 4.2 41 44-86 7-47 (513)
100 PRK14703 glutaminyl-tRNA synth 95.4 0.014 3.1E-07 53.4 3.4 39 42-82 32-70 (771)
101 PRK01406 gltX glutamyl-tRNA sy 95.4 0.013 2.8E-07 50.7 3.0 42 43-86 6-47 (476)
102 cd00806 TrpRS_core catalytic c 95.3 0.057 1.2E-06 43.6 6.3 65 50-127 8-72 (280)
103 PRK08560 tyrosyl-tRNA syntheta 95.2 0.12 2.5E-06 42.7 8.0 74 39-127 29-102 (329)
104 PLN02627 glutamyl-tRNA synthet 95.0 0.031 6.8E-07 49.3 4.3 42 43-86 47-88 (535)
105 PTZ00126 tyrosyl-tRNA syntheta 94.8 0.061 1.3E-06 45.6 5.3 77 39-127 65-141 (383)
106 TIGR00234 tyrS tyrosyl-tRNA sy 94.2 0.13 2.8E-06 43.4 6.0 68 40-115 30-100 (377)
107 PRK05912 tyrosyl-tRNA syntheta 94.2 0.33 7.1E-06 41.3 8.5 101 7-120 5-108 (408)
108 PRK00927 tryptophanyl-tRNA syn 94.1 0.12 2.6E-06 42.7 5.6 63 50-127 10-72 (333)
109 TIGR00233 trpS tryptophanyl-tR 93.8 0.19 4.2E-06 41.5 6.2 32 49-84 10-41 (328)
110 PRK12284 tryptophanyl-tRNA syn 93.6 0.23 5E-06 42.8 6.5 66 49-127 10-75 (431)
111 PLN02886 aminoacyl-tRNA ligase 93.1 0.2 4.3E-06 42.7 5.3 63 50-127 55-117 (389)
112 COG0162 TyrS Tyrosyl-tRNA synt 92.9 0.84 1.8E-05 39.0 8.8 100 9-121 6-108 (401)
113 COG0180 TrpS Tryptophanyl-tRNA 92.3 0.49 1.1E-05 39.3 6.4 73 39-127 5-79 (314)
114 PRK12556 tryptophanyl-tRNA syn 92.1 0.43 9.3E-06 39.6 6.0 65 50-127 12-76 (332)
115 PRK12282 tryptophanyl-tRNA syn 91.8 0.51 1.1E-05 39.2 6.0 64 50-127 11-74 (333)
116 PRK12283 tryptophanyl-tRNA syn 91.0 0.66 1.4E-05 39.7 6.0 63 50-127 11-74 (398)
117 PF00579 tRNA-synt_1b: tRNA sy 90.9 0.62 1.3E-05 37.3 5.5 75 40-127 5-81 (292)
118 KOG1147|consensus 89.5 0.34 7.4E-06 43.3 3.1 43 42-89 201-243 (712)
119 KOG1148|consensus 89.0 0.18 4E-06 45.3 1.1 20 42-61 249-268 (764)
120 KOG2145|consensus 88.7 1.5 3.3E-05 36.7 6.2 51 29-85 75-125 (397)
121 PTZ00348 tyrosyl-tRNA syntheta 87.2 2.1 4.5E-05 39.1 6.7 40 39-83 31-71 (682)
122 COG1656 Uncharacterized conser 74.3 3.9 8.4E-05 31.1 3.2 30 68-99 18-47 (165)
123 PF01927 Mut7-C: Mut7-C RNAse 71.3 3.2 6.9E-05 30.3 2.1 30 68-99 12-41 (147)
124 PF07394 DUF1501: Protein of u 68.1 27 0.00059 28.9 7.2 58 62-126 231-290 (392)
125 PF14671 DSPn: Dual specificit 66.0 12 0.00027 27.5 4.2 55 51-110 41-104 (141)
126 PRK03094 hypothetical protein; 59.6 15 0.00032 24.7 3.4 47 68-114 13-76 (80)
127 KOG1149|consensus 58.2 8.6 0.00019 33.8 2.5 37 48-86 40-76 (524)
128 KOG2713|consensus 55.5 40 0.00086 28.3 5.8 23 40-64 14-36 (347)
129 TIGR00125 cyt_tran_rel cytidyl 44.1 28 0.0006 20.9 2.6 11 51-61 8-18 (66)
130 cd02156 nt_trans nucleotidyl t 40.0 21 0.00046 23.9 1.7 10 52-61 9-18 (105)
131 KOG2623|consensus 37.2 99 0.0021 27.0 5.6 56 39-99 63-124 (467)
132 PLN02907 glutamate-tRNA ligase 36.0 41 0.00089 31.0 3.4 30 81-113 462-491 (722)
133 COG4720 Predicted membrane pro 35.9 32 0.00068 26.5 2.3 24 41-64 24-47 (177)
134 PF08988 DUF1895: Protein of u 33.8 55 0.0012 21.2 2.8 27 97-123 31-57 (68)
135 COG4320 Uncharacterized protei 33.7 1.4E+02 0.0031 25.5 5.9 96 11-120 26-131 (410)
136 PRK09620 hypothetical protein; 32.8 71 0.0015 25.0 3.9 49 38-86 3-53 (229)
137 TIGR03277 methan_mark_9 putati 32.0 56 0.0012 23.2 2.8 25 91-118 29-53 (109)
138 PF04127 DFP: DNA / pantothena 30.6 34 0.00074 26.0 1.7 50 38-87 3-54 (185)
139 TIGR01510 coaD_prev_kdtB pante 30.2 96 0.0021 22.4 4.0 28 52-86 9-36 (155)
140 KOG3493|consensus 29.6 1.4E+02 0.0029 19.6 4.1 34 74-110 9-43 (73)
141 COG3286 Uncharacterized protei 29.4 1.3E+02 0.0029 23.5 4.8 24 63-86 89-112 (204)
142 PHA02031 putative DnaG-like pr 29.4 1.5E+02 0.0033 24.2 5.3 92 15-110 135-252 (266)
143 cd02165 NMNAT Nicotinamide/nic 29.0 1.2E+02 0.0026 22.5 4.4 30 52-87 9-39 (192)
144 PF02042 RWP-RK: RWP-RK domain 26.9 1E+02 0.0022 18.9 3.0 25 88-115 14-38 (52)
145 TIGR00640 acid_CoA_mut_C methy 26.2 88 0.0019 22.3 3.1 36 63-99 17-52 (132)
146 PF11697 DUF3293: Protein of u 26.1 1.5E+02 0.0031 19.1 3.9 59 56-117 11-69 (73)
147 PRK14481 dihydroxyacetone kina 25.9 2.7E+02 0.0059 23.4 6.3 59 65-126 113-190 (331)
148 PF03033 Glyco_transf_28: Glyc 25.8 89 0.0019 21.1 3.1 27 55-84 8-34 (139)
149 COG2185 Sbm Methylmalonyl-CoA 25.8 1.5E+02 0.0032 22.0 4.3 69 57-128 24-95 (143)
150 PF03698 UPF0180: Uncharacteri 25.6 66 0.0014 21.5 2.2 13 102-114 64-76 (80)
151 PRK00168 coaD phosphopantethei 25.5 73 0.0016 23.2 2.7 29 52-87 11-39 (159)
152 PF13798 PCYCGC: Protein of un 25.2 98 0.0021 23.4 3.3 35 85-119 107-148 (158)
153 TIGR02362 dhaK1b probable dihy 24.0 3.1E+02 0.0067 23.0 6.4 59 65-126 110-187 (326)
154 PF04282 DUF438: Family of unk 23.6 1.4E+02 0.003 19.5 3.4 27 95-121 36-63 (71)
155 PF13344 Hydrolase_6: Haloacid 23.6 99 0.0021 20.7 2.9 47 51-98 6-53 (101)
156 PHA02662 ORF131 putative membr 23.5 92 0.002 24.9 3.0 29 46-74 2-34 (226)
157 cd02163 PPAT Phosphopantethein 23.0 1E+02 0.0022 22.3 3.0 29 52-87 9-37 (153)
158 PF10137 TIR-like: Predicted n 22.8 1.5E+02 0.0032 21.2 3.7 44 56-100 4-48 (125)
159 PF10686 DUF2493: Protein of u 22.6 94 0.002 20.0 2.5 25 65-89 46-71 (71)
160 PRK00071 nadD nicotinic acid m 22.4 3.3E+02 0.0071 20.4 5.8 38 39-85 4-42 (203)
161 COG4008 Predicted metal-bindin 22.3 1.3E+02 0.0029 22.1 3.4 25 91-118 30-54 (153)
162 PF10979 DUF2786: Protein of u 22.2 1.8E+02 0.0038 17.0 4.4 37 91-127 2-42 (43)
163 COG3911 Predicted ATPase [Gene 22.0 2E+02 0.0044 22.1 4.5 81 37-126 81-163 (183)
164 PRK11468 dihydroxyacetone kina 21.7 3.5E+02 0.0075 23.1 6.2 59 65-126 113-190 (356)
165 PRK14679 hypothetical protein; 21.5 1.7E+02 0.0038 21.0 3.9 34 47-80 3-37 (128)
166 PF03765 CRAL_TRIO_N: CRAL/TRI 21.4 63 0.0014 19.1 1.4 13 67-79 33-45 (55)
167 cd01027 TOPRIM_RNase_M5_like T 21.2 1.2E+02 0.0027 19.7 2.9 36 61-100 34-69 (81)
168 COG2129 Predicted phosphoester 21.1 1.5E+02 0.0032 23.7 3.8 70 22-92 119-197 (226)
169 PF07082 DUF1350: Protein of u 21.1 38 0.00082 27.4 0.4 46 48-93 14-67 (250)
170 PRK04156 gltX glutamyl-tRNA sy 20.8 1.3E+02 0.0028 27.1 3.7 31 81-114 352-382 (567)
171 cd06542 GH18_EndoS-like Endo-b 20.8 3.9E+02 0.0085 20.4 7.6 27 65-91 53-79 (255)
172 PTZ00402 glutamyl-tRNA synthet 20.4 1.3E+02 0.0029 27.3 3.7 30 81-113 302-331 (601)
173 PF08373 RAP: RAP domain; Int 20.0 55 0.0012 19.4 0.9 22 65-86 20-41 (58)
No 1
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.94 E-value=4.1e-26 Score=205.46 Aligned_cols=111 Identities=25% Similarity=0.334 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
..++.-||+.|++...|.... ..++++|+++++||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 4 ~~iE~kwq~~W~~~~~f~~~~-----------~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~ 72 (842)
T TIGR00396 4 IEIEEKWQQKWKENKVFKFTD-----------DSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHP 72 (842)
T ss_pred HHHHHHHHHHHHhcCCcccCC-----------CCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceecc
Confidence 457888999999998887543 235677999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
+|||+||+|++.+|+++ |.+|.+++ +++..+++.+++||++.
T Consensus 73 ~G~D~~Glpie~~a~~~---g~~p~~~~~~~~~~~~~~~~~lG~~~ 115 (842)
T TIGR00396 73 MGWDAFGLPAENAAIKR---GIHPAKWTYENIANMKKQLQALGFSY 115 (842)
T ss_pred CCcCCCChHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999998 99999997 78999999999999985
No 2
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.4e-26 Score=197.63 Aligned_cols=88 Identities=30% Similarity=0.470 Sum_probs=84.7
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
.+++|+||+|+|||||+|||||+++++.+|+++||+|++|++|.|++|+|+||.||+.+|+++ |++|++++ ++...
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~---g~tP~el~d~~~~~ 79 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE---GITPQELVDKNHEE 79 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999 99999997 77899
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
++++|+.||||.
T Consensus 80 ~~~~~~~l~Isf 91 (558)
T COG0143 80 FKELFKALNISF 91 (558)
T ss_pred HHHHHHHhCCcc
Confidence 999999999985
No 3
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.93 E-value=2.4e-25 Score=199.69 Aligned_cols=110 Identities=25% Similarity=0.355 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
..++.-+|+.|++...|.... +.+++|+++++||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 8 ~~iE~~w~~~W~~~~~f~~~~------------~~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~ 75 (805)
T PRK00390 8 KEIEKKWQKYWEENKTFKTTE------------DSSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHP 75 (805)
T ss_pred HHHHHHHHHHHHHCCCcccCc------------cCCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCccccc
Confidence 467888899998888886432 23457999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
+|||+||+||+.+|+++ |.+|.+++ ++...+++.+++||++.
T Consensus 76 ~G~D~~Glpie~~a~~~---g~~~~~~~~~~~~~~~~~~~~lGi~~ 118 (805)
T PRK00390 76 MGWDAFGLPAENAAIKT---GTHPAEWTYENIANMKKQLKSLGFSY 118 (805)
T ss_pred CccCCCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999998 99999997 78999999999999975
No 4
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.92 E-value=5.7e-25 Score=197.99 Aligned_cols=114 Identities=24% Similarity=0.340 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
..++.-+++.|++...|.... ..++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 8 ~~iE~~~~~~W~~~~~f~~~~-----------~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~ 76 (861)
T TIGR00422 8 HEVEKKWYKKWEKSGFFKPDG-----------NSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWL 76 (861)
T ss_pred HHHHHHHHHHHHHCCCcccCc-----------ccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCC
Confidence 346677777787777776432 225678999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhc-CCCCCH-----HHHHHH--------HHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSK-DKLLSP-----LDIRKK--------GLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l-~~~~~p-----~e~~~~--------~~~~~~~~~~L~i~~ 127 (129)
+||||||+|||.++++++ ..|+++ ++|.+. ...+++.+++||++.
T Consensus 77 ~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~ 135 (861)
T TIGR00422 77 PGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASL 135 (861)
T ss_pred CCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeee
Confidence 999999999999999887 334444 555443 555678888888875
No 5
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=5.9e-25 Score=196.63 Aligned_cols=112 Identities=22% Similarity=0.331 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
..++.-+|+.|++...|+... ..++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 13 ~~~E~~~~~~W~~~~~f~~~~-----------~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~ 81 (800)
T PRK13208 13 EELEEKWQKIWEEEGTYKFDP-----------DERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFP 81 (800)
T ss_pred HHHHHHHHHHHHHCCCccccc-----------ccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCC
Confidence 356677777777777775432 224678999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcCCCCCHH------------HHH-HHHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKDKLLSPL------------DIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~~~~~p~------------e~~-~~~~~~~~~~~~L~i~~ 127 (129)
+|||+||+|||.+|++++ |.+++ +++ ++...+++++++||++.
T Consensus 82 ~G~D~~Glpie~~~ek~~--g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~ 137 (800)
T PRK13208 82 QGWDDNGLPTERKVEKYY--GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSV 137 (800)
T ss_pred CCcCCCcchHHHHHHHHh--CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeee
Confidence 999999999999999854 55544 343 56888899999999874
No 6
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.92 E-value=4.8e-25 Score=178.93 Aligned_cols=85 Identities=32% Similarity=0.478 Sum_probs=82.0
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPR 118 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~ 118 (129)
+|+|++|||||||.|||||+++++++|+++||+|++|++|.+++|+|+||+||+.+|+++ |++|++++ .+.+.|++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~---g~~~~e~~~~~~~~~~~ 77 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQELCDKYHEIFKD 77 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999 99999997 67999999
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
++++|||+.
T Consensus 78 ~l~~LgI~~ 86 (319)
T cd00814 78 LFKWLNISF 86 (319)
T ss_pred HHHHcCCcC
Confidence 999999974
No 7
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.92 E-value=1.5e-25 Score=187.24 Aligned_cols=84 Identities=30% Similarity=0.425 Sum_probs=75.5
Q ss_pred EEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHH
Q psy14678 41 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRL 119 (129)
Q Consensus 41 ~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~ 119 (129)
|+||+|+|||||.|||||+++++.+|+++||+|++|++|.|++|+|+||+||+.+|+++ |++|++++ +++++|+++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~---g~~p~~~~~~~~~~~~~~ 77 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ---GIDPEEFCDKYSAKFKEL 77 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT---TS-HHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999 99999997 789999999
Q ss_pred hhccCCcc
Q psy14678 120 EASLLVTI 127 (129)
Q Consensus 120 ~~~L~i~~ 127 (129)
+++|||+.
T Consensus 78 ~~~~~I~~ 85 (391)
T PF09334_consen 78 LEALNISY 85 (391)
T ss_dssp HHHTT---
T ss_pred HHHcCCCC
Confidence 99999985
No 8
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=9e-25 Score=198.07 Aligned_cols=115 Identities=45% Similarity=0.668 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
.++.-+|..|++...|.... +. ..++++|++++||||+||.|||||+++++++|+++||++|+|++|+|++
T Consensus 23 ~~E~~~~~~W~~~~~~~~~~--------~~-~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~ 93 (912)
T PRK05743 23 KREPEILKRWEENDLYQKIR--------EA-NKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVP 93 (912)
T ss_pred HhhHHHHHHHHHCCCccccc--------hh-cCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCC
Confidence 45666677776666664321 11 1256789999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhc---CCCCCHHHHHHHHHHH--------HHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSK---DKLLSPLDIRKKGLHL--------PRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l---~~~~~p~e~~~~~~~~--------~~~~~~L~i~~ 127 (129)
||||||+|||.+|++++ ..+++|++|.+.|++| ++.+++||++.
T Consensus 94 G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~ 148 (912)
T PRK05743 94 GWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLG 148 (912)
T ss_pred CcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999976 2367899987666655 56788888853
No 9
>PLN02224 methionine-tRNA ligase
Probab=99.92 E-value=7e-25 Score=192.15 Aligned_cols=88 Identities=27% Similarity=0.319 Sum_probs=84.6
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
.+++|+|++|||||||.|||||+++++++|+++||+|++|++|.|++|+|+||+||+.+|+++ |.+|.++| +++..
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~---g~~p~e~~~~~~~~ 143 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN---GRNPPEHCDIISQS 143 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHc---CCChHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999998 99999997 78999
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|+++++.|||+.
T Consensus 144 ~~~~~~~l~I~~ 155 (616)
T PLN02224 144 YRTLWKDLDIAY 155 (616)
T ss_pred HHHHHHHcCCCC
Confidence 999999999975
No 10
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8.9e-25 Score=195.53 Aligned_cols=110 Identities=26% Similarity=0.294 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCC-CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGK-PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
-|++=||..|++..+|+... ..+. ++|+++.+.|||||.+|+||.|+|++.|+++||+||+||+|+|+
T Consensus 9 ~IE~KWQ~~W~e~~~Fe~~~-----------d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~P 77 (814)
T COG0495 9 EIEEKWQKRWEEAKVFEADE-----------DSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHP 77 (814)
T ss_pred HHHHHHHHHHHhcCCcccCC-----------CCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeeccc
Confidence 48889999999999998644 2233 59999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
+|||..|+|++..|.+. +.+|..++ +.+..+++.+++||.|+
T Consensus 78 MGwdafGlPae~~A~~~---~~~P~~wt~~ni~~~k~qlk~lG~si 120 (814)
T COG0495 78 MGWDAFGLPAENAAIKI---GTDPAKWTYYNIAYMKKQLKSLGFSI 120 (814)
T ss_pred CcccccCchHHHHHHHh---CCChHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999 99999997 67999999999999986
No 11
>PLN02563 aminoacyl-tRNA ligase
Probab=99.92 E-value=1.2e-24 Score=198.05 Aligned_cols=112 Identities=28% Similarity=0.313 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCc-CCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~-lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
.|+.-||..|++...|.... +. ..++++|+++++||||||. |||||+++++++|+++||+||+|++|+|+
T Consensus 84 ~iE~kwq~~W~e~~~f~~~~--------~~-~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~ 154 (963)
T PLN02563 84 EIEPKWQRYWEENRTFRTPD--------DV-DTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHP 154 (963)
T ss_pred HHHHHHHHHHHhCCCccccc--------cc-cCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeeccc
Confidence 47778888888888776431 00 1256789999999999997 99999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
+|||+||+|++.+|.++ |.+|.+++ ++...+++.+++||++.
