Query psy14680
Match_columns 78
No_of_seqs 116 out of 1046
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 17:59:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14680.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14680hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dtja_ d.51.1.1 (A:) Neuro-on 99.7 2.6E-19 1.9E-23 102.2 3.7 59 14-72 3-61 (74)
2 d1j4wa2 d.51.1.1 (A:104-174) F 99.7 2.7E-19 1.9E-23 101.5 3.3 58 15-72 2-59 (71)
3 d1x4ma1 d.51.1.1 (A:8-88) Far 99.7 3.6E-18 2.6E-22 98.8 5.4 64 8-72 2-65 (81)
4 d1wvna1 d.51.1.1 (A:5-74) Poly 99.7 2E-18 1.5E-22 97.7 2.6 57 13-72 1-57 (70)
5 d1zzka1 d.51.1.1 (A:11-85) HnR 99.7 5.5E-18 4E-22 96.4 4.0 58 12-72 2-59 (75)
6 d1j4wa1 d.51.1.1 (A:1-74) Far 99.7 3.1E-18 2.3E-22 97.4 2.3 57 13-72 2-58 (74)
7 d2axya1 d.51.1.1 (A:11-81) Pol 99.7 2.8E-18 2E-22 97.2 1.6 55 13-72 3-57 (71)
8 d1we8a_ d.51.1.1 (A:) Tudor an 99.6 8.9E-17 6.5E-21 96.6 4.1 64 8-72 9-72 (104)
9 d1x4na1 d.51.1.1 (A:8-86) Far 99.6 4.6E-17 3.3E-21 93.5 2.3 59 11-72 5-63 (79)
10 d2ctla1 d.51.1.1 (A:8-91) Vigi 99.5 8.9E-16 6.5E-20 89.0 2.8 58 13-72 9-66 (84)
11 d1viga_ d.51.1.1 (A:) Vigilin 99.5 5.1E-15 3.7E-19 83.6 3.7 56 12-72 3-58 (71)
12 d2ctea1 d.51.1.1 (A:8-88) Vigi 99.5 1.9E-15 1.4E-19 87.2 1.6 57 11-72 7-63 (81)
13 d2ctma1 d.51.1.1 (A:8-88) Vigi 99.5 8.8E-15 6.4E-19 84.3 2.4 58 11-72 7-64 (81)
14 d2ctja1 d.51.1.1 (A:8-89) Vigi 99.4 1.7E-14 1.3E-18 83.1 0.9 57 11-72 7-64 (82)
15 d2ctka1 d.51.1.1 (A:8-98) Vigi 99.4 3.1E-14 2.3E-18 83.5 1.0 55 13-72 9-63 (91)
16 d2cpqa1 d.51.1.1 (A:212-289) F 99.3 7.6E-14 5.6E-18 80.3 0.3 52 11-69 5-56 (78)
17 d1e3ha4 d.52.3.1 (A:579-632) P 99.3 2.1E-13 1.5E-17 73.8 -0.0 48 15-71 4-51 (54)
18 d2ba0a3 d.51.1.1 (A:136-219) E 99.3 3.9E-13 2.8E-17 78.3 1.0 47 16-71 3-49 (84)
19 d1tuaa1 d.51.1.1 (A:1-84) Hypo 99.2 2.7E-12 1.9E-16 74.8 1.5 37 16-52 5-41 (84)
20 d2ctfa1 d.51.1.1 (A:7-96) Vigi 99.1 1.6E-11 1.2E-15 71.8 3.9 54 11-72 18-72 (90)
21 d2je6i3 d.51.1.1 (I:153-221) E 99.1 3.8E-12 2.8E-16 71.5 -0.1 44 17-69 4-47 (69)
22 d2z0sa2 d.51.1.1 (A:148-234) E 99.0 1.6E-10 1.2E-14 67.5 3.0 45 17-70 4-48 (87)
23 d1k1ga_ d.51.1.1 (A:) RNA spli 98.8 1.3E-09 9.5E-14 66.9 2.4 42 13-54 2-49 (122)
24 d2bl5a1 d.51.1.1 (A:1-134) Qua 98.7 2.9E-09 2.1E-13 66.4 1.8 41 14-54 2-48 (134)
25 d1tuaa2 d.51.1.1 (A:85-188) Hy 98.5 7.4E-09 5.4E-13 62.0 0.2 38 24-71 23-60 (104)
26 d2asba3 d.52.3.1 (A:263-329) T 97.4 4E-05 2.9E-09 42.1 2.4 43 11-53 23-65 (67)
27 d1hh2p3 d.52.3.1 (P:277-344) T 97.4 5.9E-05 4.3E-09 41.5 2.8 41 12-52 25-65 (68)
28 d1wh9a_ d.52.3.1 (A:) Ribosoma 95.5 0.0014 1E-07 37.6 0.4 29 15-43 36-64 (92)
29 d1egaa2 d.52.3.1 (A:183-295) G 94.4 0.0043 3.1E-07 36.5 0.5 31 13-43 48-79 (113)
30 d2uubc1 d.52.3.1 (C:2-106) Rib 94.1 0.0037 2.7E-07 36.4 -0.2 29 15-43 62-90 (105)
31 d1wf3a2 d.52.3.1 (A:181-298) G 93.1 0.01 7.6E-07 35.1 0.5 37 13-49 49-94 (118)
32 d2qalc1 d.52.3.1 (C:1-105) Rib 90.4 0.015 1.1E-06 33.8 -0.9 28 15-42 62-89 (105)
33 d2asba2 d.52.3.1 (A:184-262) T 90.1 0.034 2.4E-06 30.9 0.5 29 23-51 47-76 (79)
34 d1hh2p2 d.52.3.1 (P:199-276) T 88.7 0.066 4.8E-06 29.6 1.0 28 23-50 47-75 (78)
35 d2ja9a2 d.51.1.1 (A:152-236) R 84.5 0.097 7.1E-06 29.0 0.2 36 18-53 5-41 (85)
36 d1efub3 a.5.2.2 (B:1-54) Elong 50.1 3.6 0.00026 20.6 1.4 14 34-47 6-19 (54)
37 d1aipc1 a.5.2.2 (C:2-53) Elong 48.4 3.9 0.00028 20.3 1.4 14 34-47 4-17 (52)
38 d1xb2b1 a.5.2.2 (B:56-111) Elo 47.7 4.1 0.0003 20.5 1.4 14 34-47 6-19 (56)
39 d1oi0a_ c.97.3.1 (A:) Hypothet 32.2 11 0.0008 21.0 1.8 13 21-33 23-35 (121)
40 d2hq9a1 b.45.1.1 (A:1-148) Hyp 26.4 40 0.0029 18.4 3.7 42 27-71 46-87 (148)
41 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 26.3 40 0.0029 17.5 3.3 25 15-39 3-27 (77)
42 d1wxma1 d.15.1.5 (A:8-80) A-Ra 25.9 36 0.0026 17.5 3.1 25 15-39 2-26 (73)
