Query psy14678
Match_columns 129
No_of_seqs 172 out of 1293
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:52:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1f_A Methionyl-tRNA syntheta 99.9 1.4E-28 4.8E-33 208.6 8.0 88 37-127 7-95 (542)
2 4arc_A Leucine--tRNA ligase; l 99.9 2E-25 7E-30 200.5 12.8 110 4-127 29-139 (880)
3 1ffy_A Isoleucyl-tRNA syntheta 99.9 1.3E-25 4.3E-30 202.3 9.7 113 3-127 21-146 (917)
4 1gax_A Valrs, valyl-tRNA synth 99.9 2.9E-25 9.8E-30 199.1 10.2 111 5-127 12-136 (862)
5 1rqg_A Methionyl-tRNA syntheta 99.9 2.7E-25 9.1E-30 195.9 9.1 86 39-127 2-89 (722)
6 2v0c_A Aminoacyl-tRNA syntheta 99.9 1E-24 3.5E-29 195.7 11.6 111 4-127 8-119 (878)
7 1ile_A Ilers, isoleucyl-tRNA s 99.9 9.4E-25 3.2E-29 194.2 6.5 114 3-127 11-141 (821)
8 2x1l_A Methionyl-tRNA syntheta 99.9 3.9E-24 1.3E-28 181.1 9.8 88 37-127 10-98 (524)
9 1wz2_A Leucyl-tRNA synthetase; 99.9 3.3E-24 1.1E-28 193.7 9.8 116 3-127 7-144 (967)
10 2csx_A Methionyl-tRNA syntheta 99.9 2.2E-24 7.6E-29 181.6 7.1 87 38-127 4-91 (497)
11 2d5b_A Methionyl-tRNA syntheta 99.9 4.9E-24 1.7E-28 179.2 8.9 87 38-127 2-89 (500)
12 3h99_A Methionyl-tRNA syntheta 99.9 8.2E-24 2.8E-28 180.9 9.7 88 37-127 16-104 (560)
13 3kfl_A Methionyl-tRNA syntheta 99.9 6.3E-24 2.2E-28 182.3 7.9 89 36-127 23-112 (564)
14 1wkb_A Leucyl-tRNA synthetase; 99.9 1.8E-23 6.3E-28 185.3 10.7 116 3-127 7-144 (810)
15 4dlp_A Aminoacyl-tRNA syntheta 99.9 3.7E-23 1.3E-27 176.0 9.8 88 37-127 23-111 (536)
16 3tqo_A Cysteinyl-tRNA syntheta 99.8 8.9E-21 3.1E-25 160.5 10.2 87 38-127 23-110 (462)
17 3c8z_A Cysteinyl-tRNA syntheta 99.8 2.3E-20 8E-25 155.1 10.0 84 40-126 39-123 (414)
18 3sp1_A Cysteinyl-tRNA syntheta 99.8 9.7E-20 3.3E-24 155.5 7.9 85 40-127 42-137 (501)
19 1li5_A Cysrs, cysteinyl-tRNA s 99.8 5.1E-19 1.8E-23 149.1 10.1 83 40-127 24-107 (461)
20 2zue_A Arginyl-tRNA synthetase 99.6 1.6E-15 5.5E-20 132.1 9.9 77 4-91 95-171 (629)
21 1irx_A Lysyl-tRNA synthetase; 99.5 5.3E-15 1.8E-19 125.9 3.7 86 41-127 21-122 (523)
22 1f7u_A Arginyl-tRNA synthetase 99.5 9.6E-14 3.3E-18 120.6 10.5 74 8-92 123-196 (607)
23 1iq0_A Arginyl-tRNA synthetase 99.4 6.2E-13 2.1E-17 114.9 9.0 87 40-127 104-234 (592)
24 3fnr_A Arginyl-tRNA synthetase 99.3 3.5E-12 1.2E-16 107.8 8.4 79 3-93 6-84 (464)
25 1nzj_A Hypothetical protein YA 98.0 3.1E-06 1.1E-10 67.8 3.1 43 44-91 8-50 (298)
26 3aii_A Glutamyl-tRNA synthetas 97.9 5.1E-06 1.8E-10 71.7 2.7 45 42-91 97-141 (553)
27 3al0_C Glutamyl-tRNA(Gln) amid 97.8 2E-05 6.9E-10 68.4 5.4 67 3-86 106-172 (592)
28 1qtq_A GLNRS, protein (glutami 97.7 4E-05 1.4E-09 66.2 5.3 44 42-90 27-70 (553)
29 2o5r_A Glutamyl-tRNA synthetas 97.6 3.6E-05 1.2E-09 65.2 3.9 46 39-86 11-56 (481)
30 2hz7_A Glutaminyl-tRNA synthet 97.6 2.4E-05 8.4E-10 70.4 2.8 45 42-91 67-111 (851)
31 2cfo_A Glutamyl-tRNA synthetas 97.4 0.00011 3.8E-09 62.4 4.3 40 46-90 6-45 (492)
32 4g6z_A Glutamate-tRNA ligase; 97.2 0.00022 7.5E-09 60.7 3.8 44 41-90 26-69 (490)
33 3foc_A Tryptophanyl-tRNA synth 97.0 0.0055 1.9E-07 51.7 10.0 100 11-127 66-166 (451)
34 3hzr_A Tryptophanyl-tRNA synth 96.8 0.0043 1.5E-07 51.3 8.3 99 11-127 57-155 (386)
35 3jxe_A Tryptophanyl-tRNA synth 96.5 0.0057 2E-07 50.6 7.0 99 11-127 48-147 (392)
36 1jil_A Tyrrs, tyrosyl-tRNA syn 96.5 0.0055 1.9E-07 51.0 6.8 104 7-123 4-110 (420)
37 3tzl_A Tryptophanyl-tRNA synth 96.3 0.0024 8.1E-08 51.4 3.5 63 50-127 12-74 (322)
38 2cyb_A Tyrosyl-tRNA synthetase 96.3 0.014 4.9E-07 46.5 8.1 97 11-127 8-104 (323)
39 3i05_A Tryptophanyl-tRNA synth 96.3 0.021 7.2E-07 47.2 9.2 99 11-127 53-152 (395)
40 4gri_A Glutamate--tRNA ligase; 96.3 0.002 6.8E-08 54.8 3.1 25 47-71 30-54 (512)
41 3tze_A Tryptophanyl-tRNA synth 96.3 0.013 4.4E-07 48.7 7.7 99 11-127 76-175 (406)
42 2j5b_A Tyrosyl-tRNA synthetase 96.2 0.037 1.3E-06 44.8 9.9 100 11-127 16-115 (348)
43 2cya_A Tyrosyl-tRNA synthetase 96.2 0.05 1.7E-06 44.3 10.7 99 11-127 11-109 (364)
44 1j09_A Glutamyl-tRNA synthetas 96.2 0.0036 1.2E-07 52.8 3.8 25 47-71 7-31 (468)
45 3a04_A Tryptophanyl-tRNA synth 96.1 0.0052 1.8E-07 50.4 4.7 97 13-127 47-143 (372)
46 2ts1_A Tyrosyl-tRNA synthetase 96.1 0.011 3.6E-07 49.4 6.2 102 8-122 3-107 (419)
47 3hv0_A Tryptophanyl-tRNA synth 95.9 0.04 1.4E-06 45.5 9.1 100 11-127 49-149 (393)
48 2pid_A Tyrosyl-tRNA synthetase 95.9 0.0061 2.1E-07 49.7 4.0 108 6-123 9-124 (356)
49 2ip1_A Tryptophanyl-tRNA synth 95.9 0.06 2E-06 45.0 10.1 100 11-127 77-177 (432)
50 2zp1_A Tyrosyl-tRNA synthetase 95.7 0.041 1.4E-06 43.9 8.0 72 40-126 28-99 (314)
51 3afh_A Glutamyl-tRNA synthetas 95.7 0.0055 1.9E-07 52.0 3.0 41 44-89 28-68 (488)
52 2el7_A Tryptophanyl-tRNA synth 95.6 0.015 5E-07 47.0 5.1 66 50-127 10-76 (337)
53 3vgj_A Tyrosyl-tRNA synthetase 95.6 0.026 9E-07 46.2 6.6 75 39-127 56-131 (373)
54 2cyc_A Tyrosyl-tRNA synthetase 95.6 0.067 2.3E-06 43.7 9.0 101 11-127 8-113 (375)
55 2yxn_A Tyrosyl-tRNA synthetase 95.6 0.034 1.2E-06 44.5 7.0 102 7-121 5-109 (322)
56 1r6u_A Tryptophanyl-tRNA synth 95.6 0.12 4.1E-06 43.2 10.6 99 11-127 83-182 (437)
57 3p0j_A Tyrosyl-tRNA synthetase 95.4 0.022 7.6E-07 50.2 5.9 76 40-127 40-115 (690)
58 1i6k_A TRPRS, tryptophanyl-tRN 95.3 0.029 9.9E-07 45.1 5.9 63 50-127 10-72 (328)
59 2ja2_A Glutamyl-tRNA synthetas 95.2 0.015 5.1E-07 49.5 4.0 38 47-86 12-49 (498)
60 2jan_A Tyrosyl-tRNA synthetase 95.1 0.0089 3.1E-07 50.0 2.2 99 7-119 4-105 (432)
61 1r6t_A Tryptophanyl-tRNA synth 95.0 0.092 3.1E-06 44.4 8.4 99 11-127 130-229 (477)
62 2g36_A Tryptophanyl-tRNA synth 94.9 0.038 1.3E-06 44.7 5.5 74 39-127 12-85 (340)
63 3prh_A Tryptophanyl-tRNA synth 94.7 0.021 7.3E-07 47.2 3.5 73 39-127 30-106 (388)
64 1y42_X Tyrosyl-tRNA synthetase 94.6 0.059 2E-06 44.4 6.0 102 8-122 36-141 (392)
65 3sz3_A Tryptophanyl-tRNA synth 94.4 0.021 7.1E-07 46.4 2.8 63 50-127 15-77 (341)
66 2yy5_A Tryptophanyl-tRNA synth 94.4 0.022 7.4E-07 46.2 2.8 71 40-127 5-75 (348)
67 1yi8_B Tryptophanyl-tRNA synth 94.2 0.049 1.7E-06 44.2 4.5 73 39-127 22-94 (351)
68 2dlc_X Tyrosyl-tRNA synthetase 93.9 0.11 3.8E-06 42.6 6.2 65 11-84 14-78 (394)
69 1h3f_A Tyrosyl-tRNA synthetase 93.4 0.15 5.1E-06 42.5 6.2 96 12-120 14-112 (432)
70 3n9i_A Tryptophanyl-tRNA synth 93.1 0.05 1.7E-06 44.3 2.8 71 39-127 15-86 (346)
71 1n3l_A Tyrosyl-tRNA synthetase 91.7 0.14 4.9E-06 41.7 3.9 38 42-84 37-74 (372)
72 3p0j_A Tyrosyl-tRNA synthetase 91.3 0.47 1.6E-05 41.8 6.9 67 50-126 390-457 (690)
73 2k53_A A3DK08 protein; NESG, C 48.1 20 0.00068 22.4 3.5 26 89-117 38-63 (76)
74 3dvk_B Voltage-dependent R-typ 40.3 35 0.0012 16.9 3.0 19 55-73 2-21 (23)
75 2rq5_A Protein jumonji; develo 40.2 40 0.0014 23.0 4.3 71 52-126 1-76 (121)
76 2k5e_A Uncharacterized protein 38.4 25 0.00086 21.7 2.8 24 90-116 41-64 (73)
77 2yxb_A Coenzyme B12-dependent 32.1 65 0.0022 22.4 4.5 51 37-99 17-68 (161)
78 2lnd_A De novo designed protei 29.1 1.2E+02 0.0042 19.8 5.6 60 64-124 40-106 (112)
79 1qjc_A Phosphopantetheine aden 22.0 59 0.002 21.8 2.6 9 52-60 11-19 (158)
80 2i2x_B MTAC, methyltransferase 21.1 1.9E+02 0.0065 21.5 5.6 50 38-99 123-173 (258)
81 4edg_A DNA primase; catalytic 21.1 1.5E+02 0.005 23.4 5.1 64 52-119 175-252 (329)
No 1
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.95 E-value=1.4e-28 Score=208.65 Aligned_cols=88 Identities=25% Similarity=0.371 Sum_probs=85.1
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
.+++|+|++|+|||||.|||||+++++++|+++||+||+|++|+|++|+||||+||+.+|+++ |++|+|++ ++...
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~---g~~~~e~~~~~~~~ 83 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK---QVSPYDFTTAVAGE 83 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHT---TSCHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999 99999997 78999
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|++++++|||+.
