BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14681
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/254 (60%), Positives = 166/254 (65%), Gaps = 60/254 (23%)
Query: 45 LVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNI 104
+V FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNI
Sbjct: 95 VVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNI 154
Query: 105 AKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRTIH- 163
AKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR I+
Sbjct: 155 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE 214
Query: 164 --------------GLIYNALKL------------------------------------F 173
G I N L F
Sbjct: 215 TEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQF 274
Query: 174 MEMNQKLFDEFAFPL---------PSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKC 224
+E + L + L P +VMFLNELEEILDVIEP+EF K+M PLF Q+AKC
Sbjct: 275 LEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKC 334
Query: 225 VSSSHFQTTLHRIY 238
VSS HFQ +Y
Sbjct: 335 VSSPHFQVAERALY 348
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 125/203 (61%), Gaps = 41/203 (20%)
Query: 230 FQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKD 289
+TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK+
Sbjct: 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241
Query: 290 EHKFFLLKVLLRIFAVN------------------------------LFRTLPPSSNPNG 319
EHK FLLKVLL + V L + P + +P
Sbjct: 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE 301
Query: 320 AEF-----------DPEEDEPTLEAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNLITD 368
F +P E +E + L VAERALYYWNNEY M+LI+D
Sbjct: 302 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 361
Query: 369 NATVIVPIMFPALYRNSKTHWNK 391
NA I+PIMFP+LYRNSKTHWNK
Sbjct: 362 NAAKILPIMFPSLYRNSKTHWNK 384
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 49/51 (96%)
Query: 299 LLRIFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRYV 349
++ +FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLR++
Sbjct: 95 VVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFL 145
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 24/24 (100%)
Query: 160 RTIHGLIYNALKLFMEMNQKLFDE 183
+TIHGLIYNALKLFMEMNQKLFD+
Sbjct: 384 KTIHGLIYNALKLFMEMNQKLFDD 407
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 168/261 (64%), Gaps = 60/261 (22%)
Query: 38 TEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 97
TE +V FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES
Sbjct: 100 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 159
Query: 98 PDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 157
PDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI
Sbjct: 160 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219
Query: 158 FYRTIH---------------GLIYNALKL------------------------------ 172
FYR I+ G I N L
Sbjct: 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 279
Query: 173 ------FMEMNQKLFDEFAFPL---------PSQVMFLNELEEILDVIEPAEFQKVMVPL 217
F+E + L + L P +VMFLNELEEILDVIEP+EF K+M PL
Sbjct: 280 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 339
Query: 218 FHQIAKCVSSSHFQTTLHRIY 238
F Q+AKCVSS HFQ +Y
Sbjct: 340 FRQLAKCVSSPHFQVAERALY 360
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 121/199 (60%), Gaps = 41/199 (20%)
Query: 230 FQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKD 289
+TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK+
Sbjct: 194 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 253
Query: 290 EHKFFLLKVLLRIFAVN------------------------------LFRTLPPSSNPNG 319
EHK FLLKVLL + V L + P + +P
Sbjct: 254 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE 313
Query: 320 AEF-----------DPEEDEPTLEAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNLITD 368
F +P E +E + L VAERALYYWNNEY M+LI+D
Sbjct: 314 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 373
Query: 369 NATVIVPIMFPALYRNSKT 387
NA I+PIMFP+LYRNSKT
Sbjct: 374 NAAKILPIMFPSLYRNSKT 392
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 49/51 (96%)
Query: 299 LLRIFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRYV 349
++ +FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLR++
Sbjct: 107 VVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFL 157
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 168/261 (64%), Gaps = 60/261 (22%)
Query: 38 TEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 97
TE +V FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES
Sbjct: 59 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 118
Query: 98 PDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 157
PDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI
Sbjct: 119 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 178
