RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14681
(394 letters)
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 207 bits (528), Expect = 5e-63
Identities = 107/275 (38%), Positives = 139/275 (50%), Gaps = 67/275 (24%)
Query: 19 RRNCL--LFRGIPEADPDKRETEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPT 76
+R L + + +D + TE+ + AVN+FR LPP NP+ DP++DEP
Sbjct: 39 KRQTLKEIVDYVSNSDIVGKLTEDLYDEIFKMIAVNIFRPLPPIPNPS---LDPDDDEPF 95
Query: 77 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTL 136
LE +WPHL LVYE LRF+ESP F P KKYID F+ +LLDLFDS DPRERD LKT L
Sbjct: 96 LEPSWPHLSLVYEILLRFIESPPFDPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFL 153
Query: 137 HRIYGKFLGLRAYIRKQ------------------------------------------- 153
HRIYGKF GLR +IRK
Sbjct: 154 HRIYGKFPGLRPFIRKAINSILYRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDF 213
Query: 154 --------INNIFYRTIHGLIYNALKLFMEMNQKLFDEFA------FPL---PSQVMFLN 196
+ H + + F+E + L +E +P+ +V+FL+
Sbjct: 214 LLKVLLPLHKSKHLSLYHQQLSYCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLD 273
Query: 197 ELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQ 231
ELEEIL+ I P EFQK+MVPLF +A+C+SS HFQ
Sbjct: 274 ELEEILEKIPPEEFQKIMVPLFKILARCISSPHFQ 308
Score = 117 bits (296), Expect = 2e-29
Identities = 57/71 (80%), Positives = 62/71 (87%)
Query: 232 TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEH 291
T LHRIYGKF GLR +IRK IN+I YRFIYETE NG+AELLEILGSIINGFALPLK+EH
Sbjct: 151 TFLHRIYGKFPGLRPFIRKAINSILYRFIYETEKPNGVAELLEILGSIINGFALPLKEEH 210
Query: 292 KFFLLKVLLRI 302
K FLLKVLL +
Sbjct: 211 KDFLLKVLLPL 221
Score = 78.9 bits (195), Expect = 5e-16
Identities = 31/46 (67%), Positives = 41/46 (89%)
Query: 349 VAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKFLK 394
VAERAL WNNEYF+NLI+DN+ +I+PI+FPALYRN+K HWN+ ++
Sbjct: 309 VAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSVR 354
Score = 73.5 bits (181), Expect = 3e-14
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 272 LLEILGSIIN-GFALPLKDEHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEFDPEEDEPT 330
L EI+ + N L ++ L + ++ AVN+FR LPP NP+ DP++DEP
Sbjct: 43 LKEIVDYVSNSDIVGKLTED----LYDEIFKMIAVNIFRPLPPIPNPS---LDPDDDEPF 95
Query: 331 LEAAWPHLQLVYEFFLRYVA 350
LE +WPHL LVYE LR++
Sbjct: 96 LEPSWPHLSLVYEILLRFIE 115
Score = 34.9 bits (81), Expect = 0.064
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 160 RTIHGLIYNALKLFMEMNQKLFDEFA 185
+++ L N LKL ME++ LFDE
Sbjct: 351 QSVRNLALNVLKLLMEIDPDLFDECG 376
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A;
Provisional.
Length = 170
Score = 82.8 bits (205), Expect = 8e-19
Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 343 EFFLR-YVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK 391
F+R VAERAL+ WNN++ +NLI N VI+PI+FPAL +N++ HWN+
Sbjct: 61 NLFVRKLVAERALFLWNNDHIVNLIAQNRQVILPIIFPALEKNTRGHWNQ 110
Score = 32.0 bits (73), Expect = 0.33
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 160 RTIHGLIYNALKLFMEMNQKLFDE 183
+ +HGL N K+F EM+ +LF+E
Sbjct: 110 QAVHGLTLNVRKMFSEMDPELFEE 133
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase.
Length = 614
Score = 33.7 bits (77), Expect = 0.17
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 308 FRTLPPSSNPNGAEFDPE---EDEPTLEAAWPHLQLVYEFFLRYVAERALYY-------- 356
FR L S N +F DE AAW + E++L+YV + A+Y
Sbjct: 217 FRGLYDDSIQNAKKFYTSSGYSDELLWAAAWLYRATGDEYYLKYVVDNAVYMGGTGWAVK 276
Query: 357 ---WNNEY 361
W+N+Y
Sbjct: 277 EFSWDNKY 284
>gnl|CDD|219814 pfam08385, DHC_N1, Dynein heavy chain, N-terminal region 1. Dynein
heavy chains interact with other heavy chains to form
dimers, and with intermediate chain-light chain
complexes to form a basal cargo binding unit. The region
featured in this family includes the sequences
implicated in mediating these interactions. It is
thought to be flexible and not to adopt a rigid
conformation.
Length = 577
Score = 29.9 bits (68), Expect = 2.5
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 194 FLNELEEILDVIEPAEFQKVM---VPLFHQIAKCVSSSHFQTTLHRIY 238
FL +LE + D++ + QK+ P+F+ + S S + L R
Sbjct: 100 FLKDLEPLDDLLSATDLQKIREALPPIFNHLRLKWSISKYYYPLERAL 147
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose
galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl
compounds.
Length = 865
Score = 30.2 bits (68), Expect = 2.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 283 FALPLKD---EHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEFDPEE 326
+ALP +D ++ F K +L+I+ N F + + N GA +DP+E
Sbjct: 647 YALPTRDCLFKNPLFDKKTILKIWNFNKFGGVIGAFNCQGAGWDPKE 693
>gnl|CDD|177855 PLN02205, PLN02205, alpha,alpha-trehalose-phosphate synthase
[UDP-forming].
Length = 854
Score = 28.1 bits (62), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 331 LEAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNL 365
LE A P QL +E RYV+ + YW + +L
Sbjct: 515 LEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDL 549
>gnl|CDD|227418 COG5086, COG5086, Uncharacterized conserved protein [Function
unknown].
Length = 218
Score = 27.6 bits (61), Expect = 9.4
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 187 PLPSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQTTLHRIYGKFLGLRA 246
P ++ + LD I + + V + L IAK S +T L R+ KF+ +R+
Sbjct: 42 PYALHLI-----DRFLDRIS-EQTEHVKIALGKSIAKNNESILMETELERV--KFV-VRS 92
Query: 247 YIRKQINNIFYRFIYETEHHNGIAEL 272
YIR ++ I Y+ N + L
Sbjct: 93 YIRTRLKKIDKNLYYDLSDENSLILL 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.142 0.431
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,587,504
Number of extensions: 2227759
Number of successful extensions: 2766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2761
Number of HSP's successfully gapped: 43
Length of query: 394
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 295
Effective length of database: 6,546,556
Effective search space: 1931234020
Effective search space used: 1931234020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)