43 d1hc7a3 d.68.5.1 (A:404-477) C 23.4 12 0.00091 19.3 0.8 34 36-72 30-63 (74)
No 1
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.75 E-value=2.6e-19 Score=102.20 Aligned_cols=59 Identities=32% Similarity=0.555 Sum_probs=54.5
Q ss_pred eEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 14 CQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 14 ~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
..+++.||.+++|.||||+|++|++|+++|||+|+|+++.+..++..+|.|+|+|++++
T Consensus 3 ~~i~i~VP~~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~ 61 (74)
T d1dtja_ 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAA 61 (74)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHH
T ss_pred EEEEEEeCHHHcceeECCCChhHHHHHHHcCCEEEEccCCCCCCCCCceEEEEEeCHHH
Confidence 46899999999999999999999999999999999998877778899999999998753
No 2
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.75 E-value=2.7e-19 Score=101.46 Aligned_cols=58 Identities=28% Similarity=0.474 Sum_probs=53.0
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
+++|.||++.+|+||||+|++|++|+++|||+|+|+++.+..++..+|.|+|+|+|++
T Consensus 2 ~~~~~IP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~ 59 (71)
T d1j4wa2 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ 59 (71)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHH
T ss_pred EEEEEEChHhcceEECCCCcChHHHHhhcCcEEEEeecCCCCCCCCeEEEEEEeCHHH
Confidence 4689999999999999999999999999999999998766667789999999999864
No 3
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.72 E-value=3.6e-18 Score=98.83 Aligned_cols=64 Identities=31% Similarity=0.393 Sum_probs=56.8
Q ss_pred ccCCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 8 IRADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 8 ~~~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
..++...+.+|.||..++|+||||+|++|++|+++|||+|+|+++.+ .++..+|.|+|+|+|++
T Consensus 2 g~~~~~~~~~i~Vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~-~~~~~~r~v~I~G~~~~ 65 (81)
T d1x4ma1 2 GDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-QNTGADKPLRITGDPYK 65 (81)
T ss_dssp CCCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC-CSSCSCEEEEEEECTTT
T ss_pred CCCCccEEEEEEECHHHcCeeECCCCchHHHHHHHhCCeEEEccCCC-CCCCCceEEEEEeCHHH
Confidence 35678899999999999999999999999999999999999987543 35678999999999975
No 4
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.70 E-value=2e-18 Score=97.65 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=51.5
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
+.+.+|.||.+++|+||||+|++|++|+++|||+|+|+++. ++..+|.|+|+|+|++
T Consensus 1 q~T~~i~VP~~~vg~iIGk~G~~I~~I~~~tga~I~i~~~~---~~~~~r~v~I~G~~~~ 57 (70)
T d1wvna1 1 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV---EGSSGRQVTITGSAAS 57 (70)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC---TTCSEEEEEEEECHHH
T ss_pred CeEEEEEEChHhcceeECCCChHHHHHHHHcCcEEEEcCCC---CCCCcEEEEEEeCHHH
Confidence 36889999999999999999999999999999999998654 5788999999999764
No 5
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=5.5e-18 Score=96.44 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=52.2
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
..++.++.||.+++|.||||+|++|++|+++|||+|+|.++. ++..+|.|+|+|++++
T Consensus 2 p~~t~~i~VP~~~vg~iIG~~G~~I~~I~~~sga~I~i~~~~---~~~~~r~i~I~G~~~~ 59 (75)
T d1zzka1 2 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL---EGSEDRIITITGTQDQ 59 (75)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTT---SCSSEEEEEEEECHHH
T ss_pred CcEEEEEEEChHhcCeeECCCCchHHHHHhhcCCeEEEccCC---CCCCceEEEEEeCHHH
Confidence 357889999999999999999999999999999999998654 5789999999998753
No 6
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=3.1e-18 Score=97.45 Aligned_cols=57 Identities=26% Similarity=0.469 Sum_probs=51.7
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