T Consensus 155 ~G~D~~GlPiE~~a~~~---g~~p~~~~~~~i~~~~~q~~~lG~s~ 197 (963)
T PLN02563 155 MGWDAFGLPAEQYAIET---GTHPKITTLKNIARFRSQLKSLGFSY 197 (963)
T ss_pred ccccccCcHHHHHHHHc---CCChHHhHHHHHHHHHHHHHHhCcEe
Confidence 99999999999999988 99999996 78999999999999875
No 12
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.91 E-value=1.8e-24 Score=194.65 Aligned_cols=116 Identities=40% Similarity=0.577 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
..++.-+|+.|++...|+... +.+ .++++|++++|||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 9 ~~~E~~~~~~W~~~~~f~~~~--------~~~-~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~ 79 (861)
T TIGR00392 9 SKREEKILAFWQENDIFEKVK--------KLN-KGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRK 79 (861)
T ss_pred hHhhHHHHHHHHHCCchhhhh--------hcc-CCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 456777888888888776321 111 25678999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcC-C---CCCH---HHHHH--------HHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKD-K---LLSP---LDIRK--------KGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~-~---~~~p---~e~~~--------~~~~~~~~~~~L~i~~ 127 (129)
+|||+||+|||.+|++++. . ..++ ++|.+ ....+++.+++||++.
T Consensus 80 ~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~ 139 (861)
T TIGR00392 80 PGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWG 139 (861)
T ss_pred CCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 9999999999999998862 1 1123 34444 3555578888888864
No 13
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.91 E-value=2.3e-24 Score=196.30 Aligned_cols=115 Identities=42% Similarity=0.666 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
.++.-+|..|++...|+... +...++++|++++||||+||.|||||+++++++|+++||++|+|++|.|++
T Consensus 28 ~~E~~~~~~W~~~~~y~~~~---------~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~p 98 (961)
T PRK13804 28 QKEPEIQARWEEIDLYKKLR---------EQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVP 98 (961)
T ss_pred HhHHHHHHHHHHCCCccccc---------cccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 45556666666666554321 101256789999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhc-C-----CCCCHHHHHHHHHHH--------HHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSK-D-----KLLSPLDIRKKGLHL--------PRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l-~-----~~~~p~e~~~~~~~~--------~~~~~~L~i~~ 127 (129)
||||||+|||.++++++ . ..+++++|.+.|++| ++.+++||++.
T Consensus 99 GwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~ 156 (961)
T PRK13804 99 GWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLG 156 (961)
T ss_pred CcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 99999999999999886 1 124778887776665 56778888764
No 14
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=1.4e-24 Score=180.51 Aligned_cols=89 Identities=25% Similarity=0.442 Sum_probs=79.8
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhc-C-----CCCCHHHH---
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK-D-----KLLSPLDI--- 109 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l-~-----~~~~p~e~--- 109 (129)
++|+|++|||||||.|||||+++++++|+++||+||+|++|.|++|+|+||+||+..|++++ . .+++|++|
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999876 1 25777764
Q ss_pred ----H-HHHHHHHHHhhccCCcc
Q psy14678 110 ----R-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 110 ----~-~~~~~~~~~~~~L~i~~ 127 (129)
+ +++++|++++++|||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~ 103 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASV 103 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCcee
Confidence 3 46788899999999974
No 15
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.91 E-value=2.6e-24 Score=196.21 Aligned_cols=115 Identities=49% Similarity=0.772 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
...+.-+++.|.+...|+... + .+.+++|++++|||||||.|||||+++.+++|+++||++|+|++|.|+
T Consensus 6 ~~~E~~~~~~W~~~~~y~~~~---------~-~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~ 75 (974)
T PLN02843 6 VTREPEIQKLWEENQVYKRVS---------D-RNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYV 75 (974)
T ss_pred HHhhHHHHHHHHHCCCccccc---------c-ccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccC
Confidence 345666777777777665422 0 124577999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcC----CCCCHHHHHHHHHHHHH--------HhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKD----KLLSPLDIRKKGLHLPR--------LEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~----~~~~p~e~~~~~~~~~~--------~~~~L~i~~ 127 (129)
+||||||+|||.++++++. .+++|++|.+.|++|++ .+++||++.
T Consensus 76 pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~ 132 (974)
T PLN02843 76 PGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWG 132 (974)
T ss_pred CccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 9999999999999988762 35789999777776665 557888753
No 16
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.91 E-value=1.2e-24 Score=175.74 Aligned_cols=85 Identities=36% Similarity=0.621 Sum_probs=80.4
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCC-------------CH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLL-------------SP 106 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~-------------~p 106 (129)
+|+|++|||||||.+||||+++++++|+++||++++|++|.|++|+|+||+||+.+|+++ +. ++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~---~~~~~~~~~~~~~~~~~ 77 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK---GGRKKKTIWIEEFREDP 77 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh---cCcccccccHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999998 55 78
Q ss_pred HHHH-HHHHHHHHHhhccCCcc
Q psy14678 107 LDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 107 ~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
++++ ++..+|++++++|||+.
T Consensus 78 ~~~~~~~~~~~~~~l~~lgI~~ 99 (312)
T cd00668 78 KEFVEEMSGEHKEDFRRLGISY 99 (312)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 8886 77999999999999975
No 17
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=1.1e-24 Score=187.42 Aligned_cols=87 Identities=30% Similarity=0.427 Sum_probs=83.5
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHH-HHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNK-ILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~-v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
+++|+|++|||||||.|||||++++ +.+|+++||+|++|++|.|++|+|+||+||+.+|+++ |++|++++ ++++.
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~---g~~~~~~~~~~~~~ 78 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTPQELADKYHEE 78 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 4679999999999999999999997 9999999999999999999999999999999999999 99999997 78999
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|.+++++|||+.
T Consensus 79 ~~~~~~~l~i~~ 90 (556)
T PRK12268 79 HKEDFKKLGISY 90 (556)
T ss_pred HHHHHHHcCCcC
Confidence 999999999974
No 18
>PLN02381 valyl-tRNA synthetase
Probab=99.91 E-value=2.9e-24 Score=197.27 Aligned_cols=91 Identities=22% Similarity=0.384 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhc--CCC-----CCHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK--DKL-----LSPLDI 109 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l--~~~-----~~p~e~ 109 (129)
++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|++.+++++| ..| +++++|
T Consensus 126 ~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f 205 (1066)
T PLN02381 126 SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEF 205 (1066)
T ss_pred CCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHH
Confidence 4677999999999999999999999999999999999999999999999999999999999876 123 466777
Q ss_pred HHHHHHH--------HHHhhccCCcc
Q psy14678 110 RKKGLHL--------PRLEASLLVTI 127 (129)
Q Consensus 110 ~~~~~~~--------~~~~~~L~i~~ 127 (129)
++.|++| .+.+++||++.
T Consensus 206 ~~~~~~~~~~~~~~~~~q~~~lG~s~ 231 (1066)
T PLN02381 206 VSEVWKWKDEYGGTILNQLRRLGASL 231 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 6655554 46677787764
No 19
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=3e-24 Score=195.68 Aligned_cols=115 Identities=28% Similarity=0.468 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
.++.-+|+.|++...|.... +. ..++++|++++|||||||.||+||+++++++|+++||++|+|++|+|++
T Consensus 15 ~iE~~~~~~W~~~~~f~~~~--------~~-~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~ 85 (975)
T PRK06039 15 ALEEEVLKFWKENDIFEKSI--------EN-REGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRA 85 (975)
T ss_pred HHHHHHHHHHHHCCCcccCc--------cc-cCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcC
Confidence 46667777777777775432 00 1256889999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhcC-C------CCCHHHHHHH--------HHHHHHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSKD-K------LLSPLDIRKK--------GLHLPRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l~-~------~~~p~e~~~~--------~~~~~~~~~~L~i~~ 127 (129)
||||||+|||.+|++++. + .+++++|.+. ...+++.+++||+++
T Consensus 86 GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~ 144 (975)
T PRK06039 86 GWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWV 144 (975)
T ss_pred CcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 999999999999999762 1 2456666544 455566777888764
No 20
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.91 E-value=1.4e-24 Score=189.23 Aligned_cols=110 Identities=42% Similarity=0.660 Sum_probs=81.9
Q ss_pred HHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcC
Q psy14678 9 LQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH 88 (129)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~ 88 (129)
+|+.|++...|+. +.+...++++|++++||||+||.||+||+++++++|+++||++|+|++|+|++|||||
T Consensus 2 ~~~~W~~~~~~~~---------~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~ 72 (601)
T PF00133_consen 2 WQKFWEENKLFEK---------QLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCH 72 (601)
T ss_dssp HHHHHHHTTCCHH---------HHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--
T ss_pred HhHHHhhCCCccc---------ccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCC
Confidence 4666776666643 2222236789999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhcC-------CCCCHHHHHHHHHH--------HHHHhhccCCcc
Q psy14678 89 GLPIELKAITSKD-------KLLSPLDIRKKGLH--------LPRLEASLLVTI 127 (129)
Q Consensus 89 G~ki~~~a~k~l~-------~~~~p~e~~~~~~~--------~~~~~~~L~i~~ 127 (129)
|+|||.++++++. ..+++++|.+.|++ +++.+++||++.
T Consensus 73 Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 126 (601)
T PF00133_consen 73 GLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSI 126 (601)
T ss_dssp SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--S
T ss_pred CcchhhhHHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeec
Confidence 9999999999872 35678887655544 456777888764
No 21
>PLN02943 aminoacyl-tRNA ligase
Probab=99.91 E-value=2.9e-24 Score=195.58 Aligned_cols=104 Identities=24% Similarity=0.399 Sum_probs=84.5
Q ss_pred hhhhH-HHHHHh------cCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHH
Q psy14678 24 FSELY-SWQREA------LNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96 (129)
Q Consensus 24 ~~~~~-~w~~~~------~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a 96 (129)
|..++ .|.+++ .+++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+|+|.++
T Consensus 66 E~~~~~~W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~v 145 (958)
T PLN02943 66 EERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVV 145 (958)
T ss_pred hHHHHHHHHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHH
Confidence 67777 454443 12467799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCC-----CCHHHHHHHH--------HHHHHHhhccCCcc
Q psy14678 97 ITSK-DKL-----LSPLDIRKKG--------LHLPRLEASLLVTI 127 (129)
Q Consensus 97 ~k~l-~~~-----~~p~e~~~~~--------~~~~~~~~~L~i~~ 127 (129)
++++ ..| .++++|.+.| ..+.+.+++||++.
T Consensus 146 ek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~ 190 (958)
T PLN02943 146 EKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASC 190 (958)
T ss_pred HHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcce
Confidence 9887 223 4566776544 45556678888764
No 22
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=3.1e-24 Score=193.65 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
.++.=+++.|.+...|.... +.+++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++
T Consensus 13 ~~E~~~~~~W~~~~~f~~~~------------~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~ 80 (874)
T PRK05729 13 EVEAKWYQKWEEKGYFKPDD------------NSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLP 80 (874)
T ss_pred HHHHHHHHHHHHCCCcccCc------------CCCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 34555555565555554321 245669999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhc-CCCCC-----HHHHHH--------HHHHHHHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSK-DKLLS-----PLDIRK--------KGLHLPRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l-~~~~~-----p~e~~~--------~~~~~~~~~~~L~i~~ 127 (129)
||||||+|+|.++++++ ..|++ +++|.+ +...+++.+++||++.
T Consensus 81 G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~ 138 (874)
T PRK05729 81 GTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASC 138 (874)
T ss_pred CCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcce
Confidence 99999999999998876 23554 445544 3566677788888775
No 23
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=3e-24 Score=174.21 Aligned_cols=85 Identities=27% Similarity=0.349 Sum_probs=82.1
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPR 118 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~ 118 (129)
+|+|++|||||||.+||||+++++.+|+++||++++|++|.|++|+|+||+||+.+|+++ |++|++++ ++.++|++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~---g~~~~e~~~~~~~~~~~ 77 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI---GRDPEDWTEYNIKKMKE 77 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999998 99999997 77999999
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
++++|||+.
T Consensus 78 ~~~~lgi~~ 86 (314)
T cd00812 78 QLKRMGFSY 86 (314)
T ss_pred HHHHhccce
Confidence 999999974
No 24
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.91 E-value=6.9e-24 Score=196.37 Aligned_cols=91 Identities=34% Similarity=0.529 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcC---C----CCCHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD---K----LLSPLDI 109 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~---~----~~~p~e~ 109 (129)
++++|++++|||||||.||+||+++++++|+++||+||+|++|.|++||||||+|||.+++++|. + .+++++|
T Consensus 100 ~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f 179 (1205)
T PTZ00427 100 NKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVY 179 (1205)
T ss_pred CCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHH
Confidence 45779999999999999999999999999999999999999999999999999999999999872 1 2578888
Q ss_pred HHHHHHH--------HHHhhccCCcc
Q psy14678 110 RKKGLHL--------PRLEASLLVTI 127 (129)
Q Consensus 110 ~~~~~~~--------~~~~~~L~i~~ 127 (129)
.+.|++| ++.+++||+++
T Consensus 180 ~e~c~~~~~~~~~~~~~~~~rlG~~i 205 (1205)
T PTZ00427 180 NEKCRGIVLKYSNEWVKTVERIGRWI 205 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 6666555 77777888664
No 25
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=3.1e-24 Score=175.90 Aligned_cols=89 Identities=48% Similarity=0.770 Sum_probs=78.2
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcC-------CCCCH-----
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD-------KLLSP----- 106 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~-------~~~~p----- 106 (129)
++|+|.+|||||||.|||||+++++++|+++||++++|++|.|++|+|+||+||+.+|++++. ...++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999999751 12234
Q ss_pred --HHHH-HHHHHHHHHhhccCCcc
Q psy14678 107 --LDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 107 --~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
++++ ++..+|.+.+++|||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~ 104 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWV 104 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcee
Confidence 4664 56888999999999954
No 26
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=4.2e-24 Score=188.32 Aligned_cols=86 Identities=31% Similarity=0.439 Sum_probs=83.3
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLP 117 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~ 117 (129)
++|+|++|||||||.|||||+++++.+|+++||+|++|++|.|++|+|+||+||+.+|+++ |++|++++ +++.+|+
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~---g~~p~e~~~~~~~~~~ 78 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPEELIARYHAEHK 78 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999 99999997 7899999
Q ss_pred HHhhccCCcc
Q psy14678 118 RLEASLLVTI 127 (129)
Q Consensus 118 ~~~~~L~i~~ 127 (129)
+++++|||+.
T Consensus 79 ~~~~~l~i~~ 88 (673)
T PRK00133 79 RDFAGFGISF 88 (673)
T ss_pred HHHHHhCCCC
Confidence 9999999975
No 27
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.90 E-value=5.6e-24 Score=190.91 Aligned_cols=88 Identities=25% Similarity=0.372 Sum_probs=83.8
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHH-HHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVN-KILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGL 114 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~-~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~ 114 (129)
++++|+||+|+|||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+.+|+++ |.+|+|++ +++.
T Consensus 15 ~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~---g~~p~e~~d~~~~ 91 (801)
T PLN02610 15 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEE---NCTPKEICDKYHA 91 (801)
T ss_pred CCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 5678999999999999999999997 67799999999999999999999999999999999999 99999997 7899
Q ss_pred HHHHHhhccCCcc
Q psy14678 115 HLPRLEASLLVTI 127 (129)
Q Consensus 115 ~~~~~~~~L~i~~ 127 (129)
.|+++++.|||+.
T Consensus 92 ~~~~~~~~l~i~~ 104 (801)
T PLN02610 92 IHKEVYDWFDISF 104 (801)
T ss_pred HHHHHHHHcCCcc
Confidence 9999999999985
No 28
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=6.3e-24 Score=186.28 Aligned_cols=87 Identities=31% Similarity=0.399 Sum_probs=83.7
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHH
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHL 116 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~ 116 (129)
+++|+|++|+|||||.|||||+++++.+|+++||+|++|++|.|++|+|+||+||+.+|+++ |++|++++ ++...|
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~---g~~~~e~~d~~~~~f 79 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKA---GKTPQEYVDEISAGF 79 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999 99999997 789999
Q ss_pred HHHhhccCCcc
Q psy14678 117 PRLEASLLVTI 127 (129)
Q Consensus 117 ~~~~~~L~i~~ 127 (129)
++++++|||+.
T Consensus 80 k~~l~~lgI~~ 90 (648)
T PRK12267 80 KELWKKLDISY 90 (648)
T ss_pred HHHHHHcCCCC
Confidence 99999999975
No 29
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.90 E-value=1.8e-23 Score=191.92 Aligned_cols=114 Identities=17% Similarity=0.265 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
.++.-||+.|.+...|.... . ..++++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++
T Consensus 23 ~iE~~~~~~W~~~~~f~~~~---------~-~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~ 92 (1052)
T PRK14900 23 EVEARWYPFWQERGYFHGDE---------H-DRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLP 92 (1052)
T ss_pred HHHHHHHHHHHHCCCccCCc---------c-cCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCC
Confidence 45666677776666664321 0 1246789999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhcC-------CCCCHHHHHHHH--------HHHHHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSKD-------KLLSPLDIRKKG--------LHLPRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l~-------~~~~p~e~~~~~--------~~~~~~~~~L~i~~ 127 (129)
||||||+|++.++++++. ..+++++|.+.| ..+.+.+++||++.
