RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14682
(322 letters)
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 409 bits (1053), Expect = e-144
Identities = 121/237 (51%), Positives = 153/237 (64%), Gaps = 28/237 (11%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
M+ V +F+FSSS+TVYG +P+ E PTG +PYGKSK VE+IL DL
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTG-TPQSPYGKSKLMVEQILTDL------ 163
Query: 61 LQSLQSSVTQIWLNSVHRSD--WHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQV 118
++ W I LRYFNPVG+HPSGD+GEDP GIPNNLMPYI+QV
Sbjct: 164 ----------------QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQV 207
Query: 119 AVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTG 178
AVGRR L +FG+DY T+DG+GVRDYIH+MDLA+GHV A++KL ++ G YNLG G
Sbjct: 208 AVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA---NKPGVHIYNLGAG 264
Query: 179 TGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
G SV ++V AFS+AC K + Y RREGD+ + + DAS A +EL W LD+M
Sbjct: 265 VGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEM 321
Score = 121 bits (305), Expect = 5e-32
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGG+GYIGSHT V LL++G++V+++DNL N+ K L +E L GK +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-------KRSVLPVIERLGGKHPTFV 55
Query: 307 EVDILQVSDLREIFSK 322
E DI + + EI
Sbjct: 56 EGDIRNEALMTEILHD 71
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 409 bits (1054), Expect = e-144
Identities = 135/237 (56%), Positives = 171/237 (72%), Gaps = 28/237 (11%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
M+ V + VFSSS+TVYG P++LP E HPTG GCTNPYGKSK+F+EE+++DL
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTG-GCTNPYGKSKFFIEEMIRDL------ 171
Query: 61 LQSLQSSVTQIWLNSVHRSD--WHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQV 118
++D W+ + LRYFNP G+H SG IGEDP GIPNNLMPY+SQV
Sbjct: 172 ----------------CQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQV 215
Query: 119 AVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTG 178
A+GRR+ L VFG+DYDT+DG+GVRDYIH++DLA+GH+ AL KL K Q G + YNLGTG
Sbjct: 216 AIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKL---KEQCGCRIYNLGTG 272
Query: 179 TGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
TGYSV +MV+A +A K IPY+VV RREGD+A+ Y + SLA++EL W A GLD+M
Sbjct: 273 TGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRM 329
Score = 122 bits (310), Expect = 1e-32
Identities = 44/79 (55%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 244 PKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTV 303
+ +LVTGGAGYIGSHTV+ LLE GY VV+DN NA R PESL+RV+ LTG++V
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFR-GGGSLPESLRRVQELTGRSV 60
Query: 304 EYHEVDILQVSDLREIFSK 322
E+ E+DIL L+ +F K
Sbjct: 61 EFEEMDILDQGALQRLFKK 79
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 407 bits (1049), Expect = e-143
Identities = 113/237 (47%), Positives = 150/237 (63%), Gaps = 29/237 (12%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
M+E V VFSSS+TVYG P+ P E P TNPYG++K E+IL+D+
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETFPLS--ATNPYGQTKLMAEQILRDV------ 167
Query: 61 LQSLQSSVTQIWLNSVHRSD--WHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQV 118
+D W + +LRYFNPVG+H SG IGEDP GIPNNLMPY++QV
Sbjct: 168 ----------------EAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQV 211
Query: 119 AVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTG 178
AVG+ +KL VFG DY T DG+GVRDYIH++DLA GH+ ALD L + + NLGTG
Sbjct: 212 AVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDAL---ERRDASLTVNLGTG 268
Query: 179 TGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
GYSV E+V+AF +A + +PYE+V RR GD+A Y + + A + + W+A+ L++M
Sbjct: 269 RGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERM 325
Score = 127 bits (321), Expect = 3e-34
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
MS ILVTGGAGYIGSHT V LL HGY+VV+ DNLVN+ K E++ R+E +TG
Sbjct: 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS-------KREAIARIEKITG 54
Query: 301 KTVEYHEVDILQVSDLREIFSK 322
KT +HE D+ L IF
