Query psy14681
Match_columns 394
No_of_seqs 195 out of 350
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 17:59:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085|consensus 100.0 9E-103 2E-107 780.9 18.9 282 2-393 48-401 (457)
2 PF01603 B56: Protein phosphat 100.0 3.8E-81 8.2E-86 634.7 4.6 280 2-394 5-358 (409)
3 KOG2085|consensus 100.0 3.2E-30 6.9E-35 259.5 5.6 135 111-263 194-392 (457)
4 PF01603 B56: Protein phosphat 99.8 2.1E-19 4.5E-24 183.4 9.5 153 84-263 132-348 (409)
5 PLN00122 serine/threonine prot 99.6 1.5E-17 3.2E-22 152.4 -1.0 66 307-394 48-113 (170)
6 PLN00122 serine/threonine prot 95.0 0.072 1.6E-06 49.6 7.0 66 103-185 70-135 (170)
7 PF14630 ORC5_C: Origin recogn 41.9 1.2E+02 0.0027 29.5 8.1 129 196-352 9-150 (271)
8 PF05918 API5: Apoptosis inhib 36.5 2.7E+02 0.0058 30.9 10.2 93 117-215 101-200 (556)
9 KOG0213|consensus 25.6 4.4E+02 0.0095 30.8 9.6 58 105-170 793-865 (1172)
10 PF04078 Rcd1: Cell differenti 25.2 1.6E+02 0.0035 29.6 5.7 101 193-306 42-147 (262)
11 PF04499 SAPS: SIT4 phosphatas 24.8 5E+02 0.011 28.0 9.7 53 77-129 23-79 (475)
12 PF12030 DUF3517: Domain of un 23.7 8.3E+02 0.018 25.3 13.3 38 87-127 2-41 (337)
13 PF08689 Med5: Mediator comple 23.4 1.1E+03 0.024 28.0 12.8 114 200-316 631-754 (989)
No 1
>KOG2085|consensus
Probab=100.00 E-value=9.2e-103 Score=780.88 Aligned_cols=282 Identities=63% Similarity=1.029 Sum_probs=273.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCccccCCCCCCcC------ccc----------------chHhHHHHHHHHHhhhcCCCCC
Q psy14681 2 HGKIALEERLEASDQFSRRNCLLFRGIPEADPD------KRE----------------TEEDCQALVMAFAVNLFRTLPP 59 (394)
Q Consensus 2 ~~~~~~~e~~~Lf~~Kl~~C~~ifDF~~~~~~d------Kr~----------------te~~~~~ii~Mis~NiFR~lPp 59 (394)
++|||++|+++||++|++|||++|||+ ||.+| ||+ |+++|+++++|+++||||++||
T Consensus 48 ~~dv~~se~~~Lf~~Kl~~Cc~~FDF~-Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~nifR~lpp 126 (457)
T KOG2085|consen 48 LKDVPSSEQKELFIKKLEQCCVLFDFN-DPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVNIFRTLPP 126 (457)
T ss_pred cCcCChhHhHHHHHHHHHhhheeeecc-ChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCc
Confidence 689999999999999999999999996 89888 675 8999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCcchHHHHHHHHHHhhCCCCCchhhhhcCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy14681 60 SSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRI 139 (394)
Q Consensus 60 ~~~~~~~~fdpeedEp~le~sWPHLqlVYe~llrfv~s~~~~~~~~k~~id~~fv~~Ll~lf~S~DpRER~~~k~~~~r~ 139 (394)
+.+++| +|||||||++|++|||||+|||+|+||++||+||+++||+||||+||++||++|||||||||+++|++||||
T Consensus 127 ~~n~~~--~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrI 204 (457)
T KOG2085|consen 127 SVNPTG--FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRI 204 (457)
T ss_pred ccCCCc--CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999986 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhhccccccCChhhhhhhHHHHHHHhhcChhHHhhhhhHHHH
Q psy14681 140 YGKFLGLRAYIRKQINNIFYRTIHGLIYNALKLFMEMNQKLFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVPLFH 219 (394)
Q Consensus 140 ~~kf~~~r~~iR~~i~~~f~~~i~~si~n~~~~pLe~~~~l~~~~~wP~~kev~fl~eleeil~~~~~~~f~~~~~pLf~ 219 (394)
||||+++
T Consensus 205 ygKfl~~------------------------------------------------------------------------- 211 (457)
T KOG2085|consen 205 YGKFLVH------------------------------------------------------------------------- 211 (457)
T ss_pred HHHHhhh-------------------------------------------------------------------------
Confidence 9999998