T Consensus 93 G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~ 151 (1052)
T PRK14900 93 GTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASL 151 (1052)
T ss_pred CCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchhe
Confidence 999999999999988761 245667776655 45566677888765
No 30
>PLN02882 aminoacyl-tRNA ligase
Probab=99.90 E-value=2.7e-23 Score=192.07 Aligned_cols=115 Identities=28% Similarity=0.479 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
.++.-+++.|++...|.... +. ..++++|++++||||+||.||+||+++++++|+++||++|+|++|.|++
T Consensus 12 ~~E~~~~~~W~e~~~f~~~~--------~~-~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~ 82 (1159)
T PLN02882 12 KQEEKILSLWSEIDAFKTQL--------KR-TEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRF 82 (1159)
T ss_pred HHHHHHHHHHHhCCCccccc--------cc-cCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccC
Confidence 34555666666666665431 00 1256779999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhcC---C----CCCHHHHHHH--------HHHHHHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSKD---K----LLSPLDIRKK--------GLHLPRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l~---~----~~~p~e~~~~--------~~~~~~~~~~L~i~~ 127 (129)
||||||+|||.+++++++ + .+++++|.+. ...+++.+++||+++
T Consensus 83 GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~ 141 (1159)
T PLN02882 83 GWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWI 141 (1159)
T ss_pred ccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 999999999999998872 1 2567777554 445567777888654
No 31
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=1.7e-23 Score=177.77 Aligned_cols=86 Identities=31% Similarity=0.495 Sum_probs=82.8
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLP 117 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~ 117 (129)
++|+|++|||||||.+||||+++++.+|+++||++++|++|.|++|+|+||+||+.+|+++ |++|.+++ .++.+|+
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~---g~~~~~~~~~~~~~~~ 77 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA---GISPQELADRNSAAFK 77 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999998 99999997 7899999
Q ss_pred HHhhccCCcc
Q psy14678 118 RLEASLLVTI 127 (129)
Q Consensus 118 ~~~~~L~i~~ 127 (129)
+++++|||+.
T Consensus 78 ~~l~~l~I~~ 87 (511)
T PRK11893 78 RLWEALNISY 87 (511)
T ss_pred HHHHHhCCCc
Confidence 9999999974
No 32
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.90 E-value=2e-23 Score=162.24 Aligned_cols=86 Identities=21% Similarity=0.065 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
++.++++|.|.| ||.|||||+++++.+|+++||+|++|++|.|++|+|+||+||+.+|+++ |++|+|++ ++++.
T Consensus 19 ~~~~~y~~gpt~--y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~---g~~p~e~~~~~~~~ 93 (213)
T cd00672 19 GLVTMYVCGPTV--YDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREE---GLSWKEVADYYTKE 93 (213)
T ss_pred CCceEEEeCCcc--CCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 556788777665 5789999999999999999999999999999999999999999999999 99999997 78999
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|++++++|||+.
T Consensus 94 f~~~~~~l~i~~ 105 (213)
T cd00672 94 FFEDMKALNVLP 105 (213)
T ss_pred HHHHHHHcCCCC
Confidence 999999999985
No 33
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.90 E-value=1.9e-23 Score=189.88 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCC
Q psy14678 5 ISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84 (129)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G 84 (129)
++.-+|..|++...|+... +++++|++++||||+||.|||||+++++++|+++||+||+|++|+|++|
T Consensus 3 iE~k~~~~W~~~~~fe~~~------------~~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G 70 (938)
T TIGR00395 3 IEKKWQKRWEEAHIFEADP------------DDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLG 70 (938)
T ss_pred HHHHHHHHHHhCCCcccCC------------CCCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCc
Confidence 6778899999999887532 2567899999999999999999999999999999999999999999999
Q ss_pred CCcCCchHHHHHHHhc-C-----------CCCCHHHHH----------HHHHHHHHHhhccCCcc
Q psy14678 85 WDCHGLPIELKAITSK-D-----------KLLSPLDIR----------KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 85 ~D~~G~ki~~~a~k~l-~-----------~~~~p~e~~----------~~~~~~~~~~~~L~i~~ 127 (129)
||+||+||+..|++.. + .++++++|. .....+++.+++||+++
T Consensus 71 ~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~ 135 (938)
T TIGR00395 71 FHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSI 135 (938)
T ss_pred cCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceE
Confidence 9999999999998842 0 133444443 34567888999999886
No 34
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.90 E-value=1.5e-23 Score=179.62 Aligned_cols=84 Identities=37% Similarity=0.509 Sum_probs=81.2
Q ss_pred EEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHH
Q psy14678 41 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRL 119 (129)
Q Consensus 41 ~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~ 119 (129)
|+|++|||||||.|||||+++++.+|+++||+|++|++|.|++|+|+||+||+.+|+++ |++|++++ .+.+.|+++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~---g~~~~e~~~~~~~~~~~~ 77 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPKELVDKYHEEFKDD 77 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999 99999997 779999999
Q ss_pred hhccCCcc
Q psy14678 120 EASLLVTI 127 (129)
Q Consensus 120 ~~~L~i~~ 127 (129)
+++|||+.
T Consensus 78 l~~LgI~~ 85 (530)
T TIGR00398 78 WKWLNISF 85 (530)
T ss_pred HHHhCCCC
Confidence 99999974
No 35
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.89 E-value=3.1e-23 Score=189.33 Aligned_cols=91 Identities=24% Similarity=0.393 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhc--CCC-----CCHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK--DKL-----LSPLDI 109 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l--~~~-----~~p~e~ 109 (129)
++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||++++.++++++ ..| +++++|
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f 137 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEF 137 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999988876 223 455666
Q ss_pred HHH--------HHHHHHHhhccCCcc
Q psy14678 110 RKK--------GLHLPRLEASLLVTI 127 (129)
Q Consensus 110 ~~~--------~~~~~~~~~~L~i~~ 127 (129)
.+. ...+++.+++||++.
T Consensus 138 ~~~~~~w~~~~~~~~~~~~~~lG~~~ 163 (995)
T PTZ00419 138 LKKVWEWKDKHGNNICNQLRRLGSSL 163 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 544 455566778888764
No 36
>PLN02959 aminoacyl-tRNA ligase
Probab=99.89 E-value=4.3e-23 Score=189.83 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEE
Q psy14678 2 LEYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHY 81 (129)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~ 81 (129)
|..++.-+|..|++...|+... + ......+++|+++.||||+||.|||||+++++++|+++||+||+|++|+|
T Consensus 15 l~~iE~k~q~~W~~~~~fe~~~-~------~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 15 LLEIEVAVQKWWEEEKVFEAEA-G------DEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred HHHHHHHHHHHHHhcCCcccCc-c------cccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 3467888999999998887542 0 00011347799999999999999999999999999999999999999999
Q ss_pred eCCCCcCCchHHHHHHHh
Q psy14678 82 VPGWDCHGLPIELKAITS 99 (129)
Q Consensus 82 ~~G~D~~G~ki~~~a~k~ 99 (129)
++||||||+||+.+|++.
T Consensus 88 p~G~d~tGlPIe~~aek~ 105 (1084)
T PLN02959 88 PFAFHCTGMPIKASADKL 105 (1084)
T ss_pred CCCcCCCCccHHHHHHHH
Confidence 999999999999999874
No 37
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.8e-23 Score=184.89 Aligned_cols=106 Identities=26% Similarity=0.397 Sum_probs=87.2
Q ss_pred cchhhhH-HHHHHh-----cCCC-CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHH
Q psy14678 22 CGFSELY-SWQREA-----LNGK-PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIEL 94 (129)
Q Consensus 22 ~~~~~~~-~w~~~~-----~~~~-~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~ 94 (129)
..+..+| .|.+++ .+.. ++|+|.+|||||+|.||||||++.++.|+++||+||+||+|+|++|+||+|+++|.
T Consensus 9 ~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~ 88 (877)
T COG0525 9 EIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQV 88 (877)
T ss_pred hhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHH
Confidence 3355666 454444 1233 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-C-----CCCCHHHHHHHHHHHHH--------HhhccCCcc
Q psy14678 95 KAITSK-D-----KLLSPLDIRKKGLHLPR--------LEASLLVTI 127 (129)
Q Consensus 95 ~a~k~l-~-----~~~~p~e~~~~~~~~~~--------~~~~L~i~~ 127 (129)
++++++ . ..+++++|.+.|++|++ .+++||+|.
T Consensus 89 ~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~ 135 (877)
T COG0525 89 VVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSV 135 (877)
T ss_pred HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999998 1 34578888887777654 567777764
No 38
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.7e-23 Score=186.25 Aligned_cols=91 Identities=54% Similarity=0.901 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcC------CCCCHHHH
Q psy14678 36 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD------KLLSPLDI 109 (129)
Q Consensus 36 ~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~------~~~~p~e~ 109 (129)
.+++.|++.++|||+||.+|||||.+.+++|++.||+.|+||+|.+++||||||+|||.+++++++ ..++.++|
T Consensus 46 ~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~ef 125 (933)
T COG0060 46 KGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEF 125 (933)
T ss_pred CCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999983 23567788
Q ss_pred HHHHHHHH--------HHhhccCCc
Q psy14678 110 RKKGLHLP--------RLEASLLVT 126 (129)
Q Consensus 110 ~~~~~~~~--------~~~~~L~i~ 126 (129)
.+.|++|+ +.++.||+.
T Consensus 126 r~~Cr~~a~~~v~~q~~~f~RLGv~ 150 (933)
T COG0060 126 REKCREFALEQVDEQKEQFKRLGVW 150 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheEe
Confidence 77776664 455556553
No 39
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.83 E-value=1.3e-20 Score=158.70 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLP 117 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~ 117 (129)
=++++|.|.| ++.+||||+|++|.+|+++||+++.|++|.|++|+|+||+||+.+|+++ |++|+|++ ++..+|.
T Consensus 37 v~~YvCGpTv--Y~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~---g~t~~ela~~y~~~f~ 111 (411)
T TIGR03447 37 AGMYVCGITP--YDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERD---GVDWRELGTSQIDLFR 111 (411)
T ss_pred ceEEEeCCcc--CCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4566777555 5999999999999999999999999999999999999999999999999 99999997 7899999
Q ss_pred HHhhccCCc
Q psy14678 118 RLEASLLVT 126 (129)
Q Consensus 118 ~~~~~L~i~ 126 (129)
++++.|||+
T Consensus 112 ~d~~~Lni~ 120 (411)
T TIGR03447 112 EDMEALRVL 120 (411)
T ss_pred HHHHHcCCC
Confidence 999999987
No 40
>KOG0435|consensus
Probab=99.82 E-value=1.3e-20 Score=165.25 Aligned_cols=108 Identities=26% Similarity=0.310 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCC
Q psy14678 5 ISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84 (129)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G 84 (129)
|+.-|+..|+.+-.|.... ..++++ ||.+..|||+|.|||||+|.|++.|+++||+||+||+|.+++|
T Consensus 35 iEk~W~~~~~~~~~~~~~~-----------d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMG 102 (876)
T KOG0435|consen 35 IEKHWKQYLKDGFPFSKDS-----------DKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMG 102 (876)
T ss_pred HHHHHHHHHhcCCcccccc-----------ccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCc
Confidence 3444555555554443221 235666 8889999999999999999999999999999999999999999
Q ss_pred CCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 85 WDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 85 ~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
||..|+|.|.+|.+. |++|.... +.+.++++.+.+|+++.
T Consensus 103 WDaFGLPAENAAier---gv~P~sWT~~NI~~Mk~Ql~~lg~~F 143 (876)
T KOG0435|consen 103 WDAFGLPAENAAIER---GVHPASWTINNIAKMKQQLKSLGISF 143 (876)
T ss_pred ccccCCchhhHHHhc---CCCchhhhHHHHHHHHHHHHHcCccc
Confidence 999999999999999 99999996 88999999999999975
No 41
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.82 E-value=3.7e-20 Score=154.87 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=76.2
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPR 118 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~ 118 (129)
++++|.| ||++.+||||+|++|.+|++.||+++.|++|.|++|+|+||+||+.+|+++ |++|++++ ++...|.+
T Consensus 11 ~~YvCGp--TvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~---G~~~~e~a~~~~~~f~~ 85 (384)
T PRK12418 11 TMYVCGI--TPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARD---GVDWRDLAEREIALFRE 85 (384)
T ss_pred EEEecCC--CCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 5666665 555999999999999999999999999999999999999999999999999 99999997 78999999
Q ss_pred HhhccCCc
Q psy14678 119 LEASLLVT 126 (129)
Q Consensus 119 ~~~~L~i~ 126 (129)
+++.|||.
T Consensus 86 d~~~Lni~ 93 (384)
T PRK12418 86 DMEALRVL 93 (384)
T ss_pred HHHHhCCC
Confidence 99999984
No 42
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.81 E-value=6.8e-20 Score=156.19 Aligned_cols=86 Identities=22% Similarity=0.091 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
++-++|+|.| ||||.+||||+++++.+|+++||++++|++|.|++|+|++|+||+.+|+++ |++|++++ .+...
T Consensus 20 ~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~---g~~~~e~a~~~~~~ 94 (465)
T TIGR00435 20 GKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN---GESVYEVSERFIEA 94 (465)
T ss_pred CcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 4455666664 788999999999999999999999999999999999999999999999999 99999997 78999
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|.++++.|||+.
T Consensus 95 f~~dl~~LgI~~ 106 (465)
T TIGR00435 95 YFEDMKALNVLP 106 (465)
T ss_pred HHHHHHHhCCCC
Confidence 999999999984
No 43
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.81 E-value=1.2e-19 Score=154.54 Aligned_cols=85 Identities=22% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
+..++++|. |||||.+||||+++++.+|+++||++++|++|.|++|+|++|+||+.+|+++ |.+|++++ .+...
T Consensus 22 ~~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~---g~~~~e~~~~~~~~ 96 (463)
T PRK00260 22 GKVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEE---GESIKELTERYIAA 96 (463)
T ss_pred CcceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 344566665 5678999999999999999999999999999999999999999999999999 99999997 78999
Q ss_pred HHHHhhccCCc
Q psy14678 116 LPRLEASLLVT 126 (129)
Q Consensus 116 ~~~~~~~L~i~ 126 (129)
|.++++.|||+
T Consensus 97 f~~~~~~Lgi~ 107 (463)
T PRK00260 97 FHEDMDALNVL 107 (463)
T ss_pred HHHHHHHcCCC
Confidence 99999999994
No 44
>KOG0432|consensus
Probab=99.80 E-value=1.4e-19 Score=161.66 Aligned_cols=99 Identities=25% Similarity=0.348 Sum_probs=87.4
Q ss_pred cchhhhHHHHHHh--------cCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHH
Q psy14678 22 CGFSELYSWQREA--------LNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIE 93 (129)
Q Consensus 22 ~~~~~~~~w~~~~--------~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~ 93 (129)
..++.+|.|++.. .+.+..|+++.|||||+|.+|||||.+..+.|.++||+||.|++|.|++|+||+|+.+|
T Consensus 50 ~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ 129 (995)
T KOG0432|consen 50 YVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQ 129 (995)
T ss_pred chHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHH
Confidence 5678899988876 12478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-------CCCCCHHHHHHHHHHHHHHh
Q psy14678 94 LKAITSK-------DKLLSPLDIRKKGLHLPRLE 120 (129)
Q Consensus 94 ~~a~k~l-------~~~~~p~e~~~~~~~~~~~~ 120 (129)
..++|.| +..+++++|.+.+++|++..
T Consensus 130 ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~ 163 (995)
T KOG0432|consen 130 VVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEY 163 (995)
T ss_pred HHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHh
Confidence 9999998 14567889988888877643
No 45
>KOG0436|consensus
Probab=99.80 E-value=1.1e-19 Score=153.28 Aligned_cols=87 Identities=29% Similarity=0.417 Sum_probs=83.8
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
++++|++++|..|||..|||||+++.+++|+++||++++|..|.|.+|+|+||+||+.+|+.+ |.+|.|+| ..+.+
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn---G~~P~e~cDr~s~~ 113 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN---GRNPPELCDRISQS 113 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc---CCChHHHHhhhhHH
Confidence 457999999999999999999999999999999999999999999999999999999999999 99999998 67999
Q ss_pred HHHHhhccCCc
Q psy14678 116 LPRLEASLLVT 126 (129)
Q Consensus 116 ~~~~~~~L~i~ 126 (129)
|+.++..+||.
T Consensus 114 f~qL~k~~gi~ 124 (578)
T KOG0436|consen 114 FRQLWKDAGIA 124 (578)
T ss_pred HHHHHHHhCcc
Confidence 99999999986
No 46
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.79 E-value=2.7e-19 Score=157.84 Aligned_cols=83 Identities=24% Similarity=0.141 Sum_probs=77.2
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHH-hcCCceEEeCCCCcCCchHHHHHHHhcCCCCC-HHHHH-HHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNL-LQGKRVHYVPGWDCHGLPIELKAITSKDKLLS-PLDIR-KKGLHL 116 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~-~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~-p~e~~-~~~~~~ 116 (129)
.+|+|+ ||||+.+||||+|++|.+|++.||++ +.||+|.|++|+||||+||+.+|+++ |++ +.+++ .+...|
T Consensus 62 ~~Y~CG--PTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~---g~~~~~el~~~~~~~f 136 (651)
T PTZ00399 62 RWYTCG--PTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREE---KLSIFLELARKWEKEF 136 (651)
T ss_pred EEEEeC--CCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHh---CCCcHHHHHHHHHHHH
Confidence 566776 55569999999999999999999999 99999999999999999999999999 999 99997 789999
Q ss_pred HHHhhccCCcc
Q psy14678 117 PRLEASLLVTI 127 (129)
Q Consensus 117 ~~~~~~L~i~~ 127 (129)
.++|++|||+.
T Consensus 137 ~~d~~~Lni~~ 147 (651)
T PTZ00399 137 FEDMKALNVRP 147 (651)
T ss_pred HHHHHHcCCCC
Confidence 99999999975
No 47
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.79 E-value=3.3e-19 Score=137.53 Aligned_cols=84 Identities=18% Similarity=0.054 Sum_probs=78.0
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPR 118 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~ 118 (129)
+.+|..++|||||+|||||+|+.+++|+++|++++.|++|.++.++||+|++|...|++. ..+++++ .....|.+
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~----~~~~~~~~~~~~~~~~ 76 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL----EKWRKLVEESIKADLE 76 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999999999999999876 4488997 67999999
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
+++.|||++
T Consensus 77 ~~~~L~i~~ 85 (212)
T cd00671 77 TYGRLDVRF 85 (212)
T ss_pred HHHHhCCcC
Confidence 999999975
No 48
>PLN02946 cysteine-tRNA ligase
Probab=99.78 E-value=7.6e-19 Score=152.66 Aligned_cols=83 Identities=20% Similarity=0.099 Sum_probs=77.8
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPR 118 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~ 118 (129)
..|+|. |||++.+||||+|++|.+|++.||+++.|++|.|++|+||||+||+.+|+++ |++|+|++ +++..|.+
T Consensus 82 ~~Y~CG--pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~---g~~~~ela~~y~~~f~~ 156 (557)
T PLN02946 82 GMYVCG--VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANEL---GEDPISLSRRYCEEFLS 156 (557)
T ss_pred eEEEeC--CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 455554 8899999999999999999999999999999999999999999999999999 99999997 78999999
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
++++|||+.
T Consensus 157 d~~~LnI~~ 165 (557)
T PLN02946 157 DMAYLHCLP 165 (557)
T ss_pred HHHHCCCCC
Confidence 999999974
No 49
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.76 E-value=2.9e-18 Score=151.37 Aligned_cols=83 Identities=16% Similarity=-0.038 Sum_probs=77.1
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHh
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLE 120 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~ 120 (129)
-+..-=|||++.+||||+|++|.+|++.||+++.|++|.|++|+||||+||+.+|+++ |++|++++ .++..|.+++
T Consensus 250 ~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~---G~sp~ela~~y~~~F~~d~ 326 (699)
T PRK14535 250 RMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAEN---GETIGELTARFIQAMHEDA 326 (699)
T ss_pred EEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHc---CCCHHHHHHHHHHHHHHHH
Confidence 3344447899999999999999999999999999999999999999999999999999 99999997 7899999999
Q ss_pred hccCCcc
Q psy14678 121 ASLLVTI 127 (129)
Q Consensus 121 ~~L~i~~ 127 (129)
++|||+.