Sbjct: 55 KTPAFHETDVSDERALARIFDA 76
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 402 bits (1034), Expect = e-136
Identities = 109/240 (45%), Positives = 151/240 (62%), Gaps = 26/240 (10%)
Query: 1 MQEFKVYHFVFSSSSTVYG----TPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLAS 56
MQ++ V FVFSSS+TVYG P +P E+ P G TNPYG +KY +E IL DL +
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLG--PTNPYGHTKYAIENILNDLYN 179
Query: 57 FKQKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYIS 116
+ W LRYFNP+G+HPSG IGEDP GIPNNL+PY++
Sbjct: 180 -------------------SDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMA 220
Query: 117 QVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGK-SQAGFKAYNL 175
QVAVGRR+KL +FGDDYD++DG+ +RDYIH++DLA+GH+ AL L ++ + +NL
Sbjct: 221 QVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNL 280
Query: 176 GTGTGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
G+G G +VFE+ AF +A ++PY+V GRR GD+ + AK+EL W+ + ++
Sbjct: 281 GSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDS 340
Score = 119 bits (300), Expect = 5e-30
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
S K +LVTGGAGYIGSHTVV L+E+GY+ VV DNL N+ +S+ R+E LT
Sbjct: 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNS-------TYDSVARLEVLTK 60
Query: 301 KTVEYHEVDILQVSDLREIFSK 322
+ ++EVD+ L ++F +
Sbjct: 61 HHIPFYEVDLCDRKGLEKVFKE 82
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 342 bits (880), Expect = e-117
Identities = 82/260 (31%), Positives = 115/260 (44%), Gaps = 48/260 (18%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKF-------LPFTEDHPTGQGCTNPYGKSKYFVEEILKD 53
M K +FSSS+ ++G P P + +PYG+SK E +++D
Sbjct: 131 MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKS--PESPYGESKLIAERMIRD 188
Query: 54 LASFKQKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNG----IPN 109
A I LRYFN G+H GDIGE G IP
Sbjct: 189 CA---------------------EAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPI 227
Query: 110 NLMPYISQVAVGRR----------KKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALD 159
L +S +A +R K++ +FG DY T DG+ VRDY+H+ DLA H+ ALD
Sbjct: 228 ILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALD 287
Query: 160 KLLGGK---SQAGFKAYNLGTGTGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCD 216
+ F +NLGT GYSV E+++ + IP GRREGD A
Sbjct: 288 YVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAA 347
Query: 217 ASLAKKELAWEAKYG-LDKM 235
+ A++ L W+ KY L+ +
Sbjct: 348 SDKAREVLGWKPKYDTLEAI 367
Score = 94.7 bits (236), Expect = 3e-22
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 247 ILVTGGAGYIGSHTVVSLL-EHGYNVVVVDNLVNACR--VEETGKPESLKRVENLTG--- 300
+LV GGAGYIGSH V +LL + ++VV+VD+LV + ++++ G
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 301 ----KTVEYHEVDILQVSDLREIFSK 322
+ D+ L +F++
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTR 90
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 337 bits (866), Expect = e-116
Identities = 87/236 (36%), Positives = 121/236 (51%), Gaps = 28/236 (11%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
M EFKV F+FSS++ YG TE+ T TN YG++K +E++L +
Sbjct: 105 MDEFKVDKFIFSSTAATYGEVDVDLITEETMTN--PTNTYGETKLAIEKMLHWYS----- 157
Query: 61 LQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
S+ RYFN G+ P+G IGED +L+P + QVA+
Sbjct: 158 ----------------QASNLRYKIFRYFNVAGATPNGIIGEDHRP-ETHLIPLVLQVAL 200
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
G+R+K+M+FGDDY+T DG+ +RDYIH+ DL H L L G YNLG G G
Sbjct: 201 GQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGG---ESDFYNLGNGNG 257
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKY-GLDKM 235
+SV E+V A E IP EV RR GD A + AK++L W+ +Y + +
Sbjct: 258 FSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNVKTI 313
Score = 91.0 bits (227), Expect = 4e-21
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 14/78 (17%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
IL+ GGAGYIGSH V L++ G +VVVVDNL TG +++ +
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQ-------TGHEDAITEG-------AK 47
Query: 305 YHEVDILQVSDLREIFSK 322