Q ss_pred HHhhhhcccchhhhHHHhhhhcchhHHHHHHHhhhhhhhhcccccccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q psy14681 220 QIAKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVL 299 (394)
Q Consensus 220 ~i~~C~~s~~fqv~~~~~~~k~~~~r~~irk~~~~~~~~fiye~~~~~gi~ELLeil~sIi~gf~~plk~eh~~~l~~~l 299 (394)
|+||||+|||+||+|||||++||||+|||||+||||||||.|+|+|||.||.+||
T Consensus 212 -------------------------r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvL 266 (457)
T KOG2085|consen 212 -------------------------RPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVL 266 (457)
T ss_pred -------------------------HHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhh
Confidence 7888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh------------------------------hhhcCCCCCCCCCCCCCCCCCc---------------ccc---
Q psy14681 300 LRIFAVN------------------------------LFRTLPPSSNPNGAEFDPEEDE---------------PTL--- 331 (394)
Q Consensus 300 ipmh~~n------------------------------l~R~wP~~~~~k~~~f~~E~eE---------------pl~--- 331 (394)
+|||+++ ++|+||.++++|+|+|++|+|| |++
T Consensus 267 ipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qi 346 (457)
T KOG2085|consen 267 IPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQI 346 (457)
T ss_pred hccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHH
Confidence 9999997 9999999999999999999999 454
Q ss_pred --ccCChhhHHHHHHHHHHHHHHhhhhccchHHHHHHhhcccccchhhhHHHHhhhhcccCccc
Q psy14681 332 --EAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKFL 393 (394)
Q Consensus 332 --~~swpHlQlVy~~lLr~VaerAl~~~~n~~i~~Li~~~~~~i~pi~~~~l~~~~~~HWn~~i 393 (394)
|++|+|+| |||||+++|||+++++|+++|+.+|+|||||||||+|++|||++|
T Consensus 347 a~c~sS~HFQ---------VAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i 401 (457)
T KOG2085|consen 347 ARCVSSPHFQ---------VAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAI 401 (457)
T ss_pred HHHcCChhHH---------HHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999987
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=3.8e-81 Score=634.72 Aligned_cols=280 Identities=59% Similarity=0.994 Sum_probs=236.5
Q ss_pred CCCCChHHHHHHHHHHHHhCCccccCCCCCCcC------ccc------------------chHhHHHHHHHHHhhhcCCC
Q psy14681 2 HGKIALEERLEASDQFSRRNCLLFRGIPEADPD------KRE------------------TEEDCQALVMAFAVNLFRTL 57 (394)
Q Consensus 2 ~~~~~~~e~~~Lf~~Kl~~C~~ifDF~~~~~~d------Kr~------------------te~~~~~ii~Mis~NiFR~l 57 (394)
++|++++|++++|++||++||++|||+ |+.+| ||+ +|++++++++|+++||||++
T Consensus 5 l~dv~~~e~~~lf~~Kl~~C~~ifDF~-d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~l 83 (409)
T PF01603_consen 5 LPDVPPPERQELFLKKLQQCCVIFDFS-DPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPL 83 (409)
T ss_dssp --SS-SSSCSCHTTHHHHHHHHHSTTS-SSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S--
T ss_pred CCCCCcHHHHHHHHHHHHHhCCEeeCC-CCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCC
Confidence 589999999999999999999999995 89888 443 89999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCcchHHHHHHHHHHhhCCCCCchhhhhcCCHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy14681 58 PPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLH 137 (394)
Q Consensus 58 Pp~~~~~~~~fdpeedEp~le~sWPHLqlVYe~llrfv~s~~~~~~~~k~~id~~fv~~Ll~lf~S~DpRER~~~k~~~~ 137 (394)
||.+++ .+|+|||++++|+||||||+||++|++|++|+++++ +|+|||++||.+|+++|+|+|||||+++|+++|
T Consensus 84 P~~~~~---~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~--~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~ 158 (409)
T PF01603_consen 84 PPIPNP---SFDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDP--AKKYIDQKFIKKLLELFDSPDPRERDYLKTILH 158 (409)
