RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14681
(394 letters)
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE
subunit gamma isoform; heat repeat, signaling protein,
hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo
sapiens} SCOP: a.118.1.20
Length = 449
Score = 205 bits (522), Expect = 5e-62
Identities = 174/355 (49%), Positives = 207/355 (58%), Gaps = 59/355 (16%)
Query: 38 TEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 97
TE +V FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES
Sbjct: 88 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 147
Query: 98 PDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 157
PDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI
Sbjct: 148 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207
Query: 158 FYRTIHG-LIYNALKLFMEMNQKLFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVP 216
FYR I+ +N + +E+ + + FA PL KV++P
Sbjct: 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKE--------------EHKIFLLKVLLP 253
Query: 217 LFHQIAKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 276
L K +S H Q L +FL + + + + ++ + H L L
Sbjct: 254 LH--KVKSLSVYHPQ--LAYCVVQFLEKDSTLTEPVVMALLKY-WPKTHSPKEVMFLNEL 308
Query: 277 GSIINGFALPLKDEHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWP 336
I L + + +F +K++ +F S + AE
Sbjct: 309 EEI-----LDVIEPSEF--VKIMEPLF--RQLAKCVSSPHFQVAE--------------- 344
Query: 337 HLQLVYEFFLRYVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK 391
RALYYWNNEY M+LI+DNA I+PIMFP+LYRNSKTHWNK
Sbjct: 345 ---------------RALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNK 384
Score = 34.8 bits (79), Expect = 0.045
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 150 IRKQINNIFYRTIHGLIYNALKLFMEMNQKLFDEFA 185
+ + + +TIHGLIYNALKLFMEMNQKLFD+
Sbjct: 374 LYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCT 409
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; PP2A, shugoshin, nucleus, phosphoprotein,
hydrolase, iron, M metal-binding, methylation, protein
phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo
sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Length = 403
Score = 202 bits (515), Expect = 2e-61
Identities = 174/355 (49%), Positives = 207/355 (58%), Gaps = 59/355 (16%)
Query: 38 TEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 97
TE +V FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES
Sbjct: 55 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 114
Query: 98 PDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 157
PDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI
Sbjct: 115 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 174
Query: 158 FYRTIHG-LIYNALKLFMEMNQKLFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVP 216
FYR I+ +N + +E+ + + FA PL KV++P
Sbjct: 175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKE--------------EHKIFLLKVLLP 220
Query: 217 LFHQIAKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 276
L K +S H Q L +FL + + + + ++ + H L L
Sbjct: 221 LH--KVKSLSVYHPQ--LAYCVVQFLEKDSTLTEPVVMALLKY-WPKTHSPKEVMFLNEL 275
Query: 277 GSIINGFALPLKDEHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWP 336
I L + + +F +K++ +F S + AE
Sbjct: 276 EEI-----LDVIEPSEF--VKIMEPLF--RQLAKCVSSPHFQVAE--------------- 311
Query: 337 HLQLVYEFFLRYVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK 391
RALYYWNNEY M+LI+DNA I+PIMFP+LYRNSKTHWNK
Sbjct: 312 ---------------RALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNK 351
Score = 37.0 bits (85), Expect = 0.009
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 150 IRKQINNIFYRTIHGLIYNALKLFMEMNQKLFDE 183