T Consensus 327 ~~LnI~~ 333 (699)
T PRK14535 327 DALGVLR 333 (699)
T ss_pred HHcCCCC
Confidence 9999974
No 50
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.75 E-value=7.2e-18 Score=144.70 Aligned_cols=110 Identities=12% Similarity=0.024 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
++...+.++++.++.|+... ...+++++|..++|||+|++|+||+|+.+++|+++|++++.|++|.++.
T Consensus 87 ~~~~~~~~~~~~~~~~g~~~-----------~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~ 155 (507)
T PRK01611 87 ALAELVLAILEAGERYGRSD-----------IGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREY 155 (507)
T ss_pred HHHHHHHHHHhchhhcCCCc-----------CCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34444555555555665332 2256789999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
|+||+|.++...+.+. +..+++++ .....|+++++.|||++
T Consensus 156 ~i~D~G~qi~~~a~~~---~~~~~~~~~~~~~~~~~~l~~LgI~~ 197 (507)
T PRK01611 156 YVNDAGTQIGMLIASL---ELLWRKAVDISLDEIKEDLDRLGVHF 197 (507)
T ss_pred eeCCccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCee
Confidence 9999999999999988 77888887 67999999999999975
No 51
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.73 E-value=1.3e-17 Score=143.20 Aligned_cols=83 Identities=22% Similarity=0.113 Sum_probs=75.3
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC----------CCCcCCchHHHHHHHhcCCCCCHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP----------GWDCHGLPIELKAITSKDKLLSPLDI 109 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~----------G~D~~G~ki~~~a~k~l~~~~~p~e~ 109 (129)
..|+|. ||||+.+||||+|++|.+|++.||+++.|++|.|++ |+|+||+||+.+|+++ |++|.|+
T Consensus 25 ~mYvCG--pTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~---g~~~~e~ 99 (490)
T PRK14536 25 RLYGCG--PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEH---GKSVLEI 99 (490)
T ss_pred EEEeeC--CccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHc---CCCHHHH
Confidence 345555 789999999999999999999999999999999997 5666699999999999 9999999
Q ss_pred H-HHHHHHHHHhhccCCcc
Q psy14678 110 R-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 110 ~-~~~~~~~~~~~~L~i~~ 127 (129)
+ .+.+.|.+++++|||+.
T Consensus 100 a~~~~~~f~~d~~~Lni~~ 118 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIER 118 (490)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 7 78999999999999975
No 52
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.73 E-value=1.5e-17 Score=120.55 Aligned_cols=76 Identities=17% Similarity=-0.014 Sum_probs=70.8
Q ss_pred EEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhh
Q psy14678 43 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEA 121 (129)
Q Consensus 43 i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~ 121 (129)
++.+.|||||.+||||++++++.|+++|+++++|++|.++.|+|++|.++...|.+. +.++++++ ..+..|++.++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---GENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999998 99999997 67888888764
No 53
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.70 E-value=5.9e-17 Score=138.93 Aligned_cols=84 Identities=17% Similarity=0.038 Sum_probs=75.3
Q ss_pred EEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcC----------CchHHHHHHHhcCCCCCHHHHH
Q psy14678 41 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH----------GLPIELKAITSKDKLLSPLDIR 110 (129)
Q Consensus 41 ~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~----------G~ki~~~a~k~l~~~~~p~e~~ 110 (129)
.-+..-=|||++.+||||+|++|.+|+++||++++|++|.|++|++|. |+||+.+|+++ |++|.|++
T Consensus 22 v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~---g~~~~e~a 98 (481)
T PRK14534 22 VKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARER---GLTVYEIS 98 (481)
T ss_pred eEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHc---CCCHHHHH
Confidence 444444488999999999999999999999999999999997666666 99999999999 99999997
Q ss_pred -HHHHHHHHHhhccCCcc
Q psy14678 111 -KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 111 -~~~~~~~~~~~~L~i~~ 127 (129)
.++..|.+++++|||+.
T Consensus 99 ~~~~~~f~~d~~~Lni~~ 116 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVY 116 (481)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 78999999999999974
No 54
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.70 E-value=3.4e-17 Score=133.16 Aligned_cols=83 Identities=22% Similarity=0.147 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPR 118 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~ 118 (129)
++|+|. |||++.+||||+|++|..|++.||++..|++|.+++|++|.++||..+|.++ |+++.|++ .+.++|.+
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~---g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREE---GVSPQELARRYEEEFFE 84 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHT---TS-HHHHHHHHHHHHHH
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhc---cCCHHHHHHHHHHHHHH
Confidence 455555 7889999999999999999999999999999999999999999999999999 99999996 78999999
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
++++|||..
T Consensus 85 dm~~Lnv~~ 93 (300)
T PF01406_consen 85 DMKALNVLP 93 (300)
T ss_dssp HHHHTT---
T ss_pred HHHHcCCCC
Confidence 999999975
No 55
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.67 E-value=2.6e-16 Score=130.56 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcC------------------CchHHHHHHHh
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH------------------GLPIELKAITS 99 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~------------------G~ki~~~a~k~ 99 (129)
+.+++|+++++ |||.|||||+++++.+|+++||+|++|++|.|++|+|+| |.|+...++..
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~ 96 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPF 96 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhc
Confidence 35689998885 999999999999999999999999999999999999999 77888888777
Q ss_pred cCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 100 KDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 100 l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
|..+ +++ .+...|.+.++.|||+.
T Consensus 97 ---g~~~-~~~d~~~~~f~~~l~~lgi~~ 121 (353)
T cd00674 97 ---GCCE-SYAEHFERPFEESLEKLGIEV 121 (353)
T ss_pred ---CCCH-HHHHHHHHHHHHHHHHcCCee
Confidence 8888 886 78999999999999985
No 56
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.4e-16 Score=135.71 Aligned_cols=84 Identities=21% Similarity=0.112 Sum_probs=77.9
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLP 117 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~ 117 (129)
=+.|+|. |||++.+||||+|++|..|++.||++..||.|.||++++|.++||..+|.++ |.++.+++ .++++|.
T Consensus 23 V~mYvCG--pTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~---g~~~~ev~~~~i~~f~ 97 (464)
T COG0215 23 VKMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREE---GLSIREVAERYIAAFF 97 (464)
T ss_pred EEEEecC--CccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 3455555 7899999999999999999999999999999999999999999999999999 99999997 7899999
Q ss_pred HHhhccCCcc
Q psy14678 118 RLEASLLVTI 127 (129)
Q Consensus 118 ~~~~~L~i~~ 127 (129)
+++++|||..
T Consensus 98 ~D~~aL~v~~ 107 (464)
T COG0215 98 EDMDALNVLP 107 (464)
T ss_pred HHHHHhCCCC
Confidence 9999999953
No 57
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.56 E-value=4.3e-15 Score=135.10 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=61.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhc-C-----------CCCCHHH---------HH-H
Q psy14678 54 PHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK-D-----------KLLSPLD---------IR-K 111 (129)
Q Consensus 54 lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l-~-----------~~~~p~e---------~~-~ 111 (129)
|||||+++++++|+++||+||+|++|+|++|||+||+||+.+|++.. + .|+++++ ++ +
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 79999999999999999999999999999999999999999987531 0 1444443 33 3
Q ss_pred HHHHHHHHhhccCCcc
Q psy14678 112 KGLHLPRLEASLLVTI 127 (129)
Q Consensus 112 ~~~~~~~~~~~L~i~~ 127 (129)
+...+++.+++||+++
T Consensus 81 ~~~~~~~~~~~lG~~~ 96 (897)
T PRK12300 81 FSEEAKEDMKRIGYSI 96 (897)
T ss_pred hHHHHHHHHHHhCcEE
Confidence 4688999999999876
No 58
>KOG0434|consensus
Probab=99.55 E-value=1.3e-14 Score=128.27 Aligned_cols=83 Identities=35% Similarity=0.659 Sum_probs=74.4
Q ss_pred CccccchhhhHHHHHHh--------cCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 18 DLSECGFSELYSWQREA--------LNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 18 ~~~~~~~~~~~~w~~~~--------~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
.|-++++.-+.+|++.+ ..++++|.+.++||+++|.||-||+...+++|++.||..+.||.|..-+||||||
T Consensus 9 nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HG 88 (1070)
T KOG0434|consen 9 NFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHG 88 (1070)
T ss_pred CCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCC
Confidence 35555555666899877 2467899999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhc
Q psy14678 90 LPIELKAITSK 100 (129)
Q Consensus 90 ~ki~~~a~k~l 100 (129)
+|+|-..++.|
T Consensus 89 lPVE~eIDKkL 99 (1070)
T KOG0434|consen 89 LPVEYEIDKKL 99 (1070)
T ss_pred Cccceeechhc
Confidence 99999999987
No 59
>KOG0433|consensus
Probab=99.52 E-value=5.6e-14 Score=124.70 Aligned_cols=90 Identities=49% Similarity=0.708 Sum_probs=76.9
Q ss_pred hhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHH-HHHHHhcC---
Q psy14678 26 ELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIE-LKAITSKD--- 101 (129)
Q Consensus 26 ~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~-~~a~k~l~--- 101 (129)
..+.|++...+++..|.+.+ +||.|||||+++.+++|++.||+.+.|.++.|++||||||+||+ .+|.+.+.
T Consensus 46 ~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~ 121 (937)
T KOG0433|consen 46 PEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE 121 (937)
T ss_pred hHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhcc
Confidence 33456666555778888888 79999999999999999999999999999999999999999999 68887772
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy14678 102 KLLSPLDIRKKGLHLPRL 119 (129)
Q Consensus 102 ~~~~p~e~~~~~~~~~~~ 119 (129)
...+|.|++++++.|+..
T Consensus 122 ~~~s~leiR~~Ar~fA~~ 139 (937)
T KOG0433|consen 122 GSRTPLEIRAKARIFADE 139 (937)
T ss_pred ccCCcHHHHHHHHHHHHH
Confidence 456899999888877653
No 60
>KOG0437|consensus
Probab=99.43 E-value=1.5e-13 Score=122.32 Aligned_cols=89 Identities=27% Similarity=0.377 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
-|++-.|.+|+..+.|+.+. ++ +. ..++++|+++.|.||.||.+|+||+.+....|+..-|.|++|++|+|++
T Consensus 16 eiEk~~q~~W~~e~~fevda-~~-----el-~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPf 88 (1080)
T KOG0437|consen 16 EIEKKYQKKWDTEKVFEVDA-PN-----EL-QKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPF 88 (1080)
T ss_pred HHHHHHHHhhhhhhheeccC-ch-----hc-ccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeec
Confidence 47788899999999886432 11 11 1267899999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHh
Q psy14678 84 GWDCHGLPIELKAITS 99 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~ 99 (129)
|++|.|+||...|++.
T Consensus 89 gFHCTGMPI~A~AdKL 104 (1080)
T KOG0437|consen 89 GFHCTGMPIKASADKL 104 (1080)
T ss_pred ccccCCCccHHhHHHH
Confidence 9999999999999886
No 61
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.41 E-value=3.4e-13 Score=116.44 Aligned_cols=88 Identities=16% Similarity=0.068 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC--------chHHHHHHHhc---------
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG--------LPIELKAITSK--------- 100 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G--------~ki~~~a~k~l--------- 100 (129)
++++++++++ +|||.|||||+++.+.+|+++|++|++|++|.|++|+|+|| .|....+++.+
T Consensus 22 ~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 22 KPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 3458888887 59999999999999999999999999999999999999997 44422233332
Q ss_pred CCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 101 DKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 101 ~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
..|. +++++ .+...|.+.++.|||+.
T Consensus 101 p~G~-~~~~~~~~~~~~~~~~~~~gi~~ 127 (510)
T PRK00750 101 PFGC-HESYAEHFNAPLREFLDRFGIEY 127 (510)
T ss_pred CCCC-chHHHHHHHHHHHHHHHHcCCce
Confidence 1244 78996 77999999999999975
No 62
>KOG2007|consensus
Probab=99.37 E-value=1.7e-12 Score=111.42 Aligned_cols=86 Identities=22% Similarity=0.122 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHH-hcCCceEEeCCCCcCCchHHHHHHHh-c-CCCCCHHH-HHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNL-LQGKRVHYVPGWDCHGLPIELKAITS-K-DKLLSPLD-IRKKGLH 115 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~-~~G~~V~~~~G~D~~G~ki~~~a~k~-l-~~~~~p~e-~~~~~~~ 115 (129)
.+|+|. ||||+..||||||+||..|++.|+++ .-||+|.|++|++|.++||..+|.++ . ..+.+-.+ |+.+..+
T Consensus 57 ~wY~CG--pTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~e 134 (586)
T KOG2007|consen 57 TWYICG--PTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEE 134 (586)
T ss_pred EEEEec--CcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHH
Confidence 455555 79999999999999999999999999 89999999999999999999999632 1 11333333 3556699
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|.++|.+|||.+
T Consensus 135 F~~DM~~LnvLp 146 (586)
T KOG2007|consen 135 FLQDMAALNVLP 146 (586)
T ss_pred HHHHHHHhCCCC
Confidence 999999999975
No 63
>KOG1247|consensus
Probab=99.30 E-value=1.2e-12 Score=110.82 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHH-HHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKIL-KDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGL 114 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~-~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~ 114 (129)
++...+|+.+.||+|..||+||+.+.++ +|+++||.+.+|+...+++|+|+.|.+++.+|.++ |.+|+|+| ++-.
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkalee---g~tP~elcdKyh~ 88 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEE---GLTPQELCDKYHG 88 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHc---cCCHHHHHHhcch
Confidence 5677999999999999999999998655 99999999999999999999999999999999999 99999998 5566
Q ss_pred HHHHHhhccCCcc
Q psy14678 115 HLPRLEASLLVTI 127 (129)
Q Consensus 115 ~~~~~~~~L~i~~ 127 (129)
-++..++=++|+.
T Consensus 89 ihk~vy~Wf~Idf 101 (567)
T KOG1247|consen 89 IHKVVYDWFKIDF 101 (567)
T ss_pred hHHHHHHhhcccc
Confidence 6666666666653
No 64
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.24 E-value=1.1e-11 Score=107.36 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcC------------------CchHHHHHHHhc
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH------------------GLPIELKAITSK 100 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~------------------G~ki~~~a~k~l 100 (129)
++++|+++.+ |||.|||||++..+.+|+++|+++++|++|.+++|+|++ |.|+.....-.
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~- 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE- 95 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC-
Confidence 4699999988 999999999999999999999999999999999999999 88888777776
Q ss_pred CCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 101 DKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 101 ~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
|.. +.+. .+...|.+.++.|||+.
T Consensus 96 --g~~-~s~~~h~~~~~~~~l~~~gi~~ 120 (515)
T TIGR00467 96 --GCK-TSYAEHFLIPFLESLPVLGINP 120 (515)
T ss_pred --CCc-HHHHHHHHHHHHHHHHHcCCeE
Confidence 877 7775 67899999999999874
No 65
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.14 E-value=1.6e-10 Score=100.71 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCC
Q psy14678 5 ISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84 (129)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G 84 (129)
...+++++.+..+.|+... . ++++++|..++|||+|++||||+|+.+++|+++|++++.|++|.-..-
T Consensus 90 ~~~~~~~~~~~~~~~g~~~-----------~-~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~y 157 (566)
T TIGR00456 90 LERLIQKILTQKEDYGSKK-----------L-KNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYY 157 (566)
T ss_pred HHHHHHHHHhcccccCCCC-----------C-CCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEee
Confidence 3344555556666665432 2 356899999999999999999999999999999999999999997666
Q ss_pred CCcCCchHH
Q psy14678 85 WDCHGLPIE 93 (129)
Q Consensus 85 ~D~~G~ki~ 93 (129)
+.|.|..+-
T Consensus 158 inD~G~Q~~ 166 (566)
T TIGR00456 158 VNDWGRQFG 166 (566)
T ss_pred ecchHHHHH
Confidence 666665443
No 66
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.9e-10 Score=100.82 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCC-ccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEE
Q psy14678 3 EYISLYLQDLFKNIPD-LSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHY 81 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~ 81 (129)
+++.+.+++++.+.+. |+... ...+++++|...+|||+|++|+||+|+.+++|+++|.++..||+|.-
T Consensus 91 ~~~~~~~~~~l~~~~~~~G~~~-----------~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r 159 (577)
T COG0018 91 EFLAELLLEILEKGDDRYGRSK-----------LGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTR 159 (577)
T ss_pred HHHHHHHHHHHHhcccccCccc-----------cCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeE
Confidence 3566777777776444 33443 33568999999999999999999999999999999999999999998
Q ss_pred eCCCCcCCchHHHH
Q psy14678 82 VPGWDCHGLPIELK 95 (129)
Q Consensus 82 ~~G~D~~G~ki~~~ 95 (129)
..-+.|.|..+-.-
T Consensus 160 ~~yvnD~G~Q~~~l 173 (577)
T COG0018 160 ENYVNDWGTQIGML 173 (577)
T ss_pred EeeECcHHHHHHHH
Confidence 88888888766433
No 67
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.07 E-value=1.5e-10 Score=95.80 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=61.0
Q ss_pred HHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcC
Q psy14678 9 LQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH 88 (129)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~ 88 (129)
+++++.++..| ... ...+++.+|..++|||+|++|+||+|+.+++|+++|.++..||+|.-..-+.|.
T Consensus 2 i~~il~~~~~y-~~~-----------~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~ 69 (354)
T PF00750_consen 2 INEILEKGEEY-GSE-----------KGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDW 69 (354)
T ss_dssp HHHHHHHGGGT-T-------------TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTT
T ss_pred HHHHHhcchhc-ccc-----------cCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCC
Confidence 46677777777 333 447889999999999999999999999999999999999999999999989999
Q ss_pred CchHHHHH
Q psy14678 89 GLPIELKA 96 (129)
Q Consensus 89 G~ki~~~a 96 (129)
|..+-.-+
T Consensus 70 G~Q~~~l~ 77 (354)
T PF00750_consen 70 GTQIGLLA 77 (354)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 98775444
No 68
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.00 E-value=1.2e-09 Score=95.42 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a 96 (129)
++++.+|...+|||+|++|+||+|+.+++|+++|.++..||+|.-..-+.|.|..+-.-+
T Consensus 111 ~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~ 170 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLI 170 (562)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHH
Confidence 357899999999999999999999999999999999999999998888888887664433
No 69
>PLN02286 arginine-tRNA ligase
Probab=98.94 E-value=2.5e-09 Score=93.68 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 96 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a 96 (129)
++++++|...+|||+|++|+||+|+.+++|+++|.++..||+|.-..-+.|.|..+-.-+
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~ 174 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLI 174 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHH
Confidence 447899999999999999999999999999999999999999998888888887665443
No 70
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.21 E-value=2e-06 Score=68.47 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=38.0
Q ss_pred CCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchH
Q psy14678 46 GPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 92 (129)
Q Consensus 46 ~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki 92 (129)
=.|+|||.+||||+++.++.++++| ++.+.|+..+||.+.+.
