BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14682
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 169/235 (71%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V + VFSSS+TVYG P++LP E HPTG GCTNPYGKSK+F+EE+++DL
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTG-GCTNPYGKSKFFIEEMIRDLCQ---- 173
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
W+++ LRYFNP G+H SG IGEDP GIPNNLMPY+SQVA+
Sbjct: 174 ----------------ADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAI 217
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR+ L VFG+DYDT+DG+GVRDYIH++DLA+GH+ AL KL K Q G + YNLGTGTG
Sbjct: 218 GRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKL---KEQCGCRIYNLGTGTG 274
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
YSV +MV+A +A K IPY+VV RREGD+A+ Y + SLA++EL W A GLD+M
Sbjct: 275 YSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRM 329
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGGAGYIGSHTV+ LLE GY VV+DN NA R + PESL+RV+ LTG++VE+
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGS-LPESLRRVQELTGRSVEFE 63
Query: 307 EVDILQVSDLREIFSK 322
E+DIL L+ +F K
Sbjct: 64 EMDILDQGALQRLFKK 79
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 169/235 (71%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V + VFSSS+TVYG P++LP E HPTG GCTNPYGKSK+F+EE+++DL
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTG-GCTNPYGKSKFFIEEMIRDLCQ---- 173
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
W+++ LRYFNP G+H SG IGEDP GIPNNLMPY+SQVA+
Sbjct: 174 ----------------ADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAI 217
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR+ L VFG+DYDT+DG+GVRDYIH++DLA+GH+ AL KL K Q G + YNLGTGTG
Sbjct: 218 GRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKL---KEQCGCRIYNLGTGTG 274
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
YSV +MV+A +A K IPY+VV RREGD+A+ Y + SLA++EL W A GLD+M
Sbjct: 275 YSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRM 329
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGGAGYIGSHTV+ LLE GY VV+DN NA R + PESL+RV+ LTG++VE+
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGS-LPESLRRVQELTGRSVEFE 63
Query: 307 EVDILQVSDLREIFSK 322
E+DIL L+ +F K
Sbjct: 64 EMDILDQGALQRLFKK 79
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 281 bits (719), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 168/235 (71%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V + VFSSS+TVYG P++LP E HPTG GCTNPYGKSK+F+EE+++DL
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTG-GCTNPYGKSKFFIEEMIRDLCQ---- 173
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
W+ + LRYFNP G+H SG IGEDP GIPNNLMPY+SQVA+
Sbjct: 174 ----------------ADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAI 217
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR+ L VFG+DYDT+DG+GVRDYIH++DLA+GH+ AL KL K Q G + YNLGTGTG
Sbjct: 218 GRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKL---KEQCGCRIYNLGTGTG 274
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
YSV +MV+A +A K IPY+VV RREGD+A+ Y + SLA++EL W A GLD+M
Sbjct: 275 YSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRM 329
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGGAGYIGSHTV+ LLE GY VV+DN NA R + PESL+RV+ LTG++VE+
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGS-LPESLRRVQELTGRSVEFE 63
Query: 307 EVDILQVSDLREIFSK 322
E+DIL L+ +F K
Sbjct: 64 EMDILDQGALQRLFKK 79
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSSS+TVYG +P+ E PTG +PYGKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTGT-PQSPYGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPACWADASKADRELNWRVTRTLDEM 321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSSS+TVYG +P+ E PTG +PYGKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSSATVYGDQPKIPYVESFPTGT-PQSPYGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSSS+TVYG +P+ E PTG +PYGKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTGT-PQSPYGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSS++TVYG +P+ E PTG +PYGKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSAATVYGDQPKIPYVESFPTGT-PQSPYGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 240 bits (613), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSSS+TVYG +P+ E PTG +P+GKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSSATVYGDQPKIPYVESFPTGT-PQSPFGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 240 bits (613), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSS++TVYG +P+ E PTG +PYGKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSAATVYGDNPKIPYVESFPTGT-PQSPYGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 240 bits (613), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSS++TVYG +P+ E PTG +PYGKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSTATVYGDNPKIPYVESFPTGT-PQSPYGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSS++TVYG +P+ E PTG +P+GKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSAATVYGDQPKIPYVESFPTGT-PQSPFGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 153/235 (65%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSS++TVYG +P+ E PTG +P+GKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSAATVYGDNPKIPYVESFPTGT-PQSPFGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 152/235 (64%), Gaps = 24/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+ V +F+FSS +TVYG +P+ E PTG +PYGKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSVATVYGDNPKIPYVESFPTGT-PQSPYGKSKLMVEQILTDLQKA--- 166
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ DW I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QVAV
Sbjct: 167 -----------------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
GRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G G
Sbjct: 210 GRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKL---ANKPGVHIYNLGAGVG 266
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 267 NSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ R L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-------SVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIF 320
E DI + + EI
Sbjct: 56 EGDIRNEALMTEIL 69
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 149/235 (63%), Gaps = 25/235 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M+E V VFSSS+TVYG P+ P E P TNPYG++K E+IL+D+ +
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETFPLS--ATNPYGQTKLMAEQILRDVEAAD-- 171
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
W + +LRYFNPVG+H SG IGEDP GIPNNLMPY++QVAV
Sbjct: 172 ------------------PSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAV 213
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
G+ +KL VFG DY T DG+GVRDYIH++DLA GH+ ALD L + + NLGTG G
Sbjct: 214 GKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDAL---ERRDASLTVNLGTGRG 270
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
YSV E+V+AF +A + +PYE+V RR GD+A Y + + A + + W+A+ L++M
Sbjct: 271 YSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERM 325
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
MS ILVTGGAGYIGSHT V LL HGY+VV+ DNLVN+ R E++ R+E +TG
Sbjct: 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKR-------EAIARIEKITG 54
Query: 301 KTVEYHEVDILQVSDLREIF 320
KT +HE D+ L IF
Sbjct: 55 KTPAFHETDVSDERALARIF 74
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 150/234 (64%), Gaps = 26/234 (11%)
Query: 1 MQEFKVYHFVFSSSSTVYGT----PKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLAS 56
MQ++ V FVFSSS+TVYG P +P E+ P G TNPYG +KY +E IL DL
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGP--TNPYGHTKYAIENILNDL-- 177
Query: 57 FXXXXXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYIS 116
NS +S W LRYFNP+G+HPSG IGEDP GIPNNL+PY++
Sbjct: 178 ----------------YNSDKKS-WKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMA 220
Query: 117 QVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGF-KAYNL 175
QVAVGRR+KL +FGDDYD++DG+ +RDYIH++DLA+GH+ AL L G + +NL
Sbjct: 221 QVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNL 280
Query: 176 GTGTGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAK 229
G+G G +VFE+ AF +A ++PY+V GRR GD+ + AK+EL W+ +
Sbjct: 281 GSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTE 334