+ + + +TIHGLIYNALKLFMEMNQKLFD+
Sbjct: 341 LYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDD 374
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A
{Homo sapiens} SCOP: a.118.1.20
Length = 392
Score = 197 bits (501), Expect = 2e-59
Identities = 150/261 (57%), Positives = 164/261 (62%), Gaps = 60/261 (22%)
Query: 38 TEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 97
TE +V FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES
Sbjct: 100 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 159
Query: 98 PDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN- 156
PDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN
Sbjct: 160 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219
Query: 157 ----IFYRTIHGLIYNALKLF-----------MEMNQKLFDEFAFPL------------- 188
I+ H I L++ E ++ + PL
Sbjct: 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 279
Query: 189 -------------------------------PSQVMFLNELEEILDVIEPAEFQKVMVPL 217
P +VMFLNELEEILDVIEP+EF K+M PL
Sbjct: 280 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 339
Query: 218 FHQIAKCVSSSHFQTTLHRIY 238
F Q+AKCVSS HFQ +Y
Sbjct: 340 FRQLAKCVSSPHFQVAERALY 360
Score = 135 bits (340), Expect = 3e-36
Identities = 122/322 (37%), Positives = 151/322 (46%), Gaps = 56/322 (17%)
Query: 122 DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRTIHGLIYNALKLFMEMNQKLF 181
D + ++ + L + R I + I ++ L F
Sbjct: 71 PLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEF 130
Query: 182 D---EFAFPLPSQVMFLNELEEILDVIEPAEFQ-KVMVPLFHQ--IAKCVSSSHFQ---- 231
D + + E L +E +FQ + Q + + + +
Sbjct: 131 DPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRE 190
Query: 232 -----TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 286
TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP
Sbjct: 191 RDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 250
Query: 287 LKDEHKFFLLKVLLRIFAVN------------------------------LFRTLPPSSN 316
LK+EHK FLLKVLL + V L + P + +
Sbjct: 251 LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHS 310
Query: 317 PNGAEF-----------DPEEDEPTLEAAWPHLQLVYEFFLRYVAERALYYWNNEYFMNL 365
P F +P E +E + L VAERALYYWNNEY M+L
Sbjct: 311 PKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL 370
Query: 366 ITDNATVIVPIMFPALYRNSKT 387
I+DNA I+PIMFP+LYRNSKT
Sbjct: 371 ISDNAAKILPIMFPSLYRNSKT 392
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 5e-09
Identities = 62/359 (17%), Positives = 107/359 (29%), Gaps = 119/359 (33%)
Query: 54 F-RTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE--SPDFQPNIAKKYID 110
F + LP + F +DEPT A E +FL S +P+ ++
Sbjct: 37 FNKILPEPTE----GFA-ADDEPTTPA---------ELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 111 QKFVLQL-LDLFDSEDPRERDFLKTT-LHRIYGKFLGLRAYIRKQINNIF--YRTIHGLI 166
VL L L F E +L+ +H + K L + + Y
Sbjct: 83 ---VLNLCLTEF------ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY------- 126
Query: 167 YNALKLFMEMNQKLFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVS 226
A + + P + A LF + V
Sbjct: 127 ITARIM---AKR--------PFDKK-------------SNSA--------LF----RAVG 150
Query: 227 SSHFQTTLHRIYGKFLGLRAYIRKQINNIFY----RFIYETEHHNGIAELLEILGSIING 282
+ ++ F G Q N Y R +Y+T H + +L++ ++
Sbjct: 151 EGNA-----QLVAIFGG-------QGNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLSE 197
Query: 283 FALPLKDEHKFFLLKVLLRIFAVNLFRTLP-PSSNPNGAEFDPEEDEPTLEAA---WPHL 338
D K F +N+ L PS+ P D+ L + P +
Sbjct: 198 LIRTTLDAEKVFTQ-------GLNILEWLENPSNTP---------DKDYLLSIPISCPLI 241
Query: 339 QLVYEFFLRY-VAERALYYWNNEYFMNL--ITDNATVIVPIMFPALYRNSKTHWNKFLK 394