T Consensus 84 ~~~~~~~lgi~~ 95 (542)
T 3u1f_A 84 FKKCFEQMDYSI 95 (542)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHhCCcc
Confidence 999999999974
No 2
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.92 E-value=2e-25 Score=200.45 Aligned_cols=110 Identities=23% Similarity=0.266 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
.++.-||+.|++...|.... ..++++|++++|||||||.|||||+++++++|+++||+||+|++|+|++
T Consensus 29 ~iE~kw~~~W~~~~~f~~~~-----------~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~ 97 (880)
T 4arc_A 29 EIESKVQLHWDEKRTFEVTE-----------DESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPI 97 (880)
T ss_dssp HHHHHHHHHHHHTTTTCCCC-----------CTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCC
T ss_pred HHHHHHHHHHHhcCCcccCC-----------cCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEec
Confidence 56777888888888776543 2357899999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
|||+||+||+.+|+++ |++|.+++ ++...+++++++||++.
T Consensus 98 G~D~~Glpie~~a~~~---g~~p~~~~~~~i~~~~~~l~~LGis~ 139 (880)
T 4arc_A 98 GWDAFGLPAEGAAVKN---NTAPAPWTYDNIAYMKNQLKMLGFGY 139 (880)
T ss_dssp EECCCSTHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CccccCcHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999998 99999997 77999999999999986
No 3
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.92 E-value=1.3e-25 Score=202.35 Aligned_cols=113 Identities=39% Similarity=0.571 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
.-++.-+|+.|++...|.. ......++++|++++|||||||.|||||+++++++|+++||+||+|++|.|+
T Consensus 21 ~~~E~~~~~~W~~~~~f~~---------~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~ 91 (917)
T 1ffy_A 21 PNKEPQIQEKWDAEDQYHK---------ALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYV 91 (917)
T ss_dssp HHHHHHHHHHHHHTTHHHH---------HHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCC
T ss_pred HHHhHHHHHHHHHCCCccc---------chhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 3456667777776655532 2221236789999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcCCCCC-----HHHHHHH--------HHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKDKLLS-----PLDIRKK--------GLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~~~~~-----p~e~~~~--------~~~~~~~~~~L~i~~ 127 (129)
+||||||+|||.+|+++ |.+ +++|.+. ...+++.+++||++.
T Consensus 92 ~GwD~hGlpiE~~a~k~---G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~ 146 (917)
T 1ffy_A 92 PGWDTHGLPIEQALTKK---GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRG 146 (917)
T ss_dssp CEEBCCSHHHHHHHHHH---TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred ccCchhhHHHHHHHHHc---CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEE
Confidence 99999999999999998 655 5666544 455678889999874
No 4
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.92 E-value=2.9e-25 Score=199.06 Aligned_cols=111 Identities=19% Similarity=0.316 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCC
Q psy14678 5 ISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84 (129)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G 84 (129)
++.-+|+.|++ ..|.... ..++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|
T Consensus 12 ~E~~~~~~W~~-~~f~~~~-----------~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G 79 (862)
T 1gax_A 12 VEPKWAEKWAK-NPFVANP-----------KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPG 79 (862)
T ss_dssp THHHHHHHHHH-SCCCCCT-----------TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECE
T ss_pred HHHHHHHHHHh-CCCccCc-----------CCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccc
Confidence 44555666665 5554332 23568899999999999999999999999999999999999999999999
Q ss_pred CCcCCchHHHHHHHhc-CCCCC-----HHHHHH--------HHHHHHHHhhccCCcc
Q psy14678 85 WDCHGLPIELKAITSK-DKLLS-----PLDIRK--------KGLHLPRLEASLLVTI 127 (129)
Q Consensus 85 ~D~~G~ki~~~a~k~l-~~~~~-----p~e~~~--------~~~~~~~~~~~L~i~~ 127 (129)
|||||+|+|.++++++ ..|++ +++|.+ +...+++.+++||++.
T Consensus 80 ~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~ 136 (862)
T 1gax_A 80 TDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASA 136 (862)
T ss_dssp EBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999876 23544 445543 4567778889999875
No 5
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.92 E-value=2.7e-25 Score=195.87 Aligned_cols=86 Identities=28% Similarity=0.419 Sum_probs=83.3
Q ss_pred CcEEEEcCCCCCCCcCCchHHHH-HHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVN-KILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHL 116 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~-~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~ 116 (129)
++|+|++|||||||.|||||+++ ++++|+++||+||+|++|.|++|||+||+||+.+|+++ |++|++++ ++...|
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~---G~~p~e~~~~~~~~~ 78 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE---GRSPREIVDEFHEQI 78 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TCCHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 67999999999999999999999 99999999999999999999999999999999999999 99999997 789999
Q ss_pred HHHhhccCCcc
Q psy14678 117 PRLEASLLVTI 127 (129)
Q Consensus 117 ~~~~~~L~i~~ 127 (129)
++++++|||+.
T Consensus 79 ~~~~~~lgis~ 89 (722)
T 1rqg_A 79 KITFQRAKISF 89 (722)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHhCCCC
Confidence 99999999975
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.91 E-value=1e-24 Score=195.67 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
.++.-||+.|++...|.... ...++++|+++++||||||.|||||+++++++|+++||+||+|++|.|++
T Consensus 8 ~iE~kw~~~W~~~~~f~~~~----------~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~ 77 (878)
T 2v0c_A 8 AIEAKWQRFWEEKGFMKAKD----------LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPM 77 (878)
T ss_dssp THHHHHHHHHHHHTTTCCCS----------CCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCC
T ss_pred HHHHHHHHHHHHcCCcccCc----------ccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeec
Confidence 35667777777777775321 01245679999999999999999999999999999999999999999999
Q ss_pred CCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 84 GWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 84 G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
|||+||+||+.+|+++ |++|.+++ ++...|++++++||++.
T Consensus 78 G~D~~Glpie~~a~k~---g~~~~~~~~~~~~~~~~~~~~LGi~~ 119 (878)
T 2v0c_A 78 GWDAFGLPAENAALKF---GVHPKDWTYANIRQAKESLRLMGILY 119 (878)
T ss_dssp CBCCSSHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCcccHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999998 99999997 77999999999999975
No 7
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.90 E-value=9.4e-25 Score=194.22 Aligned_cols=114 Identities=25% Similarity=0.414 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
..++.-+|..|++...|... .....++++|++++|||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 11 ~~~E~~~~~~W~~~~~f~~~---------~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~ 81 (821)
T 1ile_A 11 PKLEEEVLAFWKREKIFQKS---------VENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRR 81 (821)
T ss_dssp HHHHHHHHHHHHHTTHHHHH---------HHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCE
T ss_pred HHHHHHHHHHHHHCCCcccC---------hhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccc
Confidence 45677788888777766432 111236789999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcCCCCC---------HHHHH--------HHHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKDKLLS---------PLDIR--------KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~~~~~---------p~e~~--------~~~~~~~~~~~~L~i~~ 127 (129)
+|||+||+|||.+|++++ |.+ +++|. +....+++.+++||+++
T Consensus 82 ~G~D~~Glpie~~a~k~l--~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~ 141 (821)
T 1ile_A 82 AGWDTHGLPVELEVEKKL--GLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWV 141 (821)
T ss_dssp EEECCCHHHHHHHHHHHT--TCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCC
T ss_pred ccccCCCchHHHHHHHHh--cccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeE
Confidence 999999999999999975 443 33333 33566777888898653
No 8
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.90 E-value=3.9e-24 Score=181.10 Aligned_cols=88 Identities=30% Similarity=0.491 Sum_probs=84.2
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
+++.|++++|+|||||.|||||+++++++|+++||++++|++|.+++|+|+||+||+.+|+++ |.+|++++ ++..+
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~~~~~~~~~ 86 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE---GIPAAELARRNSDV 86 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHHHHHHHHHH
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999 99999997 67999
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|+++++.|||+.
T Consensus 87 ~~~~~~~lgi~~ 98 (524)
T 2x1l_A 87 FQRLQEKLNISF 98 (524)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHcCCcC
Confidence 999999999975
No 9
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.90 E-value=3.3e-24 Score=193.70 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
..++.-+|+.|++...|..... ...++++|++++|||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 7 ~~iE~~~~~~W~~~~~f~~~~~---------~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~ 77 (967)
T 1wz2_A 7 KAIEEKWQKRWLEAKIFEPNIR---------DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (967)
T ss_dssp HHHHHHHHHHHHHHTTTSCCGG---------GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCC
T ss_pred HHHHHHHHHHHHhCCCcccCcc---------ccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCC
Confidence 3567788888888888865430 0113378999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhcC------------CCC---------CHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSKD------------KLL---------SPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l~------------~~~---------~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
+|||+||+||+.+|++... .|+ ++.+++ ++...+++.+++||++.
T Consensus 78 ~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 144 (967)
T 1wz2_A 78 MAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSV 144 (967)
T ss_dssp CCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceE
Confidence 9999999999999875310 133 455664 56788999999999975
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.90 E-value=2.2e-24 Score=181.57 Aligned_cols=87 Identities=29% Similarity=0.390 Sum_probs=83.7
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHH
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHL 116 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~ 116 (129)
+++|+|++|+|||||.|||||+++++++|+++||++++|++|.+++|+|+||+||+.+|+++ |.+|++++ ++...|
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~~~~~~~~~~ 80 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL---GISPKELVDRNAERF 80 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHS---SSCHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999998 99999997 789999
Q ss_pred HHHhhccCCcc
Q psy14678 117 PRLEASLLVTI 127 (129)
Q Consensus 117 ~~~~~~L~i~~ 127 (129)
+++++.|||+.
T Consensus 81 ~~~~~~lgi~~ 91 (497)
T 2csx_A 81 KKLWEFLKIEY 91 (497)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHhCCcC
Confidence 99999999974
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.90 E-value=4.9e-24 Score=179.24 Aligned_cols=87 Identities=24% Similarity=0.315 Sum_probs=83.5
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHH
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHL 116 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~ 116 (129)
+++|+|++|+|||||.+||||+++++++|+++||++++|++|.+++|+|+||+||+.+|+++ |++|.+++ ++...|
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~~~~~~~~~~ 78 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA---GEDPKAFVDRVSGRF 78 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999 99999997 679999
Q ss_pred HHHhhccCCcc
Q psy14678 117 PRLEASLLVTI 127 (129)
Q Consensus 117 ~~~~~~L~i~~ 127 (129)
+++++.|||+.
T Consensus 79 ~~~~~~lgi~~ 89 (500)
T 2d5b_A 79 KRAWDLLGIAY 89 (500)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHhCCcC
Confidence 99999999975
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.90 E-value=8.2e-24 Score=180.87 Aligned_cols=88 Identities=26% Similarity=0.415 Sum_probs=84.4
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
++++|+|++|||||||.|||||+++++++|+++||++++|++|.|++|+|+||+||+.+|+++ |++|++++ ++...
T Consensus 16 ~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~~~~~~~~~ 92 (560)
T 3h99_A 16 VAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPEQMIGEMSQE 92 (560)
T ss_dssp -CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TSCHHHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999 99999997 77999
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|+++++.|||+.
T Consensus 93 ~~~~~~~lgi~~ 104 (560)
T 3h99_A 93 HQTDFAGFNISY 104 (560)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHcCCCC
Confidence 999999999975
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.89 E-value=6.3e-24 Score=182.28 Aligned_cols=89 Identities=22% Similarity=0.351 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHH
Q psy14678 36 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGL 114 (129)
Q Consensus 36 ~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~ 114 (129)
.++++|+|++|+|||||.|||||+++++++|+++||+|++|++|.+++|+|+||+||+.+|+++ |++|++++ ++..
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~---g~~p~~~~~~~~~ 99 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ---GVSPMDFTTSVSS 99 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT---TCCHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc---CCCHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999 99999997 7899
Q ss_pred HHHHHhhccCCcc
Q psy14678 115 HLPRLEASLLVTI 127 (129)
Q Consensus 115 ~~~~~~~~L~i~~ 127 (129)
.|+++++.|||+.
T Consensus 100 ~~~~~~~~lgi~~ 112 (564)
T 3kfl_A 100 EFKQCFQEMNYDM 112 (564)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999985
No 14
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.8e-23 Score=185.32 Aligned_cols=116 Identities=20% Similarity=0.182 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
..++.-+|+.|++...|..... . ..++++|+|++|||||||.|||||+++++++|+++||+||+|++|.|+
T Consensus 7 ~~~E~~~~~~W~~~~~f~~~~~--------~-~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~ 77 (810)
T 1wkb_A 7 KAIEEKWQKRWLEAKIFEPNIR--------D-KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (810)
T ss_dssp HHHHHHHHHHHHHTTTTCCCGG--------G-SCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred HHHHHHHHHHHHhCCCcccCch--------h-cCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcC
Confidence 3578889999998888875430 0 114678999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHHHHHHHhc---------------------CCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 83 PGWDCHGLPIELKAITSK---------------------DKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 83 ~G~D~~G~ki~~~a~k~l---------------------~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
+|||+||+||+..|++.. ....++.+++ ++...+++.+++||++.