++ D+ + LR++F++
Sbjct: 48 FYNGDLRDKAFLRDVFTQ 65
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 247 bits (633), Expect = 8e-81
Identities = 51/237 (21%), Positives = 79/237 (33%), Gaps = 56/237 (23%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
+ V + ++ YG P +P D PT YG SK E L
Sbjct: 123 ASKAGVKRLLNFQTALCYGRPATVPIPIDSPT--APFTSYGISKTAGEAFLMM------- 173
Query: 61 LQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
SD ++SLR N G P IG P + ++
Sbjct: 174 ------------------SDVPVVSLRLANVTG--PRLAIGPIPT--------FYKRLKA 205
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
G++ F D VRD++ + D +L + G + +N+ TG G
Sbjct: 206 GQK----CFCSDT-------VRDFLDMSDFLAIADLSLQE--GRPTG----VFNVSTGEG 248
Query: 181 YSVFEMVKAFSEACKKNI--PYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
+S+ E+ + + P VV D+ S D S + E W+AK
Sbjct: 249 HSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVDFKDT 305
Score = 92.6 bits (231), Expect = 1e-21
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
IL+TGGAG +GS+ + L G+ ++V+DN TGK E L V +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFA-------TGKREVLPPVAG-----LSVI 70
Query: 307 EVDILQVSDLREIFSK 322
E + L F
Sbjct: 71 EGSVTDAGLLERAFDS 86
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 189 bits (483), Expect = 2e-58
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 43/237 (18%)
Query: 1 MQEFKVYHFVFSSSST-VYG-TPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFK 58
+++ V VF+S+ +YG P+ E P +PY SK E L
Sbjct: 104 CRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPR--PKSPYAASKAAFEHYLSVYG--- 158
Query: 59 QKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQV 118
+ L+ +SLRY N G +DP+G ++ ++
Sbjct: 159 -QSYGLKW-----------------VSLRYGNVYGP------RQDPHG-EAGVVAIFAER 193
Query: 119 AVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTG 178
+ + ++ D VRDY+++ D+AE H AL L G YN+GTG
Sbjct: 194 VLKGLP-VTLYARKTPG-DEGCVRDYVYVGDVAEAHALALFSLEG--------IYNVGTG 243
Query: 179 TGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKM 235
G++ E++ A +EA K + R GD+ S W K G +
Sbjct: 244 EGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKL-MAHGWRPKVGFQEG 299
Score = 82.2 bits (204), Expect = 5e-18
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTGGAG+IGSH V LL G V V+DNL TGK E++ K V +
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLA-------TGKRENVP-------KGVPFF 48
Query: 307 EVDILQVSDLREIFSK 322
VD+ + F +
Sbjct: 49 RVDLRDKEGVERAFRE 64
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 171 bits (435), Expect = 2e-51
Identities = 47/240 (19%), Positives = 77/240 (32%), Gaps = 48/240 (20%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
++ V VF+SSSTVYG +P E+ P + YG +K E + A
Sbjct: 100 ARQTGVRTVVFASSSTVYGDADVIPTPEEEPYK--PISVYGAAKAAGEVMCATYA----- 152
Query: 61 LQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+++RY N VG + D +I ++
Sbjct: 153 ----------------RLFGVRCLAVRYANVVGPRLRHGVIYD----------FIMKLRR 186
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
L V GD G+ + Y+++ D E + A K A F A N+G
Sbjct: 187 NP-NVLEVLGD------GTQRKSYLYVRDAVEATLAAWKKFEEMD--APFLALNVGNVDA 237
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRRE------GDIASSYCDASLAKKELAWEAKYGLDK 234
V ++ + +E +V GD+ + K W +
Sbjct: 238 VRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAE 297
Score = 75.3 bits (186), Expect = 1e-15
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
I+VTGGAG+IGSH V L+E GY VVVVDNL +G+ E + + E H
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLS-------SGRREFVN-------PSAELH 48
Query: 307 EVDILQVSDLREIF 320
D+ S I
Sbjct: 49 VRDLKDYSWGAGIK 62
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 170 bits (432), Expect = 6e-51
Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 50/237 (21%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
M++ V VF+S+STVYG K +P ED+PT + YG SK E +++
Sbjct: 101 MRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTH--PISLYGASKLACEALIESYC----- 153
Query: 61 LQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
H D R+ N +G I +I ++