...+++.||.+++|+||||+|++|++|+++|||+|+|.++. ++..+|.|+|+|++++
T Consensus 2 ~~~~~i~VP~~~vg~iIGk~G~~I~~I~~~tga~I~i~~~~---~~~~~r~v~I~G~~~~ 58 (74)
T d1j4wa1 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD---GTTPERIAQITGPPDR 58 (74)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT---TSCSEEEEEEEECHHH
T ss_pred CeEEEEEeCHHHCCeeECCCCcHHHHHHHHcCCEEEeccCC---CCCCeeEEEEEeCHHH
Confidence 46899999999999999999999999999999999998764 5678999999998753
No 7
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.68 E-value=2.8e-18 Score=97.23 Aligned_cols=55 Identities=25% Similarity=0.495 Sum_probs=50.1
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
.++++|+||.+.+|.||||+|++|++|+++|||+|++++++ .+||.|+|+|+|++
T Consensus 3 ~vt~~i~vp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~-----~~er~v~I~G~~~~ 57 (71)
T d2axya1 3 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNA 57 (71)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSC-----CSEEEEEEEECHHH
T ss_pred cEEEEEEECHHHcCeEECCCChhHHHHHHHhCCEEEEcCCC-----CCcceEEEEECHHH
Confidence 57899999999999999999999999999999999998643 57999999998763
No 8
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.63 E-value=8.9e-17 Score=96.63 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=55.2
Q ss_pred ccCCCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 8 IRADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 8 ~~~~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
......++.+|.||..++|+||||+|.+|++|+++|||+|+|+++.+. ....+|.|+|+|++++
T Consensus 9 ~~~~~~v~~~i~IP~~~vg~vIGk~G~~Ik~I~~~tga~I~i~~~~~~-~~~~~r~v~I~G~~~~ 72 (104)
T d1we8a_ 9 LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG-TLLLSRLIKISGTQKE 72 (104)
T ss_dssp CSSSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC-SSSSEEEEEEEEEHHH
T ss_pred cCCCCCEEEEEEECHHHhcceECCCCcchHHHHHHcCCEEEECCCCCC-CCCCccEEEEEeCHHH
Confidence 345667889999999999999999999999999999999999876542 3457899999998764
No 9
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.62 E-value=4.6e-17 Score=93.54 Aligned_cols=59 Identities=31% Similarity=0.457 Sum_probs=53.3
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
...++.++.||..++|.|||++|.+|++|+++|||+|+|+++. ++..+|.|+|+|+|++
T Consensus 5 ~~~~t~~i~IP~~~~g~iIG~~G~~i~~I~~~tg~~I~i~~~~---~~~~~r~v~I~G~~~~ 63 (79)
T d1x4na1 5 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPES 63 (79)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHH
T ss_pred CCcEEEEEEEChHhhcceECCCchhHHHHHHHhCCEEEEcCCC---CCCCceEEEEEeCHHH
Confidence 4568899999999999999999999999999999999998754 5788999999998754
No 10
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=8.9e-16 Score=88.99 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=51.6
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
.+++++.||..++|.|||++|++|++|+++|||+|++++.+. ++..++.|+|+|++++
T Consensus 9 ~~~~~i~Vp~~~~~~iIG~~G~~i~~I~~~t~~~I~~~~~~~--~~~~~~~i~I~G~~e~ 66 (84)
T d2ctla1 9 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKN 66 (84)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHH
T ss_pred cEEEEEEECHHHHhhhcCCCchhHHHHHHHhCCEEEECCCCC--CCCCcceEEEECCHHH
Confidence 467899999999999999999999999999999999987653 5678899999998653
No 11
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50 E-value=5.1e-15 Score=83.56 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=49.8
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
....+++.||..++|.|||++|++|++|+++|||+|++++++ ..++.|+|+|++++
T Consensus 3 ~~~~~ei~V~~~~~~~iIG~~G~~i~~I~~~tg~~I~i~~~~-----~~~~~v~I~G~~~~ 58 (71)
T d1viga_ 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQG 58 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHH
T ss_pred ceEEEEEEECHHHhcccCCCCCchHHHHHHHhCCEEEeCCCC-----CCCCEEEEECCHHH
Confidence 346789999999999999999999999999999999998643 57889999998764
No 12