T Consensus 78 ~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~ 144 (810)
T 1wkb_A 78 MAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSV 144 (810)
T ss_dssp CCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEE
Confidence 999999999999887521 0124567775 56889999999999975
No 15
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.89 E-value=3.7e-23 Score=176.00 Aligned_cols=88 Identities=27% Similarity=0.445 Sum_probs=83.9
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHH
Q psy14678 37 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLH 115 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~ 115 (129)
++++|+|++|+|||||.|||||+|+++++|+++||++++|++|.+++|+|+||+||+.+|+++ |.+|++++ ++...
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~---g~~~~~~~~~~~~~ 99 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE---GITPRDLADRNTSA 99 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999 99999997 78999
Q ss_pred HHHHhhccCCcc
Q psy14678 116 LPRLEASLLVTI 127 (129)
Q Consensus 116 ~~~~~~~L~i~~ 127 (129)
|+++++.|||+.
T Consensus 100 ~~~~l~~lgi~~ 111 (536)
T 4dlp_A 100 FRRMAEVLNSSN 111 (536)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHcCCCC
Confidence 999999999975
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.83 E-value=8.9e-21 Score=160.49 Aligned_cols=87 Identities=22% Similarity=0.092 Sum_probs=80.9
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHH
Q psy14678 38 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHL 116 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~ 116 (129)
.++..+....|||||.+||||+|+++++|+++||++++||+|.|++|+||||+||+.+|+++ |.++++++ ++...|
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~---g~~~~e~a~~~~~~f 99 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGEN---KESPAALAERFIQIL 99 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHT---TSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34566666778999999999999999999999999999999999999999999999999999 99999997 789999
Q ss_pred HHHhhccCCcc
Q psy14678 117 PRLEASLLVTI 127 (129)
Q Consensus 117 ~~~~~~L~i~~ 127 (129)
.+++++|||+.
T Consensus 100 ~~d~~~LgI~~ 110 (462)
T 3tqo_A 100 HEDEKALRVLS 110 (462)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999999985
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.82 E-value=2.3e-20 Score=155.08 Aligned_cols=84 Identities=19% Similarity=0.100 Sum_probs=77.7
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPR 118 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~ 118 (129)
+..+....|||||.+||||+|+++++|+++||++++|++|.|++|+|+||+||+.+|+++ |+++.+++ ++...|++
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~---g~~~~~~~~~~~~~~~~ 115 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERD---GIDWRTLGDRETQLFRE 115 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHH---TCCHHHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 344445568889999999999999999999999999999999999999999999999999 99999997 67999999
Q ss_pred HhhccCCc
Q psy14678 119 LEASLLVT 126 (129)
Q Consensus 119 ~~~~L~i~ 126 (129)
+++.|||+
T Consensus 116 ~~~~Lgi~ 123 (414)
T 3c8z_A 116 DMAALRVL 123 (414)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCC
Confidence 99999998
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.79 E-value=9.7e-20 Score=155.46 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=62.4
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCC----------CcCCchHHHHHHHhcCCCCCHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW----------DCHGLPIELKAITSKDKLLSPLDI 109 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~----------D~~G~ki~~~a~k~l~~~~~p~e~ 109 (129)
+.-+...+|||||.+||||+++++++|+++||++++||+|.|++|+ |+||+||+.+|+++ |++|+++
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~---g~~~~e~ 118 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREK---GLTVYEI 118 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------CCHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHc---CCCHHHH
Confidence 3344455688889999999999999999999999999999999765 55699999999999 9999999
Q ss_pred H-HHHHHHHHHhhccCCcc
Q psy14678 110 R-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 110 ~-~~~~~~~~~~~~L~i~~ 127 (129)
+ +++..|++++++|||+.
T Consensus 119 a~~~~~~f~~d~~~Lgi~~ 137 (501)
T 3sp1_A 119 SEFFTEAFFNDCRKLNIVY 137 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 7 78999999999999975
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.78 E-value=5.1e-19 Score=149.13 Aligned_cols=83 Identities=16% Similarity=0.035 Sum_probs=77.0
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHH-HHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR-KKGLHLPR 118 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~-~~~~~~~~ 118 (129)
++++| .|+|||.+||||+|+++++|+++||+++.|++|.|++|+|++|+||+.+|+++ |.+|++++ .+...|++
T Consensus 24 ~~yv~--gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~---g~~~~~~~~~~~~~f~~ 98 (461)
T 1li5_A 24 GMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN---GESFVAMVDRMIAEMHK 98 (461)
T ss_dssp EEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT---TCCHHHHHHHHHHHHHH
T ss_pred eEEEc--CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 45555 56777999999999999999999999999999999999999999999999999 99999997 77999999
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
+++.|||+.
T Consensus 99 ~~~~LgI~~ 107 (461)
T 1li5_A 99 DFDALNILR 107 (461)
T ss_dssp HHHHTTCCC
T ss_pred HHHHcCCCC
Confidence 999999985
No 20
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.61 E-value=1.6e-15 Score=132.09 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeC
Q psy14678 4 YISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~ 83 (129)
+...+++.+++.++.|+... ...+++..|...+|||||++||||+|+.+++|+++|+++..||+|.++.
T Consensus 95 ~~~~~~~~i~~~~~~yG~~~-----------~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~ 163 (629)
T 2zue_A 95 FARILINDILAKGDRFGSSE-----------IGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQN 163 (629)
T ss_dssp HHHHHHHHHHHHGGGTTCCC-----------TTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhcchhcCCCc-----------cCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEe
Confidence 45566666777776676543 2356789999999999999999999999999999999999999999999
Q ss_pred CCCcCCch
Q psy14678 84 GWDCHGLP 91 (129)
Q Consensus 84 G~D~~G~k 91 (129)
+++|+|..
T Consensus 164 ~i~D~G~Q 171 (629)
T 2zue_A 164 YIDDLGIQ 171 (629)
T ss_dssp EECTTSHH
T ss_pred cccchhHH
Confidence 88888665
No 21
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.51 E-value=5.3e-15 Score=125.88 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC--chH---HHHHHHhcCCCCCH---------
Q psy14678 41 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG--LPI---ELKAITSKDKLLSP--------- 106 (129)
Q Consensus 41 ~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G--~ki---~~~a~k~l~~~~~p--------- 106 (129)
.+++.+.|||||.|||||+|+.++.|+++||++++|++|.|+.++||+| .+| ..+|.++. -|+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~-~G~~~~~~p~p~~~ 99 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDY-LGMPISEVPDPWGC 99 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGG-TTSBGGGSCCTTSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHH-cCCCcccCCcchhh
Confidence 4556556999999999999999999999999999999999999999999 766 33333321 16676
Q ss_pred -HHHH-HHHHHHHHHhhccCCcc
Q psy14678 107 -LDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 107 -~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
++++ .+...|.++++.|||+.
T Consensus 100 ~~~~~~~~~~~~~~~l~~Lgi~~ 122 (523)
T 1irx_A 100 HESYAEHFMRKFEEEVEKLGIEV 122 (523)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCc
Confidence 7786 67999999999999974
No 22
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.49 E-value=9.6e-14 Score=120.65 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=60.7
Q ss_pred HHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc
Q psy14678 8 YLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC 87 (129)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~ 87 (129)
+++.+++.++.|+... ...+++.+|...+|||+|++|+||+|+.+++|+++|+++..||+|.++..++|
T Consensus 123 ~~~~i~~~~~~~G~~~-----------~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D 191 (607)
T 1f7u_A 123 VIPDILTRKEDYGSCK-----------LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGD 191 (607)
T ss_dssp HHHHHHHHGGGTTCCC-----------CSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBC
T ss_pred HHHHHHhhhhhcCCCc-----------ccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecC
Confidence 4555555555555432 23567899999999999999999999999999999999999999999999988
Q ss_pred CCchH
Q psy14678 88 HGLPI 92 (129)
Q Consensus 88 ~G~ki 92 (129)
+|..+
T Consensus 192 ~G~Q~ 196 (607)
T 1f7u_A 192 WGKQF 196 (607)
T ss_dssp CSHHH
T ss_pred cchHH
Confidence 76654
No 23
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.40 E-value=6.2e-13 Score=114.88 Aligned_cols=87 Identities=16% Similarity=0.026 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchH---------------------------
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI--------------------------- 92 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki--------------------------- 92 (129)
+..|....|||||++||||+|+.+++|+++|++++.||+|.++..++|.|..+
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 67999999999999999999999999999999999999999987666665221
Q ss_pred -HHH------------HHH---hcCCCCCHHHHH-HHHHHHHHHhhccCCcc
Q psy14678 93 -ELK------------AIT---SKDKLLSPLDIR-KKGLHLPRLEASLLVTI 127 (129)
Q Consensus 93 -~~~------------a~k---~l~~~~~p~e~~-~~~~~~~~~~~~L~i~~ 127 (129)
... |.+ .++.|.. ++++ .....|+++++.|||+.
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~~-~~~~~~~~~~~~~~~~~LgI~~ 234 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGEL-REEVNRILLAQMATMHALNARY 234 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHcCCEe
Confidence 111 111 0112433 7776 67999999999999975
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.32 E-value=3.5e-12 Score=107.84 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
+++..+++++++.++.|+... . .+++.+|..++|||+|++|+||+|+.+++|+++|++++.|++|...
T Consensus 6 ~~~~~~l~~i~~~~~~yG~~~-----------~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~ 73 (464)
T 3fnr_A 6 TFLNELANQALTNPNDFTKGE-----------K-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTE 73 (464)
T ss_dssp HHHHHHHHHHHHSGGGTTCCC-----------C-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhHHhcCCCC-----------C-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEE
Confidence 578889999999999998765 4 6788999999999999999999999999999999999999999999
Q ss_pred CCCCcCCchHH
Q psy14678 83 PGWDCHGLPIE 93 (129)
Q Consensus 83 ~G~D~~G~ki~ 93 (129)
.-+.|.|..+-
T Consensus 74 nyi~D~G~Q~g 84 (464)
T 3fnr_A 74 YYVNDAGNQIY 84 (464)
T ss_dssp EEECCCHHHHH
T ss_pred eeeCCccHHHH
Confidence 88899998873
No 25
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.98 E-value=3.1e-06 Score=67.79 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.8
Q ss_pred EcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCch
Q psy14678 44 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP 91 (129)
Q Consensus 44 ~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~k 91 (129)
+==+|+|||.+||||+++.+ .+|+.++++.+.|+..+||.+.+
T Consensus 8 ~RFAPsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~ 50 (298)
T 1nzj_A 8 GRFAPSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP 50 (298)
T ss_dssp EEECCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG
T ss_pred EEECcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch
Confidence 33458999999999999997 56666666778888888887654
No 26
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.87 E-value=5.1e-06 Score=71.69 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=35.8
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCch
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP 91 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~k 91 (129)
+++-=+|+|||.+||||+++.++...++ +++.+.|+..+||.+.+
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~A-----r~~~G~~iLRieDtD~~ 141 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYA-----RKYDGRLILRIEDTDPR 141 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHH-----HHTTCEEEEEECCCCGG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHH-----HHcCCEEEEEECcCCcc
Confidence 4555569999999999999998754444 46788899999888764
No 27
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.81 E-value=2e-05 Score=68.38 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEe
Q psy14678 3 EYISLYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYV 82 (129)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~ 82 (129)
.++..++.++++.++.|+.. ..+++.+-.+ |+|||.+||||+++.++.+.++|. ..|.-++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi 168 (592)
T 3al0_C 106 MFITGAFFDILEVGPKKIRR--------------CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRI 168 (592)
T ss_dssp --------------CCCCCC--------------CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB
T ss_pred HHHHHHHHHHHHcChhhccc--------------CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe
Confidence 35667777777777777643 2245667777 999999999999999999999986 345444444
Q ss_pred CCCC
Q psy14678 83 PGWD 86 (129)
Q Consensus 83 ~G~D 86 (129)
--+|
T Consensus 169 eDtD 172 (592)
T 3al0_C 169 EDTD 172 (592)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 3333
No 28
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.68 E-value=4e-05 Score=66.19 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=34.2
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
+++-=+|+|||.|||||+++.++...++| ++...|+..+||...
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~ 70 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNP 70 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCc
Confidence 44555689999999999999988666665 566678888877765
No 29
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.61 E-value=3.6e-05 Score=65.24 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=36.4
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
-.++++--+|+|||.|||||+|+.++.|.++|. ..|.-|+.+--+|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD 56 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTD 56 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSS
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCC
Confidence 457778888999999999999999999999998 5676565555444
No 30
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.60 E-value=2.4e-05 Score=70.38 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=34.7
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCch
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP 91 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~k 91 (129)
+++==+|+|||.+||||+++.++...++| ++.+.|+..+||...+
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~ 111 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE 111 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc
Confidence 44544689999999999999988655555 5677888888887654
No 31
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.41 E-value=0.00011 Score=62.44 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 46 GPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 46 ~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
=+|+|||.+||||+++.++. |+..+++.+.|+.-+||.+.