Query: 158 FYRTIH---------------GLIYNALKL------------------------------ 172
FYR I+ G I N L
Sbjct: 179 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 238
Query: 173 ------FMEMNQKLFDEFAFPL---------PSQVMFLNELEEILDVIEPAEFQKVMVPL 217
F+E + L + L P +VMFLNELEEILDVIEP+EF K+M PL
Sbjct: 239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 298
Query: 218 FHQIAKCVSSSHFQTTLHRIY 238
F Q+AKCVSS HFQ +Y
Sbjct: 299 FRQLAKCVSSPHFQVAERALY 319
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 125/203 (61%), Gaps = 41/203 (20%)
Query: 230 FQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKD 289
+TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK+
Sbjct: 153 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 212
Query: 290 EHKFFLLKVLLRIFAVN------------------------------LFRTLPPSSNPNG 319
EHK FLLKVLL + V L + P + +P
Sbjct: 213 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE 272
Query: 320 AEF-----------DPEEDEPTLEAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNLITD 368
F +P E +E + L VAERALYYWNNEY M+LI+D
Sbjct: 273 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 332
Query: 369 NATVIVPIMFPALYRNSKTHWNK 391
NA I+PIMFP+LYRNSKTHWNK
Sbjct: 333 NAAKILPIMFPSLYRNSKTHWNK 355
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 60/82 (73%), Gaps = 8/82 (9%)
Query: 268 GIAELLEILGSIINGFALPLKDEHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEFDPEED 327
++E++E + N P+ E ++ +FAVN+FRTLPPSSNP GAEFDPEED
Sbjct: 43 ALSEMVEYITHNRNVITEPIYPE--------VVHMFAVNMFRTLPPSSNPTGAEFDPEED 94
Query: 328 EPTLEAAWPHLQLVYEFFLRYV 349
EPTLEAAWPHLQLVYEFFLR++
Sbjct: 95 EPTLEAAWPHLQLVYEFFLRFL 116
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 24/24 (100%)
Query: 160 RTIHGLIYNALKLFMEMNQKLFDE 183
+TIHGLIYNALKLFMEMNQKLFD+
Sbjct: 355 KTIHGLIYNALKLFMEMNQKLFDD 378
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 168/261 (64%), Gaps = 60/261 (22%)
Query: 38 TEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 97
TE +V FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES
Sbjct: 55 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 114
Query: 98 PDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 157
PDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI
Sbjct: 115 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 174
Query: 158 FYRTIH---------------GLIYNALKL------------------------------ 172
FYR I+ G I N L
Sbjct: 175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 234
Query: 173 ------FMEMNQKLFDEFAFPL---------PSQVMFLNELEEILDVIEPAEFQKVMVPL 217
F+E + L + L P +VMFLNELEEILDVIEP+EF K+M PL
Sbjct: 235 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 294
Query: 218 FHQIAKCVSSSHFQTTLHRIY 238
F Q+AKCVSS HFQ +Y
Sbjct: 295 FRQLAKCVSSPHFQVAERALY 315
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 125/203 (61%), Gaps = 41/203 (20%)
Query: 230 FQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKD 289
+TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK+
Sbjct: 149 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208
Query: 290 EHKFFLLKVLLRIFAVN------------------------------LFRTLPPSSNPNG 319
EHK FLLKVLL + V L + P + +P
Sbjct: 209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE 268
Query: 320 AEF-----------DPEEDEPTLEAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNLITD 368
F +P E +E + L VAERALYYWNNEY M+LI+D
Sbjct: 269 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 328
Query: 369 NATVIVPIMFPALYRNSKTHWNK 391
NA I+PIMFP+LYRNSKTHWNK
Sbjct: 329 NAAKILPIMFPSLYRNSKTHWNK 351
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 60/82 (73%), Gaps = 8/82 (9%)
Query: 268 GIAELLEILGSIINGFALPLKDEHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEFDPEED 327
++E++E + N P+ E ++ +FAVN+FRTLPPSSNP GAEFDPEED
Sbjct: 39 ALSEMVEYITHNRNVITEPIYPE--------VVHMFAVNMFRTLPPSSNPTGAEFDPEED 90
Query: 328 EPTLEAAWPHLQLVYEFFLRYV 349
EPTLEAAWPHLQLVYEFFLR++
Sbjct: 91 EPTLEAAWPHLQLVYEFFLRFL 112
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 24/24 (100%)
Query: 160 RTIHGLIYNALKLFMEMNQKLFDE 183
+TIHGLIYNALKLFMEMNQKLFD+
Sbjct: 351 KTIHGLIYNALKLFMEMNQKLFDD 374
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/254 (54%), Positives = 158/254 (62%), Gaps = 60/254 (23%)
Query: 45 LVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNI 104
+V FAVN FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNI
Sbjct: 58 VVHXFAVNXFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNI 117
Query: 105 AKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRTIHG 164
AKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR I+
Sbjct: 118 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE 177
Query: 165 L-IYNALKLFMEMNQKLFDEFAFPLPSQ-----------------------------VMF 194