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50 E-value=1.9e-15 Score=87.19 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=51.0
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
....+.++.||..++|+|||++|++|++|+++|||+|++++.+ ..++.|+|+|++++
T Consensus 7 ~~~~t~~i~Ip~~~~~~iIG~~G~~i~~I~~~tg~~I~~p~~~-----~~~~~v~I~G~~~~ 63 (81)
T d2ctea1 7 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEG 63 (81)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHH
T ss_pred cCceEEEEEECHHHHhhccCCCChhHHHHHHHhCCEEEECCCC-----CCCCEEEEEeCHHH
Confidence 4567899999999999999999999999999999999998654 57889999998764
No 13
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.46 E-value=8.8e-15 Score=84.32 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
...++.++.||..++|.|||++|++|++|+++|||+|+++++++ ..++.|+|+|++++
T Consensus 7 ~~~~t~~i~Vp~~~~~~iIG~~G~~i~~I~~~tg~~I~~p~~~~----~~~~~v~I~G~~~~ 64 (81)
T d2ctma1 7 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA----PDPNCVTVTGLPEN 64 (81)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC----SCTTEEEEESCHHH
T ss_pred hcCEEEEEEECHHHHhhccCCCCccHHHHHHHhCCEEEeCCccC----CCCCEEEEeCCHHH
Confidence 45677899999999999999999999999999999999987653 23578999998754
No 14
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.40 E-value=1.7e-14 Score=83.07 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=49.7
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHH-hCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKD-TGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~-Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
.+..+.++.||..++|+||||+|++|++|+++ ++|+|++++.+ ..++.|+|+|++++
T Consensus 7 ~~~~t~~i~Vp~~~~~~iIGk~G~~I~~I~~~~~~~~I~~~~~~-----~~~~~v~I~G~~~~ 64 (82)
T d2ctja1 7 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-----SGSDTVVIRGPSSD 64 (82)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-----TTCCEEEEESCHHH
T ss_pred cCcEEEEEEECHHHHhhcCCCCCccHHHHHHHcCCcEEEEeCCC-----CCCceEEEeCCHHH
Confidence 45678999999999999999999999999987 59999998644 57899999998753
No 15
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.38 E-value=3.1e-14 Score=83.48 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=49.4
Q ss_pred eeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 13 ~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
.++.++.||..++|.|||++|++|++|+++|||+|.+++.+ ..++.|+|+|++++
T Consensus 9 ~vt~~i~Vp~~~~~~iIG~~G~~i~~I~~~tg~~I~~p~~~-----~~~~~v~I~G~~~~ 63 (91)
T d2ctka1 9 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-----LQSDIIAITGLAAN 63 (91)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-----TTCCEEEEEECHHH
T ss_pred CEEEEEEECHHHHhHhcCCCchhHHHHHHHhCCEEEECCCC-----CCcceEEEECCHHH
Confidence 57899999999999999999999999999999999998654 56789999998753
No 16
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32 E-value=7.6e-14 Score=80.33 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=45.3
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEecc
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSR 69 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~ 69 (78)
...++.++.||.+++|+|||++|++|++|+++|||+|.+.++ .++.|.|.|.
T Consensus 5 ~~~~t~~i~Ip~~~ig~vIG~gG~~I~~I~~~tGa~i~i~~~-------~~g~v~I~g~ 56 (78)
T d2cpqa1 5 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-------DTGTFRIYGE 56 (78)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-------TTTEEEEEES
T ss_pred cCCceEEEEECHHHHHHHcCCChHHHHHHHHhcCcEEEEecC-------CCceEEEEEC
Confidence 345788999999999999999999999999999999998753 3467899984
No 17
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=99.26 E-value=2.1e-13 Score=73.83 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=15.2
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..++.||.+++|.|||+||.+||+|+++|||+|+|.+ +..|+|.|.-.