Sbjct: 154 ----------------HTFDMQAWIYRFANVIGRRS------THGVIY----DFIMKLK- 186
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
++L + G+ G + YI+I D + + L + +N+G+
Sbjct: 187 RNPEELEILGN------GEQNKSYIYISDCVDAMLFGLRG--DERVNI----FNIGSEDQ 234
Query: 181 YSVFEMVKAFSEACKKNIPYEVVG---RREGDIASSYCDASLAKKELAWEAKYGLDK 234
V + + E + + G +GD+ K L W+ +Y ++
Sbjct: 235 IKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPRYNSEE 290
Score = 71.0 bits (175), Expect = 3e-14
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
MS I+VTGGAG+IGSH V L E +VV+DNL +G E +
Sbjct: 1 MSL---IVVTGGAGFIGSHVVDKLSE-SNEIVVIDNLS-------SGNEEFVN------- 42
Query: 301 KTVEYHEVDILQVSDLREIFSK 322
+ + D+ D+++
Sbjct: 43 EAARLVKADLAA-DDIKDYLKG 63
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 157 bits (399), Expect = 3e-45
Identities = 47/260 (18%), Positives = 73/260 (28%), Gaps = 59/260 (22%)
Query: 1 MQEFKV-YHFVFSSSSTVYGTPK------FLPFTEDHPTG-----QGCTNPYGKSKYFVE 48
++EF H V + YGTP ++ T + T + ++ Y SK
Sbjct: 141 IKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDS 200
Query: 49 EILKDLASFKQKLQSLQSSVTQIWLNSVHRSDWHIISLRYFN-------PVGSHPSGDIG 101
+ + W L H
Sbjct: 201 HNIAFTC--------------KAW-------GIRATDLNQGVVYGVKTDETEMHEELRNR 239
Query: 102 EDPNGIPNN-LMPYISQVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDK 160
D + + L + Q AVG L V+G T R Y+ I D + A+
Sbjct: 240 LDYDAVFGTALNRFCVQAAVG--HPLTVYGKGGQT------RGYLDIRDTVQCVEIAIAN 291
Query: 161 LLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEACKK-----NIPYEVVGRREGDIASSYC 215
F+ +N T +SV E+ ++A K R E + Y
Sbjct: 292 P---AKAGEFRVFNQFTE-QFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEH-YYN 346
Query: 216 DASLAKKELAWEAKYGLDKM 235
EL E Y D +
Sbjct: 347 AKHTKLMELGLEPHYLSDSL 366
Score = 86.7 bits (215), Expect = 2e-19
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETG---------KPESLKRVEN 297
++V GG GY G T + L + Y V +VDNLV + G + + R +
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 298 LTGKTVEYHEVDILQVSDLREIFSK 322
LTGK++E + DI L E F
Sbjct: 74 LTGKSIELYVGDICDFEFLAESFKS 98
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 130 bits (330), Expect = 6e-36
Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 49/236 (20%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
E + + V++S+ + Y LP+ E YG SK E I +
Sbjct: 96 CYENNISNIVYASTISAYSDETSLPWNEKELPL--PDLMYGVSKLACEHIGN---IYS-- 148
Query: 61 LQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMP-YISQVA 119
+ I +LR+ + G N N ++ + Q
Sbjct: 149 ----------------RKKGLCIKNLRFAHLYG----------FNEKNNYMINRFFRQAF 182
Query: 120 VGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGT 179
G ++L + + R++++ D A+ + AL + +N+G+G
Sbjct: 183 HG--EQLTLHAN------SVAKREFLYAKDAAKSVIYALK------QEKVSGTFNIGSGD 228
Query: 180 GYSVFEMVKAFSEACKKNIPYEVVG-RREGDIASSYCDASLAKKELAWEAKYGLDK 234
+ +E+ + A V I SSY D+S AK+ L + Y
Sbjct: 229 ALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFAT 284
Score = 62.2 bits (152), Expect = 3e-11
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 17/73 (23%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
I VTGG G++G + V S+ G +++ + K + EY
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPIILTRSI-------GNKAIND----------YEYR 47
Query: 307 EVDILQVSDLREI 319
D + ++
Sbjct: 48 VSDYTLEDLINQL 60
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 129 bits (326), Expect = 3e-35
Identities = 40/245 (16%), Positives = 79/245 (32%), Gaps = 55/245 (22%)
Query: 9 FVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQSLQSSV 68
VF+SS V+G P P ++ YG K E +L D +
Sbjct: 136 VVFTSSIAVFGAPLPYPIPDEFH--TTPLTSYGTQKAICELLLSDYS------------- 180
Query: 69 TQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRRKKLMV 128
R + I +R G +G +N++ + VG+ L V
Sbjct: 181 --------RRGFFDGIGIRLPTICI--RPGKPNAAASGFFSNILR---EPLVGQEAVLPV 227
Query: 129 FGD--DYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEM 186
+ S V IH + V G + G +V E
Sbjct: 228 PESIRHWHASPRSAVGFLIHGAMIDVEKV-------------GPRRNLSMPGLSATVGEQ 274
Query: 187 VKAFSEACKKNIPYEVVGRREGD----IASSYC---DASLAKKELAWEAKYGLDKM---Y 236