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGK 301
S K +LVTGGAGYIGSHTVV L+E+GY+ VV DNL N+ +S+ R+E LT
Sbjct: 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTY-------DSVARLEVLTKH 61
Query: 302 TVEYHEVDILQVSDLREIFSK 322
+ ++EVD+ L ++F +
Sbjct: 62 HIPFYEVDLCDRKGLEKVFKE 82
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 124/230 (53%), Gaps = 27/230 (11%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXX 60
M EFKV F+FSS++ YG TE+ T TN YG++K +E++L
Sbjct: 105 MDEFKVDKFIFSSTAATYGEVDVDLITEE--TMTNPTNTYGETKLAIEKMLH-------- 154
Query: 61 XXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
W + + I RYFN G+ P+G IGED + +L+P + QVA+
Sbjct: 155 -----------WYSQASNLRYKI--FRYFNVAGATPNGIIGED-HRPETHLIPLVLQVAL 200
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
G+R+K+M+FGDDY+T DG+ +RDYIH+ DL H L L G ++ F YNLG G G
Sbjct: 201 GQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNG-GESDF--YNLGNGNG 257
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKY 230
+SV E+V A E IP EV RR GD A + AK++L W+ +Y
Sbjct: 258 FSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRY 307
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 14/76 (18%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
IL+ GGAGYIGSH V L++ G +VVVVDNL +TG +++ + +++
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNL-------QTGHEDAIT-------EGAKFY 49
Query: 307 EVDILQVSDLREIFSK 322
D+ + LR++F++
Sbjct: 50 NGDLRDKAFLRDVFTQ 65
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 114/252 (45%), Gaps = 43/252 (17%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTE-----DHPTGQGCTNPYGKSKYFVEEILKDLA 55
M K +FSSS+ ++G P + D + +PYG+SK E +++D A
Sbjct: 131 MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCA 190
Query: 56 SFXXXXXXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNG----IPNNL 111
I LRYFN G+H GDIGE G IP L
Sbjct: 191 EAYGIKG---------------------ICLRYFNACGAHEDGDIGEHYQGSTHLIPIIL 229
Query: 112 MPYISQVAVGRR----------KKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALD-- 159
+S +A +R K++ +FG DY T DG+ VRDY+H+ DLA H+ ALD
Sbjct: 230 GRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYV 289
Query: 160 -KLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDAS 218
KL F +NLGT GYSV E+++ + IP GRREGD A +
Sbjct: 290 EKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASD 349
Query: 219 LAKKELAWEAKY 230
A++ L W+ KY
Sbjct: 350 KAREVLGWKPKY 361
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 6/56 (10%)
Query: 247 ILVTGGAGYIGSHTVVSLL-EHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGK 301
+LV GGAGYIGSH V +LL + ++VV+VD+LV GK + ++ EN+ K
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGT-----HGKSDHVETRENVARK 55
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 100/235 (42%), Gaps = 47/235 (20%)
Query: 2 QEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXXX 61
++ KV F +++SS+ YG LP ED T +PY +KY V E+ D+ S
Sbjct: 141 RDAKVQSFTYAASSSTYGDHPGLPKVED--TIGKPLSPYAVTKY-VNELYADVFS----- 192
Query: 62 XXXXXXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVG 121
+ I LRYFN G +DPNG ++P
Sbjct: 193 ---------------RCYGFSTIGLRYFNVFGRR------QDPNGAYAAVIP-------- 223
Query: 122 RRKKLMVFGDD-YDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
+ M+ GDD Y DG RD+ +I + + ++ A L ++Q YN+ G
Sbjct: 224 KWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQV----YNIAVGGR 279
Query: 181 YSVFEMVKAFSEACKKN-IPY--EVVGR--REGDIASSYCDASLAKKELAWEAKY 230
S+ ++ A + +N + Y E V R REGD+ S D S A K L + KY
Sbjct: 280 TSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKY 334
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGK 301
+ PK L+TG AG+IGS+ + +LL+ VV +DN TG +L V +L +
Sbjct: 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA-------TGHQRNLDEVRSLVSE 77
Query: 302 TVEYHEVDILQVSDLREI 319
++ +Q D+R +
Sbjct: 78 K-QWSNFKFIQ-GDIRNL 93
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 84 ISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRRKKLMVFGDDYDTKDGSGVRD 143
+SLRY N G +DP+G + + +V G + ++ +G VRD
