Query psy14680
Match_columns 78
No_of_seqs 116 out of 1046
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:59:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dtj_A RNA-binding neurooncolo 99.7 1.7E-18 6E-23 100.0 4.3 59 13-71 2-60 (76)
2 1ec6_A RNA-binding protein NOV 99.7 3.4E-18 1.2E-22 101.3 1.9 59 13-71 2-60 (87)
3 1wvn_A Poly(RC)-binding protei 99.7 2.1E-17 7.3E-22 96.9 4.2 59 10-71 2-60 (82)
4 1zzk_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 95.8 4.8 58 11-71 4-61 (82)
5 1x4m_A FAR upstream element bi 99.7 7.3E-17 2.5E-21 97.0 5.6 64 8-72 9-72 (94)
6 2axy_A Poly(RC)-binding protei 99.7 1.5E-17 5E-22 96.0 2.1 55 12-71 3-57 (73)
7 2opv_A KHSRP protein; KH domai 99.7 8.8E-17 3E-21 95.0 5.1 67 4-71 4-70 (85)
8 2p2r_A Poly(RC)-binding protei 99.7 2E-17 6.8E-22 95.8 2.2 57 12-71 3-59 (76)
9 2dgr_A Ring finger and KH doma 99.6 5.9E-17 2E-21 96.0 3.2 58 9-72 5-62 (83)
10 1x4n_A FAR upstream element bi 99.6 1.3E-16 4.4E-21 95.6 3.4 59 10-71 11-69 (92)
11 1j5k_A Heterogeneous nuclear r 99.6 8.1E-17 2.8E-21 95.9 2.4 59 10-71 10-68 (89)
12 2hh2_A KH-type splicing regula 99.6 1.9E-16 6.4E-21 97.3 3.6 57 15-71 8-64 (107)
13 2anr_A Neuro-oncological ventr 99.6 3.2E-16 1.1E-20 102.2 2.6 61 11-71 3-63 (178)
14 1we8_A Tudor and KH domain con 99.6 1.5E-15 5E-20 92.7 5.1 64 7-71 8-71 (104)
15 2hh3_A KH-type splicing regula 99.6 8.2E-16 2.8E-20 94.6 2.9 55 14-71 11-65 (106)
16 3krm_A Insulin-like growth fac 99.5 2.6E-15 8.8E-20 96.6 3.2 57 13-71 2-58 (163)
17 2ctl_A Vigilin; K homology typ 99.5 6.4E-15 2.2E-19 89.1 4.5 58 12-71 15-72 (97)
18 1vig_A Vigilin; RNA-binding pr 99.5 1.1E-14 3.7E-19 83.6 5.0 55 12-71 3-57 (71)
19 2cte_A Vigilin; K homology typ 99.5 9.3E-15 3.2E-19 87.8 2.2 56 11-71 14-69 (94)
20 2jvz_A KH type-splicing, FAR u 99.5 1.9E-14 6.6E-19 92.2 3.8 57 14-71 2-58 (164)
21 1j4w_A FUSE binding protein; s 99.5 3E-14 1E-18 92.6 3.8 59 13-71 103-161 (174)
22 1j4w_A FUSE binding protein; s 99.4 2.2E-14 7.7E-19 93.2 2.3 56 13-71 2-57 (174)
23 2ctm_A Vigilin; K homology typ 99.4 6E-14 2E-18 84.6 3.0 57 11-71 14-70 (95)
24 2jzx_A Poly(RC)-binding protei 99.4 3.3E-14 1.1E-18 91.1 1.6 58 12-71 87-144 (160)
25 2jzx_A Poly(RC)-binding protei 99.4 4.6E-14 1.6E-18 90.5 2.2 55 12-71 3-57 (160)
26 3krm_A Insulin-like growth fac 99.4 1.7E-13 5.8E-18 88.0 3.6 59 11-71 82-141 (163)
27 2anr_A Neuro-oncological ventr 99.4 7.7E-14 2.6E-18 90.8 1.6 59 12-71 102-160 (178)
28 2jvz_A KH type-splicing, FAR u 99.4 1.3E-13 4.3E-18 88.3 1.8 55 14-71 91-145 (164)
29 2ctk_A Vigilin; K homology typ 99.4 1.6E-13 5.6E-18 83.9 2.1 53 13-70 16-68 (104)
30 2qnd_A FMR1 protein; KH domain 99.2 5.1E-12 1.7E-16 80.8 2.0 58 15-72 68-128 (144)
31 2ctj_A Vigilin; K homology typ 99.1 1.1E-11 3.9E-16 74.7 2.1 57 10-71 13-70 (95)
32 1k1g_A SF1-BO isoform; splicin 99.1 1.5E-10 5.1E-15 73.4 4.7 44 11-54 4-53 (131)
33 3n89_A Defective in GERM LINE 99.1 6.4E-11 2.2E-15 86.1 3.0 62 11-72 27-92 (376)
34 2ctf_A Vigilin; K homology typ 99.0 1.2E-10 4E-15 71.0 2.7 53 12-72 25-78 (102)
35 2cpq_A FragIle X mental retard 98.9 3.7E-10 1.3E-14 67.9 1.4 51 11-69 12-63 (91)
36 2yqr_A KIAA0907 protein; struc 98.8 4.2E-09 1.4E-13 65.9 4.3 42 12-53 10-58 (119)
37 2bl5_A MGC83862 protein, quaki 98.8 1.9E-09 6.7E-14 69.1 2.1 41 14-54 2-48 (140)
38 2qnd_A FMR1 protein; KH domain 98.6 7E-09 2.4E-13 66.1 0.8 53 13-71 3-55 (144)
39 2e3u_A PH-DIM2P, hypothetical 98.5 3.2E-08 1.1E-12 67.2 1.6 49 14-70 34-82 (219)
40 2e3u_A PH-DIM2P, hypothetical 98.4 5.1E-08 1.7E-12 66.2 0.1 38 24-71 139-176 (219)
41 3n89_A Defective in GERM LINE 98.3 1.7E-07 5.9E-12 68.1 2.5 61 12-72 184-247 (376)
42 1tua_A Hypothetical protein AP 98.3 1.6E-07 5.5E-12 62.7 1.3 48 14-69 4-51 (191)
43 3u1k_A Polyribonucleotide nucl 98.2 6.5E-07 2.2E-11 68.5 3.5 49 12-69 565-613 (630)
44 3v69_A Protein filia; RNA-bind 98.2 7.8E-07 2.7E-11 56.9 3.1 55 13-71 55-109 (140)
45 1tua_A Hypothetical protein AP 98.1 2.1E-07 7.2E-12 62.2 -1.1 39 23-71 107-145 (191)
46 4aid_A Polyribonucleotide nucl 97.7 7.4E-06 2.5E-10 63.6 1.3 41 13-53 569-609 (726)
47 2cxc_A NUSA; transcription ter 96.6 0.00087 3E-08 42.8 1.9 41 13-53 35-75 (144)
48 3cdi_A Polynucleotide phosphor 96.5 0.00045 1.5E-08 53.6 0.0 41 13-53 559-599 (723)
49 1e3p_A Guanosine pentaphosphat 96.3 0.00025 8.6E-09 55.3 -2.4 40 15-54 599-638 (757)
50 2asb_A Transcription elongatio 95.6 0.0081 2.8E-07 41.5 3.1 42 13-54 183-224 (251)
51 2cxc_A NUSA; transcription ter 95.5 0.0017 5.9E-08 41.4 -0.5 40 11-50 100-139 (144)
52 1hh2_P NUSA, N utilization sub 95.0 0.014 4.8E-07 41.8 2.8 42 11-52 300-341 (344)
53 1k0r_A NUSA; two component arr 94.7 0.018 6E-07 41.7 2.6 43 12-54 305-347 (366)
54 1wh9_A 40S ribosomal protein S 92.9 0.022 7.7E-07 33.6 0.4 27 15-41 36-62 (92)
55 2pt7_G HP1451, hypothetical pr 91.6 0.045 1.5E-06 35.1 0.6 29 15-43 34-62 (152)
56 3u5c_D RP13, YS3, 40S ribosoma 86.0 0.2 6.9E-06 34.3 0.7 27 15-41 45-71 (240)
57 3iev_A GTP-binding protein ERA 85.5 0.31 1.1E-05 33.3 1.5 37 13-49 239-284 (308)