++A + + ++ R + + + +A A +EL + A+ +++ +
Sbjct: 275 IEALRKVAGEKAV-ALIRREPNEMIMRMCEGWAPGFEAKRA-RELGFTAESSFEEIIQVH 332
Query: 237 LQRDM 241
++ ++
Sbjct: 333 IEDEL 337
Score = 63.2 bits (154), Expect = 2e-11
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 21/82 (25%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGY-------NVVVVDNLVNACRVEETGKPESLKRVENLT 299
I + G AG +G L++ G ++D + P
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF-------QPEAPAGFSG----- 64
Query: 300 GKTVEYHEVDILQVSDLREIFS 321
V+ D+ + ++
Sbjct: 65 --AVDARAADLSAPGEAEKLVE 84
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 120 bits (304), Expect = 6e-32
Identities = 47/236 (19%), Positives = 74/236 (31%), Gaps = 57/236 (24%)
Query: 1 MQEFKVYHFVFSSSSTVYG-TPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQ 59
++ V FV+ ++ YG P P DHP + Y SK E+ L
Sbjct: 124 AKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANS-SYAISKSANEDYL-------- 174
Query: 60 KLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVA 119
S ++ R N VG P + L + +++
Sbjct: 175 -----------------EYSGLDFVTFRLANVVG----------PRNVSGPLPIFFQRLS 207
Query: 120 VGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGT 179
G++ RD++ + DLA V A+D G AY+ +GT
Sbjct: 208 EGKK-----------CFVTKARRDFVFVKDLARATVRAVDG-------VGHGAYHFSSGT 249
Query: 180 GYSVFEMVKAFSEACKKNIPYEVVGR--REGDIASSYCDASLAKKELAWEAKYGLD 233
++ E+ A EA E R D S D S ++ L
Sbjct: 250 DVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLK 305
Score = 77.7 bits (192), Expect = 2e-16
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGK 301
S+ K + +TG G IGSH LLE G VV +DN TG+ E LK N
Sbjct: 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFA-------TGRREHLKDHPN---- 67
Query: 302 TVEYHEVDILQVSDLREIFSK 322
+ + E I + + ++
Sbjct: 68 -LTFVEGSIADHALVNQLIGD 87
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 113 bits (286), Expect = 3e-29
Identities = 57/240 (23%), Positives = 89/240 (37%), Gaps = 47/240 (19%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
++ KV F +++SS+ YG LP ED +PY +KY E A +
Sbjct: 140 ARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGK--PLSPYAVTKYVNEL----YADVFSR 193
Query: 61 LQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMP-YISQVA 119
+ I LRYFN G D PNG ++P + S +
Sbjct: 194 CYGFST-----------------IGLRYFNVFG--RRQD----PNGAYAAVIPKWTSSMI 230
Query: 120 VGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGT 179
G + + GD G RD+ +I + + ++ A A + YN+ G
Sbjct: 231 QG--DDVYINGD------GETSRDFCYIENTVQANLLAATA----GLDARNQVYNIAVGG 278
Query: 180 GYSVFEMVKAFSEACKKNIPYEVVGR-----REGDIASSYCDASLAKKELAWEAKYGLDK 234
S+ ++ A + +N REGD+ S D S A K L + KY +
Sbjct: 279 RTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSA 338
Score = 79.2 bits (196), Expect = 7e-17
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 238 QRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVEN 297
+ + PK L+TG AG+IGS+ + +LL+ VV +DN TG +L V +
Sbjct: 21 KELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA-------TGHQRNLDEVRS 73
Query: 298 LTGKT----VEYHEVDILQVSDLREIFSK 322
L + ++ + DI + D +
Sbjct: 74 LVSEKQWSNFKFIQGDIRNLDDCNNACAG 102
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 112 bits (282), Expect = 7e-29
Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 50/233 (21%)
Query: 3 EFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQ 62
V V S+ VYG LP ED P +PY SK +E + +
Sbjct: 108 SVGVPKVVVGSTCEVYGQADTLPTPEDSPLSP--RSPYAASKVGLEMVAGAHQ----RAS 161
Query: 63 SLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNG-IPNNLMPYISQVAVG 121
+ +R+FN G P P+ +P + +
Sbjct: 162 VAPE----------------VGIVRFFNVYG--PGER----PDALVPR----LCANLLTR 195
Query: 122 RRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGY 181
L V GD G RD+ +I D+ + V ++ L N G+G
Sbjct: 196 NE--LPVEGD------GEQRRDFTYITDVVDKLVALANRPLPS-------VVNFGSGQSL 240
Query: 182 SVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEA-KYGLD 233
SV ++++ R +I D +L +++ + G++
Sbjct: 241 SVNDVIRILQATSPAAEV-ARKQPRPNEITEFRADTALQTRQIGERSGGIGIE 292
Score = 64.5 bits (158), Expect = 5e-12