Sbjct: 166 VSLRYGNVYGPR------QDPHGEAGVVAIFAERVLKG--LPVTLYARKTPGDEGC-VRD 216
Query: 144 YIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEACKKNIPYEVV 203
Y+++ D+AE H AL L G YN+GTG G++ E++ A +EA K +
Sbjct: 217 YVYVGDVAEAHALALFSLEG--------IYNVGTGEGHTTREVLMAVAEAAGKAPEVQPA 268
Query: 204 GRREGDIASSYCDASLAKKELAWEAKYGLDK 234
R GD+ S + L W K G +
Sbjct: 269 PPRPGDLERSVL-SPLKLMAHGWRPKVGFQE 298
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR 282
+LVTGGAG+IGSH V LL G V V+DNL R
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR 38
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR 282
I+VTGGAG+IGSH V L+E GY VVVVDNL + R
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRR 38
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 46/189 (24%)
Query: 6 VYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXXXXXXX 65
V VF+SSSTVYG +P E+ P + YG +K E + A
Sbjct: 105 VRTVVFASSSTVYGDADVIPTPEEEPYKP--ISVYGAAKAAGEVMCATYARLFGV----- 157
Query: 66 XXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRRKK 125
+++RY N VG + D +I ++ RR
Sbjct: 158 ----------------RCLAVRYANVVGPRLRHGVIYD----------FIMKL---RRNP 188
Query: 126 --LMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSV 183
L V G DG+ + Y+++ D E + A K + A F A N+G V
Sbjct: 189 NVLEVLG------DGTQRKSYLYVRDAVEATLAAWKKF--EEMDAPFLALNVGNVDAVRV 240
Query: 184 FEMVKAFSE 192
++ + +E
Sbjct: 241 LDIAQIVAE 249
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 6 VYHFVFSSSSTVY--GTPKFLPFTEDHPTGQGCTN-PYGKSKYFVEEILK 52
V FVF+SS VY P+FLP TEDHP C N PYG +K EE+++
Sbjct: 118 VRRFVFASSGEVYPENRPEFLPVTEDHPL---CPNSPYGLTKLLGEELVR 164
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 104 PNGIPNNLMPYISQVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLG 163
P P L+P A+ KKL ++G DG VRD++H+ D H +A+D +L
Sbjct: 207 PYQYPEKLIPLXVTNAL-EGKKLPLYG------DGLNVRDWLHVTD----HCSAIDVVL- 254
Query: 164 GKSQAGFKAYNLGTG---TGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLA 220
K + G + YN+G T V E + KK+I Y V R G +A
Sbjct: 255 HKGRVG-EVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEY--VTDRLGHDRRYAINAEKX 311
Query: 221 KKELAWEAKYGLDK 234
K E WE KY ++
Sbjct: 312 KNEFDWEPKYTFEQ 325
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 231 GLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLE--HGYNVVVVDNL 277
G + +Y Q + N ILVTGGAG+IGS+ V L+ Y ++ D L
Sbjct: 14 GTENLYFQSNAXN---ILVTGGAGFIGSNFVHYXLQSYETYKIINFDAL 59
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
I+VTGGAG+IGSH V L+E GY VVVVD
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVD 31
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 46/189 (24%)
Query: 6 VYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFXXXXXXXX 65
V VF+SSSTVYG +P E+ P + YG +K E + A
Sbjct: 101 VRTVVFASSSTVYGDADVIPTPEEEPYKP--ISVYGAAKAAGEVMCATYARLFGV----- 153
Query: 66 XXVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRRKK 125
+++RY N VG + D +I ++ RR
Sbjct: 154 ----------------RCLAVRYANVVGPRLRHGVIYD----------FIMKL---RRNP 184
Query: 126 --LMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSV 183
L V G DG+ + Y+++ D E + A K + A F A N+G V
Sbjct: 185 NVLEVLG------DGTQRKSYLYVRDAVEATLAAWKKF--EEMDAPFLALNVGNVDAVRV 236
Query: 184 FEMVKAFSE 192
++ + +E
Sbjct: 237 LDIAQIVAE 245
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 231 GLDKMYLQ-RDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNL 277
G + +Y Q + K IL+TGGAG++GSH L G+ V VVDN
Sbjct: 13 GRENLYFQGHXEKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNF 60
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKP---------ESLKRV 295
K ++V GG GY G T + L + Y V +VDNLV + G + + R
Sbjct: 2 KRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 61
Query: 296 ENLTGKTVEYHEVDILQVSDLREIF 320
+ LTGK++E + DI L E F
Sbjct: 62 KALTGKSIELYVGDICDFEFLAESF 86
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNL 277
K IL+TGGAG++GSH L+ G+ V VVDN
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 38
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILK 52
M++ V VF+S+STVYG K +P ED+PT + YG SK E +++
Sbjct: 101 MRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHP--ISLYGASKLACEALIE 150