58 3j20_C 30S ribosomal protein S 85.1 0.19 6.4E-06 33.8 0.2 36 15-50 41-83 (210)
59 2asb_A Transcription elongatio 84.9 0.2 6.8E-06 34.5 0.2 32 23-54 126-158 (251)
60 3iz6_B 40S ribosomal protein S 84.2 0.2 7E-06 34.0 0.1 27 15-41 45-71 (227)
61 2xzm_C KH domain containing pr 83.7 0.31 1E-05 33.5 0.8 29 14-42 47-75 (243)
62 1k0r_A NUSA; two component arr 82.5 0.31 1.1E-05 35.2 0.5 31 23-53 249-280 (366)
63 3r8n_C 30S ribosomal protein S 80.6 0.22 7.4E-06 33.4 -0.9 35 16-50 63-101 (206)
64 2zkq_c 40S ribosomal protein S 79.0 0.27 9.4E-06 33.7 -0.8 28 15-42 45-72 (243)
65 3i1m_C 30S ribosomal protein S 78.7 0.27 9.1E-06 33.6 -0.9 33 16-48 64-100 (233)
66 2vqe_C 30S ribosomal protein S 78.3 0.47 1.6E-05 32.4 0.2 27 16-42 64-90 (239)
67 3bbn_C Ribosomal protein S3; s 77.5 0.38 1.3E-05 32.3 -0.4 27 16-42 72-98 (218)
68 3gku_A Probable RNA-binding pr 76.2 0.46 1.6E-05 32.1 -0.3 29 16-44 94-122 (225)
69 1wf3_A GTP-binding protein; GT 73.9 0.54 1.8E-05 32.2 -0.4 34 16-49 232-274 (301)
70 1go3_E DNA-directed RNA polyme 66.6 3.2 0.00011 26.4 2.0 38 13-53 6-55 (187)
71 1hh2_P NUSA, N utilization sub 65.4 2 6.8E-05 30.7 1.0 31 23-53 245-276 (344)
72 1ega_A Protein (GTP-binding pr 55.0 2.1 7.1E-05 29.1 -0.4 29 14-42 231-260 (301)
73 2z0s_A Probable exosome comple 44.1 14 0.00048 24.5 2.3 36 17-52 151-186 (235)
74 2ba0_A Archeal exosome RNA bin 42.7 9.4 0.00032 25.3 1.3 36 18-53 140-175 (229)
75 2kie_A Inositol polyphosphate 41.1 14 0.00047 22.7 1.7 25 37-66 79-103 (124)
76 2je6_I RRP4, exosome complex R 33.1 7.8 0.00027 26.2 -0.3 36 18-53 159-194 (251)
77 2ja9_A Exosome complex exonucl 30.7 11 0.00039 24.1 0.2 36 18-53 95-131 (175)
78 2cp9_A EF-TS, EF-TSMT, elongat 23.2 37 0.0013 18.4 1.4 14 34-47 11-24 (64)
79 3big_A Fructose-1,6-bisphospha 21.7 67 0.0023 23.0 2.7 21 34-55 171-191 (338)
80 1oi0_A AF2198, hypothetical pr 21.3 49 0.0017 19.3 1.8 14 20-33 22-35 (124)
81 1y14_B B16, RPB7, DNA-directed 21.2 8.3 0.00028 24.2 -1.8 21 16-36 26-46 (171)
82 3r8s_P 50S ribosomal protein L 21.1 1E+02 0.0034 18.6 3.1 31 6-36 17-54 (114)
83 2xx6_A SPBC2 prophage-derived 20.3 88 0.003 19.1 2.9 23 15-37 45-67 (142)
No 1
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.73 E-value=1.7e-18 Score=99.98 Aligned_cols=59 Identities=32% Similarity=0.559 Sum_probs=54.6
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..++++.||.+++|+||||+|++|++|+++|||+|+|++++++.++..+|.|+|+|+|+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~ 60 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPA 60 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHH
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHH
Confidence 46789999999999999999999999999999999999877677889999999999864
No 2
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.69 E-value=3.4e-18 Score=101.34 Aligned_cols=59 Identities=34% Similarity=0.567 Sum_probs=54.4
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..+++|.||.+.+|+||||+|++|++|+++|||+|+|+++.++.++..+|.|+|+|+++
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~ 60 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPA 60 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHH
Confidence 35789999999999999999999999999999999999876667889999999999864
No 3
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.68 E-value=2.1e-17 Score=96.95 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=53.3
Q ss_pred CCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 10 ADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 10 ~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
.....+++|.||.+++|.||||+|++|++|+++|||+|+|.++ .++..+|.|+|+|+++
T Consensus 2 ~g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~~r~v~I~G~~~ 60 (82)
T 1wvn_A 2 LGSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAA 60 (82)
T ss_dssp CTTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHH
T ss_pred CCCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC---CCCCCceEEEEEcCHH
Confidence 3557899999999999999999999999999999999999864 3678999999999874
No 4
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.67 E-value=4.1e-17 Score=95.80 Aligned_cols=58 Identities=26% Similarity=0.467 Sum_probs=52.4
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
...++.++.||.+++|.||||+|++|++|+++|||+|+|+++ .++..+|.|+|+|+++
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~ 61 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQD 61 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHH
Confidence 456899999999999999999999999999999999999864 3678899999999864
No 5
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.67 E-value=7.3e-17 Score=97.01 Aligned_cols=64 Identities=31% Similarity=0.386 Sum_probs=56.0
Q ss_pred ccCCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 8 IRADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 8 ~~~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
..++...+.+|.||.+++|+||||+|++|++|+++|||+|+|.+++... ...+|.|+|+|+++.