T Consensus 6 FAPSPtG~lHiG~artal~n-----~l~Ar~~~G~filRieDtD~ 45 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFN-----WLYARHRGGKFILRIEDTDR 45 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCSS
T ss_pred eCCCCCCCccHHHHHHHHHH-----HHHHHhcCCeEEEEEeeCCc
Confidence 36899999999999999875 44445566777777777653
No 32
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.19 E-value=0.00022 Score=60.72 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=31.1
Q ss_pred EEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 41 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 41 ~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
+..-. .|.|||.+||||+++.++...++|. +...|+.-+||.+.
T Consensus 26 v~~RF-APSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~ 69 (490)
T 4g6z_A 26 VRTRF-APSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDV 69 (490)
T ss_dssp CEEEE-CCCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCG
T ss_pred ceEEe-CCCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCc
Confidence 43334 4889999999999999988777774 34455555555543
No 33
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=96.95 E-value=0.0055 Score=51.68 Aligned_cols=100 Identities=11% Similarity=-0.094 Sum_probs=62.0
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCC-CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vn-g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
.++.|+-.|+..+ +....+.-. .++++.+.++.= |+ |.+||||..+.. .+.++++.-|..|.+.. |
T Consensus 66 ~~l~RG~i~~~~d---l~~ll~~l~-~g~p~~vytG~d-PTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~I-----g 132 (451)
T 3foc_A 66 PMLRRGLFYAHRD---FEEFLSYYE-KGHPIYIYTGRG-PSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQI-----T 132 (451)
T ss_dssp HHHHTTSEEEEES---HHHHHHHHH-TTCCEEEEEEEC-CCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEE-----C
T ss_pred HHHhCCCcccccc---HHHHHHHHh-cCCCeEEEecCC-CCCCCccHHHHHHHH---HHHHHHHccCceEEEEe-----e
Confidence 5566666554333 333333322 445677776643 56 899999976654 23334444477777753 3
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
++ .....+. ..+++++.+.+..+.+.+.++|+++
T Consensus 133 D~-~a~~~r~---~lt~E~I~~n~~~~~~~~lA~GlDp 166 (451)
T 3foc_A 133 DD-EKFLRNR---SLSYAEVDSYTRENIKDIIACGFDP 166 (451)
T ss_dssp HH-HHHHHCT---TCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred Cc-HHhhccc---CCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 44 2222333 5799999999899999999988764
No 34
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=96.83 E-value=0.0043 Score=51.26 Aligned_cols=99 Identities=10% Similarity=-0.068 Sum_probs=60.7
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
.++.|+-.|+.. ++....+.-. .++++.+.++. -|+|.+||||..+.. ...++++.-|..|.++.+-++
T Consensus 57 ~~l~RG~i~~~~---d~~~ll~~~~-~~~~~~vysG~-~PTG~lHLGh~v~~~---~~~~lQ~~~g~~v~i~I~D~~--- 125 (386)
T 3hzr_A 57 HYLSRGVFLAEK---SLDKFLDDVE-AKKPTFIFIQK-YPQKEVALEEYITLE---FARYLQDAFNIQVIIQILDDI--- 125 (386)
T ss_dssp HHHHTTSEEEES---SHHHHHHHHH-TTCCEEEEEEE-CCCSSCBGGGHHHHH---HHHHHHHHHCCEEEEEECHHH---
T ss_pred HHHHCcCccccc---cHHHHHHHHh-cCCCeEEEecc-CCCCCccHHHHHHHH---HHHHHHHhcCCeEEEEeCchH---
Confidence 456666644432 3333433332 44566666653 368889999977652 233344445888887743221
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 91 PIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 91 ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
+..-. ..+++++.+.+.++...+.++|+++
T Consensus 126 ----a~~~r---~~~~e~i~~~~~~~~~~~lA~GlDp 155 (386)
T 3hzr_A 126 ----KVLNR---EATINEASKMSNDLMKYILAFGFNE 155 (386)
T ss_dssp ----HHHTT---SCCHHHHHHHHHHHHHHHHHTCCCG
T ss_pred ----HhhcC---CCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 11112 4789999988889999999988864
No 35
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=96.54 E-value=0.0057 Score=50.61 Aligned_cols=99 Identities=14% Similarity=0.017 Sum_probs=61.5
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHh-cCCceEEeCCCCcCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLL-QGKRVHYVPGWDCHG 89 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~-~G~~V~~~~G~D~~G 89 (129)
.+++|+-.|+.. ++....+.-. .++++.+.++.- |+|.+||||..+.. ..||++. .|++|.+..| |.|+
T Consensus 48 ~~~~Rg~i~~~~---d~~~l~~~~~-~~~p~~i~sG~~-PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia-D~ha 117 (392)
T 3jxe_A 48 IFFRRKFFFSHR---DYDLILKDYE-EGRGFFLYTGRG-PSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT-DDEK 117 (392)
T ss_dssp HHHHTTSEEEEE---SHHHHHHHHH-TTCCCEEEEEEC-CSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC-HHHH
T ss_pred HHHhCcCccccc---CHHHHHHHHh-cCCCeEEEeccC-CCCchhHHHHHHHH----HHHHHHHhcCCceEEEec-chHH
Confidence 556666644433 3333333322 334455554432 45999999988764 2344444 6999888776 4432
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
.- ... ..+++++.+.+..+...+.++|+++
T Consensus 118 ~~-----~~~---~~~~e~i~~~~~~~~~~~lA~GlDp 147 (392)
T 3jxe_A 118 FL-----FKE---NLTFDDTKRWAYDNILDIIAVGFDP 147 (392)
T ss_dssp HH-----HCS---SCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred hh-----cCC---CCCHHHHHHHHHHHHHHHHHhCcCc
Confidence 11 111 4789999988899999999988875
No 36
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.51 E-value=0.0055 Score=51.00 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCc-CCchHHHHHHHHHHHHHHHHhcCCceEEeCCC
Q psy14678 7 LYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 85 (129)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~-lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~ 85 (129)
.+++.+..++-.+...++..|....+. ++..+.+.-= |+|. +||||... --.+.++ +..|+++.+..|=
T Consensus 4 ~~~~~l~~Rg~~~~~~~~~~L~~~L~~----~~~~iy~G~d--PTg~sLHlGh~v~---l~~~~~l-Q~~G~~~~~lIgd 73 (420)
T 1jil_A 4 VLIEDLKWRGLIYQQTDEQGIEDLLNK----EQVTLYCGAD--PTADSLHIGHLLP---FLTLRRF-QEHGHRPIVLIGG 73 (420)
T ss_dssp HHHHHHHHTTCCCCBSCHHHHHHHHHH----SCCEEEEEEC--CSSSSCBHHHHHH---HHHHHHH-HHTTCEEEEEECT
T ss_pred HHHHHHHHcCchhhcCCHHHHHHHHcC----CCCEEEEeeC--CCCCCccHHHHHH---HHHHHHH-HHCCCcEEEEEcC
Confidence 477888888876544445566655532 1233333333 4777 99999663 2234444 4569998876653
Q ss_pred Cc--CCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhcc
Q psy14678 86 DC--HGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASL 123 (129)
Q Consensus 86 D~--~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L 123 (129)
.+ .|+|.-...++. -++++++.+.+..+++.+.++
T Consensus 74 ~ta~igdp~gk~~~R~---~l~~e~i~~n~~~~~~~~~~~ 110 (420)
T 1jil_A 74 GTGMIGDPSGKSEERV---LQTEEQVDKNIEGISKQMHNI 110 (420)
T ss_dssp TGGGTCCCTTCSSCCC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEecCCCccccccc---cCCHHHHHHHHHHHHHHHHHH
Confidence 22 355532222333 468999988777777766555
No 37
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=96.33 E-value=0.0024 Score=51.43 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=42.8
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+.. +.++++ |+++.+..| |-|+.- - ..+++++.+.+.+....+.++|+++
T Consensus 12 PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~-------~---~~~~~~l~~~~~~~~~~~lA~Gldp 74 (322)
T 3tzl_A 12 PSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT-------S---SQDGEKLKQNSLKAAAAFLSLGIDP 74 (322)
T ss_dssp CSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT-------T---CCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec-------C---CCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 5789999998875432 344444 999887665 333321 1 3467888777788888888888764
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.014 Score=46.51 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=54.0
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
+++.++- .+...+..|....+. + +++.+.++. -|+|.+||||+.. +. .+.++ +..|+++.+..|= .|+.
T Consensus 8 ~l~~rg~-~e~~~~~~l~~~l~~---~-~~~~vy~G~-~PTg~lHlG~l~~-l~--~~~~l-q~~g~~~~~~i~D-~~a~ 76 (323)
T 2cyb_A 8 RLITRNA-EEVVTEEELRQLIET---K-EKPRAYVGY-EPSGEIHLGHMMT-VQ--KLMDL-QEAGFEIIVLLAD-IHAY 76 (323)
T ss_dssp HHHHTTC-SEEETHHHHHHHHHS---C-SCCEEEEEE-CCCSCCBHHHHHH-HH--HHHHH-HHTTCEEEEEECH-HHHH
T ss_pred HHHHcCC-hhhcCHHHHHHHHhC---C-CCCEEEECc-CCCCcchHHHHHH-HH--HHHHH-HHCCCcEEEEECC-ceeE
Confidence 3445553 333334455544432 2 234444443 4678999999632 22 23333 4458887766652 1111
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 91 PIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 91 ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
+....+++++.+.+..+.+++.++|+++
T Consensus 77 ---------~~d~~~~~~i~~~~~~~~~~~~a~Gldp 104 (323)
T 2cyb_A 77 ---------LNEKGTFEEIAEVADYNKKVFIALGLDE 104 (323)
T ss_dssp ---------HTTCCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred ---------cCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 1112377888888888888888888764
No 39
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=96.31 E-value=0.021 Score=47.21 Aligned_cols=99 Identities=10% Similarity=-0.081 Sum_probs=61.7
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
.++.|+-.|+.. ++....+.-. .++++.+.++. -|+| .+||||..... .+.++++.-|..|.++.|
T Consensus 53 ~~~~RG~~~~~~---d~~~~l~~~~-~~~~~~vy~G~-~PTg~~lHLGh~v~~~---~~~~lQ~~~~~~v~i~I~----- 119 (395)
T 3i05_A 53 HFLRRGIFFSHR---DLNLLLDVYE-SGQPFYLYTGR-GPSSESMHMGHLIPFM---FTKWLQDSFRVPLVIQMT----- 119 (395)
T ss_dssp HHHHTTSEEEEE---SHHHHHHHHH-TTCCEEEEEEE-CCCSSCCBGGGSHHHH---HHHHHHHHHTCCEEEEEC-----
T ss_pred HHHhcCCccccc---cHHHHHHHHh-cCCCeEEEEee-cCCCccchHHHHHHHH---HHHHHHHhcCCcEEEEEc-----
Confidence 456666655433 3333444322 34566666663 3688 79999986652 333344445888877644
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
+.. ++... ..+++++.+.+..+...+.++|+++
T Consensus 120 D~~--~~l~~---~~~~e~i~~~~~~~~~~~lA~GlDp 152 (395)
T 3i05_A 120 DDE--KFYFR---NIPMEQVEAMTTENIKDIIAMGFDP 152 (395)
T ss_dssp HHH--HHHHS---CCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred chH--HHhcC---CCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 322 12222 4799999998899999999988864
No 40
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.30 E-value=0.002 Score=54.79 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.1
Q ss_pred CCCCCCcCCchHHHHHHHHHHHHHH
Q psy14678 47 PPYANGTPHIGHAVNKILKDITLRS 71 (129)
Q Consensus 47 ~P~vng~lHiGH~~~~v~~D~~~R~ 71 (129)
+|.|||.|||||+++.++.-.++|-
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~ 54 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS 54 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH
Confidence 6889999999999999988888764
No 41
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=96.27 E-value=0.013 Score=48.70 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=60.7
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
.+++|+-.|+.. ++....+.-. .++++.+.++. -|+| .+||||..+.. .+.++++.-|..+.+..| |.|.
T Consensus 76 ~~~~RG~i~~~~---d~~~ll~~~~-~~~p~~vy~G~-~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~Ia-D~~a 146 (406)
T 3tze_A 76 YFFRRGIVFAHR---DFNLLLDEIA-NNRPFYLYTGR-GPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQIT-DDEK 146 (406)
T ss_dssp HHHHTTSEEEEE---SHHHHHHHHH-TTCCEEEEEEE-CCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC-HHHH
T ss_pred HHHhCCCeeccc---cHHHHHHHHh-cCCCeEEEEee-CCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEee-ChHH
Confidence 556666654433 3333343332 44567777663 3687 89999977653 233344444888776544 2221
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
+. . . ..+++++.+.+..+...+.++|+++
T Consensus 147 --~l---~-~---~~~~e~i~~~~~~~~~~~lA~GlDp 175 (406)
T 3tze_A 147 --FL---W-K---SMRLEDAMAYGRENIKDIVTLGFDP 175 (406)
T ss_dssp --HH---H-S---SCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred --Hc---C-C---CCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 11 1 2 4789999999999999999988875
No 42
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=96.20 E-value=0.037 Score=44.83 Aligned_cols=100 Identities=14% Similarity=0.023 Sum_probs=54.9
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
+++.++- -+...+.+|....+. +++..+.+.-=| +|.+||||....+ -.+.+++ ..|+++.+..| |-|+.