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVE 296
+QR+ + IL+TGGAG+IG H +L+ G V V+D+L +
Sbjct: 1 MQRNTLKHR-ILITGGAGFIGGHLARALVASGEEVTVLDDLR-------VPPMIPPEGTG 52
Query: 297 NLT-GKTVEYHEVDILQV 313
+E E D+ V
Sbjct: 53 KFLEKPVLELEERDLSDV 70
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 107 bits (270), Expect = 3e-27
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 51/232 (21%)
Query: 9 FVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQSLQSSV 68
F+++SS+ YG N YG SK+ +E ++ +
Sbjct: 111 FLYASSAATYGGRTSDFIESREYE--KPLNVYGYSKFLFDEYVRQIL------------- 155
Query: 69 TQIWLNSVHRSDWHIISLRYFN---PVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRRKK 125
++ I+ RYFN P E G + + + +
Sbjct: 156 --------PEANSQIVGFRYFNVYGP---------REGHKG-SMASVAFHLNTQLNNGES 197
Query: 126 LMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFE 185
+F + RD++++ D+A+ ++ L+ + G +NLGTG S
Sbjct: 198 PKLFEG-----SENFKRDFVYVGDVADVNLWFLENGVSG-------IFNLGTGRAESFQA 245
Query: 186 MVKAFSEACKKNIPYEVVG---RREGDIASSYCDASLAKKELAWEAKYGLDK 234
+ A KK + + A + D + + + + +
Sbjct: 246 VADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297
Score = 61.8 bits (151), Expect = 4e-11
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYN-VVVVDNLVNACRVEETGKPESLKRVENLTGKTVEY 305
I+VTGGAG+IGS+ V +L + G ++VVDNL + G + NL +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL-------KDG-----TKFVNLVDLNIAD 49
Query: 306 --HEVDILQVSDLREIFSK 322
+ D L E F
Sbjct: 50 YMDKEDFLIQIMAGEEFGD 68
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 104 bits (261), Expect = 5e-26
Identities = 36/240 (15%), Positives = 72/240 (30%), Gaps = 46/240 (19%)
Query: 1 MQEFKVYHFVFSSSSTVYG-TPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQ 59
++ +V V S+ V+G +G +K E + +
Sbjct: 99 AKQHRVEKVVIPSTIGVFGPETPKNKVPSITI--TRPRTMFGVTKIAAELLGQYYY---- 152
Query: 60 KLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVA 119
+ + SLRY + +P + I A
Sbjct: 153 -----------------EKFGLDVRSLRYPGIISYKA------EPTAGTTDYAVEIFYYA 189
Query: 120 VGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGT 179
V +R+K + + +++ D + V + YN+ T
Sbjct: 190 V-KREKYKCYL------APNRALPMMYMPDALKALVDLYE--ADRDKLVLRNGYNV-TAY 239
Query: 180 GYSVFEMVKAFSEACKK-NIPYEVVGRREGDIASSYC---DASLAKKELAWEAKYGLDKM 235
++ E+ E + I Y+ IA+++ D+S A E + +Y LD+
Sbjct: 240 TFTPSELYSKIKERIPEFEIEYKE--DFRDKIAATWPESLDSSEASNEWGFSIEYDLDRT 297
Score = 58.9 bits (143), Expect = 4e-10
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 247 ILVTGGAGYIGSHTVVSLLE-HGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEY 305
ILVTG +G IG+ V L E +G V+ ++V +++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV-------QRDTGG-----------IKF 43
Query: 306 HEVDILQVSDLREIFSK 322
+D+ ++ K
Sbjct: 44 ITLDVSNRDEIDRAVEK 60
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 103 bits (259), Expect = 2e-25
Identities = 42/240 (17%), Positives = 73/240 (30%), Gaps = 56/240 (23%)
Query: 9 FVFSSSSTVYGTPKFLPFTEDHPTGQGCTN----PYGKSKYFVEEILKDLASFKQKLQSL 64
V+S++ F T + PY SK F E
Sbjct: 146 VVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVY----------- 194
Query: 65 QSSVTQIWLNSVHRSDWH------IISLRYFN---PVGSHPSGDIGEDPNGIPNNLMP-Y 114
+H + R+ N P +G P + N+ P +
Sbjct: 195 ----------------YHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTF 238
Query: 115 ISQVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYN 174
I + G L + G RD+I + D+A G + G YN
Sbjct: 239 IYKALKG--MPLPLENG------GVATRDFIFVEDVANGLIACAADGTPGG------VYN 284
Query: 175 LGTGTGYSVFEMVKAFSEACKKNIPYEVVGRREGDI-ASSYCDASLAKKELAWEAKYGLD 233
+ +G S+ ++ +E N + + +R D + A++EL + A +D
Sbjct: 285 IASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSID 344
Score = 68.5 bits (168), Expect = 4e-13
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 232 LDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYN-VVVVDNLVNACRVEETGKPE 290
+ + ++N ++V GGAG++GS+ V LLE G N V VVDNL+ + +
Sbjct: 21 MPVIMNASKLANTN-VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLL-------SAEKI 72
Query: 291 SLKRVENLTGKTVEYHEVDILQVSDLREIFSK 322
++ V + E I + L + +