T Consensus 9 ~~~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~r~v~I~G~~~~ 72 (94)
T 1x4m_A 9 GDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYK 72 (94)
T ss_dssp CCCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS-SCSCEEEEEEECTTT
T ss_pred CCCCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC-CCCceEEEEEeCHHH
Confidence 3567889999999999999999999999999999999999999865422 347999999998764
No 6
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.67 E-value=1.5e-17 Score=96.03 Aligned_cols=55 Identities=24% Similarity=0.453 Sum_probs=50.4
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..+.++|+||.+.+|.||||+|++|++|+++|||+|+|+++ +.++|.|+|+|+++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~ 57 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTN 57 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHH
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHH
Confidence 45789999999999999999999999999999999999975 36899999999864
No 7
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=94.95 Aligned_cols=67 Identities=27% Similarity=0.366 Sum_probs=57.2
Q ss_pred CCCcccCCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 4 KSPFIRADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 4 ~~~~~~~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
++.+..++.....+|.||.+++|+||||+|++|++|+++|||+|+|.+++. .+...+|.|+|+|+|+
T Consensus 4 ~~~~~~g~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~er~v~I~G~~~ 70 (85)
T 2opv_A 4 HDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPY 70 (85)
T ss_dssp CSSCCCSCSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC-SSTTSCEEEEEEECHH
T ss_pred cccCCCCCCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC-CCCCCceEEEEEeCHH
Confidence 444555667788999999999999999999999999999999999998653 2467899999999764
No 8
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.66 E-value=2e-17 Score=95.79 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=52.0
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
...+++|.||.+++|.||||+|++|++|+++|||+|+|.++ .++..+|.|+|+|+|+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~ 59 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAA 59 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHH
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHH
Confidence 45789999999999999999999999999999999999963 4678999999999865
No 9
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-17 Score=96.00 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=51.9
Q ss_pred cCCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 9 RADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 9 ~~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
+.++..+++|.||.+++|+||||+|++||+|+++|||+|+|++.+ .++.++|+|+++.
T Consensus 5 ~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~ 62 (83)
T 2dgr_A 5 SSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPEN 62 (83)
T ss_dssp CSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTT
T ss_pred CCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHH
Confidence 346678999999999999999999999999999999999998644 3689999999965
No 10
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.63 E-value=1.3e-16 Score=95.62 Aligned_cols=59 Identities=31% Similarity=0.472 Sum_probs=53.2
Q ss_pred CCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 10 ADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 10 ~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
....++++|.||.+++|+||||+|++|++|+++|||+|+|.++. ++..+|.|+|+|+++
T Consensus 11 ~~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e 69 (92)
T 1x4n_A 11 QRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPE 69 (92)
T ss_dssp CCCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHH
T ss_pred CCCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHH
Confidence 35568999999999999999999999999999999999999754 467899999999864
No 11
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.63 E-value=8.1e-17 Score=95.88 Aligned_cols=59 Identities=25% Similarity=0.461 Sum_probs=53.3
Q ss_pred CCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 10 ADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 10 ~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
+...+++++.||.+++|.||||+|++|++|+++|||+|+|++. .++..+|.|+|+|+++
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e 68 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQD 68 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHH
Confidence 3568899999999999999999999999999999999999864 3678899999999865
No 12
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-16 Score=97.31 Aligned_cols=57 Identities=21% Similarity=0.420 Sum_probs=51.1
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
+++|.||.+++|+||||+|++|++|+++|||+|+|.++.+...+..+|.|+|+|+++
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e 64 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQ 64 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHH
Confidence 789999999999999999999999999999999999865434556899999999765
No 13
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.59 E-value=3.2e-16 Score=102.19 Aligned_cols=61 Identities=48% Similarity=0.761 Sum_probs=56.3
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
++.++++|+||.+++|.||||+|++|++|+++|||+|+|++.+++.++..+|.|+|+|+++
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~ 63 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 63 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH
Confidence 5678999999999999999999999999999999999999877777899999999999864
No 14
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.59 E-value=1.5e-15 Score=92.74 Aligned_cols=64 Identities=27% Similarity=0.384 Sum_probs=53.9
Q ss_pred cccCCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 7 FIRADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 7 ~~~~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
.+......+++|.||.+++|.||||+|++|++|+++|||+|+|.+..+. ....+|.|+|+|+++
T Consensus 8 ~~s~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~~~V~I~G~~~ 71 (104)
T 1we8_A 8 ILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG-TLLLSRLIKISGTQK 71 (104)
T ss_dssp CCSSSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC-SSSSEEEEEEEEEHH
T ss_pred ccCCCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC-CCCCcceEEEEcCHH
Confidence 3445567889999999999999999999999999999999999975431 134699999999875
No 15
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=8.2e-16 Score=94.59 Aligned_cols=55 Identities=27% Similarity=0.504 Sum_probs=49.4
Q ss_pred eEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 14 CQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 14 ~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
.+++|.||.+++|+||||+|++||+|+++|||+|+|.++. ++..+|.|+|+|+++
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e 65 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPD 65 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHH
Confidence 4789999999999999999999999999999999998754 457899999999864
No 16
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.54 E-value=2.6e-15 Score=96.58 Aligned_cols=57 Identities=28% Similarity=0.498 Sum_probs=51.9
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..+++|+||.+.+|.||||+|++|++|+++|||+|+|++++ .++..+|.|+|+|+|+
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~--~~~~~~r~v~I~G~~e 58 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE--TPDSKVRMVIITGPPE 58 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCS--STTCSEEEEEEEECHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCC--CCCCCceEEEEEcCHH
Confidence 35789999999999999999999999999999999999754 4788999999999764
No 17
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.53 E-value=6.4e-15 Score=89.15 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=51.6
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..++++|.||.+++|.||||+|++|++|+++|||+|+|+++++ ++..+|.|+|+|+++
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e 72 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEK 72 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHH
Confidence 3578999999999999999999999999999999999998764 455789999999743
No 18
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.53 E-value=1.1e-14 Score=83.57 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=49.3
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
...+.++.||.+++|.|||++|++|++|+++|||+|+|++++ ..+|.|+|+|.++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~ 57 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQ 57 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSH
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHH
Confidence 456889999999999999999999999999999999999755 3679999999853
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=9.3e-15 Score=87.81 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=49.5
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
...++.+|.||.+++|.|||++|++|++|+++|||+|+|++.+ ..++.|+|+|+++
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e 69 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKE 69 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHH
Confidence 5578999999999999999999999999999999999998643 3468899999853
No 20
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=92.16 Aligned_cols=57 Identities=32% Similarity=0.473 Sum_probs=50.7
Q ss_pred eEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 14 CQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 14 ~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
++++|+||.+++|.||||+|++|++|+++|||+|++.++.. .++..+|.|+|+|+++
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~-~~~~~~r~v~I~G~~~ 58 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPY 58 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTT-SSSSSCEEEEEEECHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCC-CCCCCceEEEEEcCHH
Confidence 57899999999999999999999999999999999987542 3567899999999764
No 21
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.46 E-value=3e-14 Score=92.65 Aligned_cols=59 Identities=27% Similarity=0.478 Sum_probs=51.7
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
...++|.||.+++|+||||+|++|++|+++|||+|+|.++....++..+|.|+|+|+++
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~ 161 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQ 161 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHH
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHH
Confidence 46889999999999999999999999999999999999765434457899999999764
No 22
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.45 E-value=2.2e-14 Score=93.22 Aligned_cols=56 Identities=27% Similarity=0.497 Sum_probs=50.3
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.++. ++..+|.|+|+|+++
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~---~~~~~r~v~I~G~~~ 57 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD---GTTPERIAQITGPPD 57 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT---TSCSEEEEEEEECHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC---CCCCccEEEEEeCHH
Confidence 46789999999999999999999999999999999998642 467899999999864
No 23
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=6e-14 Score=84.63 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=50.8
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
...++.++.||.+++|.|||++|++|++|+++|||+|+|+++++ ..+|.|+|+|.++
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~----~~~~~V~I~G~~e 70 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA----PDPNCVTVTGLPE 70 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC----SCTTEEEEESCHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC----CCCcEEEEEcCHH
Confidence 56789999999999999999999999999999999999987653 3578999999863
No 24
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.3e-14 Score=91.10 Aligned_cols=58 Identities=24% Similarity=0.519 Sum_probs=52.4
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
....+++.||.+++|+||||+|++|++|+++|||+|+|.++ ..++..+|.|+|+|+++
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~--~~~~~~~~~v~I~G~~~ 144 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD--MLPNSTERAITIAGIPQ 144 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC--CSTTCCEEEEEEEECHH
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC--CCCCCCceEEEEEcCHH
Confidence 35899999999999999999999999999999999999864 35778999999999765
No 25
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=4.6e-14 Score=90.46 Aligned_cols=55 Identities=24% Similarity=0.453 Sum_probs=49.9
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..+.++|+||.+.+|.||||+|++|++|+++|||+|+|+++ +..+|.|+|+|+++
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~r~v~I~G~~~ 57 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTN 57 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-----TTTEEEEEEEEEHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-----CCCceEEEEEeCHH
Confidence 46789999999999999999999999999999999999964 35799999999853
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=88.00 Aligned_cols=59 Identities=25% Similarity=0.421 Sum_probs=49.9
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCC-ceeEEEEeccCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVY-QVITLFLLSRPG 71 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~-~er~v~I~G~p~ 71 (78)
....+.+|.||.+++|.||||+|++|++|+++|||+|+|++++. ++. .++.|+|+|+++
T Consensus 82 ~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~--~~~~~~~~v~I~G~~~ 141 (163)
T 3krm_A 82 EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT--PDENDQVIVKIIGHFY 141 (163)
T ss_dssp CCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC--CCTTSEEEEEEEECHH
T ss_pred CCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCC--CCCCCceEEEEEeCHH
Confidence 34567899999999999999999999999999999999987542 334 445899999864
No 27
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.38 E-value=7.7e-14 Score=90.83 Aligned_cols=59 Identities=34% Similarity=0.504 Sum_probs=50.4
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
....++|.||.+++|+||||+|++|++|+++|||+|+|.+..+ .++..+|.|+|+|+++
T Consensus 102 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~-~~~~~~~~v~I~G~~~ 160 (178)
T 2anr_A 102 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD-GINLQNRVVTVSGEPE 160 (178)
T ss_dssp GGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-----CCEEEEEEESSHH
T ss_pred CceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC-CCCCCceEEEEEcCHH
Confidence 3478999999999999999999999999999999999987542 3567899999999874
No 28
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-13 Score=88.34 Aligned_cols=55 Identities=27% Similarity=0.504 Sum_probs=49.4
Q ss_pred eEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 14 CQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 14 ~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
.++++.||.+++|.||||+|++|++|+++|||+|+|.+.. +...+|.|+|+|+++
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~---~~~~~~~v~I~G~~~ 145 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPD 145 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC---TTSSEEEEEEESCHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC---CCCCcEEEEEEcCHH
Confidence 4588999999999999999999999999999999998754 456799999999865
No 29
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.36 E-value=1.6e-13 Score=83.88 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=47.8
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRP 70 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p 70 (78)
....+|.||.+++|.|||++|++|++|+++|||+|+|+++++ ..+.|+|+|++
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-----~~~~V~I~G~~ 68 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDIIAITGLA 68 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-----TCCEEEEEECH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC-----CcceEEEEcCH
Confidence 478999999999999999999999999999999999997652 45689999986
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.18 E-value=5.1e-12 Score=80.82 Aligned_cols=58 Identities=21% Similarity=0.381 Sum_probs=47.3
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHHhCC-eEEEecCCCCCCCCce--eEEEEeccCCC
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKDTGS-KIKMSKANDFYPVYQV--ITLFLLSRPGF 72 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga-~I~i~~~~~~~~g~~e--r~v~I~G~p~~ 72 (78)
..++.||.+.+|++|||+|.||+.+++.||| +|+|.+..+......+ +.|+|+|++++
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~ 128 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDS 128 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHH
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHH
Confidence 4889999999999999999999999999997 9999986543212233 46999998753
No 31
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=1.1e-11 Score=74.71 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=50.1
Q ss_pred CCCeeEEEEEecCCceeeEEecCCchHHHHHHHh-CCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 10 ADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDT-GSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 10 ~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~T-ga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..+..+..|.||.++++.|||++|.+|++|+++| ||+|+|++++ ...+.|+|+|...
