RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14680
(78 letters)
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 50.5 bits (121), Expect = 5e-11
Identities = 13/39 (33%), Positives = 29/39 (74%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
I++L+ G+IIGK GE++ ++++++G++I +S+ N
Sbjct: 6 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC 44
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 49.5 bits (118), Expect = 2e-10
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 12 GVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
G I + +P +A G +IG+ GE I +IQ D G +I+ +
Sbjct: 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 43
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2,
nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 49.4 bits (118), Expect = 2e-10
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYP 57
+++ VP GAI+GKGG+T+ + Q+ TG++I++SK +F P
Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP 46
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 79
Score = 47.5 bits (113), Expect = 1e-09
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 13 VCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
V + VP G IIG+GGE I++IQ+++G KI+++ +
Sbjct: 7 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG 48
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 45.9 bits (109), Expect = 5e-09
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
+ +P +IGK GE + ++ T +KI++ + +D
Sbjct: 12 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD 50
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 45.6 bits (108), Expect = 8e-09
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 15 QIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVITL 64
++ + V IIG+ G I QI+ + I+ +D IT+
Sbjct: 11 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITI 60
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 44.9 bits (106), Expect = 1e-08
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 15 QIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYP 57
+ +VP+ G IIGKGGETI I + +G++I++ +
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNA 44
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 81
Score = 44.9 bits (106), Expect = 1e-08
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 10 ADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
G +I++P+ AG +IGKGGETI Q+Q+ G K+ M +
Sbjct: 4 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP 48
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 44.1 bits (104), Expect = 2e-08
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
++ +P+ G IIG+ G I +I++ +G++IK++ +
Sbjct: 4 HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE 42
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 44.4 bits (105), Expect = 2e-08
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
I++ VP +IG+ G I ++ + I +
Sbjct: 12 IEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL 50
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 43.7 bits (103), Expect = 4e-08
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYPVYQVI 62
++ +P AG+IIGKGG+ I QI+ ++G+ IK+ + + +
Sbjct: 6 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIIT 52
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 40.9 bits (96), Expect = 3e-07
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
++I + +IGK G I +I+ +++ ++
Sbjct: 7 VEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE 45
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein,
Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 41.5 bits (97), Expect = 4e-07
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKANDFYP 57
++ VP + G IIG+GGETI I K +G+KI K ++
Sbjct: 17 EQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTL 58
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 40.2 bits (94), Expect = 7e-07
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 9 RADGVCQIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
+ + + + IIG G+ I +I + I+ ++
Sbjct: 5 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA 50
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 39.4 bits (92), Expect = 2e-06
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 15 QIKILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSK 51
+I + V GA+IG GE A+I + TG+ I +
Sbjct: 4 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT 40
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 37.3 bits (87), Expect = 6e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKIK 48
I + +P G +IG + I QIQ+DTG++I
Sbjct: 5 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEIT 37
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein
1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 35.9 bits (83), Expect = 4e-05
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 18 ILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSK 51
+ + +IGK G I ++ + +I + +
Sbjct: 5 VAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ 38
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 34.8 bits (80), Expect = 1e-04
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 15 QIKILVPSYAAGAIIGKGGETIAQI-QKDTGSKIKMSKAN 53
++++ +P+ ++IG G I I ++ G I
Sbjct: 11 EVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG 50
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation
syndrome related protein 1, FXR1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 78
Score = 34.1 bits (78), Expect = 2e-04
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 17 KILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSKAND 54
+ +V G IG G I Q +K G +
Sbjct: 11 EFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDT 48
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 33.6 bits (77), Expect = 2e-04
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 18 ILVPSYAAGAIIGKGGETIAQIQKDTGSKIKMSK 51
I + +IGK + +G I ++
Sbjct: 5 IDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVAN 38
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 33.3 bits (76), Expect = 4e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 9 RADGVCQIKILVPSYAAGAIIGKGGETIAQIQKD-TGSKIKMSKANDFY 56
+A+ + PS+ IIGK G+ +A+I + I+ ++ D
Sbjct: 16 KANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKI 64
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754
{Aeropyrum pernix [TaxId: 56636]}
Length = 104
Score = 33.5 bits (77), Expect = 5e-04
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 26 GAIIGKGGETIAQIQKDTGSKI 47
G IIG+GG I++ T + I
Sbjct: 25 GRIIGEGGRARRTIEEMTDTYI 46
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein
1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 32.8 bits (75), Expect = 6e-04
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 18 ILVPSYAAGAIIGKGGETIAQIQKDTGSKI 47
+ + +IG+ + +++ T KI
Sbjct: 5 VEISPAKVPRVIGRKMSMLKTLEEKTECKI 34
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 31.3 bits (71), Expect = 0.004
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 17 KILVPSYAA------GAIIGKGGETIAQIQKDTGSKIKM 49
K+ VP G I+G G T Q++ +TG KI +
Sbjct: 5 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMV 43
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 30.6 bits (69), Expect = 0.008
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 14 CQIKILVPSYAA------GAIIGKGGETIAQIQKDTGSKI 47
K+++P G +IG G T+ I+K+ +KI
Sbjct: 3 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKI 42
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA,
C-terminal domains {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 67
Score = 25.4 bits (56), Expect = 0.40
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 16 IKILVPSYAAGAIIGKGGETIAQIQKDTGSKI 47
+++VP + IGK G+ + TG +I
Sbjct: 28 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRI 59
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 105
Score = 25.2 bits (55), Expect = 0.66
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 4 KSPFIRADGVCQIKILVPSYAAGAIIGKGGETIAQIQKD 42
+ RA + + V G +IG+GGE I ++++
Sbjct: 53 RVDIERAADNVAVTVHVAK--PGVVIGRGGERIRVLREE 89
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 22.9 bits (49), Expect = 4.0
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 9 RADGVCQIKILVPSYAAGAIIGKGGETIAQIQKD 42
R ++ I G +IGK GE + +++K
Sbjct: 58 RPAKSIRVTIHTAR--PGIVIGKKGEDVEKLRKV 89
>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 118
Score = 22.9 bits (49), Expect = 4.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 25 AGAIIGKGGETIAQIQKDTGSKI 47
+IG+GG I +I + T ++
Sbjct: 62 KAIVIGEGGRKIKEIGQATRKQL 84
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 442
Score = 23.0 bits (48), Expect = 5.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 59 YQVITLFLLSRPGFEPSTSD 78
Y+ LL +PGFE +
Sbjct: 418 YKKNMFALLGKPGFEDEKAA 437
>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 22.1 bits (47), Expect = 8.3
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 25 AGAIIGKGGETIAQIQKDTGSKI 47
+IG G I I + +
Sbjct: 61 KKMVIGNKGAKIKTIGIEARKDM 83
>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio
vulgaris [TaxId: 881]}
Length = 69
Score = 21.6 bits (46), Expect = 9.1
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 4 KSPFI---RADGVCQIKILVPSYAAGAI 28
K P I D +C+I + V S A+
Sbjct: 1 KPPMIDHEWTDQLCEIPLAVASCPTAAV 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 270,881
Number of extensions: 9610
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 32
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)