Sbjct: 73 NVPDHPA-----VRFSETSITDDALLASLQDE 99
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 102 bits (256), Expect = 4e-25
Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 47/240 (19%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
+ +V F +++SS+ YG LP E++ +PY +KY E A +
Sbjct: 138 AKNAQVQSFTYAASSSTYGDHPALPKVEENIGNP--LSPYAVTKYVNEI----YAQVYAR 191
Query: 61 LQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMP-YISQVA 119
++ I LRYFN G D PNG ++P + + +
Sbjct: 192 TYGFKT-----------------IGLRYFNVFG--RRQD----PNGAYAAVIPKWTAAML 228
Query: 120 VGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGT 179
G + + GD G RD+ +I ++ + ++ + K A YN+ G
Sbjct: 229 KG--DDVYINGD------GETSRDFCYIDNVIQMNILSAL----AKDSAKDNIYNVAVGD 276
Query: 180 GYSVFEMVKAFSEAC-----KKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDK 234
++ E+ + + + R GD+ S D + A L + + +
Sbjct: 277 RTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIRE 336
Score = 77.3 bits (191), Expect = 3e-16
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 238 QRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVEN 297
Q+ + +PK L+TG AG+IGS+ + LL+ V+ +DN TG +L V+
Sbjct: 19 QQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNF-------STGHQYNLDEVKT 71
Query: 298 LTGKT----VEYHEVDILQVSDLREIFSK 322
L + E DI ++ ++
Sbjct: 72 LVSTEQWSRFCFIEGDIRDLTTCEQVMKG 100
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 102 bits (256), Expect = 5e-25
Identities = 42/225 (18%), Positives = 70/225 (31%), Gaps = 48/225 (21%)
Query: 9 FVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQSLQSSV 68
+++SS+ VYG K P N YG SK ++E + S
Sbjct: 133 VIYASSAGVYGNTK-APNVVGKNES--PENVYGFSKLCMDEFVL---SHSNDNV------ 180
Query: 69 TQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMP-YISQVAVGRRKKLM 127
+ LRYFN G P E +++ K++
Sbjct: 181 --------------QVGLRYFNVYG--P----REFYKEKTASMVLQLALGAMAF--KEVK 218
Query: 128 VFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMV 187
+F G +RD+++I D+ + +V A+ G YN+G S E+V
Sbjct: 219 LFEF------GEQLRDFVYIEDVIQANVKAMKAQKSG-------VYNVGYSQARSYNEIV 265
Query: 188 KAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGL 232
E + + +L + Y L
Sbjct: 266 SILKEHLGDFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYDL 310
Score = 70.8 bits (174), Expect = 6e-14
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 236 YLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHG--YNVVVVDNLVNACRVEETGKPESLK 293
Y+ ++ N + IL+TGGAG++GS+ E+ VVV+D + +P SL
Sbjct: 3 YIDDELEN-QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTL-FSNNRPSSLG 60
Query: 294 RVENLTGKTVEYHEVDILQVSDLREIFSK 322
+NL G E DI DLR +
Sbjct: 61 HFKNLIGFKGEVIAADINNPLDLRRLEKL 89
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 100 bits (251), Expect = 2e-24
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 51/232 (21%)
Query: 9 FVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQSLQSSV 68
F+++SS+ YG N +G SK+ +E ++ +
Sbjct: 158 FLYASSAATYGGRTSDFIESREYE--KPLNVFGYSKFLFDEYVRQIL------------- 202
Query: 69 TQIWLNSVHRSDWHIISLRYFN---PVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRRKK 125
++ I+ RYFN P E G + + + +
Sbjct: 203 --------PEANSQIVGFRYFNVYGP---------REGHKG-SMASVAFHLNTQLNNGES 244
Query: 126 LMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFE 185
+F + RD++++ D+A+ ++ L+ + G +NLGTG S
Sbjct: 245 PKLFEG-----SENFKRDFVYVGDVADVNLWFLENGVSG-------IFNLGTGRAESFQA 292
Query: 186 MVKAFSEACKK-NIPYEVV--GRREGDIASSYCDASLAKKELAWEAKYGLDK 234
+ A KK I Y + A + D + + + + +
Sbjct: 293 VADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 344
Score = 63.1 bits (154), Expect = 2e-11
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 235 MYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYN-VVVVDNLVNACRVEETGKPESLK 293
+ I+VTGGAG+IGS+ V +L + G ++VVDNL G
Sbjct: 38 TGGGSGIEGRM-IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK-------DG-----T 84
Query: 294 RVENLTGKTVEY--HEVDILQVSDLREIFSK 322
+ NL + + D L E F
Sbjct: 85 KFVNLVDLNIADYMDKEDFLIQIMAGEEFGD 115
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 86.6 bits (215), Expect = 1e-19