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-----~~~~~V~I~G~~~ 70 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-----SGSDTVVIRGPSS 70 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-----TTCCEEEEESCHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-----CCcceEEEEcCHH
Confidence 3567889999999999999999999999999999 9999998654 4677899999753
No 32
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=1.5e-10 Score=73.41 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=39.4
Q ss_pred CCeeEEEEEecCC------ceeeEEecCCchHHHHHHHhCCeEEEecCCC
Q psy14680 11 DGVCQIKILVPSY------AAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54 (78)
Q Consensus 11 ~~~~~~~l~vP~~------~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~ 54 (78)
...++.+++||.+ ++|.|||++|++||+|+++|||+|.|...+.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS 53 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGS 53 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTT
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcc
Confidence 3568999999988 9999999999999999999999999987553
No 33
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.05 E-value=6.4e-11 Score=86.07 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=52.1
Q ss_pred CCeeEEEEEecCCceeeEEecCC--chHHHHHHHhCCeEEEecCC--CCCCCCceeEEEEeccCCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGG--ETIAQIQKDTGSKIKMSKAN--DFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G--~~Ik~i~~~Tga~I~i~~~~--~~~~g~~er~v~I~G~p~~ 72 (78)
.+.+++++.||..+++.||||+| ++|++|+++|||+|++++.+ ...+......|+|+|.+++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~en 92 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGD 92 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHH
Confidence 67899999999999999999999 99999999999999998654 1112245568999998753
No 34
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.02 E-value=1.2e-10 Score=71.00 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=46.3
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHH-hCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKD-TGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~-Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
...+.++.||..+.+.|||++|++|++|+++ ++++|++++ .++.|+|+|.++.
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--------~~~~ItI~G~~~~ 78 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--------GEDKITLEGPTED 78 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--------SSCEEEEEECHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--------CCCEEEEECCHHH
Confidence 3478999999999999999999999999997 599999985 3568999998753
No 35
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.89 E-value=3.7e-10 Score=67.87 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=44.8
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCe-EEEecCCCCCCCCceeEEEEecc
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSK-IKMSKANDFYPVYQVITLFLLSR 69 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~-I~i~~~~~~~~g~~er~v~I~G~ 69 (78)
...+...|.||.+++|.+||++|++|++|+++||++ |.|.+ .+..|+|.|.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------ddG~V~I~g~ 63 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--------DTGTFRIYGE 63 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--------TTTEEEEEES
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------CCCEEEEEEC
Confidence 456889999999999999999999999999999998 99973 2467889884
No 36
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=4.2e-09 Score=65.88 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=37.2
Q ss_pred CeeEEEEEecCC-------ceeeEEecCCchHHHHHHHhCCeEEEecCC
Q psy14680 12 GVCQIKILVPSY-------AAGAIIGKGGETIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 12 ~~~~~~l~vP~~-------~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~ 53 (78)
..++.+++||.. ++|.|||++|.+||+|+++|||+|.|..++
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~g 58 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKG 58 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBT
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCC
Confidence 357889999875 789999999999999999999999998554
No 37
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.78 E-value=1.9e-09 Score=69.12 Aligned_cols=41 Identities=34% Similarity=0.494 Sum_probs=36.8
Q ss_pred eEEEEEecCCc------eeeEEecCCchHHHHHHHhCCeEEEecCCC
Q psy14680 14 CQIKILVPSYA------AGAIIGKGGETIAQIQKDTGSKIKMSKAND 54 (78)
Q Consensus 14 ~~~~l~vP~~~------vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~ 54 (78)
++.+++||... +|.|||++|+++|+|+++|||+|.|...++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS 48 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGS 48 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTS
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCC
Confidence 57789998744 999999999999999999999999998764
No 38
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.61 E-value=7e-09 Score=66.15 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=40.2
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
.++.++.||.+.+|++||++|++|++|++++| |++.... ..+++.+...++|+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~----~~~~~~i~~~~~p~ 55 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD----EDTCTFHIYGEDQD 55 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE----TTTTEEEEEESSHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC----CCchheeeccCCHH
Confidence 56899999999999999999999999999999 6554322 13455555555554
No 39
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.49 E-value=3.2e-08 Score=67.24 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=42.9
Q ss_pred eEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccC
Q psy14680 14 CQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRP 70 (78)
Q Consensus 14 ~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p 70 (78)
...++.||.+.+|.|||++|++|+.|+++|||+|++.. .++.|+|.++.
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--------~~g~V~I~~~~ 82 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--------ETGEVWITSTK 82 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--------TTCEEEEEECT
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--------CCCEEEEecCC
Confidence 45689999999999999999999999999999999973 24568888764
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.36 E-value=5.1e-08 Score=66.25 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=34.0
Q ss_pred ceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 24 AAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 24 ~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
.+|+||||+|++|+.|++.|||+|.|.. +.|.|.|+++
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----------~~v~i~G~~~ 176 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----------KTVAIIGNPI 176 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----------TEEEEEECHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----------eEEEEEeCHH
Confidence 6899999999999999999999999972 4599999864
No 41
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.34 E-value=1.7e-07 Score=68.09 Aligned_cols=61 Identities=10% Similarity=0.178 Sum_probs=45.8
Q ss_pred CeeEEEEEecCCceeeEEecCC--chHHHHHHHhCCeEEEecCCCCCC-CCceeEEEEeccCCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGG--ETIAQIQKDTGSKIKMSKANDFYP-VYQVITLFLLSRPGF 72 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G--~~Ik~i~~~Tga~I~i~~~~~~~~-g~~er~v~I~G~p~~ 72 (78)
..+++.+.|+..++..||||+| ..|++|+++|||+|++++.++... ......|+|+|++++
T Consensus 184 ~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~ 247 (376)
T 3n89_A 184 NNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDN 247 (376)
T ss_dssp SCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHH
T ss_pred cceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHH
Confidence 4689999999999999999999 456999999999999987653111 123567999998753
No 42
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.29 E-value=1.6e-07 Score=62.72 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=41.9
Q ss_pred eEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEecc
Q psy14680 14 CQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSR 69 (78)
Q Consensus 14 ~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~ 69 (78)
..+++.||...+|.|||++|++++.|++.+|++|++.. .++.++|..+
T Consensus 4 ~~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--------~~~~V~i~t~ 51 (191)
T 1tua_A 4 PRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--------ENSMVIVEPE 51 (191)
T ss_dssp CCEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--------TTTEEEEEES
T ss_pred cceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--------CCCeEEEEeC
Confidence 34789999999999999999999999999999999973 4667788743
No 43
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.23 E-value=6.5e-07 Score=68.51 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=42.2
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEecc
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSR 69 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~ 69 (78)
-.....+.||.+++|.|||+||++||.|+++|||+|.|.++ -.|.|.+.