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 246 FILVTGGAGYIGSHTVVSLLEHGYNVVVVDNL 277
I+VTGGAG+IGSH VV L +VV+DNL
Sbjct: 3 LIVVTGGAGFIGSH-VVDKLSESNEIVVIDNL 33
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKP---------ESLKRVEN 297
++V GG GY G T + L + Y V +VDNLV + G + + R +
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 298 LTGKTVEYHEVDILQVSDLREIF 320
LTGK++E + DI L E F
Sbjct: 74 LTGKSIELYVGDICDFEFLAESF 96
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKP---------ESLKRVEN 297
++V GG GY G T + L + Y V +VDNLV + G + + R +
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 298 LTGKTVEYHEVDILQVSDLREIF 320
LTGK++E + DI L E F
Sbjct: 74 LTGKSIELYVGDICDFEFLAESF 96
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
IL+TGGAG+IG H +L+ G V V+D+L RV PE + L +E
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTVLDDL----RVPPMIPPEGTGKF--LEKPVLELE 63
Query: 307 EVDILQVSDLREIF 320
E D+ SD+R ++
Sbjct: 64 ERDL---SDVRLVY 74
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVV-VVDNLVNACRVEETGKP 289
++V GGAG++GS+ V LLE G N V VVDNL++A ++ P
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHP 78
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 236 YLQRDMSNPKFILVTGGAGYIGSHTVVSLLE-HGYNVVVVDNLVNACRVEETGKPESLKR 294
Y+ ++ N + IL+TGGAG++GS+ E H VVV + + + +P SL
Sbjct: 3 YIDDELEN-QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGH 61
Query: 295 VENLTGKTVEYHEVDILQVSDLREI 319
+NL G E DI DLR +
Sbjct: 62 FKNLIGFKGEVIAADINNPLDLRRL 86
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLT 299
IL+TGGAG +GS+ + L G+ ++V+DN TGK E L V L+
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFA-------TGKREVLPPVAGLS 68
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLT 299
S+ K + +TG G IGSH LLE G VV +DN TG+ E LK NLT
Sbjct: 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFA-------TGRREHLKDHPNLT 69
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 142 RDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEA 193
RD++ + DLA V A+D + G AY+ +GT ++ E+ A EA
Sbjct: 219 RDFVFVKDLARATVRAVDGV-------GHGAYHFSSGTDVAIKELYDAVVEA 263
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 246 FILVTGGAGYIGSHTVVSLLEHGYNV 271
+LVTG G++ SH V LLEHGY V
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 246 FILVTGGAGYIGSHTVVSLLEHGYNV 271
+LVTG G++ SH V LLEHGY V
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGY-NVVVVDNLVNACR 282
+ I+VTGGAG+IGS+ V +L + G +++VVDNL + +
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 85
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGY-NVVVVDNLVNACR 282
I+VTGGAG+IGS+ V +L + G +++VVDNL + +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 247 ILVTGGAGYIGSHTVVSLL-EHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEY 305
IL+TGGAG+IGS V ++ E VVVVD L A G SL V + +
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA------GNLMSLAPVAQ--SERFAF 55
Query: 306 HEVDILQVSDLREIFSK 322
+VDI ++L +F++
Sbjct: 56 EKVDICDRAELARVFTE 72
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGY------NVVVVDNLVNA 280
+LVTGGAG+IGSH V LL Y V+V+D+L A
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA 42
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGY------NVVVVDNLVNA 280
+LVTGGAG+IGSH V LL Y V+V+D+L A
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA 42
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+L+TGG G++GS+ L G +++V DNL G ++L + +L E+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNL------SRKGATDNLHWLSSL--GNFEFV 55
Query: 307 EVDILQVSDLREIFSK 322
DI +D+ + +K
Sbjct: 56 HGDIRNKNDVTRLITK 71
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
IL+TGGAG+IGS V ++++ D +VN ++ G ESL + E+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKN-----TQDTVVNIDKLTYAGNLESLSDISESNRYNFEH- 56
Query: 307 EVDILQVSDLREIFSK 322
DI +++ IF +
Sbjct: 57 -ADICDSAEITRIFEQ 71
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNV 271
+ VTGG G++GS + SLLE+GY+V
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSV 28
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNV 271
S + + VTG +G+IGS V+ LLE GY V