T Consensus 16 ~l~~r~~-~e~~~~~~L~~~L~~---~~~~~vy~G~~P--Tg~lHlGhyl~~l--~~~~~lQ-~~G~~~~~~i~-D~~a~ 85 (348)
T 2j5b_A 16 TQLLSIA-EECETLDRLKQLVDS---GRIFTAYNGFEP--SGRIHIAQALITV--MNTNNMI-ECGGQMIIYIA-DWFAK 85 (348)
T ss_dssp HHHHTTC-SEESCHHHHHHHHHH---TCCEEEEEEECC--CSSCBHHHHHHHH--HHHHHHH-HTTEEEEEEEC-HHHHH
T ss_pred HHHHcCc-ccccCHHHHHHHHhc---CCCCEEEeccCC--CCCCchhHHHHHH--HHHHHHH-HcCCcEEEEec-cchhh
Confidence 3444552 222334556555544 223344444444 5899999933322 2334444 45999877665 22221
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 91 PIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 91 ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
..... +.+++++.+.+..+.+.+.++|+++
T Consensus 86 ----~~~~~---~~~~e~i~~~~~~~~~~~la~Gldp 115 (348)
T 2j5b_A 86 ----MNLKM---NGDINKIRELGRYFIEVFKACGINL 115 (348)
T ss_dssp ----HTTGG---GGCHHHHHHHHHHHHHHHHHTTCCG
T ss_pred ----hCCCC---CCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 11122 4577888777788888888887764
No 43
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=96.18 E-value=0.05 Score=44.29 Aligned_cols=99 Identities=13% Similarity=-0.025 Sum_probs=55.3
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
+++.++ .-+...+..|....+. +++..+.+.- -|+|.+|||| ...+. .+. +++..|+++.+..| |.|+.
T Consensus 11 ~l~~r~-~~e~~~~~~L~~~l~~---~~~~~iy~G~--~PTg~lHlG~-l~~l~--~~~-~lQ~~G~~~~~~ia-D~~a~ 79 (364)
T 2cya_A 11 NRIARN-TVEIVTEEELKGLLAS---GARIKGYIGY--EPSGVAHIGW-LVWMY--KVK-DLVEAGVDFSVLEA-TWHAY 79 (364)
T ss_dssp HHHHTT-CSEEETHHHHHHHHHH---CSCCEEEEEE--CCCSSCBTHH-HHHHH--HHH-HHHHTTCEEEEEEC-HHHHH
T ss_pred HHHHcC-chhcCCHHHHHHHHhc---CCCCEEEecc--CCCCCccHhH-HHHHH--HHH-HHHHCCCCEEEEEe-Ccchh
Confidence 344555 3333334455433332 2233333333 3478999999 44432 233 33445999887766 22221
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 91 PIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 91 ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
..... |.+++++.+.+..+...+.++|+++
T Consensus 80 ----~~~ps---~~~~e~i~~~~~~~~~~~la~G~dp 109 (364)
T 2cya_A 80 ----INDKL---GGDMDLIRAAARIVRRVMEAAGVPV 109 (364)
T ss_dssp ----HTTGG---GGCHHHHHHHHHHHHHHHHHTTCCG
T ss_pred ----hCCCC---CCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 11112 4678888888888888888888764
No 44
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=96.15 E-value=0.0036 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.8
Q ss_pred CCCCCCcCCchHHHHHHHHHHHHHH
Q psy14678 47 PPYANGTPHIGHAVNKILKDITLRS 71 (129)
Q Consensus 47 ~P~vng~lHiGH~~~~v~~D~~~R~ 71 (129)
+|.|||.+||||+++.++.-.++|-
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~ 31 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR 31 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH
Confidence 5889999999999999988777763
No 45
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.15 E-value=0.0052 Score=50.37 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=56.8
Q ss_pred HhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchH
Q psy14678 13 FKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 92 (129)
Q Consensus 13 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki 92 (129)
+.|+=.|+ -.++....+.-+ ++++|+|.++. -|+|.+||||..+.. -.+++...|++|.+..+ |.|..
T Consensus 47 lrRgi~f~---hRd~d~il~~~e-~gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~Ia-D~ha~-- 114 (372)
T 3a04_A 47 MRRGIIFG---HRDFDKILEAKA-RGERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAIA-DAEAF-- 114 (372)
T ss_dssp HHTTSEEE---EESHHHHHHHHH-TTCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEEC-HHHHH--
T ss_pred hccceeee---ccCHHHHHHHHH-cCCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEEe-cchhh--
Confidence 44555444 233444555444 45566666653 468999999987543 24555667999886654 33321
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 93 ELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 93 ~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
..+. ..+++.+.+.+.++..++-++|+++
T Consensus 115 ---t~~~---~~~~e~~r~~~~~~~~~~lA~GlDP 143 (372)
T 3a04_A 115 ---AVRR---IGREEAVRIAVEEYIANMIALGLDP 143 (372)
T ss_dssp ---HTTC---CCHHHHHHHHHHTTHHHHHHHTCCT
T ss_pred ---ccCC---CCCHHHHHHHHHHHHHHHHHcCCCh
Confidence 1111 2234445566777788888888765
No 46
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=96.06 E-value=0.011 Score=49.39 Aligned_cols=102 Identities=16% Similarity=0.012 Sum_probs=58.4
Q ss_pred HHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCc-CCchHHHHHHHHHHHHHHHHhcCCceEEeCCC-
Q psy14678 8 YLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPGW- 85 (129)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~-lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~- 85 (129)
+++++..++-.+...++..|....+. ++..+.+.-= |+|. +||||... --.+.++ +..|+++.+..|=
T Consensus 3 ~~~~L~~Rg~~~~~~~~~~L~~~L~~----~~~~iy~G~d--PTg~sLHlGh~v~---l~~l~~l-Q~~G~~~i~lIgd~ 72 (419)
T 2ts1_A 3 LLAELQWRGLVNQTTDEDGLRKLLNE----ERVTLYCGFD--PTADSLHIGHLAT---ILTMRRF-QQAGHRPIALVGGA 72 (419)
T ss_dssp HHHHHHHHTCCSEESCHHHHHHHHHH----SCCEEEEEEC--CSSSSCBGGGHHH---HHHHHHH-HHTTCEEEEEECTT
T ss_pred HHHHHHHcCchhhcCCHHHHHHHHcC----CCCEEEEeeC--CCCCCccHHHHHH---HHHHHHH-HHCCCcEEEEEcCc
Confidence 67788888875544444555544332 2233333333 4777 99999663 2234444 4569998766653
Q ss_pred C-cCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhc
Q psy14678 86 D-CHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEAS 122 (129)
Q Consensus 86 D-~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~ 122 (129)
+ -.|+|.-...++. -++++++.+.+..+++....
T Consensus 73 ta~igdpsgk~~~R~---~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 73 TGLIGDPSGKKSERT---LNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp GGGTCCCTTCSSCCC---CCCHHHHHHHHHHHHHHHTT
T ss_pred eeEecCCCCcccccc---CCCHHHHHHHHHHHHHHHHH
Confidence 2 2355533223333 46888888877777665443
No 47
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=95.94 E-value=0.04 Score=45.52 Aligned_cols=100 Identities=14% Similarity=-0.060 Sum_probs=60.1
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCC-CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vn-g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
.++.|+-.|+..+ +....+.-. .++++.+.++. -|+ |.+||||..... .+.++++.-|..|.+..|
T Consensus 49 ~l~~RG~i~~~~d---~~~l~~~l~-~g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~----- 115 (393)
T 3hv0_A 49 HFFRRNIFLSHRD---FEKILDVYE-KGELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT----- 115 (393)
T ss_dssp HHHHTTSEEEEES---HHHHHHHHH-TTCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC-----
T ss_pred HHHhCCCccccCC---HHHHHHHHh-cCCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc-----
Confidence 4556666444333 333333222 34455666553 356 789999976654 233445555777776443
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
++ .....+. ..+++++.+.+..+...+.++|+++
T Consensus 116 D~-~~~~~r~---~~~~e~i~~~~~~~~~~~lA~GlDp 149 (393)
T 3hv0_A 116 DD-EKFIFKS---NLTLEETHNYAYENMKDIIACGFDP 149 (393)
T ss_dssp HH-HHHHHCT---TCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred Ch-HHHhhcc---CCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 33 1222333 6899999998899999999988864
No 48
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.91 E-value=0.0061 Score=49.67 Aligned_cols=108 Identities=17% Similarity=0.027 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCccccc-h----hhhHHHHHHhcCCCCcEEEEcCCCCCCCc-CCchHHHHHHHHHHHHHHHHhcCCce
Q psy14678 6 SLYLQDLFKNIPDLSECG-F----SELYSWQREALNGKPEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRV 79 (129)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~----~~~~~w~~~~~~~~~~~~i~~~~P~vng~-lHiGH~~~~v~~D~~~R~~~~~G~~V 79 (129)
..++..+.+++-. +.+. + .+|....+....+.+..+.+.-- |+|. +|||| ...+. .+.+++ ..|+++
T Consensus 9 ~~~~~~l~~Rg~~-~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~--PTg~sLHLGh-l~~l~--~~~~lQ-~~G~~~ 81 (356)
T 2pid_A 9 QGLLAAQKARGLF-KDFFPETGTKIELPELFDRGTASFPQTIYCGFD--PTADSLHVGH-LLALL--GLFHLQ-RAGHNV 81 (356)
T ss_dssp -CHHHHHHHHTSC-CEEECSSCTTSCGGGGC-------CCEEEEEEC--CSSSSCBHHH-HHHHH--HHHHHH-HTTCEE
T ss_pred HHHHHHHHHcCCh-heeCCccccHHHHHHHHhcCccCCCCEEEEeec--CCCCcccHHH-HHHHH--HHHHHH-HCCCcE
Confidence 4467777777753 2222 2 24543333322122334444433 4786 99999 43333 244444 469998
Q ss_pred EEeCCCCc--CCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhcc
Q psy14678 80 HYVPGWDC--HGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASL 123 (129)
Q Consensus 80 ~~~~G~D~--~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L 123 (129)
.+..|=.+ .|+|.-...++. ..+++++.+.+..+...+.++
T Consensus 82 ~~lIaD~hal~~dp~g~~~~R~---~l~~e~i~~n~~~~~~~~~a~ 124 (356)
T 2pid_A 82 IALVGGATARLGDPSGRTKERE---ALETERVRANARALRLGLEAL 124 (356)
T ss_dssp EEEECTTGGGTCCCTTCSSCCC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEccceeeecCCcccccccc---cCCHHHHHHHHHHHHHHHHHh
Confidence 76665222 233321111222 457888887777777776655
No 49
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=95.90 E-value=0.06 Score=44.96 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=56.5
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCC-CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vn-g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
.++.|+-.+...++..|-...+. ++++.+.++. -|+ |.|||||....+. +.+++...|+++.+..| |.++
T Consensus 77 ~l~~RG~i~~~~d~~~l~~~l~~----g~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta 147 (432)
T 2ip1_A 77 HFLRKGLFFSERDFTKILDLYEQ----GKPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEK 147 (432)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHH----TCCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHH
T ss_pred HHHhCCCcccCCCHHHHHHHHhc----CCCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe-cccc
Confidence 55666665543343444332222 2345555443 246 8999999887652 22344437999887776 2222
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
. . ... ..+++++.+.+.+....+.++++++
T Consensus 148 ~----l-~~~---~~t~e~i~~~~~~~~~~~lA~GlDp 177 (432)
T 2ip1_A 148 F----L-FKH---KLTINDVKNFARENAKDIIAVGFDP 177 (432)
T ss_dssp H----H-HCT---TCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred e----e-CCC---CCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 1 0 111 3567777776666777777777654
No 50
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=95.70 E-value=0.041 Score=43.88 Aligned_cols=72 Identities=17% Similarity=0.035 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRL 119 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~ 119 (129)
++.+.++ --|+|.+|||| ...+. ..++++..|+++.+..|= .|+. .....+++++.+.+..+..+
T Consensus 28 ~~~vy~G-~~PTg~lHlGh-l~~l~---~~~~lQ~~g~~~~~~i~D-~~a~---------~~~~~~~e~i~~~~~~~~~~ 92 (314)
T 2zp1_A 28 EKSAYIG-FEPSGKIHLGH-YLQIK---KMIDLQNAGFDIIILLAD-LAAY---------LNQKGELDEIRKIGDYNKKV 92 (314)
T ss_dssp SEEEEEE-ECCCSSCBHHH-HHHHH---HHHHHHHTTEEEEEEECH-HHHH---------HTTCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEc-cCCCCCcchhh-HHHHH---HHHHHHHCCCCEEEEEec-ceEe---------cCCCCCHHHHHHHHHHHHHH
Confidence 3444433 22478999999 54432 233444469998877652 2111 00123688888888888888
Q ss_pred hhccCCc
Q psy14678 120 EASLLVT 126 (129)
Q Consensus 120 ~~~L~i~ 126 (129)
+.++|++
T Consensus 93 ~~a~G~d 99 (314)
T 2zp1_A 93 FEAMGLK 99 (314)
T ss_dssp HHHTTCC
T ss_pred HHhcCCC
Confidence 8888875
No 51
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=95.70 E-value=0.0055 Score=51.97 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=28.1
Q ss_pred EcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 44 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 44 ~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
+==+|.|||.+||||+++.++.-.++|-. .| .|+.=+||.+
T Consensus 28 ~RFAPsPtG~LHiG~~rtal~n~l~Ar~~--~G---~filRieDtD 68 (488)
T 3afh_A 28 VRFAPSPTGHLHVGGARTALFNWMFARKE--GG---KFILRIEDTD 68 (488)
T ss_dssp EEECCCCSSSCBHHHHHHHHHHHHHHHHH--TC---EEEECBCCCC
T ss_pred EEECCCCCCCccHHHHHHHHHHHHHHHHc--CC---EEEEEEeeCC
Confidence 43458899999999999998777776642 33 3444444443
No 52
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=95.63 E-value=0.015 Score=47.03 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=40.8
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcC-CceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQG-KRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G-~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+ --+.+++ ..| +++.+..| |-|+.-. .. +.+|+++.+.+.+...++.++++++
T Consensus 10 PTg~lHlGh~~g~l--~~~~~lQ-~~G~~~~~~~Ia-D~~a~~~-----~~---~~~~~~i~~~~~~~~~~~la~Gldp 76 (337)
T 2el7_A 10 PSGEIHIGNYLGAI--KQWVAIG-EKLGRDAFFCIV-DYHALTN-----PL---AYDPSTLAQRTFEAALVNIAAGLDP 76 (337)
T ss_dssp SCSCCBHHHHHTHH--HHHHHHH-HHHGGGEEEEEC-GGGGGGS-----TT---TSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCcccHHHHHHHH--HHHHHHH-hcCCCCEEEEEe-CceeecC-----CC---CCCHHHHHHHHHHHHHHHHHhCCCh
Confidence 46889999988764 1223333 357 88776655 2233210 00 2567777777777777787777764
No 53
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=95.60 E-value=0.026 Score=46.21 Aligned_cols=75 Identities=16% Similarity=0.058 Sum_probs=42.3
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHH-HHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDI-TLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLP 117 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~-~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~ 117 (129)
+..+.+.-- |+|.+|||| .++.-+ +.++ ...|++|.+..| |-|+. .-... +.+++++.+.+..+.