T ss_dssp ---SS-----S-GGG------TTHHHHHHHHHHHHHHHTSTT--C--CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHH
T ss_pred CCcccc---cCCccccccccccccHhHHHHHHHHHHHHHCccccH--HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999887 388999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhhccccccCChhhhhhhHHHHHHHhhcChhHHhhhhhHH
Q psy14681 138 RIYGKFLGLRAYIRKQINNIFYRTIHGLIYNALKLFMEMNQKLFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVPL 217 (394)
Q Consensus 138 r~~~kf~~~r~~iR~~i~~~f~~~i~~si~n~~~~pLe~~~~l~~~~~wP~~kev~fl~eleeil~~~~~~~f~~~~~pL 217 (394)
|+||||+++
T Consensus 159 ~iy~k~~~~----------------------------------------------------------------------- 167 (409)
T PF01603_consen 159 RIYGKFPNL----------------------------------------------------------------------- 167 (409)
T ss_dssp HHHHH-TTT-----------------------------------------------------------------------
T ss_pred HHHHHhhhh-----------------------------------------------------------------------
Confidence 999999998
Q ss_pred HHHHhhhhcccchhhhHHHhhhhcchhHHHHHHHhhhhhhhhcccccccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q psy14681 218 FHQIAKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLK 297 (394)
Q Consensus 218 f~~i~~C~~s~~fqv~~~~~~~k~~~~r~~irk~~~~~~~~fiye~~~~~gi~ELLeil~sIi~gf~~plk~eh~~~l~~ 297 (394)
|++||++++++|++|+||++.|+||+||||++|||++||+.|+|+||+.|+.+
T Consensus 168 ---------------------------r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~ 220 (409)
T PF01603_consen 168 ---------------------------RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRK 220 (409)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 77777777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh------------------------------hhhcCCCCCCCCCCCCCCCCCcc---------------cc-
Q psy14681 298 VLLRIFAVN------------------------------LFRTLPPSSNPNGAEFDPEEDEP---------------TL- 331 (394)
Q Consensus 298 ~lipmh~~n------------------------------l~R~wP~~~~~k~~~f~~E~eEp---------------l~- 331 (394)
+++|||+++ ++|+||.++++|+++|++|.++. ++
T Consensus 221 vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~ 300 (409)
T PF01603_consen 221 VLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFK 300 (409)
T ss_dssp TTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999998 99999999999999999999982 22
Q ss_pred ----ccCChhhHHHHHHHHHHHHHHhhhhccchHHHHHHhhcccccchhhhHHHHhhhhcccCcccC
Q psy14681 332 ----EAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKFLK 394 (394)
Q Consensus 332 ----~~swpHlQlVy~~lLr~VaerAl~~~~n~~i~~Li~~~~~~i~pi~~~~l~~~~~~HWn~~i~ 394 (394)
|++|+|+| |||||+++|+|+++++++++|+++|+|+++|+||+++++|||++|+
T Consensus 301 ~la~ci~S~h~q---------VAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 301 RLAKCISSPHFQ---------VAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp HHHHHHTSSSHH---------HHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred HHHHHhCCCCHH---------HHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999 9999999999999999999999999999999999999999999874
No 3
>KOG2085|consensus
Probab=99.96 E-value=3.2e-30 Score=259.47 Aligned_cols=135 Identities=47% Similarity=0.696 Sum_probs=124.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh---------------hhHHHhHHHHHHH
Q psy14681 111 QKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRTI---------------HGLIYNALKLFME 175 (394)
Q Consensus 111 ~~fv~~Ll~lf~S~DpRER~~~k~~~~r~~~kf~~~r~~iR~~i~~~f~~~i---------------~~si~n~~~~pLe 175 (394)
.+|+..+|- |+|||++.||.| |||+|||+||+|| +||||||||+||+
T Consensus 194 Re~LKT~Lh---------rIygKfl~~r~f---------irk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlK 255 (457)