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERGYTV 32
>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
Length = 260
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 231 GLDKMYLQRDMS-NPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
G + +Y Q + + IL+TG + +G H + LLEHG+ V++
Sbjct: 13 GRENLYFQGHXTLSSAPILITGASQRVGLHCALRLLEHGHRVII 56
>pdb|3AWD|A Chain A, Crystal Structure Of Gox2181
pdb|3AWD|B Chain B, Crystal Structure Of Gox2181
pdb|3AWD|C Chain C, Crystal Structure Of Gox2181
pdb|3AWD|D Chain D, Crystal Structure Of Gox2181
Length = 260
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 235 MYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
MY+++ + + +VTGGA IG V +L E G V++ D
Sbjct: 4 MYMEKLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIAD 44
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 228 AKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
A + + YL + + +VTGGA IG V LLE G NVV+
Sbjct: 2 ASWAKGRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIAS 49
>pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OIC|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OID|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|B Chain B, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|C Chain C, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
Length = 258
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
M K LVTG + +G + L E+GYN+V +N R ++ E+ + +E L G
Sbjct: 1 MEQNKCALVTGSSRGVGKAAAIRLAENGYNIV-----INYARSKKAA-LETAEEIEKL-G 53
Query: 301 KTVEYHEVDILQVSDLREIFSK 322
V + ++ Q + ++E+F +
Sbjct: 54 VKVLVVKANVGQPAKIKEMFQQ 75
>pdb|3F5S|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301
pdb|3F5S|B Chain B, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301
pdb|3GY0|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301 Complexed With Nadp
Length = 255
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 235 MYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKR 294
M L++D+ N + ILVTG + IG ++ +G V+++ R EE + +
Sbjct: 1 MSLKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLG------RNEEKLR-QVASH 53
Query: 295 VENLTGKTVEYHEVDILQVS 314
+ TG+ ++ +D+L +
Sbjct: 54 INEETGRQPQWFILDLLTCT 73
>pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From
Rhizobium Etli Cfn 42
pdb|4DQX|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase From
Rhizobium Etli Cfn 42
pdb|4DQX|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase From
Rhizobium Etli Cfn 42
pdb|4DQX|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase From
Rhizobium Etli Cfn 42
Length = 277
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 231 GLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD-NLVNACRV-EETGK 288
G + +Y Q N + +VTGG IG T ++G VVV D N A RV E G
Sbjct: 14 GTENLYFQSXDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGS 73
Query: 289 PESLKRVENLTGK---------TVEYHEVDIL 311
RV+ + K T ++ VD+L
Sbjct: 74 KAFGVRVDVSSAKDAESXVEKTTAKWGRVDVL 105
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 231 GLDKMYLQRDMSNP-------KFILVTGGAGYIGSHTVVSLLEHGYNVV 272
G + +Y Q M+ P + LVTG +G IG+ +L++ G VV
Sbjct: 12 GRENLYFQGHMARPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVV 60
>pdb|1KO7|A Chain A, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
pdb|1KO7|B Chain B, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
Length = 314
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+L+TG +G S T + L++ G+ +V DN + E K E + R L +E
Sbjct: 147 VLITGDSGIGKSETALELIKRGHRLVADDN----VEIREISKDELIGRAPKLIEHLLEIR 202
Query: 307 EVDILQVSDL 316
+ I+ V L
Sbjct: 203 GLGIINVMTL 212
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 142 RDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEAC--KKNIP 199
R++++ D A+ + AL K + +N+G+G + +E+ + A K N+
Sbjct: 197 REFLYAKDAAKSVIYAL------KQEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLL 250
Query: 200 YEVVGRREGDIASSYCDASLAKKELAWEAKYGL 232
+ EG I SSY D+S AK+ L + Y
Sbjct: 251 VKNPNANEG-IHSSYXDSSKAKELLDFSTDYNF 282