T Consensus 56 ~~~iy~G~~--PTg~lHlG~---gvl~~~~~~~l-Q~~G~~~~~lIa-D~ha~----i~d~~---~~~~~~i~~~~~~~~ 121 (373)
T 3vgj_A 56 KLICYDGFE--PSGRMHIAQ---GLLKSIIVNKL-TSNGCTFIFWIA-DWFAH----LNNKM---SGDLKKIKKVGSYFI 121 (373)
T ss_dssp SCEEEEEEC--CCSSCBHHH---HHHHHHHHHHH-HTTTCEEEEEEC-HHHHH----HTTGG---GGCHHHHHHHHHHHH
T ss_pred CceEEeCCC--CCCCceehh---hHHHHHHHHHH-HHCCCcEEEEEe-cceeE----ecCCC---CCCHHHHHHHHHHHH
Confidence 334444433 467999999 233322 3444 456999887766 33322 01112 456666666666667
Q ss_pred HHhhccCCcc
Q psy14678 118 RLEASLLVTI 127 (129)
Q Consensus 118 ~~~~~L~i~~ 127 (129)
..+.++|+++
T Consensus 122 ~~~~a~G~dp 131 (373)
T 3vgj_A 122 EVWKSCGMNM 131 (373)
T ss_dssp HHHHHTTCCS
T ss_pred HHHHHcCCCh
Confidence 7777777654
No 54
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=95.58 E-value=0.067 Score=43.74 Aligned_cols=101 Identities=12% Similarity=-0.050 Sum_probs=54.3
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCc
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 90 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ 90 (129)
+++.+++.-+...+..|....+. +++..+.+.-= |+|.+||||....+. .+.+++ ..|+++.+..| |-|+.
T Consensus 8 ~l~~r~~~~e~~~~~~l~~~l~~---~~~~~vy~G~~--PTg~lHlG~yl~~l~--~~~~lQ-~~G~~~~~~ia-D~ha~ 78 (375)
T 2cyc_A 8 NLVLKKPTEEVLTVENLRHLFEI---GAPLQHYIGFE--ISGYIHLGTGLMAGA--KIADFQ-KAGIKTRVFLA-DWHSW 78 (375)
T ss_dssp HHHHSTTEEEEETHHHHHHHHHH---TCCCBEEEEEC--CCSCCBHHHHHHHHH--HHHHHH-HTTCBCEEEEC-HHHHH
T ss_pred HHHhcCCceeecCHHHHHHHHhc---CCCcEEEeCCC--CCCCcCchHHHHHHH--HHHHHH-HCCCcEEEEec-CcEEE
Confidence 44556644333334445444433 22333334333 468999999444332 233444 46999887665 22211
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHH-HHHH----HHhhccCCcc
Q psy14678 91 PIELKAITSKDKLLSPLDIRKKG-LHLP----RLEASLLVTI 127 (129)
Q Consensus 91 ki~~~a~k~l~~~~~p~e~~~~~-~~~~----~~~~~L~i~~ 127 (129)
..... |.+++++.+.+ ..+. ..+.++|+++
T Consensus 79 ----~~~~~---g~~~e~i~~~~~~~~~~~~~~~~la~G~dp 113 (375)
T 2cyc_A 79 ----INDKL---GGDLEVIQEVALKYFKVGMEKSIEVMGGDP 113 (375)
T ss_dssp ----HTTGG---GGCHHHHHHHHHHTHHHHHHHHHHHTTCCG
T ss_pred ----cCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 11222 55777777666 6666 7788887764
No 55
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.55 E-value=0.034 Score=44.53 Aligned_cols=102 Identities=14% Similarity=-0.016 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCc-CCchHHHHHHHHHHHHHHHHhcCCceEEeCC-
Q psy14678 7 LYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPG- 84 (129)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~-lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G- 84 (129)
.+++.+..++=.+.-.++..|....+. ++..+.+.-- |+|. +||||... ...+. +++..|+++.+..|
T Consensus 5 ~~~~~l~~Rg~~~~~~~~~~l~~~l~~----~~~~vy~G~~--PTg~slHlGh~l~---l~~~~-~lQ~~g~~~~~~i~D 74 (322)
T 2yxn_A 5 NLIKQLQERGLVAQVTDEEALAERLAQ----GPIALVCGFD--PTADSLHLGHLVP---LLCLK-RFQQAGHKPVALVGG 74 (322)
T ss_dssp SHHHHHHHTTCCSEESSHHHHHHHHHH----SCCEEEEEEC--CSSSSCBHHHHHH---HHHHH-HHHHTTCEEEEEECT
T ss_pred HHHHHHHHCCceeeeCCHHHHHHHHcC----CCCEEEEeec--CCCCcccHHHHHH---HHHHH-HHHHcCCcEEEEEcc
Confidence 356777788865443334555544331 2333444433 4788 99999663 22333 44456999877665
Q ss_pred CCc-CCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q psy14678 85 WDC-HGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEA 121 (129)
Q Consensus 85 ~D~-~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~ 121 (129)
++. .|+|.-...++. -.+++++.+.++.+.+.+.
T Consensus 75 ~~a~~~dp~g~~~~R~---~l~~e~i~~n~~~~~~~~~ 109 (322)
T 2yxn_A 75 ATGLIGDPSFKAAERK---LNTEETVQEWVDKIRKQVA 109 (322)
T ss_dssp TGGGTCCCTTCSSCCC---CCCHHHHHHHHHHHHHHHG
T ss_pred ceeeecCCCCcccccc---cCCHHHHHHHHHHHHHHHH
Confidence 211 133321111222 3478888776655544443
No 56
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=95.55 E-value=0.12 Score=43.25 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=57.7
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCC-CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vn-g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
.++.|+-.|+.. ++....+.-. .++++.+.++.- |+ |.|||||....+. +.+++...|+++.+..|=.+ +
T Consensus 83 ~l~~RG~i~~~~---d~~~l~~~l~-~~~~~~vy~G~d-PTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD~t-a 153 (437)
T 1r6u_A 83 HFLRRGIFFSHR---DMNQVLDAYE-NKKPFYLYTGRG-PSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-K 153 (437)
T ss_dssp HHHHHTSEEEEE---SHHHHHHHHT-TTCCEEEEEEEC-CCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECHHH-H
T ss_pred HHHhCCCccCCC---CHHHHHHHHh-cCCCcEEEEccc-CCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-e
Confidence 455666644433 3333333322 445666666633 56 8999999987652 22333337998877766211 1
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
. . - . ..+++++.+.+......+.++++++
T Consensus 154 ~--i---g-d---~lt~e~i~~n~~~~~~~~lA~GlDp 182 (437)
T 1r6u_A 154 Y--L---W-K---DLTLDQAYGDAVENAKDIIACGFDI 182 (437)
T ss_dssp H--H---H-S---SCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred e--e---c-C---CCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 1 0 0 0 3677888777777777777777664
No 57
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=95.40 E-value=0.022 Score=50.18 Aligned_cols=76 Identities=18% Similarity=0.077 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRL 119 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~ 119 (129)
++.+.++ --|+|.||||| .++.-+..+.++..|++|.+..| |-|+.-. ... +.+++++.+.+......
T Consensus 40 ~~~vy~G-~~PTg~lHLG~---~v~~~~~~~~lQ~~G~~~~~lIa-D~ha~~~----d~~---~~~~e~i~~~~~~~~~~ 107 (690)
T 3p0j_A 40 LIRCYDG-FEPSGRMHIAQ---GIFKAVNVNKCTAAGCEFVFWVA-DWFALMN----DKV---GGELEKIRIVGRYLIEV 107 (690)
T ss_dssp TEEEEEE-ECCCSCCBHHH---HHHHHHHHHHHHHTTEEEEEEEC-CGGGGGG----CTT---TTHHHHHHHHHHHHHHH
T ss_pred CceEEee-ecCCCcchhHh---hHHHHHHHHHHHHCCCcEEEEEe-eeEEEec----CCC---cchHHHHHHHHHHHHHH
Confidence 3444444 23578999999 33322223334446999876665 4444310 112 45556665555666667
Q ss_pred hhccCCcc
Q psy14678 120 EASLLVTI 127 (129)
Q Consensus 120 ~~~L~i~~ 127 (129)
+.++|+++
T Consensus 108 ~lA~GlDp 115 (690)
T 3p0j_A 108 WKAAGMDM 115 (690)
T ss_dssp HHHTTCCG
T ss_pred HHHcCCCh
Confidence 77776653
No 58
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=95.32 E-value=0.029 Score=45.11 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=41.5
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+. -+.+++ .|+++.+..| |-|+.- . ..+++++.+.+..+..++.++|+++
T Consensus 10 PTG~lHlGn~vg~l~--~~~~lQ--~g~~~~~~Ia-D~ha~~---------~-~~~~e~i~~~~~~~~~~~la~Gldp 72 (328)
T 1i6k_A 10 PSGVITIGNYIGALR--QFVELQ--HEYNCYFCIV-DQHAIT---------V-WQDPHELRQNIRRLAALYLAVGIDP 72 (328)
T ss_dssp CCSCCBHHHHHHTHH--HHHHHT--TTSEEEEEEC-HHHHTT---------S-CCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCCcccHHHHHHHHH--HHHHHH--cCCcEEEEEe-Cceeec---------C-CCCHHHHHHHHHHHHHHHHHhCCCh
Confidence 468999999887652 122332 2899876665 222211 1 2477888888888888888888874
No 59
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=95.17 E-value=0.015 Score=49.47 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=27.7
Q ss_pred CCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCC
Q psy14678 47 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 86 (129)
Q Consensus 47 ~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D 86 (129)
+|.|||.+||||+++.++.-.++|- ..|.=++.+--+|
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDtD 49 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDTD 49 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCC
Confidence 4889999999999999988888874 3454344444443
No 60
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.07 E-value=0.0089 Score=50.05 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCC
Q psy14678 7 LYLQDLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 85 (129)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~ 85 (129)
.+++.+..++-.+...++..|....+. ++..+.+.-= |+| .+||||.. .+. .+.++ +..|+++.+..|=
T Consensus 4 ~~~~~L~~RG~~~~~~~~e~L~~~L~~----~~~~iy~G~d--PTg~sLHLGhlv-~l~--~l~~l-Q~~G~~~i~lIgD 73 (432)
T 2jan_A 4 MILDELSWRGLIAQSTDLDTLAAEAQR----GPMTVYAGFD--PTAPSLHAGHLV-PLL--TLRRF-QRAGHRPIVLAGG 73 (432)
T ss_dssp -CHHHHHHHTCCSEESCHHHHHHHHHH----SCCEEEEEEC--CSSSSCBGGGHH-HHH--HHHHH-HHTTCEEEEEECH
T ss_pred HHHHHHHHcCchhhcCCHHHHHHHHcC----CCCEEEEeeC--CCCCCcCHHHHH-HHH--HHHHH-HHCCCcEEEEEcC
Confidence 467788888876544444555533332 2333333333 478 49999943 332 34444 4569998877652
Q ss_pred Cc--CCchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy14678 86 DC--HGLPIELKAITSKDKLLSPLDIRKKGLHLPRL 119 (129)
Q Consensus 86 D~--~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~ 119 (129)
.+ .|+|. ...++. -.+++++.+.+..+++.