T KOG2085|consen 194 REFLKTILH---------RIYGKFLVHRPF---------IRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLK 255 (457)
T ss_pred HHHHHHHHH---------HHHHHHhhhHHH---------HHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcch
Confidence 468888888 999999999999 9999999999996 7999999999999
Q ss_pred hhhhhcccc------------------------------------------ccCC---hhhhhhhHHHHHHHhhcChhHH
Q psy14681 176 MNQKLFDEF------------------------------------------AFPL---PSQVMFLNELEEILDVIEPAEF 210 (394)
Q Consensus 176 ~~~~l~~~~------------------------------------------~wP~---~kev~fl~eleeil~~~~~~~f 210 (394)
++||+|... +||. +||||||||||||||+++|+||
T Consensus 256 EEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eF 335 (457)
T KOG2085|consen 256 EEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEF 335 (457)
T ss_pred hHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHH
Confidence 999887532 1995 8999999999999999999999
Q ss_pred hhhhhHHHHHHhhhhcccchhhhHHHhhh----hcchhHHHHHHHhhhhhhhhcccc
Q psy14681 211 QKVMVPLFHQIAKCVSSSHFQTTLHRIYG----KFLGLRAYIRKQINNIFYRFIYET 263 (394)
Q Consensus 211 ~~~~~pLf~~i~~C~~s~~fqv~~~~~~~----k~~~~r~~irk~~~~~~~~fiye~ 263 (394)
+++|+|||+||++|.+|+||||||+++|. ++..+.+--++.|.+|+|+-+|+.
T Consensus 336 qk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~ 392 (457)
T KOG2085|consen 336 QKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRN 392 (457)
T ss_pred HHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHH
Confidence 99999999999999999999999999994 778888888899999999999986
No 4
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=99.79 E-value=2.1e-19 Score=183.45 Aligned_cols=153 Identities=41% Similarity=0.710 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHhhCCCCCchhhhhcCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh-
Q psy14681 84 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRTI- 162 (394)
Q Consensus 84 LqlVYe~llrfv~s~~~~~~~~k~~id~~fv~~Ll~lf~S~DpRER~~~k~~~~r~~~kf~~~r~~iR~~i~~~f~~~i- 162 (394)
-+.|..+ +....||| ++ .++++..++- |.|+|.+-+|.+ ||++|+++|++||
T Consensus 132 ~~fi~~L-l~l~~S~D--~r------ER~~lk~~l~---------~iy~k~~~~r~~---------Ir~~i~~~~~~fi~ 184 (409)
T PF01603_consen 132 QKFIKKL-LELFDSPD--PR------ERDYLKTILH---------RIYGKFPNLRSF---------IRKSINNIFYRFIY 184 (409)
T ss_dssp HHHHHHH-HHTTTSST--HH------HHHHHHHHHH---------HHHHH-TTTHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHcCCCC--HH------HHHHHHHHHH---------HHHHHhhhhHHH---------HHHHHHHHHHHHhc
Confidence 3566664 44566766 33 2457888888 999999999999 9999999999986
Q ss_pred --------------hhHHHhHHHHHHHhhhhhccc-c-----------------------------------------cc
Q psy14681 163 --------------HGLIYNALKLFMEMNQKLFDE-F-----------------------------------------AF 186 (394)
Q Consensus 163 --------------~~si~n~~~~pLe~~~~l~~~-~-----------------------------------------~w 186 (394)
+|||+|||++||+++|+.+.. + .|
T Consensus 185 e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W 264 (409)
T PF01603_consen 185 ETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW 264 (409)
T ss_dssp TTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS
T ss_pred CcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC
Confidence 799999999999888755542 1 19
Q ss_pred CC---hhhhhhhHHHHHHHhhcChhHHhhhhhHHHHHHhhhhcccchhhhHHHhh----hhcchhHHHHHHHhhhhhhhh
Q psy14681 187 PL---PSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQTTLHRIY----GKFLGLRAYIRKQINNIFYRF 259 (394)
Q Consensus 187 P~---~kev~fl~eleeil~~~~~~~f~~~~~pLf~~i~~C~~s~~fqv~~~~~~----~k~~~~r~~irk~~~~~~~~f 259 (394)
|. +|||+||+|+++|++.+++.+|++++.|+|+++++|+.|+||||||++++ .+++++-+..++.+.+++++.