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r 47 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT 47 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc
Confidence 3689999999999999999999999 67889999999988877
No 71
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.88 E-value=1.5e-05 Score=70.18 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchH
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 92 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki 92 (129)
+++-=+|+|||.|||||+++.++.+.++| .+...|+.-+||.+.++
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~ 147 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT 147 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc
Confidence 44446799999999999999999999998 46677777788877754
No 72
>KOG1195|consensus
Probab=97.66 E-value=7.2e-05 Score=65.12 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
-.+..+++.++.+..+|+.+. ..++++.+|...+|+..-+.|+||.|+.+++-+++...+..|++|.-+
T Consensus 85 ~~~k~~l~~i~~~~~~~g~~~-----------~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~ 153 (567)
T KOG1195|consen 85 RLIKSVLPIIEEQREKYGKNE-----------LGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRV 153 (567)
T ss_pred HHHHHHHHHHHHHhcccCccc-----------cccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeeh
Confidence 357788899999999998765 446899999999999999999999999999999999999999999876
Q ss_pred C
Q psy14678 83 P 83 (129)
Q Consensus 83 ~ 83 (129)
.
T Consensus 154 N 154 (567)
T KOG1195|consen 154 N 154 (567)
T ss_pred h
Confidence 5
No 73
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.40 E-value=0.00021 Score=62.96 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=34.0
Q ss_pred EEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 41 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 41 ~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
-+++==+|.|||.|||||+++.++.+.++| .+...|+.-+||...
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp 137 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDP 137 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCc
Confidence 356666799999999999999999999986 234455555666544
No 74
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.28 E-value=0.00019 Score=60.17 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
+..+++.++ -+|+|.+|||+++..+..|+++|-++.+|.+|.++..+|+.+
T Consensus 22 ~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D 72 (360)
T PF01921_consen 22 KEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMD 72 (360)
T ss_dssp -SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTS
T ss_pred CccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 355665555 679999999999999999999999999999999999999984
No 75
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00095 Score=58.25 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=45.0
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
..+++.++ -+|+|.+|||+++..+.+|++.|-++.+|.+|.++.=+|+.+
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D 68 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYD 68 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCc
Confidence 55777666 679999999999999999999999999999999999998884
No 76
>KOG4426|consensus
Probab=97.01 E-value=0.0016 Score=56.53 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=46.1
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcC
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH 88 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~ 88 (129)
+.++.++...+|+.--..|+||.|+.+++|.++|.+...|++|+.+.-.-+.
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDW 237 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDW 237 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccch
Confidence 4688999999999999999999999999999999999999999876644333
No 77
>PLN02486 aminoacyl-tRNA ligase
Probab=96.99 E-value=0.0061 Score=51.58 Aligned_cols=86 Identities=13% Similarity=-0.013 Sum_probs=55.7
Q ss_pred hhHHHHHHhcCCCCcEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHH-hcCCceEEeCCCCcCCchHHHHHHHhcCCC
Q psy14678 26 ELYSWQREALNGKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNL-LQGKRVHYVPGWDCHGLPIELKAITSKDKL 103 (129)
Q Consensus 26 ~~~~w~~~~~~~~~~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~-~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~ 103 (129)
++..+.+.-+ .+++|++.++. -|+| .+||||...+. . .||++ .-|..+....+ |+ +.... . +
T Consensus 60 d~~~~l~~~e-~~~~~~vYtG~-~PSg~~lHlGHlv~~~---~-~~~lQ~~~~~~~~I~ia-D~-----e~~~~-~---~ 123 (383)
T PLN02486 60 DLEEILDAYE-KGEKFYLYTGR-GPSSEALHLGHLIPFM---F-TKYLQDAFKVPLVIQLT-DD-----EKFLW-K---N 123 (383)
T ss_pred CHHHHHHHHh-cCCCeEEEeCC-CCCCccccHHHHHHHH---H-HHHHHHhCCCeEEEEec-CH-----HHHhh-c---C
Confidence 3444555433 56678877774 4788 59999966553 3 34555 44665555533 43 22222 2 6
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 104 LSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 104 ~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
.+.+++.+.+.+..+.+.++++++
T Consensus 124 ~~~e~i~~~~~en~~~iiA~G~dp 147 (383)
T PLN02486 124 LSVEESQRLARENAKDIIACGFDV 147 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCC
Confidence 899999888889999999888764
No 78
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.82 E-value=0.01 Score=49.86 Aligned_cols=85 Identities=18% Similarity=0.003 Sum_probs=54.1
Q ss_pred hHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCH
Q psy14678 27 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSP 106 (129)
Q Consensus 27 ~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p 106 (129)
+..+.+.-. .++++.+.++. -|+|.+||||... ...+.+++. .|++|.+..+=++ .. .- ++.++
T Consensus 54 ~d~il~~~~-~~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~h-a~------~~---~~~~~ 117 (368)
T PRK12285 54 YDKILEAYR-NGKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDE-AY------AA---RGLSW 117 (368)
T ss_pred HHHHHHHHh-cCCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchH-HH------hc---CCCCH
Confidence 333444433 34566666553 3579999999643 334444444 7888876665333 21 11 15788
Q ss_pred HHHHHHHHHHHHHhhccCCcc
Q psy14678 107 LDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 107 ~e~~~~~~~~~~~~~~L~i~~ 127 (129)
+++.+.+.++...+.++|+++
T Consensus 118 e~~~~~~~~~~~~~lA~G~Dp 138 (368)
T PRK12285 118 EETREWAYEYILDLIALGFDP 138 (368)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 999888888999999998874
No 79
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.54 E-value=0.0033 Score=50.92 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.3
Q ss_pred CCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 47 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 47 ~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
.|.|||.+||||+++.++.-.++| +..|.=++.+--+|.
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~ 44 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP 44 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC
Confidence 588999999999999999999988 345665666666665
No 80
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.49 E-value=0.0023 Score=50.74 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 46 GPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 46 ~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
=+|.|||.+|+||+++.++.-.++|-. .|.=++.+--+|.
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~ 45 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDP 45 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC
Confidence 368899999999999999988887753 4555555555554
No 81
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=96.46 E-value=0.0026 Score=52.20 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=27.1
Q ss_pred CCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 47 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 47 ~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
+|.|||.+||||+++.++.-.++| +..|.=++.+--+|.
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~ 45 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP 45 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc
Confidence 588999999999999999888877 445655666555554
No 82
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.43 E-value=0.0047 Score=49.49 Aligned_cols=71 Identities=20% Similarity=0.096 Sum_probs=48.7
Q ss_pred CCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc-C-CchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC
Q psy14678 49 YANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC-H-GLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLV 125 (129)
Q Consensus 49 ~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~-~-G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i 125 (129)
-|+| .+||||.... ..+.|+++. |++|.+..|=.+ . |+|.-+..++. +.+++++.+.+..++..+.+++.
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~---~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERK---LLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCcccccc---CCCHHHHHHHHHHHHHHHHHHHc
Confidence 3688 8999997753 356666664 998776665322 2 44544444444 68899998888888888888776
Q ss_pred c
Q psy14678 126 T 126 (129)
Q Consensus 126 ~ 126 (129)
+
T Consensus 81 ~ 81 (269)
T cd00805 81 F 81 (269)
T ss_pred c
Confidence 3
No 83
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.34 E-value=0.0028 Score=55.64 Aligned_cols=43 Identities=30% Similarity=0.450 Sum_probs=31.9
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
+++==+|.|||.|||||+++.++...++|- ..|.=++.+--+|
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLRiEDTD 54 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILRFDDTN 54 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCC
Confidence 556667999999999999999999998874 3454444444333
No 84
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.31 E-value=0.0033 Score=50.05 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=28.7
Q ss_pred CCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 46 GPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 46 ~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
=.|.|||.+|+||+++.++.-.++|- ..|.=++.+--+|.
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~ 45 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQ 45 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCC
Confidence 36889999999999999998888773 34533444444443
No 85
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.31 E-value=0.0033 Score=50.11 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=30.5
Q ss_pred EcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 44 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 44 ~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
+==+|.|||.+|+||+++.++.-.++|- ..|.=++.+--+|.
T Consensus 4 ~RFAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLRieDtD~ 45 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLRFDDTNP 45 (238)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEecCCCC
Confidence 3346899999999999999999888765 34554555544443
No 86
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0034 Score=54.43 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=33.0
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
+++==+|.|||.|||||+++.++--.++|.+ .|.=++.+--||-
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiEDTD~ 53 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDTDP 53 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecCCCC
Confidence 5666678999999999999999988888753 3554555555444
No 87
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.21 E-value=0.0036 Score=55.77 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=32.1
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
+++==+|.|||.|||||+++.++...++|-. .|.=++.+--+|
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRiEDTD 95 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRFDDTN 95 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCCC
Confidence 5666679999999999999999999988743 454444444443
No 88
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=96.16 E-value=0.0063 Score=53.43 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=29.3
Q ss_pred cCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 45 DGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 45 ~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
==+|.|||.|||||+++.++...++|- ..|.=++.+--+|
T Consensus 4 RFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRieDTd 43 (522)
T TIGR00440 4 RFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFDDTN 43 (522)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEcCCC
Confidence 347899999999999999999988873 3454444444333
No 89
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.16 E-value=0.0039 Score=55.04 Aligned_cols=43 Identities=28% Similarity=0.231 Sum_probs=31.2
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
+++==+|.|||.|||||+++.++...++|- ..|.=++.+--+|
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRieDTd 72 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRFDDTN 72 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCC
Confidence 556667899999999999999999988874 3454444443333
No 90
>PLN02907 glutamate-tRNA ligase
Probab=96.13 E-value=0.0063 Score=55.24 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=33.0
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
+++==+|.|||.|||||+++.++...++|- ..|.=++.+--+|-
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR~eDTdp 257 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFARR--YKGKLIVRFDDTNP 257 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEecCCCC
Confidence 566667999999999999999999999883 44554555444443
No 91
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.08 E-value=0.039 Score=47.00 Aligned_cols=76 Identities=20% Similarity=0.128 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc--CCchHHHHHHHhcCCCCCHHHHHHHHH
Q psy14678 38 KPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC--HGLPIELKAITSKDKLLSPLDIRKKGL 114 (129)
Q Consensus 38 ~~~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~--~G~ki~~~a~k~l~~~~~p~e~~~~~~ 114 (129)
++++.+..+ --|+| .+||||+.... ..|+++..|+++.++.|--+ .|+|.-...++. ..+.+++.+.+.
T Consensus 31 ~~~~~iy~G-~dPT~~sLHlGhlv~l~----~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~---~l~~e~i~~n~~ 102 (410)
T PRK13354 31 GKPLTLYLG-FDPTAPSLHIGHLVPLM----KLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERK---LLTDEQVQHNAK 102 (410)
T ss_pred CCCcEEEEc-ccCCCCCcchhhHHHHH----HHHHHHHcCCeEEEEEcccccccCCCCccccccc---CCCHHHHHHHHH
Confidence 345666655 33687 59999955532 34555668999887775444 577664444454 678888877666
Q ss_pred HHHHHhh
Q psy14678 115 HLPRLEA 121 (129)
Q Consensus 115 ~~~~~~~ 121 (129)
.+...+.
T Consensus 103 ~i~~q~~ 109 (410)
T PRK13354 103 TYTEQIF 109 (410)
T ss_pred HHHHHHH
Confidence 6665433
No 92
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=96.04 E-value=0.0052 Score=50.44 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=30.4
Q ss_pred EEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 43 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 43 i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
++==.|.|||.+||||+++.++.-.++|-. .|.=++.+--+|.
T Consensus 7 ~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~ 49 (299)
T PRK05710 7 IGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP 49 (299)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC
Confidence 344458899999999999999888877653 3544555554444
No 93
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=95.96 E-value=0.006 Score=54.09 Aligned_cols=46 Identities=28% Similarity=0.217 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
+.+. ++==+|.|||.+||||+++.++...++|.. .|.=++.+--+|
T Consensus 49 ~gkv-~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRiEDTD 94 (574)
T PTZ00437 49 GGKP-YFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRYDDTN 94 (574)
T ss_pred CCcE-EEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCC
Confidence 3444 455568899999999999999999888753 354344443333
No 94
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.87 E-value=0.017 Score=46.47 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=44.4
Q ss_pred CCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCC-CCcC-CchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCc
Q psy14678 50 ANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPG-WDCH-GLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVT 126 (129)
Q Consensus 50 vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G-~D~~-G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~ 126 (129)
|+| .+||||..+. ..+.++ +..|+++.+..| .+.. |+|.-...++. -.+++++.+.+..+...+.+++++
T Consensus 8 PTg~~lHlGh~~~l---~~~~~l-q~~g~~~~~~I~d~~a~~~d~sg~~~~r~---~~~~~~i~~n~~~~~~~~~a~g~d 80 (273)
T cd00395 8 PTADSLHIGHLIGL---LTFRRF-QHAGHRPIFLIGGQTGIIGDPSGKKSERT---LNDPEEVRQNIRRIAAQYLAVGIF 80 (273)
T ss_pred CCCCCccHHHHHHH---HHHHHH-HHCCCCEEEEEecCceeeCCCCCcccccc---CCCHHHHHHHHHHHHHHHHHhcCc
Confidence 689 7999998772 233344 446999887665 2111 33332222333 347888888888888888888775
No 95
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=95.70 E-value=0.0087 Score=51.45 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=28.8
Q ss_pred CCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 47 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 47 ~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
.|.|||.+||||+++.++.-.++|- ..|.=++.+--+|.
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD~ 43 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTDK 43 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC
Confidence 5889999999999999988887764 23544555555544
No 96
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=95.69 E-value=0.014 Score=50.54 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 46 GPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 46 ~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
=.|.|||.+||||+++.++.-.++|- ..|.=++.+--+|
T Consensus 6 fAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieDtD 44 (470)
T TIGR00464 6 FAPSPTGYLHIGGARTALFNYLFAKH--TGGEFILRIEDTD 44 (470)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC
Confidence 35889999999999999998888873 3454444544443
No 97
>PLN02859 glutamine-tRNA ligase
Probab=95.58 E-value=0.01 Score=54.36 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=26.1
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHH
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSN 72 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~ 72 (129)
+++==||.|||.+||||+++.++.-.++|..
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~ 295 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER 295 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 4455578999999999999999988888863
No 98
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=95.53 E-value=0.011 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.1
Q ss_pred CCCCCCCcCCchHHHHHHHHHHHHHH
Q psy14678 46 GPPYANGTPHIGHAVNKILKDITLRS 71 (129)
Q Consensus 46 ~~P~vng~lHiGH~~~~v~~D~~~R~ 71 (129)
=.|.|||.+||||+++.++.-.++|-
T Consensus 7 FAPSPTG~lHiG~artAL~n~l~Ar~ 32 (445)
T PRK12558 7 FAPSPTGYLHVGNARTALLNWLYARK 32 (445)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 35889999999999999876666554
No 99
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=95.46 E-value=0.018 Score=50.45 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=30.1
Q ss_pred EcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 44 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 44 ~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
+-=.|.|||.+|+||+++.++.-.++| +..|.=++.+--+|
T Consensus 7 tRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD 47 (513)
T PRK14895 7 TRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTD 47 (513)
T ss_pred EeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCC
Confidence 434588899999999999999888888 33455455554444
No 100
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.41 E-value=0.014 Score=53.38 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=29.7
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
+++==+|.|||.+||||+++.++...++|- ..|.=++.+
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR~ 70 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLRM 70 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe
Confidence 567677999999999999999998888874 235433333
No 101
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=95.38 E-value=0.013 Score=50.74 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=29.3
Q ss_pred EEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 43 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 43 i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
.+==.|.|||.+||||+++.++.-.++|-. .|.=++.+--+|
T Consensus 6 ~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRieDtD 47 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIEDTD 47 (476)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCC
Confidence 344458899999999999999888777652 344444444444
No 102
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=95.30 E-value=0.057 Score=43.58 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=44.2
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+. ..++++..|+++.+..+ |.|.. ... ..+++++.+.+.++...+.++|+++
T Consensus 8 PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~Ia-D~ha~------t~~---~~~~~~~~~~~~~~~~~~lA~G~dp 72 (280)
T cd00806 8 PSGSLHLGHYLGAFR---FWVWLQEAGYELFFFIA-DLHAL------TVK---QLDPEELRQNTRENAKDYLACGLDP 72 (280)
T ss_pred CCchhhHHHHHHHHH---HHHHHHhCCCCEEEEec-chHHH------hCC---CCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 689999999888443 22233334888876665 33333 111 3588888888888999998888864
No 103
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=95.22 E-value=0.12 Score=42.70 Aligned_cols=74 Identities=19% Similarity=0.105 Sum_probs=43.2
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPR 118 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~ 118 (129)
+++.+.++ --|+|.+||||... .-.+.++++ .|++|.+..+ |.|..- ....+++++.+.+..+..
T Consensus 29 ~~~~v~~G-~~PTG~lHLG~~~~---~~~~~~lq~-~g~~~~i~Ia-D~ha~~---------~~~~~~~~i~~~~~~~~~ 93 (329)
T PRK08560 29 EEPKAYIG-FEPSGKIHLGHLLT---MNKLADLQK-AGFKVTVLLA-DWHAYL---------NDKGDLEEIRKVAEYNKK 93 (329)
T ss_pred CCCEEEEc-cCCCCcchhhhhHH---HHHHHHHHH-CCCeEEEEEc-cchhhc---------CCCCCHHHHHHHHHHHHH
Confidence 34444433 34579999998543 222555554 4888765554 222221 001467777777777888
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
.+.++|+++
T Consensus 94 ~~~A~G~dp 102 (329)
T PRK08560 94 VFEALGLDP 102 (329)
T ss_pred HHHHcCCCh
Confidence 888887753
No 104
>PLN02627 glutamyl-tRNA synthetase
Probab=95.01 E-value=0.031 Score=49.27 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=30.1
Q ss_pred EEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 43 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 43 i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
.+==.|.|||.+||||+++.++.-.++| +..|.=++.+--+|
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD 88 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTD 88 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC
Confidence 3333468999999999999999988888 33455455554444
No 105
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=94.78 E-value=0.061 Score=45.55 Aligned_cols=77 Identities=17% Similarity=0.023 Sum_probs=40.1
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPR 118 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~ 118 (129)
+++.+..+ --|+|.+||||.. +..--+..+ ...|++|.+..+ |-|..-. .+. |.+++++.+.+..+..