T Consensus 74 ~ta~igdps-k~~~R~---~~~~e~i~~n~~~~~~~ 105 (432)
T 2jan_A 74 ATGMIGDPR-DVGERS---LNEADTVAEWTERIRGQ 105 (432)
T ss_dssp HHHHHHCCC-CTTTSG---GGHHHHHHHHHHHHHHH
T ss_pred cEEEccCCc-cccccc---CCCHHHHHHHHHHHHHH
Confidence 11 13333 222222 35677887776666544
No 61
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=95.03 E-value=0.092 Score=44.36 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=57.4
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCC-CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 89 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vn-g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G 89 (129)
.++.|+-.|+.. ++....+.-. .++++.+.++.- |+ |.|||||..+.+. ..+++...|++|.+..|=.+ +
T Consensus 130 ~l~~RG~i~~~~---d~~~l~~~l~-~~~~~~vy~G~d-PTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~~-a 200 (477)
T 1r6t_A 130 HFLRRGIFFSHR---DMNQVLDAYE-NKKPFYLYTGRG-PSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-K 200 (477)
T ss_dssp HHHHTTSEEEEE---SHHHHHHHHH-TTCCEEEEEEEC-CCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECHHH-H
T ss_pred HHHhCCCccccC---CHHHHHHHHh-cCCCcEEEEccc-CCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-e
Confidence 455666654433 3333333322 345566666533 56 8999999988652 22333337999877666322 1
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
. . - . ..+++++.+.+......+.++++++
T Consensus 201 ~--i---g-d---~lt~e~i~~n~~~~~~~~lA~GlDp 229 (477)
T 1r6t_A 201 Y--L---W-K---DLTLDQAYGDAVENAKDIIACGFDI 229 (477)
T ss_dssp H--H---H-S---SCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred e--e---c-C---CCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 1 0 0 1 3677888777777777777777664
No 62
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=94.93 E-value=0.038 Score=44.67 Aligned_cols=74 Identities=23% Similarity=0.207 Sum_probs=44.8
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPR 118 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~ 118 (129)
-+.+.+...| +|.+||||..+.+. -.++++..|++|.+..| |-|+.- -. ..+|+++.+.+.+...
T Consensus 12 ~~~v~~G~~P--TG~lHLGn~~g~l~---~~~~lQ~~G~~~~~~Ia-D~ha~t------~~---~~dp~~~~~~~~~~~~ 76 (340)
T 2g36_A 12 HMRILSGMRP--TGKLHIGHLVGALE---NWVKLQEEGNECFYFVA-DWHALT------TH---YDDVSKLKEYTRDLVR 76 (340)
T ss_dssp CCEEEEEECC--CSSCBHHHHHTHHH---HHHHHHHTTCEEEEEEC-HHHHHH------HH---TTCCTTHHHHHHHHHH
T ss_pred CCeEEEeeCC--CCcccHHhHHHHHH---HHHHHHHCCCCEEEEEe-cceeec------CC---CCCHHHHHHHHHHHHH
Confidence 3455566655 68999999987642 23334456999887764 332221 11 2345556566666777
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
++.++|+++
T Consensus 77 ~~lA~Gldp 85 (340)
T 2g36_A 77 GFLACGIDP 85 (340)
T ss_dssp HHHHTTCCT
T ss_pred HHHHhCCCh
Confidence 777777764
No 63
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=94.69 E-value=0.021 Score=47.15 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=46.0
Q ss_pred CcEE----EEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHH
Q psy14678 39 PEFI----LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGL 114 (129)
Q Consensus 39 ~~~~----i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~ 114 (129)
++|+ +.++ --|+|.+||||..+.+.. +. .++ .|++|.+..+ |-|..- . ..+|+++.+.+.
T Consensus 30 ~p~~m~~ri~sG-~~PTG~lHLGhyvGal~~--~~-~LQ-~~~~~~~~Ia-D~hAlt-------~---~~~~~~lr~~~~ 93 (388)
T 3prh_A 30 DPFTMKQTIFSG-IQPSGSVTLGNYIGAMKQ--FV-ELQ-HDYNSYFCIV-DQHAIT-------V---PQDRLELRKNIR 93 (388)
T ss_dssp -----CCEEEEE-ECCCSCCBHHHHHHTHHH--HH-HTT-TTSEEEEEEC-HHHHTT-------S---CCCHHHHHHHHH
T ss_pred CCcccCCeEEEe-eCCCCcchHHHHHHHHHH--HH-HHH-ccCcEEEEEe-cceeee-------c---CCCHHHHHHHHH
Confidence 5665 5544 235899999998876531 11 222 3899877654 433321 1 357888888888
Q ss_pred HHHHHhhccCCcc
Q psy14678 115 HLPRLEASLLVTI 127 (129)
Q Consensus 115 ~~~~~~~~L~i~~ 127 (129)
+...++.+.|+++
T Consensus 94 ~~aa~~lA~GlDp 106 (388)
T 3prh_A 94 NLAALYLAVGLDP 106 (388)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHhCCCh
Confidence 9999999998875
No 64
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=94.60 E-value=0.059 Score=44.44 Aligned_cols=102 Identities=12% Similarity=-0.038 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCccc-cchhhhHHHHHHhcCCCCcEEEEcCCCCCCCc-CCchHHHHHHHHHHHHHHHHhcCCceEEeCC-
Q psy14678 8 YLQDLFKNIPDLSE-CGFSELYSWQREALNGKPEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPG- 84 (129)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~-lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G- 84 (129)
+++.+..++-.+.. .++..|....+. ++..+.+.-= |+|. |||||... + -.+.+++ ..|+++.+..|
T Consensus 36 ~~~~L~~Rg~~~~~~~~~e~l~~ll~~----~~~~vy~G~d--PTg~sLHlGhlv~-l--~~l~~lQ-~~G~~~~~lIgD 105 (392)
T 1y42_X 36 TWDLFEERGYVKDTAGTKEHIAELMRT----RRIGAYVGID--PTAPSLHVGHLLP-L--MPLFWMY-LEGYKAFTLIGG 105 (392)
T ss_dssp HHHHHHHHTCCSCEESCHHHHHHHHHH----CCCEEEEEEC--CCSSSCBGGGHHH-H--HHHHHHH-HHTCEEEEEECT
T ss_pred HHHHHHHCCcHHhhcCCHHHHHHHHcC----CCCEEEEeec--CCCCCccHHHHHH-H--HHHHHHH-HcCCcEEEEEcC
Confidence 56666777754422 123334433322 2333333333 4788 99999773 2 2344444 45999876654
Q ss_pred CC-cCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhc
Q psy14678 85 WD-CHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEAS 122 (129)
Q Consensus 85 ~D-~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~ 122 (129)
++ -.|+|.-...++. -.+++++.+.+..++..+.+
T Consensus 106 ~haligdpsgk~~~R~---~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 106 STAKIGDPTGRLKSRD---HLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp TTTTTCCCCC--------------CHHHHHHHHHHHHHH
T ss_pred ceeEeCCCCCcchhhc---cCCHHHHHHHHHHHHHHHHH
Confidence 22 1244421222332 34777776665555554433
No 65
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=94.41 E-value=0.021 Score=46.38 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=42.9
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVTI 127 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~~ 127 (129)
|+|.+||||..+.+. -+.+++. ++++.+..+ |-|..- . ..+|+++.+.+.....++.++|+++
T Consensus 15 PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha~~-------~---~~~~~~~~~~~~~~~~~~lA~GlDp 77 (341)
T 3sz3_A 15 PSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHAIT-------V---RQDPQALHEATLDALAICLAVGVDP 77 (341)
T ss_dssp SSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHHTT-------S---CCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe-cceeEc-------C---CCCHHHHHHHHHHHHHHHHHcCCCh
Confidence 578999999887652 1233333 578776654 333321 1 3578888888889999999998875
No 66
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=94.38 E-value=0.022 Score=46.24 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=43.1
Q ss_pred cEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy14678 40 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRL 119 (129)
Q Consensus 40 ~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~ 119 (129)
..+.+.--| +|.+||||..+.+. -+.+++. |+++.+..+ |-|+.- . ..+|+++.+.+.+...+
T Consensus 5 ~~i~sG~~P--TG~lHLGn~vg~l~--~~~~lQ~--~~~~~~~Ia-D~ha~~---------~-~~d~~~i~~~~~~~~~~ 67 (348)
T 2yy5_A 5 KRALTGIQA--SGKQHLGNYLGVMQ--SLIELQE--QCQLFVFVA-DLHSIT---------V-DFQPQALKQNNFDLVRT 67 (348)
T ss_dssp CEEEEEECC--CTTCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHHTT---------S-CCCHHHHHHHHHHHHHH
T ss_pred eEEEEeeCC--CCcccHHHHHHHHH--HHHHHHh--CCcEEEEEc-Chhhcc---------C-CCCHHHHHHHHHHHHHH
Confidence 344444444 68999999887651 1223333 788776655 222210 0 25677777777788888
Q ss_pred hhccCCcc
Q psy14678 120 EASLLVTI 127 (129)
Q Consensus 120 ~~~L~i~~ 127 (129)
+.++++++
T Consensus 68 ~lA~Gldp 75 (348)
T 2yy5_A 68 LLAVGLDP 75 (348)
T ss_dssp HHHTTCCT
T ss_pred HHHhCCCh
Confidence 88887765
No 67
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=94.19 E-value=0.049 Score=44.20 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=44.7
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPR 118 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~ 118 (129)
+..+.+.--| +|.+||||..+.+. -+.++++ .+++.+..| |.|+.- .. ..+++++.+.+.+...
T Consensus 22 ~~~vysG~~P--TG~lHLGn~~g~l~--~~~~lQ~--~~~~~~~Ia-D~ha~~------~~---~~~~e~i~~~~~~~~~ 85 (351)
T 1yi8_B 22 RPRVLTGDRP--TGALHLGHLAGSLQ--NRVRLQD--EAELFVLLA-DVQALT------DH---FDRPEQVRENVLAVAL 85 (351)
T ss_dssp CSEEEEEECC--SSCCBHHHHHHTHH--HHHHHTS--SSEEEEEEC-HHHHHH------HH---TTCHHHHHHHHHHHHH
T ss_pred CcEEEEeeCC--CCCccHHHHHHHHH--HHHHHHH--hCCeEEEEe-cchhhc------CC---CCCHHHHHHHHHHHHH
Confidence 3344444334 78999999887541 1222332 277766554 322221 11 4688888888888888
Q ss_pred HhhccCCcc
Q psy14678 119 LEASLLVTI 127 (129)
Q Consensus 119 ~~~~L~i~~ 127 (129)
++.++|+++
T Consensus 86 ~~la~Gldp 94 (351)
T 1yi8_B 86 DYLAAGLDP 94 (351)
T ss_dssp HHHHHTCCT
T ss_pred HHHHhCCCh
Confidence 888888864
No 68
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.11 Score=42.61 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=35.7
Q ss_pred HHHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCC
Q psy14678 11 DLFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G 84 (129)
+++.++ .-+...+..|....+. +++++.+.++. -|+|.+||||.++.+. ..++++ .|+++.+..|
T Consensus 14 ~l~~rg-~~e~~~~e~L~~~L~~---~~~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 14 GLITKN-LQEVLNPQIIKDVLEV---QKRHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp HHHHTT-CSEEECHHHHHHHHHT---SCSCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred HHHHcC-cceecCHHHHHHHHHc---cCCCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 344555 2232334445544433 23454444442 3489999999877653 334444 6888776554
No 69
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.37 E-value=0.15 Score=42.54 Aligned_cols=96 Identities=20% Similarity=0.118 Sum_probs=41.0
Q ss_pred HHhcCCCccccchhhhHHHHHHhcCCCCcEEEEcCCCCCCC-cCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCc--C
Q psy14678 12 LFKNIPDLSECGFSELYSWQREALNGKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC--H 88 (129)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~P~vng-~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~--~ 88 (129)
++.++- .+...+.+|....+. + +++.+.++. -|+| .+||||... --.+.++ +..|+++.+..|=.+ .