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~ 344 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPA 344 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHH
Confidence 97 89999999999999999999999999999999999999999999999998 477887777788899999999
Q ss_pred cccc
Q psy14681 260 IYET 263 (394)
Q Consensus 260 iye~ 263 (394)
+|++
T Consensus 345 L~~~ 348 (409)
T PF01603_consen 345 LYRN 348 (409)
T ss_dssp HSST
T ss_pred HHHH
Confidence 9984
No 5
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=99.64 E-value=1.5e-17 Score=152.45 Aligned_cols=66 Identities=41% Similarity=0.692 Sum_probs=62.0
Q ss_pred hhhcCCCCCCCCCCCCCCCCCccccccCChhhHHHHHHHHHHHHHHhhhhccchHHHHHHhhcccccchhhhHHHHhhhh
Q psy14681 307 LFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSK 386 (394)
Q Consensus 307 l~R~wP~~~~~k~~~f~~E~eEpl~~~swpHlQlVy~~lLr~VaerAl~~~~n~~i~~Li~~~~~~i~pi~~~~l~~~~~ 386 (394)
|.++||.+++.|+.+|+.++ ||||||++|||++|++||.+|+++|+|||||+|||+++
T Consensus 48 l~~~~~v~~s~k~~lfl~kl----------------------VAERAL~lWnNe~i~~LI~~N~~~IlPIifpaL~~ns~ 105 (170)
T PLN00122 48 LPSFRDVPNSEKQNLFVRKL----------------------VAERALFLWNNDHIVNLIAQNRQVILPIIFPALEKNTR 105 (170)
T ss_pred ccCCCCCCchHHHHHHHHHH----------------------HHHHHHHHHccHHHHHHHHHhhhhhHHHhHHHHHHHHH
Confidence 78999999999999986554 99999999999999999999999999999999999999
Q ss_pred cccCcccC
Q psy14681 387 THWNKFLK 394 (394)
Q Consensus 387 ~HWn~~i~ 394 (394)
+|||++|+
T Consensus 106 ~HWN~~V~ 113 (170)
T PLN00122 106 GHWNQAVH 113 (170)
T ss_pred HHhhHHHH
Confidence 99999984
No 6
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=95.04 E-value=0.072 Score=49.56 Aligned_cols=66 Identities=24% Similarity=0.428 Sum_probs=48.8
Q ss_pred hhhhhcCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhhcc
Q psy14681 103 NIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRTIHGLIYNALKLFMEMNQKLFD 182 (394)
Q Consensus 103 ~~~k~~id~~fv~~Ll~lf~S~DpRER~~~k~~~~r~~~kf~~~r~~iR~~i~~~f~~~i~~si~n~~~~pLe~~~~l~~ 182 (394)
-.|-.+++.++|.+|+. |-++-++ .+ ||. -+-+...++|.+.|.+..+|+..+++|++..+|+
T Consensus 70 ERAL~lWnNe~i~~LI~-----~N~~~Il--PI---ifp-------aL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ 132 (170)
T PLN00122 70 ERALFLWNNDHIVNLIA-----QNRQVIL--PI---IFP-------ALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFE 132 (170)
T ss_pred HHHHHHHccHHHHHHHH-----HhhhhhH--HH---hHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45788999999999998 3333211 21 221 1235567899999999999999999999998888
Q ss_pred ccc
Q psy14681 183 EFA 185 (394)
Q Consensus 183 ~~~ 185 (394)
+..