T Consensus 4 ~~~i~Ip~~kig~vIG~GG~~Ik~I~~~tga~I~i~d---------dg~v~I~a~~~ 51 (54)
T d1e3ha4 4 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------DGTIYIGAADG 51 (54)
T ss_dssp CC---------------------CHHHHSCCCC-----------------CCCCBSS
T ss_pred EEEEEeCHHHeeEEECCccHHHHHHHHHHCCEEEEeC---------CeEEEEEecCc
Confidence 3568899999999999999999999999999999974 45677777543
No 18
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.26 E-value=3.9e-13 Score=78.29 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=41.6
Q ss_pred EEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 16 ~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
.-+.||.+.+|.||||+|++|++|+++|||+|+|.+ ++.|+|+|+++
T Consensus 3 ~vi~Ip~~~ig~IIG~gG~~I~~I~~~tg~~I~i~~---------~g~v~I~G~~e 49 (84)
T d2ba0a3 3 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ---------NGLIWVNGDRR 49 (84)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT---------TSEEEEESCHH
T ss_pred EEEEEChhhcceeeCCcHHHHHHHHHHHCCEEEECC---------CCEEEEEeCHH
Confidence 357899999999999999999999999999999974 34689999874
No 19
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=99.17 E-value=2.7e-12 Score=74.77 Aligned_cols=37 Identities=35% Similarity=0.501 Sum_probs=34.3
Q ss_pred EEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecC
Q psy14680 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKA 52 (78)
Q Consensus 16 ~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~ 52 (78)
+.+.||.+.+|.||||+|++|++|+++|||+|+|..+
T Consensus 5 i~i~ip~~~ig~vIG~gG~~Ik~i~~~tg~~I~Id~d 41 (84)
T d1tuaa1 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE 41 (84)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT
T ss_pred EEEEeCHHHcCeeecCCchhHHHHHHHHCCEEEEEcC
Confidence 4589999999999999999999999999999999753
No 20
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.14 E-value=1.6e-11 Score=71.83 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=47.0
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHH-hCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKD-TGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~-Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
+...+.++.||..+++.|||++|++|++|+++ ++++|+++++ +..|+|+|+++.
T Consensus 18 ~~~~t~~v~VP~~~h~~iIG~~G~~I~~i~~~~~~v~I~~~~~--------~~~v~i~G~~~~ 72 (90)
T d2ctfa1 18 NSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG--------EDKITLEGPTED 72 (90)
T ss_dssp CCCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS--------SCEEEEEECHHH
T ss_pred CCcEEEEEEcCHHHHhhcCCCCchhHHHHHHHcCCcEEeeCCC--------CceEEEeCCHHH
Confidence 55789999999999999999999999999999 4899999742 456999998753
No 21
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.10 E-value=3.8e-12 Score=71.52 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=33.4
Q ss_pred EEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEecc
Q psy14680 17 KILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSR 69 (78)
Q Consensus 17 ~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~ 69 (78)
-+.||.+.+|.||||+|++|++|+++|||+|+|.++ ..|+|+|.
T Consensus 4 vi~Ip~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~---------g~v~I~g~ 47 (69)
T d2je6i3 4 VIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANN---------GRIWATCP 47 (69)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHTTC---CEECTT---------SEEEC---
T ss_pred EEEEChhhccceECCchhHHHHHHHHHCCEEEEcCC---------CEEEEEeC
Confidence 367899999999999999999999999999999742 24889885
No 22
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=98.96 E-value=1.6e-10 Score=67.55 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=39.6
Q ss_pred EEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccC
Q psy14680 17 KILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRP 70 (78)
Q Consensus 17 ~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p 70 (78)
-+.||.+.+|.|||++|++|+.|+++|||+|.|.+++ .|.|.|..
T Consensus 4 vi~I~~~ki~~vIG~gG~~ik~i~~~t~~~I~I~d~G---------~V~I~g~~ 48 (87)
T d2z0sa2 4 IVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARNG---------RIHLECPN 48 (87)
T ss_dssp EEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETTT---------EEEEECSC
T ss_pred EEEEChhhcceeECCCCcHHHHHHHHHCCEEEECCCc---------EEEEEeCC