T Consensus 14 li~Rg~-~e~~~~~~L~~~L~~---~-~~~~vy~G~-dPTg~sLHlGh~v~---l~~l~~l-Q~~G~~~i~lIgD~ta~i 83 (432)
T 1h3f_A 14 LLKRGA-EEIVPEEELLAKLKE---G-RPLTVKLGA-DPTRPDLHLGHAVV---LRKMRQF-QELGHKVVLIIGDFTGMI 83 (432)
T ss_dssp HHHTTC-SEEETHHHHHHHHHT---C-SCCEEEEEE-CTTCCSCBHHHHHH---HHHHHHH-HHTTCEEEEEECCCC---
T ss_pred HHHcch-HHhCCHHHHHHHHhc---C-CCcEEEEcc-cCCCCCCchhhHHH---HHHHHHH-HHCCCCEEEEEccceEEe
Confidence 344554 222334555555531 2 334444332 2577 599999773 2234444 446999876665222 2
Q ss_pred CchHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q psy14678 89 GLPIELKAITSKDKLLSPLDIRKKGLHLPRLE 120 (129)
Q Consensus 89 G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~ 120 (129)
|+|.-...++. -.+++++.+.+..|...+
T Consensus 84 gdpsgk~~~R~---~l~~e~i~~n~~~~~~ql 112 (432)
T 1h3f_A 84 GDPSGRSKTRP---PLTLEETRENAKTYVAQA 112 (432)
T ss_dssp ---------------------HHHHHHHHHHH
T ss_pred cCCCCcccccc---cCCHHHHHHHHHHHHHHH
Confidence 44543333443 466777776666666644
No 70
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=93.09 E-value=0.05 Score=44.26 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=45.3
Q ss_pred CcEEEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHh-cCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy14678 39 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLL-QGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLP 117 (129)
Q Consensus 39 ~~~~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~-~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~ 117 (129)
++.+.+.-- |+|.+||||..+.+ ..|.++ .++++.+..+ |.|..- . ..+|+++.+.+.+..
T Consensus 15 ~~~i~sG~~--PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~ia-D~hA~t-------~---~~~~~~~~~~~~~~~ 76 (346)
T 3n9i_A 15 KPIVFSGAQ--PSGELTIGNYMGAL-----RQWVQMQDDYDCIYCIV-DLHAIT-------A---RQDPALLRKRTLDTL 76 (346)
T ss_dssp CCEEEEEEC--SCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEEC-HHHHTT-------S---CCCHHHHHHHHHHHH
T ss_pred CCEEEECcC--CCCcccHHHHHHHH-----HHHHHHHhhCcEEEEEe-cceeec-------C---CCCHHHHHHHHHHHH
Confidence 344444433 47999999988764 223222 3678776554 433321 1 357888888888888
Q ss_pred HHhhccCCcc
Q psy14678 118 RLEASLLVTI 127 (129)
Q Consensus 118 ~~~~~L~i~~ 127 (129)
.++.++|+++
T Consensus 77 ~~~lA~GlDp 86 (346)
T 3n9i_A 77 ALYLACGIDP 86 (346)
T ss_dssp HHHHHHTCCT
T ss_pred HHHHHcCCCc
Confidence 8888888875
No 71
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=91.69 E-value=0.14 Score=41.65 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=24.7
Q ss_pred EEEcCCCCCCCcCCchHHHHHHHHHHHHHHHHhcCCceEEeCC
Q psy14678 42 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84 (129)
Q Consensus 42 ~i~~~~P~vng~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G 84 (129)
.+.++.- |+|.+||||..+.+. ..++++ .|+++.+..|
T Consensus 37 ~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 37 KIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp EEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred EEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 4444433 678999999877654 334444 6888776554
No 72
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=91.28 E-value=0.47 Score=41.80 Aligned_cols=67 Identities=13% Similarity=-0.195 Sum_probs=46.3
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHh-cCCceEEeCCCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCc
Q psy14678 50 ANGTPHIGHAVNKILKDITLRSNLL-QGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVT 126 (129)
Q Consensus 50 vng~lHiGH~~~~v~~D~~~R~~~~-~G~~V~~~~G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~ 126 (129)
++|.+||||+-.... .+..|+++ -|++|.+..|=++ +. .-.+. |.+++++.+.+..+.+.+.+||++
T Consensus 390 s~g~lHLGh~v~~~k--~l~~~~~~~~g~~v~ilIaD~~-A~----i~d~~---g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 390 ALLKVPLDVAEGMIK--VTKDFIAAHPEGTVTLVLPDWS-AV----ASDEI---TGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp CCSSCBHHHHHHHHH--HHHHHHHHCSSCEEEEEECTTH-HH----HTTCT---TCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCcccchHHHHHH--HHHHHHHHcCCCeEEEEEecch-hh----hCCCC---CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 699999999987643 24566665 4888888777433 11 11122 678888887778888888888875
No 73
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=48.14 E-value=20 Score=22.42 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=19.9
Q ss_pred CchHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy14678 89 GLPIELKAITSKDKLLSPLDIRKKGLHLP 117 (129)
Q Consensus 89 G~ki~~~a~k~l~~~~~p~e~~~~~~~~~ 117 (129)
+.+++.++... |+++++|.+.-+++.
T Consensus 38 ~~tLeeA~~~h---giD~d~ll~eLn~~i 63 (76)
T 2k53_A 38 GESIEDACAVH---GIDADKLVKELNEYF 63 (76)
T ss_dssp CSBHHHHHHHH---TCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 46788888888 999999976544444
No 74
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=40.30 E-value=35 Score=16.93 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.7
Q ss_pred CchHHHH-HHHHHHHHHHHH
Q psy14678 55 HIGHAVN-KILKDITLRSNL 73 (129)
Q Consensus 55 HiGH~~~-~v~~D~~~R~~~ 73 (129)
|+|-++. +++.|.+.++..
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 8899986 677999988864
No 75
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.19 E-value=40 Score=22.99 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=42.9
Q ss_pred CcCC-chHHHH--HHHHHHHHHHHHhcCCceEEeC--CCCcCCchHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCc
Q psy14678 52 GTPH-IGHAVN--KILKDITLRSNLLQGKRVHYVP--GWDCHGLPIELKAITSKDKLLSPLDIRKKGLHLPRLEASLLVT 126 (129)
Q Consensus 52 g~lH-iGH~~~--~v~~D~~~R~~~~~G~~V~~~~--G~D~~G~ki~~~a~k~l~~~~~p~e~~~~~~~~~~~~~~L~i~ 126 (129)
|++| |++-++ .-.-|.+.+|+..+|....-+| |--..++...-.+..+ --+.+++++. +.|.+....|++.
T Consensus 1 ~~~~~~~~r~~~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~---~GG~~~Vt~~-k~W~~Va~~lg~p 76 (121)
T 2rq5_A 1 GPLGSLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINE---MGGMQQVTDL-KKWNKLADMLRIP 76 (121)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHH---TTSHHHHHHT-TCHHHHHHHTCCC
T ss_pred CcHHHhhHhcCCcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHH---cCcHHHhccc-CcHHHHHHHhCCC
Confidence 4566 666665 3456789999999998875333 4444555444444443 2344554432 5777777777765
No 76
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=38.43 E-value=25 Score=21.72 Aligned_cols=24 Identities=25% Similarity=0.040 Sum_probs=17.9
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy14678 90 LPIELKAITSKDKLLSPLDIRKKGLHL 116 (129)
Q Consensus 90 ~ki~~~a~k~l~~~~~p~e~~~~~~~~ 116 (129)
..++.++... |++++++.+.-+++
T Consensus 41 ~tL~~Aa~~~---gid~~~ll~~Ln~~ 64 (73)
T 2k5e_A 41 ESLEQGANAH---GLNVEDILRDLNAL 64 (73)
T ss_dssp SBHHHHHHHT---TCCHHHHHHHHHHH
T ss_pred ccHHHHHHHc---CCCHHHHHHHHHHH
Confidence 5677888887 99999997554443
No 77
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.10 E-value=65 Score=22.42 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCCCCCcCC-chHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHh
Q psy14678 37 GKPEFILHDGPPYANGTPH-IGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITS 99 (129)
Q Consensus 37 ~~~~~~i~~~~P~vng~lH-iGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~ 99 (129)
.++++++.++ -|..| +| .++++.+++..|++|.+.... .--..+...+.+.
T Consensus 17 ~~~~vlla~~----~gd~HdiG-------~~~va~~l~~~G~eVi~lG~~-~p~e~lv~aa~~~ 68 (161)
T 2yxb_A 17 RRYKVLVAKM----GLDGHDRG-------AKVVARALRDAGFEVVYTGLR-QTPEQVAMAAVQE 68 (161)
T ss_dssp CSCEEEEEEE----SSSSCCHH-------HHHHHHHHHHTTCEEECCCSB-CCHHHHHHHHHHT
T ss_pred CCCEEEEEeC----CCCccHHH-------HHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhc
Confidence 4566666655 35666 33 556777889999999866443 2223344444443
No 78
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.06 E-value=1.2e+02 Score=19.80 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCc-eEEeCCCCcCC-chHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHhhccC
Q psy14678 64 LKDITLRSNLLQGKR-VHYVPGWDCHG-LPIELKAITSK-----DKLLSPLDIRKKGLHLPRLEASLL 124 (129)
Q Consensus 64 ~~D~~~R~~~~~G~~-V~~~~G~D~~G-~ki~~~a~k~l-----~~~~~p~e~~~~~~~~~~~~~~L~ 124 (129)
+.|++. -.+-.|.. |.|+.|-...+ .-.+..|.++= -+..+|+|+.+..++|.+...+|.
T Consensus 40 irdiik-smkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflktagsle 106 (112)
T 2lnd_A 40 IRDIIK-SMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTAGSLE 106 (112)
T ss_dssp HHHHHH-HHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHH-HHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhcccch
Confidence 455543 33446776 77888864332 23566777771 134579999999999998887764
No 79
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=22.02 E-value=59 Score=21.83 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=6.2
Q ss_pred CcCCchHHH
Q psy14678 52 GTPHIGHAV 60 (129)
Q Consensus 52 g~lHiGH~~ 60 (129)
+++|.||..
T Consensus 11 DpvH~GH~~ 19 (158)
T 1qjc_A 11 DPITNGHID 19 (158)
T ss_dssp TTCCHHHHH
T ss_pred CCCCHHHHH
Confidence 347888865
No 80
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.12 E-value=1.9e+02 Score=21.47 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCCCCCcCC-chHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHh
Q psy14678 38 KPEFILHDGPPYANGTPH-IGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITS 99 (129)
Q Consensus 38 ~~~~~i~~~~P~vng~lH-iGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~ 99 (129)
++++++.++ -|..| +| ..+++..++..|++|.+.. .+---..+...+++.
T Consensus 123 ~~~vlla~~----~gd~HdiG-------~~iva~~L~~~G~~Vi~LG-~~vp~e~l~~~~~~~ 173 (258)
T 2i2x_B 123 KGTVVCHVA----EGDVHDIG-------KNIVTALLRANGYNVVDLG-RDVPAEEVLAAVQKE 173 (258)
T ss_dssp SCEEEEEEC----TTCCCCHH-------HHHHHHHHHHTTCEEEEEE-EECCSHHHHHHHHHH
T ss_pred CCeEEEEeC----CCCccHHH-------HHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHc
Confidence 455555543 67777 55 4456667888999998543 333334455555554
No 81
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=21.11 E-value=1.5e+02 Score=23.42 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=43.9
Q ss_pred CcCCchHHHHHHHHHHHHHHHHhcCCceEEeCCCCcCCchHHHHHHHhc------------CCCCCHHHHH-HH-HHHHH
Q psy14678 52 GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK------------DKLLSPLDIR-KK-GLHLP 117 (129)
Q Consensus 52 g~lHiGH~~~~v~~D~~~R~~~~~G~~V~~~~G~D~~G~ki~~~a~k~l------------~~~~~p~e~~-~~-~~~~~ 117 (129)
...-+|.+.+.-....+.|+ ..+|.+..--|..|.+...++.+.+ ..|++|.++. +. ...|.
T Consensus 175 aVA~lGTalt~~~~~~L~r~----~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~lP~gkDpdd~l~~~G~~~~~ 250 (329)
T 4edg_A 175 VVATMGTQLSDEHITFIRKL----TSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFT 250 (329)
T ss_dssp EEECSSSCCCHHHHHHHHHH----CSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCTTCCHHHHHHHHCHHHHH
T ss_pred EEECCccCCCHHHHHHHHhc----CCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHhCHHHHH
Confidence 33445666555445566665 4578888888999998877776654 2588999996 33 56676
Q ss_pred HH
Q psy14678 118 RL 119 (129)
Q Consensus 118 ~~ 119 (129)
++
T Consensus 251 ~~ 252 (329)
T 4edg_A 251 TF 252 (329)
T ss_dssp HH
T ss_pred HH
Confidence 65
Done!