T Consensus 133 ec~ 135 (170)
T PLN00122 133 ECL 135 (170)
T ss_pred HHH
Confidence 764
No 7
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=41.87 E-value=1.2e+02 Score=29.51 Aligned_cols=129 Identities=20% Similarity=0.296 Sum_probs=73.8
Q ss_pred HHHHHHHhhcChhHHhhhhhHHHHHHhhhhcccchhhhHHHhhhhcchhHHHHHHHhhhhhhhhcccccccccHHHHHHH
Q psy14681 196 NELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEI 275 (394)
Q Consensus 196 ~eleeil~~~~~~~f~~~~~pLf~~i~~C~~s~~fqv~~~~~~~k~~~~r~~irk~~~~~~~~fiye~~~~~gi~ELLei 275 (394)
+|+.+||....+.++. .--.+...++|.+|++ .+.+.|+++. .+.+.||..+
T Consensus 9 ~e~~~IL~~~~~~~~~----------------~~~~~~~~~ly~~f~~-------~i~~~~~~~~-----~rdl~eL~~i 60 (271)
T PF14630_consen 9 DELLEILSLDQPSELP----------------DLPDDIDRELYNQFVN-------LILDSFYSYT-----GRDLNELRHI 60 (271)
T ss_pred HHHHHHHhhCCCcccc----------------cccchHHHHHHHHHHH-------HHHHHHhhhc-----CCCHHHHHHH
Confidence 5677888888777665 1234566777778777 2334444333 3568888888
Q ss_pred HHHhhccCCCCchHHHH-----HHHHHHHHHHHHHhhhhcCCCCCCCCCCCCC------CCCCccccccCChhhHHHHHH
Q psy14681 276 LGSIINGFALPLKDEHK-----FFLLKVLLRIFAVNLFRTLPPSSNPNGAEFD------PEEDEPTLEAAWPHLQLVYEF 344 (394)
Q Consensus 276 l~sIi~gf~~plk~eh~-----~~l~~~lipmh~~nl~R~wP~~~~~k~~~f~------~E~eEpl~~~swpHlQlVy~~ 344 (394)
....-..|..|+.+... .-|.+.+-|++..-+=+..+......+..-. .......-.....+|-..-.+
T Consensus 61 ~~~lwp~y~~Pi~~g~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~sK~ 140 (271)
T PF14630_consen 61 AAKLWPKYVEPILEGEIDPSDFSKLYRAIRPLFRSALESLYNRSISSSQWESAQSQENSPSSSSQSNSSQSFELPYYSKY 140 (271)
T ss_pred HHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHHHccCccccccccccccccccccccccccccccccCcHHHHH
Confidence 87777777777765442 4566677777766544444443321111000 001112224445666656667
Q ss_pred HH--HHHHHH
Q psy14681 345 FL--RYVAER 352 (394)
Q Consensus 345 lL--r~Vaer 352 (394)
|| .|+||.
T Consensus 141 LLIAAYLAS~ 150 (271)
T PF14630_consen 141 LLIAAYLASY 150 (271)
T ss_pred HHHHHHHHhc
Confidence 76 688873
No 8
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=36.55 E-value=2.7e+02 Score=30.87 Aligned_cols=93 Identities=23% Similarity=0.382 Sum_probs=45.9
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh---hh-HHHhHHHH-HH-HhhhhhccccccCC-h
Q psy14681 117 LLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRTI---HG-LIYNALKL-FM-EMNQKLFDEFAFPL-P 189 (394)
Q Consensus 117 Ll~lf~S~DpRER~~~k~~~~r~~~kf~~~r~~iR~~i~~~f~~~i---~~-si~n~~~~-pL-e~~~~l~~~~~wP~-~ 189 (394)
|..++.|+|+.|+..++..+.-++.- --+-.++.+|.+.. .| ..+.--++ || ++-..+-.++.-|- .
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E 174 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQ------DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE 174 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence 55578899999999999999877721 11222333333332 11 01000000 11 11111111222232 3
Q ss_pred hhhhhhHHHHHHHhhcChhHHhhhhh
Q psy14681 190 SQVMFLNELEEILDVIEPAEFQKVMV 215 (394)
Q Consensus 190 kev~fl~eleeil~~~~~~~f~~~~~ 215 (394)
-|.-+..|+..+|+-+..+||..+|.