T Consensus 65 ~~~~v~~G-~~PTG~lHLG~g~--i~~~~~~~l-q~~G~~v~~~Ia-D~hA~~~----~~~---g~~l~~i~~~~~~~~~ 132 (383)
T PTZ00126 65 ERPICYDG-FEPSGRMHIAQGI--LKAINVNKL-TKAGCVFVFWVA-DWFALLN----NKM---GGDLEKIRKVGEYFIE 132 (383)
T ss_pred CCCEEEEE-ECCCCcccccchH--hHhHHHHHH-HhCCCeEEEEEc-cceeecC----CCC---CCCHHHHHHHHHHHHH
Confidence 33444443 2368899999921 111122223 445899876654 2222210 111 4455666556666666
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
.+.++|+++
T Consensus 133 ~~~A~GlDp 141 (383)
T PTZ00126 133 VWKAAGMDM 141 (383)
T ss_pred HHHHhCCCc
Confidence 677766653
No 106
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=94.25 E-value=0.13 Score=43.36 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCC-CCcC-CchHHHHHHHhcCCCCCHHHHHHHHHH
Q psy14678 40 EFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPG-WDCH-GLPIELKAITSKDKLLSPLDIRKKGLH 115 (129)
Q Consensus 40 ~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G-~D~~-G~ki~~~a~k~l~~~~~p~e~~~~~~~ 115 (129)
++.+..+ .-|+| .+||||.... -.+.++ +..|++|.++.| ++.. |+|.-...++. -.+.+++.+++..
T Consensus 30 ~~~vy~G-~dPTg~~lHlGh~v~l---~~l~~l-q~~G~~~~iligd~ta~igdpsg~~~~R~---~~~~~~i~~n~~~ 100 (377)
T TIGR00234 30 KIKLYVG-FDPTAPSLHLGHLVPL---LKLRDF-QQAGHEVIVLLGDATALIGDPSGKSEERK---LLTREEVQENAEN 100 (377)
T ss_pred CCEEEEe-eCCCCCCccHHHHHHH---HHHHHH-HHCCCcEEEEEeccchhhcCCCChHHHhh---cCCHHHHHHHHHH
Confidence 4455554 33688 8999997753 224444 457999876654 3222 55644443443 4566666655433
No 107
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=94.23 E-value=0.33 Score=41.33 Aligned_cols=101 Identities=16% Similarity=0.005 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCC
Q psy14678 7 LYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 85 (129)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~ 85 (129)
.+++.+-.|+-.+...++..+-...+ ++++.+.++ --|+| .+||||.... ..+. +++..|+++.++.|-
T Consensus 5 ~~l~~l~~Rg~~~~~~~~~~l~~~l~-----~~~~~vy~G-~dPTg~slHlGhlv~l---~~l~-~lQ~~G~~~~~ligd 74 (408)
T PRK05912 5 NLLEELKERGLIEQITDEEELEEKLA-----KEPLRIYLG-FDPTAPSLHLGHLVPL---LKLR-RFQDAGHKPIALIGG 74 (408)
T ss_pred HHHHHHHhCCCeeecCCHHHHHHHhh-----CCCCEEEEe-ecCCCCCccHHhHHHH---HHHH-HHHHCCCcEEEEEcC
Confidence 45555555665333222334432222 234555554 33688 5999997742 3344 444579987766542
Q ss_pred -Cc-CCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q psy14678 86 -DC-HGLPIELKAITSKDKLLSPLDIRKKGLHLPRLE 120 (129)
Q Consensus 86 -D~-~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~ 120 (129)
+. .|+|.-...++. ..+.+++.+.+..+.+..
T Consensus 75 ~ta~igDpsgk~~~r~---~l~~e~i~~n~~~i~~ql 108 (408)
T PRK05912 75 FTGMIGDPSGKSETRK---LLTREQVAENAETIKEQL 108 (408)
T ss_pred ceeEcCCCCCCchhhc---cCCHHHHHHHHHHHHHHH
Confidence 11 133331122233 466777766655554433
No 108
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.14 E-value=0.12 Score=42.72 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=40.9
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+.. +.+++. +++|.+..+ |-|..- . ..+++++.+.+..+...+.++|+++
T Consensus 10 PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia-D~ha~t-------~---~~~~~~i~~~~~~~~~~~lA~GlDp 72 (333)
T PRK00927 10 PTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA-DLHALT-------V---PQDPEELRENTRELAADYLACGIDP 72 (333)
T ss_pred CCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe-cHHHHh-------C---CCCHHHHHHHHHHHHHHHHeEccCh
Confidence 6899999998877532 444444 377766554 222110 1 2467888888888888888888765
No 109
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=93.83 E-value=0.19 Score=41.52 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCC
Q psy14678 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84 (129)
Q Consensus 49 ~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G 84 (129)
-|+|.+||||..+.+. .++....|++|.+..+
T Consensus 10 ~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~Ia 41 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQ----TKWLQQFGVELFICIA 41 (328)
T ss_pred CCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEee
Confidence 3689999999887653 3444467988776554
No 110
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.62 E-value=0.23 Score=42.83 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=41.5
Q ss_pred CCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 49 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 49 ~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
.|+|.|||||..+.+.. ..+.+...|+++.|... |-|-+- . ..+|+++.+...++...|-+.|+++
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT-------~---~~dp~~lr~~~~e~aa~~LA~GlDP 75 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALI-------K---CDDPARIQRSTLEIAATWLAAGLDP 75 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhcc-------C---CCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 46899999997776431 23344445888765442 333221 1 3467777777777777787777765
No 111
>PLN02886 aminoacyl-tRNA ligase
Probab=93.12 E-value=0.2 Score=42.65 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=42.1
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+ .-+..+++ |+++.|..- |-|-.- . ..+++++.+.+.++...+.++|+++
T Consensus 55 PSG~lHLGnylGai--~~~v~lQ~--~~~~~~~IA-DlHAlt-------~---~~~~~~lr~~~~~~~a~~lA~GlDP 117 (389)
T PLN02886 55 PTGSIHLGNYLGAI--KNWVALQE--TYDTFFCVV-DLHAIT-------L---PHDPRELGKATRSTAAIYLACGIDP 117 (389)
T ss_pred CCCccHHHHHHHHH--HHHHHHhc--cCCEEEEEe-cHHHhh-------C---CCCHHHHHHHHHHHHHHHHHcCcCc
Confidence 58999999977765 22333333 777654332 333331 1 3488888888888999999999876
No 112
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.94 E-value=0.84 Score=39.05 Aligned_cols=100 Identities=19% Similarity=0.108 Sum_probs=58.5
Q ss_pred HHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCC--
Q psy14678 9 LQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW-- 85 (129)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~-- 85 (129)
..++..++.+-....+..+....+.. +..+..+ .-|+| .+||||..... ..|.++..|++|....|-
T Consensus 6 ~~~L~~Rg~~~~i~~ee~l~~ll~~~-----~~~~Y~G-fDPTa~slHlGhlv~l~----kL~~fQ~aGh~~ivLigd~t 75 (401)
T COG0162 6 LLELIKRGLIEQITDEEELRKLLEEG-----PLRVYIG-FDPTAPSLHLGHLVPLM----KLRRFQDAGHKPIVLIGDAT 75 (401)
T ss_pred HHHHHHcCchhccCcHHHHHHHHhcC-----CceEEEe-eCCCCCccchhhHHHHH----HHHHHHHCCCeEEEEecccc
Confidence 45566777655444444444443331 2333333 22588 89999987654 344556679998877653
Q ss_pred CcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q psy14678 86 DCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEA 121 (129)
Q Consensus 86 D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~ 121 (129)
--.|+|.-...++. -.+.+++.+.++.+++.+.
T Consensus 76 a~IgDpsGk~e~r~---~l~~e~v~~n~~~i~~ql~ 108 (401)
T COG0162 76 AMIGDPSGKSEERK---LLTRETVLENAETIKKQLG 108 (401)
T ss_pred eecCCCCCCHHHHh---hccHHHHHHHHHHHHHHhc
Confidence 33477764444444 5677777766666665544
No 113
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.31 E-value=0.49 Score=39.29 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=42.5
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCC-ceEEeCCCCcCCchHHHHHHHhcCCCCCH-HHHHHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGK-RVHYVPGWDCHGLPIELKAITSKDKLLSP-LDIRKKGLHL 116 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~-~V~~~~G~D~~G~ki~~~a~k~l~~~~~p-~e~~~~~~~~ 116 (129)
++.+++.- -|+|.+||||..+.+ -.++....++ ++.+.. .|.|..-+ + +..+ +++.+...++
T Consensus 5 ~~~vlSG~--~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~I-aDlha~t~-----~----~~~~~~~l~~~~~e~ 68 (314)
T COG0180 5 KFRVLSGI--QPSGKLHLGNYLGAI----RNWVLLQEEYYECFFFI-ADLHAITV-----R----QDPTEEDLRQATREV 68 (314)
T ss_pred CceEEecC--CCCCCcchhHhHHHH----HHHHHHhcccCceEEEE-ecHHHhhc-----C----CCChHHHHHHHHHHH
Confidence 44454544 359999999998875 4566666674 665433 23332210 0 2222 4445666777
Q ss_pred HHHhhccCCcc
Q psy14678 117 PRLEASLLVTI 127 (129)
Q Consensus 117 ~~~~~~L~i~~ 127 (129)
..++-++|+++
T Consensus 69 ~a~~LA~GiDP 79 (314)
T COG0180 69 AADYLAVGLDP 79 (314)
T ss_pred HHHHHHhccCc
Confidence 77777777664
No 114
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=92.13 E-value=0.43 Score=39.62 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=39.7
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+.. ..+.+...|.++.+... |-|-+ + . ..+|+++.+.+.+....+-++|+++
T Consensus 12 PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IA-DlHal-t------~---~~~~~~l~~~~~~~~~~~lA~GlDP 76 (332)
T PRK12556 12 PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIA-DYHAL-N------A---VHDPEQFRSYTREVAATWLSLGLDP 76 (332)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEe-chhhc-c------C---CCCHHHHHHHHHHHHHHHhheeecc
Confidence 5899999997775431 22233344655654433 33322 0 1 2367777777788888888888765
No 115
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=91.78 E-value=0.51 Score=39.15 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=38.8
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+.. .++++..|. |.+.. .|.|.. .. . ..+++++.+.+.+...++.++|+++
T Consensus 11 PTG~~HLGn~l~~~~~---~~~lQ~~~~-~~i~I-aD~ha~--~~----~---~~~~~~i~~~~~~~~~~~lA~G~dp 74 (333)
T PRK12282 11 PTGKLHLGHYVGSLKN---RVALQNEHE-QFVLI-ADQQAL--TD----N---AKNPEKIRRNILEVALDYLAVGIDP 74 (333)
T ss_pred CCCcchHHHHHHHHHH---HHHHHhCCC-EEEEE-ccchhH--hC----C---CCCHHHHHHHHHHHHHHHHHhCcCh
Confidence 4799999998886532 223344454 54333 344422 11 1 3577777777777777777777764
No 116
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.03 E-value=0.66 Score=39.67 Aligned_cols=63 Identities=21% Similarity=0.151 Sum_probs=41.3
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHh-cCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLL-QGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~-~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+ ..|..+ .|+++.+..- |-|-.- -. ..+++++.+.+..+...+.++|+++
T Consensus 11 PSG~~HLGnylG~i-----k~wv~lq~~~~~~~~IA-DlHAlt------~~---~~d~~~ir~~~~~~~a~~lA~GlDP 74 (398)
T PRK12283 11 PTGRLHLGHYHGVL-----KNWVKLQHEYECFFFVA-DWHALT------TH---YETPEVIEKNVWDMVIDWLAAGVDP 74 (398)
T ss_pred CCCcchHHHHHHHH-----HHHHHHhcCCcEEEEee-cHHHHh------CC---CCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 58999999988854 245443 4777654332 332220 01 2378888888888888888888875
No 117
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=90.86 E-value=0.62 Score=37.30 Aligned_cols=75 Identities=17% Similarity=0.015 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRL 119 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~ 119 (129)
++.+.++. -|+|.+||||...... +. ++...|++|.+..|=.+ +. .... .+.+++.+......+...
T Consensus 5 ~~~~y~G~-~PTg~lHlG~l~~~~~---~~-~lq~~g~~~~i~iaD~~-a~-----~~~~--~~~~~~~~~~~~~~~~~~ 71 (292)
T PF00579_consen 5 PFRVYTGI-DPTGDLHLGHLVPIMK---LI-WLQKAGFKVIILIADLH-AL-----LGDP--SKGDERKIRSRAEYNIND 71 (292)
T ss_dssp SEEEEEEE-ESSSS-BHHHHHHHHH---HH-HHHHTTSEEEEEEEHHH-HH-----HTTT--TGSSHHHHHHHHHHHHHH
T ss_pred CcEEEEeE-CCCCcccchHHHHHHH---HH-HHHhcCCccceEecchh-hc-----ccCc--ccccHHHHHHHHHHHHHH
Confidence 34444442 3688899998776532 33 33338999887765211 10 0110 023455555555555555
Q ss_pred --hhccCCcc
Q psy14678 120 --EASLLVTI 127 (129)
Q Consensus 120 --~~~L~i~~ 127 (129)
+.++++++
T Consensus 72 ~~~la~g~d~ 81 (292)
T PF00579_consen 72 KAILALGLDP 81 (292)
T ss_dssp HHHHHTTSHT
T ss_pred HHHHHhccCc
Confidence 66766654
No 118
>KOG1147|consensus
Probab=89.51 E-value=0.34 Score=43.28 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=26.4
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
+++-=||-|+|.||||||...++-- |.... ++=..++-+|+..
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNq----Yfa~~-~~G~LIvRFDDTN 243 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQ----YFAQA-YQGKLIVRFDDTN 243 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHH----HHHHh-cCceEEEEecCCC
Confidence 3444568899999999999876533 33322 2233344556654
No 119
>KOG1148|consensus
Probab=88.96 E-value=0.18 Score=45.34 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=16.8
Q ss_pred EEEcCCCCCCCcCCchHHHH
Q psy14678 42 ILHDGPPYANGTPHIGHAVN 61 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~ 61 (129)
+++-=||-|||.|||||+-.
T Consensus 249 V~TRFPPEPNG~LHIGHaKA 268 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKA 268 (764)
T ss_pred eEEeCCCCCCceeeecchhh
Confidence 45666889999999999865
No 120
>KOG2145|consensus
Probab=88.71 E-value=1.5 Score=36.65 Aligned_cols=51 Identities=18% Similarity=0.004 Sum_probs=35.1
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCC
Q psy14678 29 SWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 85 (129)
Q Consensus 29 ~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~ 85 (129)
......+ .+++|++.++---.++.+|+||...++ +..|++- -++|..|.-.
T Consensus 75 ~iLd~~e-q~kpFyLYTGRGpSS~smHlGHliPFi----ftKwlQe-~F~vpLVIql 125 (397)
T KOG2145|consen 75 LILDAYE-QGKPFYLYTGRGPSSESMHLGHLIPFI----FTKWLQD-VFDVPLVIQL 125 (397)
T ss_pred HHHHHHH-cCCceEEEeCCCCCccccccccchhHH----HHHHHHH-HhCCceEEEe
Confidence 3444443 678899999888789999999999987 4555553 2355544433
No 121
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=87.22 E-value=2.1 Score=39.07 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHH-HHhcCCceEEeC
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRS-NLLQGKRVHYVP 83 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~-~~~~G~~V~~~~ 83 (129)
+++.+.++ --|+|.+||||.. +. .+..+ ....|++|.+..
T Consensus 31 ~~~rv~sG-i~PTG~lHLGng~---~~-aik~~~~~q~g~~~~~lI 71 (682)
T PTZ00348 31 PLIRCYDG-FEPSGRMHIAQGI---FK-AVNVNKCTQAGCEFVFWV 71 (682)
T ss_pred CCCEEEEe-eCCCCcCeeccHH---HH-HHHHHHHHhCCCeEEEEE
Confidence 34555544 3478999999931 11 11111 124688876543
No 122
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=74.32 E-value=3.9 Score=31.10 Aligned_cols=30 Identities=23% Similarity=0.026 Sum_probs=21.4
Q ss_pred HHHHHHhcCCceEEeCCCCcCCchHHHHHHHh
Q psy14678 68 TLRSNLLQGKRVHYVPGWDCHGLPIELKAITS 99 (129)
Q Consensus 68 ~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~ 99 (129)
++||+|+.||++.|... .....+...+.++
T Consensus 18 LARwLRllGydt~~~~~--~~d~~i~~i~~~e 47 (165)
T COG1656 18 LARWLRLLGYDTVYSSN--ESDDEIILIAKKE 47 (165)
T ss_pred HHHHHHHcCCceeeecc--CCcHHHHHHHhcC
Confidence 69999999999999872 3334555555553
No 123
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=71.26 E-value=3.2 Score=30.26 Aligned_cols=30 Identities=23% Similarity=0.007 Sum_probs=22.5
Q ss_pred HHHHHHhcCCceEEeCCCCcCCchHHHHHHHh
Q psy14678 68 TLRSNLLQGKRVHYVPGWDCHGLPIELKAITS 99 (129)
Q Consensus 68 ~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~ 99 (129)
++||+|+.|++|.+..+.++. .+...|.++
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~--~il~~A~~e 41 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDD--EILELAREE 41 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChH--HHHHHhhhC
Confidence 699999999999999977554 444445443
No 124
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=68.14 E-value=27 Score=28.91 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCceEEeC--CCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCc
Q psy14678 62 KILKDITLRSNLLQGKRVHYVP--GWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVT 126 (129)
Q Consensus 62 ~v~~D~~~R~~~~~G~~V~~~~--G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~ 126 (129)
.+.+=+++|-+...|.+|.++. |||.|+.-....+... .++.+-...|.++++.+++.
T Consensus 231 ~~~~~l~a~~~~~~g~~v~~V~~gGwDTH~~~~~~~~~ll-------~~L~~alaaf~~dL~~~g~~ 290 (392)
T PF07394_consen 231 FGQQLLLARRLIEAGVRVVFVSLGGWDTHSNQGNRHARLL-------PELDQALAAFIQDLKERGLL 290 (392)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCccCccccHhHHHHHH-------HHHHHHHHHHHHHHHhcCCc
Confidence 4445567777777899999888 9999996555444433 67777788888888887653
No 125
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=65.99 E-value=12 Score=27.53 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=27.7
Q ss_pred CCcCCchHHHHHHH-HHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhc--------CCCCCHHHHH
Q psy14678 51 NGTPHIGHAVNKIL-KDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK--------DKLLSPLDIR 110 (129)
Q Consensus 51 ng~lHiGH~~~~v~-~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l--------~~~~~p~e~~ 110 (129)
-|++||||.+-++. -+-..+-....+.+|.+-++.|. ..+|-..+ -.|+||++-.