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~---------G~V~I~~~ 613 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE---------ETFSVFAP 613 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS---------SEEEEEES
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC---------cEEEEEeC
Confidence 34578899999999999999999999999999999999843 35777774
No 44
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.21 E-value=7.8e-07 Score=56.91 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=47.7
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..++.+.+.+..++.|+|++|+.|+.|+..|++.|+|.+-. + +.+-.|+|.|+|.
T Consensus 55 ~dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~---s-~g~tEVtIfG~~~ 109 (140)
T 3v69_A 55 EDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG---P-ERRAEIWIFGPPP 109 (140)
T ss_dssp SSCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC---T-TSCEEEEEESCHH
T ss_pred CCCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC---C-CCcEEEEEECCHH
Confidence 45678899999999999999999999999999999999753 2 4677899999874
No 45
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.12 E-value=2.1e-07 Score=62.16 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=33.7
Q ss_pred CceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 23 YAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 23 ~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
...|+||||+|.+++.|+..|||+|.|.. +.+.|.|+++
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----------~~v~i~G~~~ 145 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE----------YEVAIIGDYE 145 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS----------SEEEEEEEHH
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC----------CEEEEEeChH
Confidence 35899999999999999999999999972 2688888764
No 46
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.73 E-value=7.4e-06 Score=63.62 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=0.8
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~ 53 (78)
.....+.||.+++|.|||+||.+|++|+++||++|.|.+++
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~ddG 609 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDDG 609 (726)
T ss_dssp CC---------------------------------------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECCc
Confidence 34678899999999999999999999999999999998654
No 47
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.59 E-value=0.00087 Score=42.84 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=36.9
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~ 53 (78)
.-.+.++|+...+|+.||++|++|+.|+++.|-+|.|-...
T Consensus 35 ~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s 75 (144)
T 2cxc_A 35 NNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS 75 (144)
T ss_dssp GTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC
T ss_pred CCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC
Confidence 35678899999999999999999999999999999998744
No 48
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.47 E-value=0.00045 Score=53.64 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=0.0
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~ 53 (78)
.....+.||.++++.+||++|.+|+.|.++||+.|.|..++
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg 599 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 599 (723)
T ss_dssp -----------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecCCc
Confidence 34567789999999999999999999999999999998654
No 49
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.28 E-value=0.00025 Score=55.32 Aligned_cols=40 Identities=33% Similarity=0.546 Sum_probs=13.1
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCC
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~ 54 (78)
...+.||.+.+|.+||++|.+|++|+++||+.|.|..++.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~ 638 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDDGT 638 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecCCce
Confidence 3467899999999999999999999999999999986543
No 50
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.63 E-value=0.0081 Score=41.53 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.0
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~ 54 (78)
.....+.||....++-|||+|.|++--.+-||.+|.|....+
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 357889999999999999999999999999999999987544
No 51
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=95.54 E-value=0.0017 Score=41.43 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=36.1
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEe
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMS 50 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~ 50 (78)
++.....+.||.+..++.|||+|.|++-..+-||.+|.|.
T Consensus 100 ~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 100 NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 3567788999999999999999999999999999998775
No 52
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.99 E-value=0.014 Score=41.84 Aligned_cols=42 Identities=31% Similarity=0.391 Sum_probs=37.6
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKA 52 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~ 52 (78)
+......+.||....++-|||+|.|++--.+-||.+|.|...
T Consensus 300 ~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 300 KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 344578899999999999999999999999999999999753
No 53
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.69 E-value=0.018 Score=41.74 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=38.7
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~ 54 (78)
......+.||....++.|||+|.|++-..+-||.+|.|....+
T Consensus 305 ~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 305 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred CCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 3557889999999999999999999999999999999987543
No 54
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=92.91 E-value=0.022 Score=33.59 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=22.2
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHH
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQK 41 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~ 41 (78)
.+++.|-...-|.|||++|..|.+|++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 466777788899999999998887655
No 55
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=91.58 E-value=0.045 Score=35.10 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=23.8
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHHh
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKDT 43 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~T 43 (78)
++.+-+-.+..|.+|||.|.+++.||--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 45666778899999999999999987543
No 56
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=85.99 E-value=0.2 Score=34.34 Aligned_cols=27 Identities=11% Similarity=0.434 Sum_probs=22.2
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHH
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQK 41 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~ 41 (78)
.+++.|-...-|.|||++|..|++|++
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~ 71 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTL 71 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 356777788899999999999987654
No 57
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=85.47 E-value=0.31 Score=33.30 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=27.0
Q ss_pred eeEEEEEecC-CceeeEEecCCchHHHHHH--------HhCCeEEE
Q psy14680 13 VCQIKILVPS-YAAGAIIGKGGETIAQIQK--------DTGSKIKM 49 (78)
Q Consensus 13 ~~~~~l~vP~-~~vG~IIGk~G~~Ik~i~~--------~Tga~I~i 49 (78)
.+...++|.. ++-|.||||+|+.||+|.. ..|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4666677765 4669999999999997754 45666554
No 58
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.13 E-value=0.19 Score=33.82 Aligned_cols=36 Identities=28% Similarity=0.604 Sum_probs=26.3
Q ss_pred EEEEEecCCceeeEEecCCchHHHHH----HHhC---CeEEEe
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQ----KDTG---SKIKMS 50 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~----~~Tg---a~I~i~ 50 (78)
.+++.|-...-|.|||++|..|++|+ +.++ .+|.|.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 35666777788999999999998865 4555 455554
No 59
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=84.86 E-value=0.2 Score=34.55 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=27.9
Q ss_pred CceeeEEecCCchHHHH-HHHhCCeEEEecCCC
Q psy14680 23 YAAGAIIGKGGETIAQI-QKDTGSKIKMSKAND 54 (78)
Q Consensus 23 ~~vG~IIGk~G~~Ik~i-~~~Tga~I~i~~~~~ 54 (78)
+-+|+-||++|++|+.| ++-.|-+|.|-.-.+
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~ 158 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD 158 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC
Confidence 56799999999999999 888899999987543
No 60
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=84.20 E-value=0.2 Score=34.02 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=22.7
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHH
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQK 41 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~ 41 (78)
.+++.|-...-|.|||++|..|++|++
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 466778888899999999999988654
No 61
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=83.73 E-value=0.31 Score=33.47 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=23.5
Q ss_pred eEEEEEecCCceeeEEecCCchHHHHHHH
Q psy14680 14 CQIKILVPSYAAGAIIGKGGETIAQIQKD 42 (78)
Q Consensus 14 ~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~ 42 (78)
..+++.|-...-|.|||++|..|++|++.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 34677777888999999999999887653
No 62
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=82.49 E-value=0.31 Score=35.21 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=28.1
Q ss_pred CceeeEEecCCchHHHHHHHh-CCeEEEecCC
Q psy14680 23 YAAGAIIGKGGETIAQIQKDT-GSKIKMSKAN 53 (78)
Q Consensus 23 ~~vG~IIGk~G~~Ik~i~~~T-ga~I~i~~~~ 53 (78)
+-+|+.||++|++|+.|.++- |-+|.|-...