T Consensus 175 ~e~~i~~~ikkvL~DVTaeEF~l~m~ 200 (556)
T PF05918_consen 175 MEEFIVDEIKKVLQDVTAEEFELFMS 200 (556)
T ss_dssp HHHHHHHHHHHHCTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 46678889999999999999998885
No 9
>KOG0213|consensus
Probab=25.62 E-value=4.4e+02 Score=30.82 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=42.2
Q ss_pred hhhcCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh--------hhhhhHHHHHHHHHHHHHhhh-------hhHHHhH
Q psy14681 105 AKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYG--------KFLGLRAYIRKQINNIFYRTI-------HGLIYNA 169 (394)
Q Consensus 105 ~k~~id~~fv~~Ll~lf~S~DpRER~~~k~~~~r~~~--------kf~~~r~~iR~~i~~~f~~~i-------~~si~n~ 169 (394)
+|.|+.| .+...+-++.++.+.-|+.+.+..-++.. |.|++ .+.++|..+ +|||.++
T Consensus 793 ~kpylpq-i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~-------lGvvLyEylgeeypEvLgsILgA 864 (1172)
T KOG0213|consen 793 VKPYLPQ-ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGH-------LGVVLYEYLGEEYPEVLGSILGA 864 (1172)
T ss_pred cccchHH-HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHH-------hhHHHHHhcCcccHHHHHHHHHH
Confidence 4666655 56777888999999999998888877761 23443 677887775 7777766
Q ss_pred H
Q psy14681 170 L 170 (394)
Q Consensus 170 ~ 170 (394)
.
T Consensus 865 i 865 (1172)
T KOG0213|consen 865 I 865 (1172)
T ss_pred H
Confidence 6
No 10
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=25.17 E-value=1.6e+02 Score=29.55 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=52.5
Q ss_pred hhhHHHHHHHhhcChhHHhhhhh-HH--HHHHhhhhcccchhhhHHHhhhhcchhHHHHHHHhhhhhhhhcccccccccH
Q psy14681 193 MFLNELEEILDVIEPAEFQKVMV-PL--FHQIAKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGI 269 (394)
Q Consensus 193 ~fl~eleeil~~~~~~~f~~~~~-pL--f~~i~~C~~s~~fqv~~~~~~~k~~~~r~~irk~~~~~~~~fiye~~~~~gi 269 (394)
..|.|+-.+-..+.|..+..-.. .. --.+-||++| |- .+ +..|++..|--.+|+|+-.+......
T Consensus 42 ~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hp----------et-r~~Fl~a~iplyLyPfL~tt~k~r~~ 109 (262)
T PF04078_consen 42 ALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HP----------ET-RMPFLKAHIPLYLYPFLNTTSKTRPF 109 (262)
T ss_dssp HHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--T----------TT-HHHHHHTTGGGGGHHHHH----SHHH
T ss_pred HHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-Ch----------HH-HHHHHHcCchhhehhhhhcccccccc
Confidence 46777777777777766544110 01 1223355543 21 12 27899999999999999887766665
Q ss_pred HHH-HHHHHHhhccCCCCchHHHHH-HHHHHHHHHHHHh
Q psy14681 270 AEL-LEILGSIINGFALPLKDEHKF-FLLKVLLRIFAVN 306 (394)
Q Consensus 270 ~EL-Leil~sIi~gf~~plk~eh~~-~l~~~lipmh~~n 306 (394)
..| |-.|| +|++-..--.+|... ++...++|+.-.+
T Consensus 110 E~LRLtsLG-VIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 110 EYLRLTSLG-VIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHH-HHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred chhhHhHHH-HHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 555 44444 333332223344444 4556777777443
No 11
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=24.84 E-value=5e+02 Score=28.00 Aligned_cols=53 Identities=13% Similarity=0.329 Sum_probs=36.3
Q ss_pred cccCCcc--hHHHHHHHHHHhhCCC--CCchhhhhcCCHHHHHHHhhcCCCCCHHHH