T Consensus 41 FGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~-----~kRaNAA~Lig~y~Vi~l~~spe~A~ 104 (141)
T PF14671_consen 41 FGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDP-----KKRANAAFLIGAYAVIYLGMSPEEAY 104 (141)
T ss_dssp -----HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-H-----HHHHHHHHHHHHHHHHTS---HHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCCh-----hHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 58999999998765 33333334567899999998776 22333322 3588888853
No 126
>PRK03094 hypothetical protein; Provisional
Probab=59.62 E-value=15 Score=24.71 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=26.8
Q ss_pred HHHHHHhcCCceEEeCC------CCc--------CCchHHHHHHHhc---CCCCCHHHHHHHHH
Q psy14678 68 TLRSNLLQGKRVHYVPG------WDC--------HGLPIELKAITSK---DKLLSPLDIRKKGL 114 (129)
Q Consensus 68 ~~R~~~~~G~~V~~~~G------~D~--------~G~ki~~~a~k~l---~~~~~p~e~~~~~~ 114 (129)
+..+++.+||.|.-+.+ +|+ .=+-++..+.+.- ..|+|++|++++.+
T Consensus 13 i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve 76 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVE 76 (80)
T ss_pred HHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHH
Confidence 67788899998854432 222 2122232222221 35999999986643
No 127
>KOG1149|consensus
Probab=58.16 E-value=8.6 Score=33.77 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 48 P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
|.|+|.+|+|-+|+...-=+++|- ..|.=++.+--+|
T Consensus 40 PSPTGfLHlGgLRTALfNYLfArk--~gGkFiLRiEDTD 76 (524)
T KOG1149|consen 40 PSPTGFLHLGGLRTALFNYLFARK--KGGKFILRIEDTD 76 (524)
T ss_pred CCCCcceehhhHHHHHHHHHHHHh--cCCeEEEEecccc
Confidence 667999999999998655444442 2243344444443
No 128
>KOG2713|consensus
Probab=55.52 E-value=40 Score=28.27 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=16.5
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKIL 64 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~ 64 (129)
+-++..-- |+|.|||||-.+.+-
T Consensus 14 ~rvfSGIQ--PTG~~HLGNYLGai~ 36 (347)
T KOG2713|consen 14 KRVFSGIQ--PTGIPHLGNYLGAIK 36 (347)
T ss_pred ceeEeccC--CCCCchhhhhhhhhh
Confidence 44555544 499999999998753
No 129
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=44.14 E-value=28 Score=20.94 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=8.7
Q ss_pred CCcCCchHHHH
Q psy14678 51 NGTPHIGHAVN 61 (129)
Q Consensus 51 ng~lHiGH~~~ 61 (129)
-+++|.||..-
T Consensus 8 Fdp~H~GH~~~ 18 (66)
T TIGR00125 8 FDPFHLGHLDL 18 (66)
T ss_pred cCCCCHHHHHH
Confidence 45699999974
No 130
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=39.97 E-value=21 Score=23.92 Aligned_cols=10 Identities=60% Similarity=0.757 Sum_probs=9.0
Q ss_pred CcCCchHHHH
Q psy14678 52 GTPHIGHAVN 61 (129)
Q Consensus 52 g~lHiGH~~~ 61 (129)
|.+|.||...
T Consensus 9 dp~H~GH~~l 18 (105)
T cd02156 9 GYLHIGHAKL 18 (105)
T ss_pred CCCCHHHHHH
Confidence 8899999985
No 131
>KOG2623|consensus
Probab=37.16 E-value=99 Score=27.03 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=34.1
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCC-C-----CcCCchHHHHHHHh
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG-W-----DCHGLPIELKAITS 99 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G-~-----D~~G~ki~~~a~k~ 99 (129)
+.++-+.-=||+- .+|+||....+. +.++ ...|+++.-+.| . |..|-+.|+....+
T Consensus 63 p~~vYcGfDPTA~-SLHvGNLl~lm~---L~hf-qr~Gh~~ialIGgATa~vGDPSGrktER~~l~~ 124 (467)
T KOG2623|consen 63 PQYVYCGFDPTAE-SLHVGNLLALMV---LIHF-QRAGHRPIALIGGATASVGDPSGRKTERGQLAE 124 (467)
T ss_pred CceEEecCCCcHH-hhhhcchHHHHH---HHHH-HHcCCCceEEeccccccccCCCCCccchhhhhh
Confidence 3455555556553 599999987542 4444 447999775554 2 55566666655443
No 132
>PLN02907 glutamate-tRNA ligase
Probab=36.04 E-value=41 Score=30.99 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=25.0
Q ss_pred EeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHH
Q psy14678 81 YVPGWDCHGLPIELKAITSKDKLLSPLDIRKKG 113 (129)
Q Consensus 81 ~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~ 113 (129)
+++|||+-.+|+.....+. |++|+++.+.+
T Consensus 462 ~v~Gwddpr~pt~~~~rrr---G~~~eai~~f~ 491 (722)
T PLN02907 462 KVEGWDDPRFPTVQGIVRR---GLKIEALKQFI 491 (722)
T ss_pred cccCCCCCCcccHHHHHHc---CCCHHHHHHHH
Confidence 4559999999999888887 99999987653
No 133
>COG4720 Predicted membrane protein [Function unknown]
Probab=35.92 E-value=32 Score=26.49 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=18.7
Q ss_pred EEEEcCCCCCCCcCCchHHHHHHH
Q psy14678 41 FILHDGPPYANGTPHIGHAVNKIL 64 (129)
Q Consensus 41 ~~i~~~~P~vng~lHiGH~~~~v~ 64 (129)
.++..|.|.|||.+|+|.+.-++.
T Consensus 24 ~~i~IPtp~~~~~i~L~da~i~la 47 (177)
T COG4720 24 RLIRIPTPIPNGFLTLGDAGIALA 47 (177)
T ss_pred heeEecCCCCCCeeeHHHHHHHHH
Confidence 356778888999999998876543
No 134
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=33.83 E-value=55 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=17.0
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhhcc
Q psy14678 97 ITSKDKLLSPLDIRKKGLHLPRLEASL 123 (129)
Q Consensus 97 ~k~l~~~~~p~e~~~~~~~~~~~~~~L 123 (129)
++.++.|.+|++|...-..+.....+.
T Consensus 31 kr~L~~G~~P~eyQq~q~~~~AieAA~ 57 (68)
T PF08988_consen 31 KRKLDRGGTPQEYQQLQQQYDAIEAAI 57 (68)
T ss_dssp HHHHTCTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 333467999999976555555444443
No 135
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.69 E-value=1.4e+02 Score=25.53 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCC-CCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcC-
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPP-YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH- 88 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P-~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~- 88 (129)
.+-+..-.|-+..+.-.|.|.+... ..+.-+|. -++|.+|+||.-.+ ...+|.-+.-+.-||+.
T Consensus 26 ~Ma~sp~~F~RGtahLfy~~~~~~p-----~~lp~~p~tw~cGD~HLgN~ga~---------~~~~G~V~f~i~DFDe~~ 91 (410)
T COG4320 26 KMAESPYVFYRGTAHLFYQDMKTWP-----WSLPKTPFTWLCGDAHLGNFGAA---------RNSKGNVVFKIADFDEGH 91 (410)
T ss_pred HhhcCCceEEecchHHHHHHHhcCc-----cccCCCCceEEecccccccchhh---------ccCCCceEEEecccchhh
Confidence 3444555555554444457777653 22222222 25899999996543 34566655556677765
Q ss_pred -CchHHHHHHHhc-------CCCCCHHHHHHHHHHHHHHh
Q psy14678 89 -GLPIELKAITSK-------DKLLSPLDIRKKGLHLPRLE 120 (129)
Q Consensus 89 -G~ki~~~a~k~l-------~~~~~p~e~~~~~~~~~~~~ 120 (129)
|.++-.-+.-.+ ..++.-.+..++|+.|...+
T Consensus 92 ~g~~~~DlvRl~~Sl~~a~Rs~~L~d~d~~~~~~~~v~~Y 131 (410)
T COG4320 92 LGQYIWDLVRLAVSLVLAGRSNGLNDADIEKAIKIMVQAY 131 (410)
T ss_pred ccchHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH
Confidence 444432222111 12555555555555555444
No 136
>PRK09620 hypothetical protein; Provisional
Probab=32.81 E-value=71 Score=24.97 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=36.0
Q ss_pred CCcEEEEcCCCC--CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 38 KPEFILHDGPPY--ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 38 ~~~~~i~~~~P~--vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
+++++|+.+|=. ..+.=.|+|..+-.++--+++++..+|++|.++.|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 466777766422 2344567888877778888899999999999888753
No 137
>TIGR03277 methan_mark_9 putative methanogenesis marker domain 9. A gene for a protein that contains a copy of this domain, to date, is found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. A 69-amino acid core region of this 110-amino acid domain contains eight invariant Cys residues, including two copies of a motif [WFY]CCxxKPC. These motifs could be consistent with predicted metal-binding transcription factor as was suggested for the COG4008 family. Some members of this family have an additional N-terminal domain of about 250 amino acids from the nifR3 family of predicted TIM-barrel proteins.
Probab=32.02 E-value=56 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=19.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy14678 91 PIELKAITSKDKLLSPLDIRKKGLHLPR 118 (129)
Q Consensus 91 ki~~~a~k~l~~~~~p~e~~~~~~~~~~ 118 (129)
|+-.+.++. |+||+||.++-.+|.+
T Consensus 29 p~~~al~~~---~~sp~ef~~~K~ef~~ 53 (109)
T TIGR03277 29 PIHPKLAEL---GLSPQEFVRIKEEFAK 53 (109)
T ss_pred ccHHHHHHc---CCCHHHHHHHHHHHhc
Confidence 667777777 9999999887777654
No 138
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=30.58 E-value=34 Score=25.97 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCCCC-C-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 38 KPEFILHDGPPYAN-G-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 38 ~~~~~i~~~~P~vn-g-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
+++.+|+.+|=.-. + .==|+|..+--.+-.+++....+|.+|.++.|-..
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~ 54 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS 54 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 45677776643321 2 22267777777888899999999999999999853
No 139
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=30.18 E-value=96 Score=22.43 Aligned_cols=28 Identities=11% Similarity=-0.168 Sum_probs=16.3
Q ss_pred CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 52 GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 52 g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
+++|.||..-.- +.+..+-+|.+++..+
T Consensus 9 dP~H~GHl~l~~-------~a~~~~d~v~~~~~~~ 36 (155)
T TIGR01510 9 DPVTNGHLDIIK-------RAAALFDEVIVAVAKN 36 (155)
T ss_pred CCCcHHHHHHHH-------HHHHhCCEEEEEEcCC
Confidence 468999987421 2222235677777643
No 140
>KOG3493|consensus
Probab=29.56 E-value=1.4e+02 Score=19.60 Aligned_cols=34 Identities=26% Similarity=0.115 Sum_probs=28.1
Q ss_pred hcCCceEEeCCC-CcCCchHHHHHHHhcCCCCCHHHHH
Q psy14678 74 LQGKRVHYVPGW-DCHGLPIELKAITSKDKLLSPLDIR 110 (129)
Q Consensus 74 ~~G~~V~~~~G~-D~~G~ki~~~a~k~l~~~~~p~e~~ 110 (129)
..|.+|...++. |..|++=...|.+. |..|+.++
T Consensus 9 rLGKKVRvKCn~dDtiGD~KKliaaQt---GT~~~kiv 43 (73)
T KOG3493|consen 9 RLGKKVRVKCNTDDTIGDLKKLIAAQT---GTRPEKIV 43 (73)
T ss_pred hcCceEEEEeCCcccccCHHHHHHHhh---CCChhHhH
Confidence 359999999998 45699888888877 99999885
No 141
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.44 E-value=1.3e+02 Score=23.55 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 63 ILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 63 v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
|-.|++..-++..||+|..-.|+=
T Consensus 89 Vp~~vl~daLk~~GyrVevr~~~l 112 (204)
T COG3286 89 VPPDVLIDALKLLGYRVEVRGGEL 112 (204)
T ss_pred CCHHHHHHHHHhCCceEEeeCcee
Confidence 346888888999999999998883
No 142
>PHA02031 putative DnaG-like primase
Probab=29.38 E-value=1.5e+02 Score=24.20 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=57.4
Q ss_pred cCCCccc--cchhhhHHHHHHhcCCCCcEEEEcCCCCC------------CCcCCchHHHHHHHHHHHHHHHHhcCCceE
Q psy14678 15 NIPDLSE--CGFSELYSWQREALNGKPEFILHDGPPYA------------NGTPHIGHAVNKILKDITLRSNLLQGKRVH 80 (129)
Q Consensus 15 ~~~~~~~--~~~~~~~~w~~~~~~~~~~~~i~~~~P~v------------ng~lHiGH~~~~v~~D~~~R~~~~~G~~V~ 80 (129)
..|+|-. +.++.+|....... ..+..+++.+..-| |...-+|-+.+--..-.+.|+ --.+|.
T Consensus 135 ~~PKYLN~~SP~~~l~~~~~~~~-~~~~vIlvEGYmDVI~l~~a~~aG~~naVA~LGTALT~~q~~~L~r~---~~~~Vi 210 (266)
T PHA02031 135 QQPKWVGYGYPAPDYVGWPPELS-MPRPVVLTEDYLSALKVRWACNKPEVFAVALLGTRLRDRLAAILLQQ---TCPRVL 210 (266)
T ss_pred CCCCcCCCCCCcHHHhhchhhhc-cCCeEEEEcCcHHHHHHHHHHhcCcceEEECCcccCCHHHHHHHHhc---CCCCEE
Confidence 4456654 43556665444432 45556666554433 444556666665555455554 125799
Q ss_pred EeCCCCcCCchHHHHHHHhc------------CCCCCHHHHH
Q psy14678 81 YVPGWDCHGLPIELKAITSK------------DKLLSPLDIR 110 (129)
Q Consensus 81 ~~~G~D~~G~ki~~~a~k~l------------~~~~~p~e~~ 110 (129)
+..--|..|.+-..+|.+.+ ..|++|.++.
T Consensus 211 l~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~lP~g~DPDd~i 252 (266)
T PHA02031 211 IFLDGDPAGVDGSAGAMRRLRPLLIEGQVIITPDGFDPKDLE 252 (266)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCceEEEECCCCCChHHHH
Confidence 99999999998877777654 2689999996
No 143
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=29.02 E-value=1.2e+02 Score=22.50 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=16.6
Q ss_pred CcCCchHHHHHHHHHHHHHHHHhcC-CceEEeCCCCc
Q psy14678 52 GTPHIGHAVNKILKDITLRSNLLQG-KRVHYVPGWDC 87 (129)
Q Consensus 52 g~lHiGH~~~~v~~D~~~R~~~~~G-~~V~~~~G~D~ 87 (129)
+++|.||..-. .+-.+..+ .+|.+++..+.
T Consensus 9 dP~H~GH~~~~------~~a~~~~~~d~v~~~~~~~~ 39 (192)
T cd02165 9 DPPHLGHLAIA------EEALEELGLDRVLLLPSANP 39 (192)
T ss_pred CCCCHHHHHHH------HHHHHHcCCCEEEEEeCCCC
Confidence 45999999532 22222223 45777665543
No 144
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=26.91 E-value=1e+02 Score=18.94 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=19.4
Q ss_pred CCchHHHHHHHhcCCCCCHHHHHHHHHH
Q psy14678 88 HGLPIELKAITSKDKLLSPLDIRKKGLH 115 (129)
Q Consensus 88 ~G~ki~~~a~k~l~~~~~p~e~~~~~~~ 115 (129)
..+|++.+|.+. |+++..+-+.|++
T Consensus 14 fhlp~~eAA~~L---gv~~T~LKr~CR~ 38 (52)
T PF02042_consen 14 FHLPIKEAAKEL---GVSVTTLKRRCRR 38 (52)
T ss_pred hCCCHHHHHHHh---CCCHHHHHHHHHH
Confidence 357899999988 9998887666653
No 145
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.25 E-value=88 Score=22.34 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHh
Q psy14678 63 ILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITS 99 (129)
Q Consensus 63 v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~ 99 (129)
+-+++++++++..|++|....+..... .+..+|.+.
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~~s~e-~~v~aa~e~ 52 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLFQTPE-EIARQAVEA 52 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCHH-HHHHHHHHc
Confidence 457899999999999999776654444 344444444
No 146
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=26.08 E-value=1.5e+02 Score=19.05 Aligned_cols=59 Identities=14% Similarity=-0.118 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy14678 56 IGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLP 117 (129)
Q Consensus 56 iGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~ 117 (129)
+....+.....-+.+.+...|+.+.-..|.|..|.-.|....-. ++++++-++..++|.
T Consensus 11 ~s~~eN~~~~~~L~~~L~~~~~~~~~~~g~~~~~~W~E~s~~V~---~i~~~~A~~Lg~~f~ 69 (73)
T PF11697_consen 11 LSDEENRRRNRQLRAELQQLGLPYVPGVGGDPDGSWREPSFAVL---GISLEEAIALGRKFG 69 (73)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEeeccCCCCCccCCEeEEc---CCCHHHHHHHHHHhC
Confidence 44555666666777778888999988889998887644333332 788888777777764
No 147
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=25.87 E-value=2.7e+02 Score=23.39 Aligned_cols=59 Identities=15% Similarity=-0.022 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCceEEeCCCCcCCc-------------------hHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC
Q psy14678 65 KDITLRSNLLQGKRVHYVPGWDCHGL-------------------PIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLV 125 (129)
Q Consensus 65 ~D~~~R~~~~~G~~V~~~~G~D~~G~-------------------ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i 125 (129)
+++.+.-.++.|++|..+.-.||.-. ||.-+|.++ |.+-+|+.+..++..+-+.++++
T Consensus 113 F~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~RRGlAG~vlv~KiaGAaA~~---G~sL~ev~~~a~~~~~~~~Tigv 189 (331)
T PRK14481 113 FEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGRRGVAGTVFVHKIAGAAAEA---GASLDEVKALAEKVNPNIRSMGV 189 (331)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCCCchhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhhcceeee
Confidence 55556667788999999988887743 344444444 99999999999999888888877
Q ss_pred c
Q psy14678 126 T 126 (129)
Q Consensus 126 ~ 126 (129)
.
T Consensus 190 a 190 (331)
T PRK14481 190 A 190 (331)
T ss_pred c
Confidence 5
No 148
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=25.80 E-value=89 Score=21.14 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCceEEeCC
Q psy14678 55 HIGHAVNKILKDITLRSNLLQGKRVHYVPG 84 (129)
Q Consensus 55 HiGH~~~~v~~D~~~R~~~~~G~~V~~~~G 84 (129)
--||+..++ .+++-++.+|++|.+...
T Consensus 8 t~Ghv~P~l---ala~~L~~rGh~V~~~~~ 34 (139)
T PF03033_consen 8 TRGHVYPFL---ALARALRRRGHEVRLATP 34 (139)
T ss_dssp SHHHHHHHH---HHHHHHHHTT-EEEEEET
T ss_pred ChhHHHHHH---HHHHHHhccCCeEEEeec
Confidence 458888876 478888999999986553
No 149
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=25.78 E-value=1.5e+02 Score=21.97 Aligned_cols=69 Identities=13% Similarity=-0.100 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhc-CCCCC--HHHHHHHHHHHHHHhhccCCccc
Q psy14678 57 GHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK-DKLLS--PLDIRKKGLHLPRLEASLLVTII 128 (129)
Q Consensus 57 GH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l-~~~~~--p~e~~~~~~~~~~~~~~L~i~~~ 128 (129)
||-++ +.+++|.++..|++|.+......-...+..+.++.- .-++| -......+....+.+...+++.|
T Consensus 24 gHd~g---akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i 95 (143)
T COG2185 24 GHDRG---AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDI 95 (143)
T ss_pred ccccc---hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcce
Confidence 56554 467889999999999988777665443333322221 00111 23334566777777777776654
No 150
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.58 E-value=66 Score=21.49 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHH
Q psy14678 102 KLLSPLDIRKKGL 114 (129)
Q Consensus 102 ~~~~p~e~~~~~~ 114 (129)
.|+||+|+++..+
T Consensus 64 ~G~T~eEI~~~v~ 76 (80)
T PF03698_consen 64 SGLTAEEIVQEVE 76 (80)
T ss_pred CCCCHHHHHHHHH
Confidence 5999999986533
No 151
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=25.45 E-value=73 Score=23.20 Aligned_cols=29 Identities=10% Similarity=-0.216 Sum_probs=16.5
Q ss_pred CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 52 GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 52 g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
+++|.||..-.- .....+-+|.++++.+.
