RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14681
         (394 letters)



>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase
           2A regulatory subunit B56-gamma {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 343

 Score =  221 bits (566), Expect = 4e-70
 Identities = 153/261 (58%), Positives = 167/261 (63%), Gaps = 60/261 (22%)

Query: 38  TEEDCQALVMAFAVNLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 97
           TE     +V  FAVN+FRTLPPSSNP GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES
Sbjct: 59  TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 118

Query: 98  PDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 157
           PDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI
Sbjct: 119 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 178

Query: 158 FYRTIHGL-----IYNALKLF-----------MEMNQKLFDEFAFPL------------- 188
           FYR I+       I   L++             E ++    +   PL             
Sbjct: 179 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 238

Query: 189 -------------------------------PSQVMFLNELEEILDVIEPAEFQKVMVPL 217
                                          P +VMFLNELEEILDVIEP+EF K+M PL
Sbjct: 239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 298

Query: 218 FHQIAKCVSSSHFQTTLHRIY 238
           F Q+AKCVSS HFQ     +Y
Sbjct: 299 FRQLAKCVSSPHFQVAERALY 319



 Score =  134 bits (340), Expect = 6e-37
 Identities = 113/256 (44%), Positives = 133/256 (51%), Gaps = 60/256 (23%)

Query: 165 LIYNALKLFMEMNQKLFDEFAFPLPSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKC 224
           L+Y     F+E     F            F+ +L E+ D  +P E   +           
Sbjct: 107 LVYEFFLRFLESPD--FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFL----------- 153

Query: 225 VSSSHFQTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 284
                 +TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA
Sbjct: 154 ------KTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 207

Query: 285 LPLKDEHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEF---DPEEDEPTLEAA---WP-- 336
           LPLK+EHK FLLKVLL +  V       P       +F   D    EP + A    WP  
Sbjct: 208 LPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKT 267

Query: 337 -----------------------HLQLVYEFFLRY----------VAERALYYWNNEYFM 363
                                   ++++   F +           VAERALYYWNNEY M
Sbjct: 268 HSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIM 327

Query: 364 NLITDNATVIVPIMFP 379
           +LI+DNA  I+PIMFP
Sbjct: 328 SLISDNAAKILPIMFP 343



 Score = 81.0 bits (200), Expect = 1e-17
 Identities = 50/103 (48%), Positives = 65/103 (63%), Gaps = 14/103 (13%)

Query: 271 ELLEILGSIINGFALPLKDEHKFFLLKVLLRIFAVNLFRTLPPSSNPNGAEFDPEEDEPT 330
           E++E +    N    P+  E        ++ +FAVN+FRTLPPSSNP GAEFDPEEDEPT
Sbjct: 46  EMVEYITHNRNVITEPIYPE--------VVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPT 97

Query: 331 LEAAWPHLQLVYEFFLRYVAERALY------YWNNEYFMNLIT 367
           LEAAWPHLQLVYEFFLR++            Y + ++ + L+ 
Sbjct: 98  LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLE 140


>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
           1, different strains [TaxId: 10298]}
          Length = 329

 Score = 28.0 bits (62), Expect = 1.9
 Identities = 16/133 (12%), Positives = 29/133 (21%), Gaps = 5/133 (3%)

Query: 133 KTTLHRIYGKFLGLRAYIRKQINNIFYRTIHG-----LIYNALKLFMEMNQKLFDEFAFP 187
           KTT  ++          +       ++R +        IY       +      D     
Sbjct: 17  KTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVM 76

Query: 188 LPSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQTTLHRIYGKFLGLRAY 247
             +Q+           V+ P    +         A  +            Y     L   
Sbjct: 77  TSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGS 136

Query: 248 IRKQINNIFYRFI 260
           +  Q    F   I
Sbjct: 137 MTPQAVLAFVALI 149


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 26.6 bits (59), Expect = 5.1
 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 9/38 (23%)

Query: 366 ITDNATVI-------VPI--MFPALYRNSKTHWNKFLK 394
            TDNA  I       V I          ++  WN  LK
Sbjct: 131 FTDNAKTIIVQLNTSVEINCTGAGHCNIARAKWNNTLK 168


>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
           1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 267

 Score = 26.3 bits (57), Expect = 6.5
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 64  NGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQP 102
             A F+PE     L+ +  + +   E     L  PDFQ 
Sbjct: 10  ASATFNPELITHILDGSPENTRRRREIENLILNDPDFQH 48


>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 327

 Score = 25.8 bits (57), Expect = 9.5
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 123 SEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ--INNIFYRTIH 163
            +  R+   LK+T+  I+       A + ++  +       IH
Sbjct: 121 GDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQIH 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,604,763
Number of extensions: 81271
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 21
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.9 bits)