++ Y V + L + E L T ++ +V + A + + W F
Sbjct: 242 GVIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE---TDS-WESFFV 294
Score = 37.7 bits (87), Expect = 0.007
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 105 AKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRTIH 163
A + + +LD+ +P T+H F G + IR+ + + + TI
Sbjct: 1649 ADNHFKDTYGFSILDIV-INNPVNL-----TIH-----FGGEKGKRIRENYSAMIFETIV 1697
Query: 164 GLIYNALKLFMEMNQKLFDEFAFPLPSQVMFLNELEEILDVIE---PA 208
K+F E+N+ + F +E + +L + PA
Sbjct: 1698 DGKLKTEKIFKEINEHS---------TSYTFRSE-KGLLSATQFTQPA 1735
Score = 34.6 bits (79), Expect = 0.060
Identities = 72/461 (15%), Positives = 135/461 (29%), Gaps = 182/461 (39%)
Query: 6 ALEERLEASDQFSRRNCLLF--RGIPEA--DPDKRETEEDCQALVMAFAVNLFRTLPPSS 61
AL A + + + +F +G + + + R+ + LV TL
Sbjct: 144 AL---FRAVGEGNAQLVAIFGGQGNTDDYFE-ELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 62 NPNGAEFDPEEDEPTLEAAWPH-LQLVYEFFLRFLESPDFQPNIAKKYIDQKFV----LQ 116
E + L + L +LE+P P+ Y+ + +
Sbjct: 200 ----------RTTLDAEKVFTQGLNI-----LEWLENPSNTPDKD--YLLSIPISCPLIG 242
Query: 117 LLDLFDSEDPRERDFLKTTLH-RIYGKFLGLR-AYIRKQINNIFYRTIH--GLI------ 166
++ L H + K LG +R + T H GL+
Sbjct: 243 VIQL---------------AHYVVTAKLLGFTPGELRSYLKGA---TGHSQGLVTAVAIA 284
Query: 167 --------YNALKLFMEMNQKLFDEF-------AFP---LPSQVMFLNELEEILDVIEPA 208
+ +++ + + LF F A+P LP ++ D +E
Sbjct: 285 ETDSWESFFVSVRKAITV---LF--FIGVRCYEAYPNTSLPPSIL--------EDSLENN 331
Query: 209 EFQKVMVPLFHQIAKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNG 268
E V P+ L + ++Q+ ++ +T H
Sbjct: 332 E--GVPSPM------------------------LSISNLTQEQVQ----DYVNKTNSHLP 361
Query: 269 IAELLEILGSIING---FAL--PLKDEHKFFL--LKVLLR-IFA---------------- 304
+ +EI S++NG + P + L L + LR A
Sbjct: 362 AGKQVEI--SLVNGAKNLVVSGPPQS-----LYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 305 --VNLFRTLPPSSNP------NGAEFDPEEDEPTLEAAWPHLQL---VYEFF----LRYV 349
N F LP +S P A +D ++ + VY+ F LR +
Sbjct: 415 KFSNRF--LPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 350 AERALYYWNNEYFMNLITDNATVIV--PIMFPALYRNSKTH 388
+ ++ I+ P+ + + TH
Sbjct: 472 SG------------SISERIVDCIIRLPVKWETTTQFKATH 500
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 55/341 (16%), Positives = 105/341 (30%), Gaps = 108/341 (31%)
Query: 84 LQLVYEFFLRFLESPDFQPN-IAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGK 142
L++ Y+F + +++ QP+ + + YI+Q+ L D + F K + R+
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------NDNQV--FAKYNVSRLQ-P 136
Query: 143 FLGLRAYIRKQINNIFYRTIHG--------LIYNALKLFMEMNQKLFDEFAFPLPSQVMF 194
+L LR + ++ I G + + + K+ + F ++ +
Sbjct: 137 YLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCL-----SYKVQCKMDF----KIFW 186
Query: 195 LN--ELEEILDVIEPAEFQKVMVPLFHQIAK--CVSSSHFQTTLHRIYGKFLGLRAYIRK 250
LN V+E + L +QI S H RI+ ++A +R
Sbjct: 187 LNLKNCNSPETVLEM------LQKLLYQIDPNWTSRSDHSSNIKLRIHS----IQAELR- 235
Query: 251 QINNIFYRFIYETEHHNGIAELLEIL-----GSIINGFALPLKDEHKFFLLKVLL--R-- 301
R + + N LL +L N F K+LL R
Sbjct: 236 -------RLLKSKPYENC---LL-VLLNVQNAKAWNAFN---------LSCKILLTTRFK 275
Query: 302 --IFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRYVAERALYYWNN 359
++ T S + + P+E + L+Y+ R
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVK--------------SLLLKYLDCR------- 314
Query: 360 EYFMNLITD---NATVIVPI---MFPALYRNSKTHWNKFLK 394
D P + R+ W+ +
Sbjct: 315 ------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Score = 48.7 bits (115), Expect = 3e-06
Identities = 48/296 (16%), Positives = 96/296 (32%), Gaps = 63/296 (21%)
Query: 28 IPEADPDKRETEEDCQALVMAFAVNLFRTLPP---SSNPN-----GAEFDPEEDEPTLEA 79
I T ++ ++L++ + + LP ++NP D