Confidence 4689999999999999999999999999999998543 48888864
No 23
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.76 E-value=1.3e-09 Score=66.94 Aligned_cols=42 Identities=26% Similarity=0.494 Sum_probs=37.8
Q ss_pred eeEEEEEecCCc------eeeEEecCCchHHHHHHHhCCeEEEecCCC
Q psy14680 13 VCQIKILVPSYA------AGAIIGKGGETIAQIQKDTGSKIKMSKAND 54 (78)
Q Consensus 13 ~~~~~l~vP~~~------vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~ 54 (78)
+++.+++||... +|.|||.+|+++|+|+++|||+|.|.-.++
T Consensus 2 k~~~Ki~iP~~~~P~fNfvG~IlGPrG~t~K~Le~eTgckI~IrGrGS 49 (122)
T d1k1ga_ 2 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGS 49 (122)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTT
T ss_pred ceeEEEecCCccCCCCCeeeeEeCCCCchHHHHHHHHCCEEEEEecCC
Confidence 568899999864 999999999999999999999999987664
No 24
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=98.66 E-value=2.9e-09 Score=66.40 Aligned_cols=41 Identities=34% Similarity=0.481 Sum_probs=37.4
Q ss_pred eEEEEEecC------CceeeEEecCCchHHHHHHHhCCeEEEecCCC
Q psy14680 14 CQIKILVPS------YAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54 (78)
Q Consensus 14 ~~~~l~vP~------~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~ 54 (78)
++.+++||. .++|.|||.+|+++|+|+++|||+|.|.-.++
T Consensus 2 l~eKv~IP~~~~P~~NfvG~IiGPrG~t~K~le~eTg~kI~IrGrGS 48 (134)
T d2bl5a1 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGS 48 (134)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTS
T ss_pred cceEEeCCCCCCCCCCeeEEEECCCCchHHHHHHHHCCEEEEEecCC
Confidence 577899986 58899999999999999999999999998775
No 25
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=98.50 E-value=7.4e-09 Score=62.02 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=31.2
Q ss_pred ceeeEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 24 AAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 24 ~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
..|+|||++|.+|+.|++.|||+|.|..+ .+.|.|+++
T Consensus 23 ~~GrIIG~gGktik~Ie~~Tg~~I~I~d~----------~v~iig~~e 60 (104)
T d1tuaa2 23 IKGRIIGEGGRARRTIEEMTDTYINVGEY----------EVAIIGDYE 60 (104)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS----------EEEEEEEHH
T ss_pred HhcceeCCCcHHHHHHHHHHCCeEEEeCC----------eEEEEECch
Confidence 47999999999999999999999999631 266667653
No 26
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.39 E-value=4e-05 Score=42.07 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=38.4
Q ss_pred CCeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecCC
Q psy14680 11 DGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 11 ~~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~~ 53 (78)
.......+.||.+..+..|||+|.|++-..+-||.+|.|-.+.
T Consensus 23 e~~~~~~v~V~~~qls~AIGk~G~NvrLas~Ltg~~IdI~~es 65 (67)
T d2asba3 23 QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 65 (67)
T ss_dssp TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred CCCcEEEEEECcccccchhcCCceeHHHHHHHHCCEEEEEeCC
Confidence 3445788999999999999999999999999999999998654
No 27
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=97.36 E-value=5.9e-05 Score=41.47 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=36.9
Q ss_pred CeeEEEEEecCCceeeEEecCCchHHHHHHHhCCeEEEecC
Q psy14680 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKA 52 (78)
Q Consensus 12 ~~~~~~l~vP~~~vG~IIGk~G~~Ik~i~~~Tga~I~i~~~ 52 (78)
..-...+.||.+..+..|||+|.|++-..+-||.+|.|...
T Consensus 25 ~~~~~~v~V~~~qls~AIGk~G~NvrLas~Ltg~~idI~s~ 65 (68)
T d1hh2p3 25 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 65 (68)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEEECcccccccccCCcchHHHHHHHHCCEEeeEEc
Confidence 34468899999999999999999999999999999999753
No 28
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.45 E-value=0.0014 Score=37.62 Aligned_cols=29 Identities=14% Similarity=0.365 Sum_probs=25.2
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHHh
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKDT 43 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~T 43 (78)
.+++.|-...-|.||||+|++|++|++.-
T Consensus 36 ~i~I~I~tarPGivIGrkG~~I~~L~~~l 64 (92)
T d1wh9a_ 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceeeccCchhHHHHHHHH
Confidence 46788889999999999999999987654