Q psy14681 77 LEAAWPH--LQLVYEFFLRFLESPD--FQPNIAKKYIDQKFVLQLLDLFDSEDPRER 129 (394)
Q Consensus 77 le~sWPH--LqlVYe~llrfv~s~~--~~~~~~k~~id~~fv~~Ll~lf~S~DpRER 129 (394)
++.-+-| ...+.|+|+|+|.... ....+..=.-++++|.+|++.++.+...++
T Consensus 23 v~~llkHI~~~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~ 79 (475)
T PF04499_consen 23 VDNLLKHIDTPAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDV 79 (475)
T ss_pred HHHHHHhcCCcHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHH
Confidence 3444455 4679999999997554 223344444579999999999985555554
No 12
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=23.65 E-value=8.3e+02 Score=25.28 Aligned_cols=38 Identities=21% Similarity=0.526 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCCCCchhhhhcCCHHHHHHHhhcCC--CCCHH
Q psy14681 87 VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLDLFD--SEDPR 127 (394)
Q Consensus 87 VYe~llrfv~s~~~~~~~~k~~id~~fv~~Ll~lf~--S~DpR 127 (394)
+|++++.|.+ +-+..+..++++.|+.++|..++ ..|++
T Consensus 2 yF~~ll~~a~---LG~~E~a~lL~~gfL~k~L~II~aD~~~s~ 41 (337)
T PF12030_consen 2 YFGLLLSFAE---LGPHETAVLLEHGFLLKCLEIIWADTNDSK 41 (337)
T ss_pred HHHHHHHHHH---cCHHHHHHHhcCcHHHHHHHHHhcccccch
Confidence 5788888887 66777888999999999999864 55653
No 13
>PF08689 Med5: Mediator complex subunit Med5; InterPro: IPR014801 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the Med5 subunit of the Mediator complex in fungi. Deletion of the MED5 gene leads to increased transcription of nuclear genes encoding components of the oxidative phosphorylation machinery, and decreased transcription of mitochondrial genes encoding components of the same machinery []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.39 E-value=1.1e+03 Score=27.96 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=68.6
Q ss_pred HHHhhcChhHHhhhhhHHHHHHhhhhcccchh-hhHHHhhhhcchhHHHHHHHhhhhhhhhccc--ccccccHHHHHHHH
Q psy14681 200 EILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQ-TTLHRIYGKFLGLRAYIRKQINNIFYRFIYE--TEHHNGIAELLEIL 276 (394)
Q Consensus 200 eil~~~~~~~f~~~~~pLf~~i~~C~~s~~fq-v~~~~~~~k~~~~r~~irk~~~~~~~~fiye--~~~~~gi~ELLeil 276 (394)
+++..|+|.+|.+++.-+|+|.--++..--.. ....+-..+|.+ .|+-=.+..+++-...+ ...+.+..+.+.++
T Consensus 631 dLm~s~~pk~~y~LiP~if~Qsi~A~~~G~id~~~L~~GleYflq--pfLlp~lv~~~~wL~~~L~~~~~~~~~~~l~~l 708 (989)
T PF08689_consen 631 DLMKSCSPKQFYKLIPTIFKQSILACEAGKIDFETLKNGLEYFLQ--PFLLPSLVGILKWLEQYLIWLKEDDQSEILKIL 708 (989)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHcCCcCHHHHccHHHHHhH--HHHHHHHHHHHHHHHHHHHHhcCCccchHHHHH
Confidence 77889999999999999999998887433331 133333346665 55555555554433111 22355666666666
Q ss_pred HHhhccC-CCCchHHHHHHHHHHHHHHHHHh------hhhcCCCCCC
Q psy14681 277 GSIINGF-ALPLKDEHKFFLLKVLLRIFAVN------LFRTLPPSSN 316 (394)
Q Consensus 277 ~sIi~gf-~~plk~eh~~~l~~~lipmh~~n------l~R~wP~~~~ 316 (394)
..++... ..|...|- .-+.++++.+.+.+ -+|.|.+++.
T Consensus 709 ~~~l~~~~~~~~s~~~-~~~h~~VL~i~a~~l~~~lr~~~~~~~~~~ 754 (989)
T PF08689_consen 709 QLLLLNSIPSPISGEA-KAMHSTVLNINAVPLLKSLRKFRRQEPSNY 754 (989)
T ss_pred HHHHHhCCCCCCCchH-HHHHHHHHHhccHHHHHHHHHhhcCCcccc
Confidence 6655542 44444444 45556667677666 4556666555
Done!