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI---RDGLATWD 345
Query: 80 AWPHLQL-----VYEFFLRFLESPDFQPNIAKKYI---DQKFVLQLLDLF----DSEDPR 127
W H+ + E L LE +++ + + LL L D
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 128 ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRTIHGLIYNALKLFME----MNQKLFDE 183
+ LH+ + + KQ I + Y LK+ +E +++ + D
Sbjct: 406 V---VVNKLHK--------YSLVEKQPKESTIS-IPSI-YLELKVKLENEYALHRSIVDH 452
Query: 184 FAFP--LPSQVMFLNELEE-----I---LDVIEPAE----FQKVMVPL-F------HQIA 222
+ P S + L++ I L IE E F+ V + F H
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 223 KCVSSSHFQTTLH--RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 276
+S TL + Y ++ +++ N F+ + E + ++ ++L
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Score = 43.7 bits (102), Expect = 1e-04
Identities = 47/327 (14%), Positives = 95/327 (29%), Gaps = 100/327 (30%)
Query: 65 GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQ-----LLD 119
PE L+ + + + + + + + + + LL
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 120 LFDSEDPRE-RDF------LKTTLHRIYGKFLGLRAYIRKQINNIFYRTIHGLIY-NALK 171
L + ++ + F L TT R L A I+ + L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKS 305
Query: 172 LFME-MNQKLFDEFAFPLPSQV---------------------------MFLNELEEI-- 201
L ++ ++ + D LP +V + ++L I
Sbjct: 306 LLLKYLDCRPQD-----LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 202 --LDVIEPAEFQK-----------VMVP------LFHQ---------IAKCVSSS----H 229
L+V+EPAE++K +P ++ + K S
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 230 FQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEIL-GSIINGFALPLK 288
+ + I +L L + ++ N E H I + I + P
Sbjct: 421 PKESTISIPSIYLEL----KVKLEN-------EYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 289 DEHKF-FL---LKVLLRIFAVNLFRTL 311
D++ + + LK + + LFR +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMV 496
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 29.5 bits (67), Expect = 2.1
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 180 LFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQTTLHRIYG 239
F PLP+ VM ++L P E + L + ++ S+ Q L ++
Sbjct: 149 FVQHFPHPLPALVMC-----QLLGF--PLEDYDTVGRLSIETNLGLALSNDQDILVKVEQ 201
Query: 240 KFLGLRAYIRKQI 252
+ Y+ I
Sbjct: 202 GLGRMFDYLVAAI 214
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 29.1 bits (66), Expect = 2.5
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 180 LFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQTTLHRIYG 239
+ DE A+PL + + +L + PA + + + + + R +
Sbjct: 129 VVDELAYPLALRAVL-----GLLGL--PAADWGAVGRWSRDVGRTLDRGASAEDMRRGHA 181
Query: 240 KFLGLRAYIRKQI 252
Y+ + +
Sbjct: 182 AIAEFADYVERAL 194
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 29.2 bits (66), Expect = 2.6
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 66 AEFDPEE-DEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIA 105
+++DP +P + ++E + + N
Sbjct: 74 SKYDPRIYGTIWGFWKYP--EKIWEVIRDISSDYEIEINNG 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.2
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 13/38 (34%)
Query: 71 EEDE-PTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKK 107
E+ L+A+ L+L Y + D P +A K
Sbjct: 18 EKQALKKLQAS---LKL-Y--------ADDSAPALAIK 43
>3kcg_I Antithrombin-III, ATIII; michaelis complex, blood coagulation,
calcium, disulfide bond, EGF-like domain, glycoprotein,
hemophilia, hydrolase; HET: NAG FUC MAN NTP; 1.70A
{Homo sapiens} PDB: 1e04_I* 1ath_A 1ant_L* 1br8_L
1azx_I* 1dzh_L* 1e03_L* 1dzg_L* 1e05_L* 1jvq_L* 1lk6_L*
1nq9_I* 1oyh_L* 1r1l_L* 1sr5_A* 2ant_L* 2beh_L* 2hij_L*
2znh_A* 3evj_I* ...