No 29
>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=94.42 E-value=0.0043 Score=36.52 Aligned_cols=31 Identities=26% Similarity=0.242 Sum_probs=24.8
Q ss_pred eeEEEEEecC-CceeeEEecCCchHHHHHHHh
Q psy14680 13 VCQIKILVPS-YAAGAIIGKGGETIAQIQKDT 43 (78)
Q Consensus 13 ~~~~~l~vP~-~~vG~IIGk~G~~Ik~i~~~T 43 (78)
.+...++|+. ++-+.|||++|++||+|...+
T Consensus 48 ~I~a~I~V~~~sqk~IiIGk~G~~ik~I~~~a 79 (113)
T d1egaa2 48 DINGLILVEREGQKKMVIGNKGAKIKTIGIEA 79 (113)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEEECCcchhhhhhcccchHHHHHHHHH
Confidence 4777788877 555999999999999886543
No 30
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=94.11 E-value=0.0037 Score=36.40 Aligned_cols=29 Identities=28% Similarity=0.606 Sum_probs=24.1
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHHh
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKDT 43 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~T 43 (78)
.+++.|-...-|.|||++|+.|++|+++-
T Consensus 62 ~i~I~I~tarPG~iIGkkG~~i~~L~~~l 90 (105)
T d2uubc1 62 NVAVTVHVAKPGVVIGRGGERIRVLREEL 90 (105)
T ss_dssp CEECCEEESCHHHHHCSTTSHHHHHHHHH
T ss_pred cEEEEEEECCCceEEcCCchhHHHHHHHH
Confidence 36677777899999999999998887753
No 31
>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=93.06 E-value=0.01 Score=35.10 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=27.0
Q ss_pred eeEEEEEecC-CceeeEEecCCchHHHHH--------HHhCCeEEE
Q psy14680 13 VCQIKILVPS-YAAGAIIGKGGETIAQIQ--------KDTGSKIKM 49 (78)
Q Consensus 13 ~~~~~l~vP~-~~vG~IIGk~G~~Ik~i~--------~~Tga~I~i 49 (78)
.+...++|+. ++-+.|||++|++||+|. +.++++|.+
T Consensus 49 ~I~~~I~V~~~sqK~IiIGk~G~~ik~Ig~~aR~~le~~~~~kV~L 94 (118)
T d1wf3a2 49 YIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 94 (118)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEEEeCccchhhhhhccCchhHHHHHHHHHHHHHHHhCCCeEE
Confidence 4566778877 555999999999999765 445666644
No 32
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=90.43 E-value=0.015 Score=33.75 Aligned_cols=28 Identities=29% Similarity=0.604 Sum_probs=23.0
Q ss_pred EEEEEecCCceeeEEecCCchHHHHHHH
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQIQKD 42 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i~~~ 42 (78)
.+++.|-...-|.|||++|+.|.+|+++
T Consensus 62 ~i~V~I~tarPGviIG~~G~~i~~L~~~ 89 (105)
T d2qalc1 62 SIRVTIHTARPGIVIGKKGEDVEKLRKV 89 (105)
T ss_dssp CBCCEEEESCHHHHHCTTSHHHHHHHHH
T ss_pred cEEEEEEeCCCccEeccCcccHHHHHHH
Confidence 3566777789999999999999887754
No 33
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=90.11 E-value=0.034 Score=30.86 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=24.2
Q ss_pred CceeeEEecCCchHHHHHHHh-CCeEEEec
Q psy14680 23 YAAGAIIGKGGETIAQIQKDT-GSKIKMSK 51 (78)
Q Consensus 23 ~~vG~IIGk~G~~Ik~i~~~T-ga~I~i~~ 51 (78)
+-+|+.||.+|++|+.|.++- |-+|.|-.
T Consensus 47 DpvGacvG~~GsRI~~I~~eL~gEkIDii~ 76 (79)
T d2asba2 47 NAKGACIGPMGQRVRNVMSELSGEKIDIID 76 (79)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CceeEEECCCccHHHHHHHHhCCceEEEEE
Confidence 567999999999999987776 77787764
No 34
>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=88.66 E-value=0.066 Score=29.55 Aligned_cols=28 Identities=43% Similarity=0.662 Sum_probs=23.4
Q ss_pred CceeeEEecCCchHHHHHHHh-CCeEEEe
Q psy14680 23 YAAGAIIGKGGETIAQIQKDT-GSKIKMS 50 (78)
Q Consensus 23 ~~vG~IIGk~G~~Ik~i~~~T-ga~I~i~ 50 (78)
+-+|+.+|.+|++|+.|.++- |-+|.|-
T Consensus 47 DpvGacVG~~G~RI~~I~~eL~gEkIDii 75 (78)
T d1hh2p2 47 DPIGACIGEGGSRIAAILKELKGEKLDVL 75 (78)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEE
T ss_pred CeeEEEECCCchHHHHHHHHhCCceeEEE
Confidence 567999999999999988776 6777765
No 35
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=84.45 E-value=0.097 Score=29.03 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=31.7
Q ss_pred EEecCCceeeEEecCCc-hHHHHHHHhCCeEEEecCC
Q psy14680 18 ILVPSYAAGAIIGKGGE-TIAQIQKDTGSKIKMSKAN 53 (78)
Q Consensus 18 l~vP~~~vG~IIGk~G~-~Ik~i~~~Tga~I~i~~~~ 53 (78)
+-||..++-.+||++++ -++.|.+.++|.|.|-.++
T Consensus 5 ~~vs~~~~rrll~~~~~~ml~~l~~~~~~eI~VG~NG 41 (85)
T d2ja9a2 5 IDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNG 41 (85)
T ss_dssp EECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETTT
T ss_pred EEecHHHHHHHHcCCCChHHHHHHhhcCceEEEecCc
