RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14678
(129 letters)
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 106 bits (265), Expect = 6e-29
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 25 SELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84
+++ E G P + +++GPP ANG PH+GHA + KD+ R ++G G
Sbjct: 24 EKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAG 83
Query: 85 WDCHGLPIELKAI 97
WD HGLP+EL+
Sbjct: 84 WDTHGLPVELEVE 96
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase
(LeuRS) {Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 104 bits (260), Expect = 5e-28
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 32 REALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP 91
++ G+ + + PY +G H+GH N + D+ R +QG V + GWD GLP
Sbjct: 26 KDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLP 85
Query: 92 IELKAI 97
E A+
Sbjct: 86 AENAAL 91
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 92.7 bits (229), Expect = 7e-24
Identities = 40/78 (51%), Positives = 45/78 (57%)
Query: 25 SELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 84
+ Y E G FILHDGPPYANG H+GHA+NKILKD +R +QG YVPG
Sbjct: 34 EDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93
Query: 85 WDCHGLPIELKAITSKDK 102
WD HGLPIE
Sbjct: 94 WDTHGLPIEQALTKKGVD 111
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase
(ValRS) {Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 90.4 bits (223), Expect = 5e-23
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 36 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK 95
+GKP F++ PP G+ H+GHA++ L+D +R ++G ++PG D G+ ++
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
Query: 96 AI 97
Sbjct: 91 VE 92
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 84.2 bits (207), Expect = 5e-21
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 41 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI 97
++ PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 4 ILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 80.4 bits (197), Expect = 1e-19
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 41 FILHDGPPYANGTPHIGHAVNK-ILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI 97
+++ PYANG H GH + DI +R L+G+ V ++ G D HG PI +A+
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 78.2 bits (191), Expect = 7e-19
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 47 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI 97
Y N PH+GHA ++ D R + L G R ++ G D HG + A
Sbjct: 11 IYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 42.4 bits (98), Expect = 3e-06
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 33 EALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 92
K ++++ G +G H+G+ I + +G V ++ WD +
Sbjct: 12 RERGEKEKYVVESGI-TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFR 70
Query: 93 ELKA 96
++
Sbjct: 71 KVPR 74
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 36.1 bits (82), Expect = 6e-04
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 48 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 92
HIGH + D+ R G ++ YV I
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI 74
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 202
Score = 28.8 bits (63), Expect = 0.14
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 9 LQDLFKNIPD-----LSECGFSELYSWQREALN 36
+++L ++I L E G EL+ Q EA+
Sbjct: 3 VEELAESISSYAVGILKEEGIEELFPPQAEAVE 35
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 425
Score = 27.8 bits (60), Expect = 0.40
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 46 GPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH 88
Y +G AV L + R +LL G V V G +
Sbjct: 13 NTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSEN 55
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 24.4 bits (52), Expect = 4.8
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 47 PPYANGTPHIGHA 59
P G PH+G A
Sbjct: 7 APSPTGDPHVGTA 19
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi
[TaxId: 1708]}
Length = 312
Score = 24.4 bits (52), Expect = 4.8
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 8 YLQDLFKNIPDLSEC------GFSELYSWQREALNGKPEFILHDGPPYANGTP 54
+ + + ++ C G ++ YSW + G+ ++ D A+
Sbjct: 253 DYKKVVQACMQVTRCQGVTVWGITDKYSWVPDVFPGEGAALVWD----ASYAK 301
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 24.0 bits (51), Expect = 6.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 47 PPYANGTPHIGHA 59
PP NG HIGHA
Sbjct: 25 PPEPNGYLHIGHA 37
>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 313
Score = 23.6 bits (51), Expect = 9.6
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 9 LQDLFKNI-------PDLSECGFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVN 61
L+D F ++ PDL++ F+ + + GK G PY + +
Sbjct: 22 LKDNFADVQVSVVDCPDLTKEPFT-FPV---KGICGKTRIAEVGGVPYLLPLVNQKKVYD 77
Query: 62 --KILKDITL 69
KI K+I L
Sbjct: 78 LNKIAKEIKL 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.142 0.439
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,708
Number of extensions: 23655
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 19
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)