>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|B Chain B, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|C Chain C, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|D Chain D, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
Length = 267
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 231 GLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPE 290
G + +Y Q K +VTG + IG+ L G+ VV+ N E E
Sbjct: 14 GTENLYFQSXXETNKVAIVTGASRGIGAAIAARLASDGFTVVI--NYAGKAAAAE----E 67
Query: 291 SLKRVENLTGKTVEYHEVDILQVSDLREIFS 321
++E GK + + D+ + +R +F+
Sbjct: 68 VAGKIEAAGGKAL-TAQADVSDPAAVRRLFA 97
>pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|A Chain A, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|B Chain B, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|D Chain D, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
Length = 271
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 231 GLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
G + +Y Q +S K +L+TGG+ IG+ + + GY V V
Sbjct: 14 GTENLYFQSXLS--KVVLITGGSRGIGAASALLAARQGYAVAV 54
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 241 MSNPKFILVTGGAGYIGSHTV 261
MS K I+VTGGAG+IGS+ V
Sbjct: 1 MSQFKNIIVTGGAGFIGSNFV 21
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 231 GLDKMYLQRDMSNPKFILVTG-GAGYIGSHTVVSLLEHGYNVVVV 274
GL+K K++L+TG G G IG+ + LL+ G VVV
Sbjct: 662 GLEKAAFNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 706
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 231 GLDKMYLQRDMSNPKFILVTG-GAGYIGSHTVVSLLEHGYNVVVV 274
GL+K K++L+TG G G IG+ + LL+ G VVV
Sbjct: 662 GLEKAAFNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 706
>pdb|3ORF|A Chain A, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|B Chain B, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|C Chain C, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|D Chain D, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
Length = 251
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD-----NLVNACRVEETGKPESLKRVENLT 299
K ILV GG+G +G+ V +N + +D N ++ ++++G+ E +E +
Sbjct: 23 KNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKIN 82
Query: 300 GKTVE 304
K+++
Sbjct: 83 SKSIK 87
>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|B Chain B, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|C Chain C, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|D Chain D, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|E Chain E, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|F Chain F, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|G Chain G, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|H Chain H, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
Length = 262
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 243 NPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
N K LVTG G IG T + L E G + ++D
Sbjct: 6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLD 38
>pdb|3F1L|A Chain A, The 0.95 A Structure Of An Oxidoreductase, Ycik From
E.Coli
pdb|3F1L|B Chain B, The 0.95 A Structure Of An Oxidoreductase, Ycik From
E.Coli
Length = 252
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 238 QRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVEN 297
++D+ N + ILVTG + IG ++ +G V+++ R EE + + +
Sbjct: 6 KQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLG------RNEEKLR-QVASHINE 58
Query: 298 LTGKTVEYHEVDILQVS 314
TG+ ++ +D+L +
Sbjct: 59 ETGRQPQWFILDLLTCT 75
>pdb|3F5Q|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073
pdb|3F5Q|B Chain B, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073
pdb|3GZ4|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073 Complexed With Nadph
pdb|3GZ4|B Chain B, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073 Complexed With Nadph
Length = 262
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 238 QRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVEN 297
++D+ N + ILVTG + IG ++ +G V+++ R EE + + +
Sbjct: 8 KQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLG------RNEEKLR-QVASHINE 60
Query: 298 LTGKTVEYHEVDILQVS 314
TG+ ++ +D+L +
Sbjct: 61 ETGRQPQWFILDLLTCT 77