Confidence 56888899999999998 6888999999999998655
No 36
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=50.14 E-value=3.6 Score=20.60 Aligned_cols=14 Identities=14% Similarity=0.480 Sum_probs=11.7
Q ss_pred chHHHHHHHhCCeE
Q psy14680 34 ETIAQIQKDTGSKI 47 (78)
Q Consensus 34 ~~Ik~i~~~Tga~I 47 (78)
+-||+||+.||+-|
T Consensus 6 ~~iK~LR~~Tgag~ 19 (54)
T d1efub3 6 SLVKELRERTGAGM 19 (54)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCH
Confidence 46899999999865
No 37
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=48.35 E-value=3.9 Score=20.31 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=11.6
Q ss_pred chHHHHHHHhCCeE
Q psy14680 34 ETIAQIQKDTGSKI 47 (78)
Q Consensus 34 ~~Ik~i~~~Tga~I 47 (78)
+.||+||+.||+-|
T Consensus 4 elvK~LR~~Tga~~ 17 (52)
T d1aipc1 4 ELIKKLREATGAGM 17 (52)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCH
Confidence 46899999999865
No 38
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=47.74 E-value=4.1 Score=20.53 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=11.7
Q ss_pred chHHHHHHHhCCeE
Q psy14680 34 ETIAQIQKDTGSKI 47 (78)
Q Consensus 34 ~~Ik~i~~~Tga~I 47 (78)
+-|++||+.||+-|
T Consensus 6 ~lvk~LRe~Tga~~ 19 (56)
T d1xb2b1 6 ELLMKLRRKTGYSF 19 (56)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCH
Confidence 45899999999865
No 39
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=32.17 E-value=11 Score=21.04 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=11.9
Q ss_pred cCCceeeEEecCC
Q psy14680 21 PSYAAGAIIGKGG 33 (78)
Q Consensus 21 P~~~vG~IIGk~G 33 (78)
|.+.+|.|+|+.+
T Consensus 23 P~E~cGlL~G~~~ 35 (121)
T d1oi0a_ 23 PDEFIALLSGSKD 35 (121)
T ss_dssp TSCCEEEEEESTT
T ss_pred CceeEEEEEecCC
Confidence 8899999999987
No 40
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]}
Probab=26.40 E-value=40 Score=18.40 Aligned_cols=42 Identities=7% Similarity=0.062 Sum_probs=31.6
Q ss_pred eEEecCCchHHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCC
Q psy14680 27 AIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPG 71 (78)
Q Consensus 27 ~IIGk~G~~Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~ 71 (78)
.+-+..|..++.|++.--+.+.|.... +...-|.|.+.|+..
T Consensus 46 y~~t~~~~K~~~l~~np~Vs~~v~~~~---~~~~~~sV~v~G~a~ 87 (148)
T d2hq9a1 46 YAFSMPGKKIEWMRANPRVSVQVDEHG---QGRGWKSVVVDGRYE 87 (148)
T ss_dssp EEEECSSHHHHHHHHCCEEEEEEEEEC---STTCEEEEEEEEEEE
T ss_pred EEEeCchHHHHHHhCCCeEEEEEEecc---ccceeEEEEEEEEEE
Confidence 344667889999999888888887543 234678899999754
No 41
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.25 E-value=40 Score=17.47 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.9
Q ss_pred EEEEEecCCceeeEEecCCchHHHH
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQI 39 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i 39 (78)
++++++|+...-.+==|-|.+|++.
T Consensus 3 ~iRv~LPngq~T~V~vrpG~tird~ 27 (77)
T d1c1yb_ 3 TIRVFLPNKQRTVVNVRNGMSLHDC 27 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHH
T ss_pred eEEEECCCCCeEEEEecCCCCHHHH
Confidence 6899999999999999999999874
No 42
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.85 E-value=36 Score=17.46 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=22.6
Q ss_pred EEEEEecCCceeeEEecCCchHHHH
Q psy14680 15 QIKILVPSYAAGAIIGKGGETIAQI 39 (78)
Q Consensus 15 ~~~l~vP~~~vG~IIGk~G~~Ik~i 39 (78)
++++++|+...-.+==|-|.+|++.
T Consensus 2 ~iRv~LPngq~T~V~vrpG~tir~~ 26 (73)
T d1wxma1 2 TVKVYLPNKQRTVVTVRDGMSVYDS 26 (73)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHH
T ss_pred eEEEEcCCCCeEEEEecCCCCHHHH
Confidence 5789999999999999999999874
No 43
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]}
Probab=23.43 E-value=12 Score=19.30 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=21.8
Q ss_pred HHHHHHHhCCeEEEecCCCCCCCCceeEEEEeccCCC
Q psy14680 36 IAQIQKDTGSKIKMSKANDFYPVYQVITLFLLSRPGF 72 (78)
Q Consensus 36 Ik~i~~~Tga~I~i~~~~~~~~g~~er~v~I~G~p~~ 72 (78)
=.+|.++|++.|...+-.. +. ....+.+.|.|+.
T Consensus 30 E~~IKeet~at~rciP~~~--~~-~~~kCi~cGk~a~ 63 (74)
T d1hc7a3 30 ERLIQEETTATTRCVPFEA--EP-EEGFCVRCGRPSA 63 (74)
T ss_dssp HHHHHHHHCCEEEEEESSS--CC-CCCBCTTTCCBCC
T ss_pred HHHHHHHhCcEEEEEECCC--CC-CCCeeeecCCccc
Confidence 3678899999999887432 11 2233666676653
Done!