T Consensus 11 dP~H~GHl~~~~-------~a~~~~d~v~v~~~~~~ 39 (159)
T PRK00168 11 DPITNGHLDIIE-------RASRLFDEVIVAVAINP 39 (159)
T ss_pred CCCCHHHHHHHH-------HHHHHCCEEEEEECCCC
Confidence 568999987321 11222456777665544
No 152
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=25.24 E-value=98 Score=23.39 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCcCCchHH------HHHHHhcCCCCCHHHHHHH-HHHHHHH
Q psy14678 85 WDCHGLPIE------LKAITSKDKLLSPLDIRKK-GLHLPRL 119 (129)
Q Consensus 85 ~D~~G~ki~------~~a~k~l~~~~~p~e~~~~-~~~~~~~ 119 (129)
||+||..-. ..|.+..++|+|+++|++. =++|++.
T Consensus 107 wd~Hg~~C~vCl~ia~~a~~~~~~Gks~~eIR~~ID~kYk~g 148 (158)
T PF13798_consen 107 WDDHGTRCGVCLDIAVQAVQMYQEGKSPKEIRQYIDEKYKEG 148 (158)
T ss_pred ecccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 688876432 2222222579999999854 5666654
No 153
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=24.05 E-value=3.1e+02 Score=22.99 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCceEEeCCCCcCCc-------------------hHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC
Q psy14678 65 KDITLRSNLLQGKRVHYVPGWDCHGL-------------------PIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLV 125 (129)
Q Consensus 65 ~D~~~R~~~~~G~~V~~~~G~D~~G~-------------------ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i 125 (129)
+++.+.-.++.|++|..+.-.||.-. ||.-+|.++ |.+-+|+.+..++..+-..++++
T Consensus 110 F~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~RRGlAGtv~v~KiaGAaAe~---G~sL~ev~~~a~~~~~~~~Tigv 186 (326)
T TIGR02362 110 FSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRRRGVAGTILVHKILGAAAAE---GASLDELEHIAAALVTNIATIGV 186 (326)
T ss_pred HHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCCCchhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhhcceeee
Confidence 55666667788999999988887753 334344444 99999999999999998888887
Q ss_pred c
Q psy14678 126 T 126 (129)
Q Consensus 126 ~ 126 (129)
.
T Consensus 187 a 187 (326)
T TIGR02362 187 A 187 (326)
T ss_pred c
Confidence 4
No 154
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=23.64 E-value=1.4e+02 Score=19.47 Aligned_cols=27 Identities=15% Similarity=-0.090 Sum_probs=17.6
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHHHhh
Q psy14678 95 KAITSK-DKLLSPLDIRKKGLHLPRLEA 121 (129)
Q Consensus 95 ~a~k~l-~~~~~p~e~~~~~~~~~~~~~ 121 (129)
.++++| ..|++++|+.+.|.--..++.
T Consensus 36 ~~Eq~Li~eG~~~eeiq~LCdvH~~lf~ 63 (71)
T PF04282_consen 36 AAEQELIQEGMPVEEIQKLCDVHAALFK 63 (71)
T ss_pred HHHHHHHHcCCCHHHHHHHhHHHHHHHH
Confidence 444555 469999998777765555443
No 155
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.59 E-value=99 Score=20.75 Aligned_cols=47 Identities=13% Similarity=-0.027 Sum_probs=27.9
Q ss_pred CCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC-chHHHHHHH
Q psy14678 51 NGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG-LPIELKAIT 98 (129)
Q Consensus 51 ng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G-~ki~~~a~k 98 (129)
.|.+|.|+-.-.=..|++.+ ++.+|.++.|+++....- .-...+.++
T Consensus 6 dGvl~~g~~~ipga~e~l~~-L~~~g~~~~~lTNns~~s~~~~~~~L~~ 53 (101)
T PF13344_consen 6 DGVLYNGNEPIPGAVEALDA-LRERGKPVVFLTNNSSRSREEYAKKLKK 53 (101)
T ss_dssp TTTSEETTEE-TTHHHHHHH-HHHTTSEEEEEES-SSS-HHHHHHHHHH
T ss_pred ccEeEeCCCcCcCHHHHHHH-HHHcCCCEEEEeCCCCCCHHHHHHHHHh
Confidence 67788777654444666655 455699999999875433 333334433
No 156
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=23.46 E-value=92 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=15.8
Q ss_pred CCCCCCCcCC----chHHHHHHHHHHHHHHHHh
Q psy14678 46 GPPYANGTPH----IGHAVNKILKDITLRSNLL 74 (129)
Q Consensus 46 ~~P~vng~lH----iGH~~~~v~~D~~~R~~~~ 74 (129)
|||++-.+|| ..-+.+.+.-.++.||++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~tLY~lf~~ryL~k 34 (226)
T PHA02662 2 PPRTPPTPPRPPEPTPAAPGSLYDVFLARFLRR 34 (226)
T ss_pred CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHH
Confidence 4555544454 2334445556667788654
No 157
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=23.02 E-value=1e+02 Score=22.29 Aligned_cols=29 Identities=10% Similarity=-0.190 Sum_probs=16.9
Q ss_pred CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 52 GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 52 g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
+++|.||..-.- .+. ...-+|.++++.+.
T Consensus 9 dP~H~GHl~l~~--~a~-----~~~d~v~v~~~~~~ 37 (153)
T cd02163 9 DPITNGHLDIIE--RAS-----KLFDEVIVAVAVNP 37 (153)
T ss_pred CCCCHHHHHHHH--HHH-----HHCCEEEEEEcCCC
Confidence 458999998421 111 12356777776544
No 158
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=22.79 E-value=1.5e+02 Score=21.23 Aligned_cols=44 Identities=16% Similarity=-0.068 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHHHHHhcCCceE-EeCCCCcCCchHHHHHHHhc
Q psy14678 56 IGHAVNKILKDITLRSNLLQGKRVH-YVPGWDCHGLPIELKAITSK 100 (129)
Q Consensus 56 iGH~~~~v~~D~~~R~~~~~G~~V~-~~~G~D~~G~ki~~~a~k~l 100 (129)
|||.++.-+++.+.++++..|.++. |..+. ..|..|..+.++..
T Consensus 4 Ivhg~~~~~~~~v~~~L~~~~~ep~i~~~~~-~~g~tiie~le~~~ 48 (125)
T PF10137_consen 4 IVHGRDLAAAEAVERFLEKLGLEPIIWHEQP-NLGQTIIEKLEEAA 48 (125)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCceEEeecCC-CCCCchHHHHHHHh
Confidence 5777788889999999998887754 66666 66777777766664
No 159
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.58 E-value=94 Score=19.95 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCc-eEEeCCCCcCC
Q psy14678 65 KDITLRSNLLQGKR-VHYVPGWDCHG 89 (129)
Q Consensus 65 ~D~~~R~~~~~G~~-V~~~~G~D~~G 89 (129)
..+..+|-+.+|.. +.|...|+.||
T Consensus 46 D~iA~~wA~~~gv~~~~~~adW~~hG 71 (71)
T PF10686_consen 46 DRIAARWARERGVPVIRFPADWQRHG 71 (71)
T ss_pred HHHHHHHHHHCCCeeEEeCcChhhCC
Confidence 44568899999987 45888998887
No 160
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=22.40 E-value=3.3e+02 Score=20.36 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcC-CceEEeCCC
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQG-KRVHYVPGW 85 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G-~~V~~~~G~ 85 (129)
++..+..+.. +++|.||..-.- .+. +..| -.|.+++.-
T Consensus 4 ~~i~i~gGsF---dP~H~GH~~l~~--~a~----~~~~~d~v~~~p~~ 42 (203)
T PRK00071 4 KRIGLFGGTF---DPPHYGHLAIAE--EAA----ERLGLDEVWFLPNP 42 (203)
T ss_pred cEEEEEeeCC---CccCHHHHHHHH--HHH----HHcCCCEEEEEeCC
Confidence 3455666655 349999975421 111 2334 347776653
No 161
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=22.31 E-value=1.3e+02 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.3
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy14678 91 PIELKAITSKDKLLSPLDIRKKGLHLPR 118 (129)
Q Consensus 91 ki~~~a~k~l~~~~~p~e~~~~~~~~~~ 118 (129)
||-.+.++. |++|+||...-.+|.+
T Consensus 30 Pi~~al~~~---g~tpeefir~K~eFak 54 (153)
T COG4008 30 PIHEALKEL---GLTPEEFIRIKEEFAK 54 (153)
T ss_pred cHHHHHHHh---CCCHHHHHHHHHHHhh
Confidence 667777777 9999999877666654
No 162
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=22.23 E-value=1.8e+02 Score=16.97 Aligned_cols=37 Identities=14% Similarity=-0.118 Sum_probs=25.1
Q ss_pred hHHHHHHHhc----CCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 91 PIELKAITSK----DKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 91 ki~~~a~k~l----~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
+|..++.+.| ..+.++.|-......-.+++..+||+.
T Consensus 2 kil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~i~~ 42 (43)
T PF10979_consen 2 KILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYGIDE 42 (43)
T ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Confidence 4555666655 235677777666677788888888863
No 163
>COG3911 Predicted ATPase [General function prediction only]
Probab=21.98 E-value=2e+02 Score=22.06 Aligned_cols=81 Identities=15% Similarity=0.005 Sum_probs=51.7
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCc--eEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKR--VHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGL 114 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~--V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~ 114 (129)
.+...++.-++|-.-+.+| |..+..++|-++++.+..+|+ |...++|-. |-...++. ..+++|-...-+
T Consensus 81 ~~~~vFfDR~~~da~a~l~--~lsga~la~~v~~~~~~~~Yn~rVfl~qp~~~----iyqqde~R---k~tldeAv~~~e 151 (183)
T COG3911 81 VGGRVFFDRGPPDALAYLR--FLSGALLADEVATIVREGRYNPRVFLVQPWPF----IYQQDEER---KITLDEAVAFYE 151 (183)
T ss_pred ccCceeeccCcHHHHHHHH--HhcccHHHHHHHHHHHhcCCCCcEEecCCccc----cccchhhc---ccCHHHHHHHHH
Confidence 4566777777776655554 335677899999999998886 777778743 22233333 577777654445
Q ss_pred HHHHHhhccCCc
Q psy14678 115 HLPRLEASLLVT 126 (129)
Q Consensus 115 ~~~~~~~~L~i~ 126 (129)
...+.+..||-.
T Consensus 152 ~lv~aYt~LGye 163 (183)
T COG3911 152 VLVAAYTELGYE 163 (183)
T ss_pred HHHHHHHhcCce
Confidence 555555555543
No 164
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=21.66 E-value=3.5e+02 Score=23.06 Aligned_cols=59 Identities=15% Similarity=-0.077 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCceEEeCCCCcCCc-------------------hHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC
Q psy14678 65 KDITLRSNLLQGKRVHYVPGWDCHGL-------------------PIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLV 125 (129)
Q Consensus 65 ~D~~~R~~~~~G~~V~~~~G~D~~G~-------------------ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i 125 (129)
+++.+...+..|++|..+.-.||.-. ||.-+|.++ |.+-+|+.+..++..+-..++++
T Consensus 113 F~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gRRGlAGtvlv~KiaGAaAe~---G~sL~ev~~~a~~~~~~~~TiGv 189 (356)
T PRK11468 113 FETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAER---GYSLDQCAELGRKLNNQGHSIGI 189 (356)
T ss_pred HHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCCcchhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcceeee
Confidence 56666777888999998887766532 444444444 99999999999999998888887
Q ss_pred c
Q psy14678 126 T 126 (129)
Q Consensus 126 ~ 126 (129)
.
T Consensus 190 a 190 (356)
T PRK11468 190 A 190 (356)
T ss_pred e
Confidence 5
No 165
>PRK14679 hypothetical protein; Provisional
Probab=21.51 E-value=1.7e+02 Score=20.98 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=24.1
Q ss_pred CCCCCCcCCc-hHHHHHHHHHHHHHHHHhcCCceE
Q psy14678 47 PPYANGTPHI-GHAVNKILKDITLRSNLLQGKRVH 80 (129)
Q Consensus 47 ~P~vng~lHi-GH~~~~v~~D~~~R~~~~~G~~V~ 80 (129)
||.+.+.-.- .+..+...-++.++|++.+||+++
T Consensus 3 ~~~~~~~~~~~~~~~G~~gE~~A~~~L~~~Gy~Il 37 (128)
T PRK14679 3 PPADPAARRRATHGRGLSAEGLALLALMLKGYRPL 37 (128)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 4555554332 255667778899999999999986
No 166
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=21.41 E-value=63 Score=19.08 Aligned_cols=13 Identities=23% Similarity=-0.013 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCce
Q psy14678 67 ITLRSNLLQGKRV 79 (129)
Q Consensus 67 ~~~R~~~~~G~~V 79 (129)
++.||+|++.++|
T Consensus 33 ~llRFLRARkf~v 45 (55)
T PF03765_consen 33 FLLRFLRARKFDV 45 (55)
T ss_dssp HHHHHHHHTTT-H
T ss_pred HHHHHHHHccCCH
Confidence 7899999999887
No 167
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=21.23 E-value=1.2e+02 Score=19.74 Aligned_cols=36 Identities=19% Similarity=0.071 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhc
Q psy14678 61 NKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK 100 (129)
Q Consensus 61 ~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l 100 (129)
+.-..+.+.|. ...|....-+|..|.++..++.+.|
T Consensus 34 ~~~~~~~l~~~----~~~VIiltD~D~aG~~i~~~~~~~l 69 (81)
T cd01027 34 NKETIELIKKA----YRGVIILTDPDRKGEKIRKKLSEYL 69 (81)
T ss_pred CHHHHHHHHHh----CCEEEEEECCCHHHHHHHHHHHHHh
Confidence 33456666665 6789999999999999999888875
No 168
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=21.14 E-value=1.5e+02 Score=23.66 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=39.6
Q ss_pred cchhhhHHHHHHhcC---CCCcEEEEcCCCCCCCc-CCch--HHHHHHHHHHHHHHHH---hcCCceEEeCCCCcCCchH
Q psy14678 22 CGFSELYSWQREALN---GKPEFILHDGPPYANGT-PHIG--HAVNKILKDITLRSNL---LQGKRVHYVPGWDCHGLPI 92 (129)
Q Consensus 22 ~~~~~~~~w~~~~~~---~~~~~~i~~~~P~vng~-lHiG--H~~~~v~~D~~~R~~~---~~G~~V~~~~G~D~~G~ki 92 (129)
-.+..||.-.+.... ...+++++..||+.+.. ---| |+-+..+.+++.+++= ..|+ +.-..|.|..|..+
T Consensus 119 ~~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GH-IHEs~G~d~iG~Ti 197 (226)
T COG2129 119 FSEDEIYSKLKSLVKKADNPVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGH-IHESRGIDKIGNTI 197 (226)
T ss_pred cCHHHHHHHHHHHHhcccCcceEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEee-ecccccccccCCeE
Confidence 446677744443311 11227888888875332 1234 6667788888988863 2343 22356777766544
No 169
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=21.12 E-value=38 Score=27.39 Aligned_cols=46 Identities=33% Similarity=0.382 Sum_probs=25.9
Q ss_pred CCCCCcCC-chHHHHHHHHHHHHHH----HHhcCCceE---EeCCCCcCCchHH
Q psy14678 48 PYANGTPH-IGHAVNKILKDITLRS----NLLQGKRVH---YVPGWDCHGLPIE 93 (129)
Q Consensus 48 P~vng~lH-iGH~~~~v~~D~~~R~----~~~~G~~V~---~~~G~D~~G~ki~ 93 (129)
|.|.|..| +|=++-...=.+..|| +..+||-|. |..|+||...+.+
T Consensus 14 ~~P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A~~ 67 (250)
T PF07082_consen 14 PRPKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIARE 67 (250)
T ss_pred CCCCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHHHH
Confidence 57788888 5554432222222222 334688765 6778888655443
No 170
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=20.83 E-value=1.3e+02 Score=27.11 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=25.6
Q ss_pred EeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHH
Q psy14678 81 YVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGL 114 (129)
Q Consensus 81 ~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~ 114 (129)
.+.|||+-..++.....+. |.+|+.+..++.
T Consensus 352 ~~~gWDDpr~~Tl~~lrrr---G~~PeAi~~fl~ 382 (567)
T PRK04156 352 EYSGWDDPRLPTLRALRRR---GILPEAIRELII 382 (567)
T ss_pred ccccccCCchHHHHHHHHc---CCCHHHHHHHHH
Confidence 3568999999998888888 999999877653
No 171
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=20.75 E-value=3.9e+02 Score=20.42 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCceEEeCCCCcCCch
Q psy14678 65 KDITLRSNLLQGKRVHYVPGWDCHGLP 91 (129)
Q Consensus 65 ~D~~~R~~~~~G~~V~~~~G~D~~G~k 91 (129)
..-..+.++.+|-+|+...|..+.|..
T Consensus 53 ~~~~i~~l~~kG~KVl~sigg~~~~~~ 79 (255)
T cd06542 53 KETYIRPLQAKGTKVLLSILGNHLGAG 79 (255)
T ss_pred HHHHHHHHhhCCCEEEEEECCCCCCCC
Confidence 334556678899999987776655543
No 172
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=20.37 E-value=1.3e+02 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=23.8
Q ss_pred EeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHH
Q psy14678 81 YVPGWDCHGLPIELKAITSKDKLLSPLDIRKKG 113 (129)
Q Consensus 81 ~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~ 113 (129)
++.|||+--+|+.....+. |.+|+++.+.+
T Consensus 302 ~v~GWdDprlpTi~glrRr---G~~peai~~f~ 331 (601)
T PTZ00402 302 VVDGWDDPRFPTVRALVRR---GLKMEALRQFV 331 (601)
T ss_pred cccccCCCccHhHHHHHHc---CCCHHHHHHHH
Confidence 3469999999997777777 99999987653
No 173
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=20.01 E-value=55 Score=19.38 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCceEEeCCCC
Q psy14678 65 KDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 65 ~D~~~R~~~~~G~~V~~~~G~D 86 (129)
..+-.|.++..|++|..++-++
T Consensus 20 t~lk~r~L~~~G~~Vi~Ip~~e 41 (58)
T PF08373_consen 20 TKLKHRHLKALGYKVISIPYYE 41 (58)
T ss_pred HHHHHHHHHHCCCEEEEecHHH
Confidence 4456788999999999888654
Done!