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 189 AFSEACKKNIPY--EVVGRREGDIASSYCDASLAKKELA 225
++ + CKK P E+ + EGDI +Y DA A+K +A
Sbjct: 27 SWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMA 65
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 247 ILVTGGAGYIGSHTVVSLLEH--GYNVVVVDNL 277
+LVTGG G+IGS+ + +LE + V+ +D L
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKL 38
>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From
Staphylococcus Aureus Complex With Nadph
pdb|3SJ7|B Chain B, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From
Staphylococcus Aureus Complex With Nadph
Length = 252
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
S K LVTG + IG + L E GYNV V
Sbjct: 8 SMTKSALVTGASRGIGRSIALQLAEEGYNVAV 39
>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt
Length = 593
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 208 GDIASSYCDASLAKKELAWEAKYGLDKMY--------LQRDMSNPKFILVTGGAGYIGSH 259
G ++Y S W A G+ KM + D SNP+++ + G A IG
Sbjct: 199 GGFMTTYMAVSFIGGTDGWFA--GVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGL 256
Query: 260 TVVSLLEHGYNVVVVDNLVNACRVEETGK 288
V +L G+N ++ + A V E K
Sbjct: 257 WVANLYYWGFNQYIIQRTLAAKSVSEAQK 285
>pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein
Reductase, Fabg, From Staphylococcus Aureus
pdb|3OSU|B Chain B, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein
Reductase, Fabg, From Staphylococcus Aureus
Length = 246
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
K LVTG + IG + L E GYNV V
Sbjct: 5 KSALVTGASRGIGRSIALQLAEEGYNVAV 33
>pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|C Chain C, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|D Chain D, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
Length = 359
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 155 VTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSY 214
+ D +G +QA ++ Y M + FSE K+N+P + G +A +
Sbjct: 210 IQIFDSWVGALNQADYRTYIKPV--------MNRIFSELAKENVPLIMFGVGASHLAGDW 261
Query: 215 CDASLAKKELAWEAKYGLDK 234
D L L W + G+D+
Sbjct: 262 HDLPLDVVGLDW--RLGIDE 279
>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt
Length = 593
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 208 GDIASSYCDASLAKKELAWEAKYGLDKMY--------LQRDMSNPKFILVTGGAGYIGSH 259
G ++Y S W A G+ KM + D SNP+++ + G A IG
Sbjct: 199 GGFMTTYMAVSFIGGTDGWFA--GVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGL 256
Query: 260 TVVSLLEHGYNVVVVDNLVNACRVEETGK 288
V +L G+N ++ + A V E K
Sbjct: 257 WVANLYYWGFNQYIIQRTLAAKSVSEAQK 285
>pdb|3DH4|A Chain A, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|B Chain B, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|C Chain C, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|D Chain D, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
Length = 530
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 208 GDIASSYCDASLAKKELAWEAKYGLDKMY--------LQRDMSNPKFILVTGGAGYIGSH 259
G ++Y S W A G+ KM + D SNP+++ + G A IG
Sbjct: 170 GGFMTTYMAVSFIGGTDGWFA--GVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGL 227
Query: 260 TVVSLLEHGYNVVVVDNLVNACRVEETGK 288
V +L G+N ++ + A V E K
Sbjct: 228 WVANLYYWGFNQYIIQRTLAAKSVSEAQK 256
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
I+VTG +G +GS V L + GY VV V
Sbjct: 171 IVVTGASGGVGSTAVALLHKLGYQVVAV 198
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 245 KFILVTG-GAGYIGSHTVVSLLEHGYNVVVV 274
K++L+TG G G IG+ + LL+ G VVV
Sbjct: 477 KYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 507
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVDNLVNACR 282
G G +G+ +L++HGY +++ D +AC+
Sbjct: 7 GLGNMGNPMAKNLMKHGYPLIIYDVFPDACK 37
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVDNLVNACR 282
G G +G+ +L++HGY +++ D +AC+
Sbjct: 29 GLGNMGNPMAKNLMKHGYPLIIYDVFPDACK 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,408,795
Number of Sequences: 62578
Number of extensions: 445969
Number of successful extensions: 1419
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 129
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)