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s 280 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD 280 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC
Confidence 568999999999999999999 9999998754
No 63
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=80.63 E-value=0.22 Score=33.37 Aligned_cols=35 Identities=23% Similarity=0.540 Sum_probs=25.3
Q ss_pred EEEEecCCceeeEEecCCchHHHHH----HHhCCeEEEe
Q psy14680 16 IKILVPSYAAGAIIGKGGETIAQIQ----KDTGSKIKMS 50 (78)
Q Consensus 16 ~~l~vP~~~vG~IIGk~G~~Ik~i~----~~Tga~I~i~ 50 (78)
+++.|-...-|.|||++|+.|++|+ +.++.+++|.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 4556666788999999999998765 4566554443
No 64
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=78.95 E-value=0.27 Score=33.71 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=23.0
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHH
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKD 42 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~ 42 (78)
.+++.|-...-|.|||++|..|++|++.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 4566777788899999999999887664
No 65
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=78.74 E-value=0.27 Score=33.56 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=24.2
Q ss_pred EEEEecCCceeeEEecCCchHHHHH----HHhCCeEE
Q psy14680 16 IKILVPSYAAGAIIGKGGETIAQIQ----KDTGSKIK 48 (78)
Q Consensus 16 ~~l~vP~~~vG~IIGk~G~~Ik~i~----~~Tga~I~ 48 (78)
+++.|-...-|.|||++|+.|++|+ +.++.+++
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~ 100 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQ 100 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceE
Confidence 4556667788999999999998765 45665433
No 66
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=78.31 E-value=0.47 Score=32.40 Aligned_cols=27 Identities=30% Similarity=0.658 Sum_probs=20.9
Q ss_pred EEEEecCCceeeEEecCCchHHHHHHH
Q psy14680 16 IKILVPSYAAGAIIGKGGETIAQIQKD 42 (78)
Q Consensus 16 ~~l~vP~~~vG~IIGk~G~~Ik~i~~~ 42 (78)
+++.|-...-|.|||++|+.|++|++.
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 345555677899999999999887654
No 67
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=77.47 E-value=0.38 Score=32.35 Aligned_cols=27 Identities=7% Similarity=0.210 Sum_probs=20.6
Q ss_pred EEEEecCCceeeEEecCCchHHHHHHH
Q psy14680 16 IKILVPSYAAGAIIGKGGETIAQIQKD 42 (78)
Q Consensus 16 ~~l~vP~~~vG~IIGk~G~~Ik~i~~~ 42 (78)
+++.|-...-|.|||++|..|++|++.
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 445556677799999999999887653
No 68
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=76.16 E-value=0.46 Score=32.14 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=23.3
Q ss_pred EEEEecCCceeeEEecCCchHHHHHHHhC
Q psy14680 16 IKILVPSYAAGAIIGKGGETIAQIQKDTG 44 (78)
Q Consensus 16 ~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tg 44 (78)
+.+.|.....|.+|||.|.+++.||--+.
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~ 122 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVS 122 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHH
Confidence 44555567799999999999999987664
No 69
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=73.93 E-value=0.54 Score=32.17 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=23.4
Q ss_pred EEEEec-CCceeeEEecCCchHHHHHH--------HhCCeEEE
Q psy14680 16 IKILVP-SYAAGAIIGKGGETIAQIQK--------DTGSKIKM 49 (78)
Q Consensus 16 ~~l~vP-~~~vG~IIGk~G~~Ik~i~~--------~Tga~I~i 49 (78)
..+.|. .++-+.|||++|+.||+|.. ..|++|.+
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 344443 36669999999999997654 45666554
No 70
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=66.65 E-value=3.2 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.8
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHH-HHHh--------CC---eEEEecCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQI-QKDT--------GS---KIKMSKAN 53 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i-~~~T--------ga---~I~i~~~~ 53 (78)
.+...+.||.+..|.+|| .+|+++ ++++ |+ .+.+...+
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g 55 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIG 55 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEEC
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeecc
Confidence 356678999999999999 699995 9999 88 67777643
No 71
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=65.37 E-value=2 Score=30.68 Aligned_cols=31 Identities=42% Similarity=0.604 Sum_probs=27.5
Q ss_pred CceeeEEecCCchHHHHHHHh-CCeEEEecCC
Q psy14680 23 YAAGAIIGKGGETIAQIQKDT-GSKIKMSKAN 53 (78)
Q Consensus 23 ~~vG~IIGk~G~~Ik~i~~~T-ga~I~i~~~~ 53 (78)
+-+|+.||.+|.+|+.+.++- |-+|.|-.-.