+N + +E+ + + FA PL + V F
Sbjct: 178 TEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQF 237
Query: 195 LNE---------------------------LEEILDVIEPAE---FQKVMVPLFHQIAKC 224
L + L E+ ++++ E F K+ PLF Q+AKC
Sbjct: 238 LEKDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKC 297
Query: 225 VSSSHFQTTLHRIY 238
VSS HFQ +Y
Sbjct: 298 VSSPHFQVAERALY 311
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 123/203 (60%), Gaps = 41/203 (20%)
Query: 230 FQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKD 289
+TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK+
Sbjct: 145 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 204
Query: 290 EHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEF---DPEEDEPTLEAA---WPHLQLVYE 343
EHK FLLKVLL + V P +F D EP + A WP E
Sbjct: 205 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVXALLKYWPKTHSPKE 264
Query: 344 F-----------------FLRY------------------VAERALYYWNNEYFMNLITD 368
F++ VAERALYYWNNEY +LI+D
Sbjct: 265 VXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCVSSPHFQVAERALYYWNNEYIXSLISD 324
Query: 369 NATVIVPIMFPALYRNSKTHWNK 391
NA I+PI FP+LYRNSKTHWNK
Sbjct: 325 NAAKILPIXFPSLYRNSKTHWNK 347
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 47/51 (92%)
Query: 299 LLRIFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRYV 349
++ FAVN FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLR++
Sbjct: 58 VVHXFAVNXFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFL 108
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 160 RTIHGLIYNALKLFMEMNQKLFDE 183
+TIHGLIYNALKLF E NQKLFD+
Sbjct: 347 KTIHGLIYNALKLFXEXNQKLFDD 370
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 237 IYGKFLGLRAYIRKQI---NNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKF 293
+ GK LG + KQ +++ R IY E+ +G +L + + S IN L EH
Sbjct: 226 VSGKVLGTKGNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHGV 285
Query: 294 FLLKVLLRIFAVNLFRT 310
+++ + A N T
Sbjct: 286 EKKEIMAAVVAGNTTMT 302
>pdb|4GWP|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 687
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 32 DPDKRETEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFF 91
DPD + + +A NL TL SSNPN + P DEP E+A +
Sbjct: 5 DPDSNHLSSET-GIKLALDPNLI-TLALSSNPNSSLHSPTSDEPVPESAGK-----ADTS 57
Query: 92 LRFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKF 143
+R LE + + N KK D+ L+ L + +D L + H IYG
Sbjct: 58 IR-LEGDELE-NKTKKDNDKN--LKFL--------KNKDSLVSNPHEIYGSM 97
>pdb|4F9U|A Chain A, Structure Of Glycosylated Glutaminyl Cyclase From
Drosophila Melanogaster
pdb|4F9U|B Chain B, Structure Of Glycosylated Glutaminyl Cyclase From
Drosophila Melanogaster
pdb|4FWU|A Chain A, Crystal Structure Of Glutaminyl Cyclase From Drosophila
Melanogaster In Space Group I4
Length = 312
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 101 QPNIAKKYIDQKFVLQLLDLFDSEDPR------ERDFLKTTLHRIYGKFLGLRAYIRKQI 154
Q +A + ID+ VL LLDL + +P+ D L ++L +I K L +
Sbjct: 172 QAQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIE-KSLRTAGQLEGNN 230
Query: 155 NNIFYRTIHGLIYNALKLFMEMNQKLFDEFAFPLP 189
N R GL+ + + F++ N + A P P
Sbjct: 231 NMFLSRVSGGLVDDDHRPFLDENVPVLHLVATPFP 265
>pdb|4F9V|A Chain A, Structure Of C113aC136A MUTANT VARIANT OF GLYCOSYLATED
GLUTAMINYL Cyclase From Drosophila Melanogaster
pdb|4F9V|B Chain B, Structure Of C113aC136A MUTANT VARIANT OF GLYCOSYLATED
GLUTAMINYL Cyclase From Drosophila Melanogaster
Length = 312
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 101 QPNIAKKYIDQKFVLQLLDLFDSEDPR------ERDFLKTTLHRIYGKFLGLRAYIRKQI 154
Q +A + ID+ VL LLDL + +P+ D L ++L +I K L +
Sbjct: 172 QAQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIE-KSLRTAGQLEGNN 230
Query: 155 NNIFYRTIHGLIYNALKLFMEMNQKLFDEFAFPLP 189
N R GL+ + + F++ N + A P P
Sbjct: 231 NMFLSRVSGGLVDDDHRPFLDENVPVLHLVATPFP 265
>pdb|2HXO|A Chain A, Structure Of The Transcriptional Regulator Sco7222, A Tetr
From Streptomyces Coelicolor
pdb|2HXO|B Chain B, Structure Of The Transcriptional Regulator Sco7222, A Tetr
From Streptomyces Coelicolor
Length = 237
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 272 LLEILGSIINGFALPLKDEHKFFLLKVLLR--IFAVNLFRTLPPSSNPNGAEFDPEEDEP 329
+ E LG + +P + H F L + A S+ P GA+ D +E
Sbjct: 128 IFESLGRQVQAXGVP--EAHWFTASSALXHYILGAAGQNAANSASAGPVGADVDRDEFLD 185
Query: 330 TLEAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNLITDNATVIVPIMFPA 380
T+ AW L F R VA++ + + E F+ IT T I + P
Sbjct: 186 TVSTAWEGLDPDAYPFTRAVADQVRGHDDREQFLAGITLVLTGITALHRPG 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,829,569
Number of Sequences: 62578
Number of extensions: 496889
Number of successful extensions: 1593
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 37
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)