Length = 432
Score = 28.4 bits (64), Expect = 4.9
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 33 PDKRETEEDCQALVMA---FAVNLFRTLPPSSNPNG 65
T L A FA ++ L S N N
Sbjct: 39 KIPEATNRRVWELSKANSRFATTFYQHLADSKNDND 74
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.7 bits (64), Expect = 5.1
Identities = 9/83 (10%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 160 RTIHGLIYNALKLFMEMNQKLFDEFAFP-----LPSQVMFLNELEEILDVIEPAEFQKVM 214
++ + L + + L +QVM+ +E+ ++ +F K
Sbjct: 473 LSVFTQFRDCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELVEK---CLQTNQFSKYW 529
Query: 215 VPLFHQIAKCVSSSHFQTTLHRI 237
+ +I + + + +
Sbjct: 530 KEVDMKIKGLLDKLNKSSDNVKK 552
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.4 bits (63), Expect = 5.1
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 9/72 (12%)
Query: 216 PLFHQI-----AKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIY-ETE---HH 266
+H + V + + + +F Y +TE +H
Sbjct: 246 MTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYH 305
Query: 267 NGIAELLEILGS 278
+ E LE+
Sbjct: 306 PKLKEWLEVATF 317
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 28.0 bits (63), Expect = 5.7
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 180 LFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQTTLHRIYG 239
+ A M +L + P + ++ + S+ + R
Sbjct: 129 ARRDLAVVPTHVTMA-----RVLQL--PEDDADAVMEAMFEAMLMQSAEPADGDVDRAAV 181
Query: 240 KFLGLRAYIRKQI 252
F L A + + +
Sbjct: 182 AFGYLSARVAEML 194
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.0 bits (62), Expect = 5.7
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 9/72 (12%)
Query: 216 PLFHQI-----AKCVSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIY-ETE---HH 266
+H + V + + + +F Y +TE +H
Sbjct: 246 MTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYH 305
Query: 267 NGIAELLEILGS 278
+ E LE+
Sbjct: 306 PKLKEWLEVATF 317
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid
chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens}
PDB: 2ykp_A 2ykq_A 2ldy_A
Length = 233
Score = 27.7 bits (60), Expect = 6.5
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 7 LEERLEASDQFSRRNCLLFRGIPEADPDKRETEEDCQALVMAFAVNLFRTLPPSSNPN 64
E+ L+ + +R L G+PE+D E + + F L +N
Sbjct: 39 NEQSLQEIWDYVKRPNLRLIGVPESD---VENGTKLENTLQDIIQENFPNLARQANVQ 93
>2oay_A C1-inhibitor, plasma protease C1 inhibitor, C1 INH, C1INH; latent
serpin, RCL insertion, immune system,hydrolase inhibi;
HET: NAG; 2.35A {Homo sapiens}
Length = 390
Score = 27.6 bits (62), Expect = 7.6
Identities = 6/40 (15%), Positives = 10/40 (25%), Gaps = 3/40 (7%)
Query: 29 PEADPDKRETEEDCQALVMA---FAVNLFRTLPPSSNPNG 65
P E+ L A F++ L+
Sbjct: 16 PVTLCSDLESHSTEAVLGDALVDFSLKLYHAFSAMKKVET 55
>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein
transport; 2.42A {Homo sapiens} PDB: 3ajb_A
Length = 334
Score = 27.4 bits (60), Expect = 8.4
Identities = 28/222 (12%), Positives = 59/222 (26%), Gaps = 25/222 (11%)
Query: 37 ETEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQ---------LV 87
+ C V++ L L N + W L+ V
Sbjct: 21 SNQRTCNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTVAV 80
Query: 88 YEFFLRFLESPDFQPNI--AKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLG 145
Y + + Q NI Y+D V + + ++ +L + H +
Sbjct: 81 YSTCMLVVLL-RVQLNIIGGYIYLDNAAVGKNGTTILAPPDVQQQYLSSIQHLLGDGLTE 139
Query: 146 LRAYIRKQINNIF----------YRTIHGLIYNALKLFMEMNQKLFDEFAFPLPSQVMFL 195
L I++ + + + + L + + P ++
Sbjct: 140 LITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLSHYM 199
Query: 196 NELEEILDVIEPAEFQ---KVMVPLFHQIAKCVSSSHFQTTL 234
EE ++ + L ++ + S F T L
Sbjct: 200 MPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVL 241
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM,
iron, trans ION transport, proteobacteria, iron
transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica}
SCOP: e.62.1.1 PDB: 2j0r_A*
Length = 345
Score = 27.6 bits (61), Expect = 8.5
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 43 QALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFF 91
+AL+ F L +P + ++A W + V+EFF
Sbjct: 151 EALLAQFITTENPELQLEPLSAPEVTEPTATDEAVDAEWRAMTDVHEFF 199
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 27.6 bits (62), Expect = 8.7
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 180 LFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQTTLHRIYG 239
+ +FAFPL S V+ I+ V P E ++ + + + + + + L
Sbjct: 130 VISDFAFPLASFVIA-----NIIGV--PEEDREQLKEWAASLIQTIDFTRSRKALTEGNI 182
Query: 240 KFLGLRAYIRKQI 252
+ AY ++ I
Sbjct: 183 MAVQAMAYFKELI 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.142 0.431
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,499,591
Number of extensions: 410305
Number of successful extensions: 1322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1314
Number of HSP's successfully gapped: 65
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.4 bits)