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s 276 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS 276 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC
Confidence 567999999999999999998 9999998744
No 72
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=55.02 E-value=2.1 Score=29.06 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=20.6
Q ss_pred eEEEEEec-CCceeeEEecCCchHHHHHHH
Q psy14680 14 CQIKILVP-SYAAGAIIGKGGETIAQIQKD 42 (78)
Q Consensus 14 ~~~~l~vP-~~~vG~IIGk~G~~Ik~i~~~ 42 (78)
+...++|- .++-+.|||++|+.||+|..+
T Consensus 231 i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ 260 (301)
T 1ega_A 231 INGLILVEREGQKKMVIGNKGAKIKTIGIE 260 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEEECCceEEEECCCcHHHHHHHHH
Confidence 44555553 355599999999999876544
No 73
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=44.11 E-value=14 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=30.9
Q ss_pred EEEecCCceeeEEecCCchHHHHHHHhCCeEEEecC
Q psy14680 17 KILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKA 52 (78)
Q Consensus 17 ~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~ 52 (78)
-+.++...+..++|++|..+..|.+.+++.|.+=.+
T Consensus 151 vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~N 186 (235)
T 2z0s_A 151 IVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARN 186 (235)
T ss_dssp EEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETT
T ss_pred EEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCC
Confidence 346788889999999999999999889999998653
No 74
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=42.70 E-value=9.4 Score=25.34 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=30.3
Q ss_pred EEecCCceeeEEecCCchHHHHHHHhCCeEEEecCC
Q psy14680 18 ILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 18 l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~ 53 (78)
+.++...+..++|+++..++.|.+.+++.|.|=.++
T Consensus 140 ~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG 175 (229)
T 2ba0_A 140 VAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNG 175 (229)
T ss_dssp EECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTTS
T ss_pred EEECHHHhHHHhcCCchHHHHhcccCCeEEEEECCc
Confidence 367777888999999999999999999999886543
No 75
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=41.14 E-value=14 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.5
Q ss_pred HHHHHHhCCeEEEecCCCCCCCCceeEEEE
Q psy14680 37 AQIQKDTGSKIKMSKANDFYPVYQVITLFL 66 (78)
Q Consensus 37 k~i~~~Tga~I~i~~~~~~~~g~~er~v~I 66 (78)
-.|-..|||||.|.-+- +.||.+.|
T Consensus 79 IDIasntgcKIRvqgd~-----t~ErlfEI 103 (124)
T 2kie_A 79 IDIASNSGCKIRVQGDW-----IRERRFEI 103 (124)
T ss_dssp CCGGGCSSEEEEEESSS-----CSCEEEEE
T ss_pred EeccCCCCcEEEEeccc-----chhheeeC
Confidence 35677899999998542 58999887
No 76
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=33.07 E-value=7.8 Score=26.18 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=27.0
Q ss_pred EEecCCceeeEEecCCchHHHHHHHhCCeEEEecCC
Q psy14680 18 ILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 18 l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~ 53 (78)
+.++...+..++|+++..+..|.+.++|.|.|-.++
T Consensus 159 ~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG 194 (251)
T 2je6_I 159 IDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANNG 194 (251)
T ss_dssp EECCGGGHHHHHCGGGHHHHHHHTTC---CEECTTS
T ss_pred EEECHHHhHHHhcCcchHHHHhcccCCeEEEEECCc
Confidence 356777888999999999999998899999886543
No 77
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=30.66 E-value=11 Score=24.11 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=30.2
Q ss_pred EEecCCceeeEEecCCc-hHHHHHHHhCCeEEEecCC
Q psy14680 18 ILVPSYAAGAIIGKGGE-TIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 18 l~vP~~~vG~IIGk~G~-~Ik~i~~~Tga~I~i~~~~ 53 (78)
+.||...+-+++|+.|. .++.|.+.+++.|.+=.++
T Consensus 95 ~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG 131 (175)
T 2ja9_A 95 IDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNG 131 (175)
T ss_dssp EECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETTT
T ss_pred EEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECCc
Confidence 56788888899998888 8888998999999987544
No 78
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=23.17 E-value=37 Score=18.39 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=11.6
Q ss_pred chHHHHHHHhCCeE
Q psy14680 34 ETIAQIQKDTGSKI 47 (78)
Q Consensus 34 ~~Ik~i~~~Tga~I 47 (78)
+.|++||+.||+-+
T Consensus 11 ~~Vk~LRe~TGag~ 24 (64)
T 2cp9_A 11 ELLMKLRRKTGYSF 24 (64)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCH
Confidence 57899999999854
No 79
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism, hydrolase manganese; 1.85A {Escherichia coli} PDB: 2r8t_A 3bih_A 1ni9_A 3d1r_A*
Probab=21.66 E-value=67 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.7
Q ss_pred chHHHHHHHhCCeEEEecCCCC
Q psy14680 34 ETIAQIQKDTGSKIKMSKANDF 55 (78)
Q Consensus 34 ~~Ik~i~~~Tga~I~i~~~~~~ 55 (78)
.-|++||+ +||+|++..++|.
T Consensus 171 ~lI~eiR~-~GArI~li~DGDV 191 (338)
T 3big_A 171 AVIAEMQQ-LGVRVFAIPDGDV 191 (338)
T ss_dssp HHHHHHHH-HTCEEEEESSCSH
T ss_pred HHHHHHHH-cCCeEEEeCCccH
Confidence 55788887 9999999999873
No 80
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=21.35 E-value=49 Score=19.30 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=12.3
Q ss_pred ecCCceeeEEecCC
Q psy14680 20 VPSYAAGAIIGKGG 33 (78)
Q Consensus 20 vP~~~vG~IIGk~G 33 (78)
.|.+.+|.++|+.+
T Consensus 22 ~P~E~cGlL~g~~~ 35 (124)
T 1oi0_A 22 HPDEFIALLSGSKD 35 (124)
T ss_dssp TTSCCEEEEEESTT
T ss_pred CCCeeEEEEecccC
Confidence 48899999999986
No 81
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=21.16 E-value=8.3 Score=24.19 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=17.5
Q ss_pred EEEEecCCceeeEEecCCchH
Q psy14680 16 IKILVPSYAAGAIIGKGGETI 36 (78)
Q Consensus 16 ~~l~vP~~~vG~IIGk~G~~I 36 (78)
+.+.|+.+++|.+||++|.+|
T Consensus 26 i~~~i~~~~i~~vig~~G~~I 46 (171)
T 1y14_B 26 LKTKLLEEVEGSCTGKFGYIL 46 (171)
T ss_dssp HHHHHHHHHTTEEETTTEEEE
T ss_pred HHHHHHHHHcCcCcCCceEEE
Confidence 445667789999999999988
No 82
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=21.09 E-value=1e+02 Score=18.57 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=22.8
Q ss_pred CcccCCCeeEEEEEecC-------CceeeEEecCCchH
Q psy14680 6 PFIRADGVCQIKILVPS-------YAAGAIIGKGGETI 36 (78)
Q Consensus 6 ~~~~~~~~~~~~l~vP~-------~~vG~IIGk~G~~I 36 (78)
+.......+.+.+.++. .+.|.+|.+.|.-+
T Consensus 17 P~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~ 54 (114)
T 3r8s_P 17 PSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGL 54 (114)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGG
T ss_pred CccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCC
Confidence 33445666788888875 58899999998754
No 83
>2xx6_A SPBC2 prophage-derived deoxyuridine 5'-triphospha nucleotidohydrolase YOSS; 1.74A {Bacillus subtilis} PDB: 2baz_A 2xy3_A* 2y1t_A* 2xcd_A 2xce_A*
Probab=20.26 E-value=88 Score=19.06 Aligned_cols=23 Identities=4% Similarity=0.121 Sum_probs=19.3
Q ss_pred EEEEEecCCceeeEEecCCchHH
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIA 37 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik 37 (78)
-+.+.+|...+|.|.+|.|-..|
T Consensus 45 g~~i~iP~g~~~~i~pRSgla~k 67 (142)
T 2xx6_A 45 GVAMELPEGYEAHVVPRSSTYKN 67 (142)
T ss_dssp CEEEECCTTEEEEEEECTTHHHH
T ss_pred CEEEECCCCeEEEEEeCCCcccc
Confidence 35778899999999999997655
Done!