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 40/235 (17%)
Query: 3 EFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQ 62
K+ + SS V+G T + + + YG SK E +
Sbjct: 107 AKKIKKIFWPSSIAVFGPTTPKENTPQYTIME-PSTVYGISKQAGERWCEYYH------- 158
Query: 63 SLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGR 122
+ + S+RY + S + G + I A+
Sbjct: 159 --------------NIYGVDVRSIRYPG-LISWSTPPGGGTTDYAV-----DIFYKAI-A 197
Query: 123 RKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYS 182
KK F +++ D + + + + +YNL + ++
Sbjct: 198 DKKYECFLS------SETKMPMMYMDDAIDATINIMKA--PVEKIKIHSSYNLAAMS-FT 248
Query: 183 VFEMVKAFSEACKK-NIPYEVVGR-REGDIASSYCDASLAKKELAWEAKYGLDKM 235
E+ + + I YE R + D + D S A+++ W+ + L+ M
Sbjct: 249 PTEIANEIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLESM 303
Score = 58.1 bits (141), Expect = 8e-10
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 17/81 (20%)
Query: 243 NPKFILVTGGAGYIGSHTVVSLLE-HGYNVVVVDNLVNACRVEETGKPESLKRVENLTGK 301
NPK IL+ G G IG+ L + +G V+ ++ + +
Sbjct: 2 NPK-ILIIGACGQIGTELTQKLRKLYGTENVIASDIRKL-------------NTDVV--N 45
Query: 302 TVEYHEVDILQVSDLREIFSK 322
+ + V+ L + + +
Sbjct: 46 SGPFEVVNALDFNQIEHLVEV 66
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 70.1 bits (172), Expect = 1e-13
Identities = 43/246 (17%), Positives = 73/246 (29%), Gaps = 56/246 (22%)
Query: 3 EFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNP------YGKSKYFVEEILKDLAS 56
+ F ++SS+ +Y K L T + P +G K EE+ K
Sbjct: 134 INGIKRFFYASSACIYPEFKQLETTNV-SLKESDAWPAEPQDAFGLEKLATEELCKHY-- 190
Query: 57 FKQKLQSLQSSVTQIWLNSVHRS-DWHIISLRYFNPVGSHPSGDI-GEDPNGIPNNLMPY 114
++ R+ N G P G G +
Sbjct: 191 --------------------NKDFGIECRIGRFHNIYG--PFGTWKGGREKAPAA----F 224
Query: 115 ISQVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYN 174
+ + ++GD G R + I + EG + N
Sbjct: 225 CRKAQTST-DRFEMWGD------GLQTRSFTFIDECVEGVLRLTKSDFRE-------PVN 270
Query: 175 LGTGTGYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKY---- 230
+G+ S+ EM + +K +P + EG + D +L K++L W
Sbjct: 271 IGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRN-SDNNLIKEKLGWAPNMRLKE 329
Query: 231 GLDKMY 236
GL Y
Sbjct: 330 GLRITY 335
Score = 56.6 bits (137), Expect = 3e-09
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPES----LKRVE 296
S I +TG G+I SH L G+ V+ D N E+ E L+ +E
Sbjct: 26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVME 85
Query: 297 NLTGKTVEYHEV 308
N T V
Sbjct: 86 NCLKVTEGVDHV 97
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 65.4 bits (160), Expect = 2e-12
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 17/74 (22%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTG AG +GS L + V + D + + G E+ E
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIV-------DLGAAEAH----------EEIV 47
Query: 307 EVDILQVSDLREIF 320
D+ + ++
Sbjct: 48 ACDLADAQAVHDLV 61
Score = 61.9 bits (151), Expect = 3e-11
Identities = 22/144 (15%), Positives = 42/144 (29%), Gaps = 36/144 (25%)
Query: 1 MQEFKVYHFVFSSSSTVYG-TPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQ 59
+ VF+SS+ G P+ + P + YG SK F E++
Sbjct: 97 ARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPR--RPDSLYGLSKCFGEDLASLYY---- 150
Query: 60 KLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVA 119
H+ D +++R + +D + L
Sbjct: 151 -----------------HKFDIETLNIRIGSCFPKP------KDARMMATWLSVDDFMRL 187
Query: 120 VGR------RKKLMVFGDDYDTKD 137
+ R +V+G +T+
Sbjct: 188 MKRAFVAPKLGCTVVYGASANTES 211
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 64.1 bits (157), Expect = 8e-12
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+L+TGG G++GS+ L G +++V DNL G ++L + +L E+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK------GATDNLHWLSSL--GNFEFV 55
Query: 307 EVDILQVSDLREIFSK 322
DI +D+ + +K
Sbjct: 56 HGDIRNKNDVTRLITK 71
Score = 54.9 bits (133), Expect = 1e-08
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 21/132 (15%)
Query: 117 QVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLL-GGKSQAGFKAYNL 175
++ G K + G+ G VRD +H D ++ L G A+N+
Sbjct: 218 EIKNGINKPFTISGN------GKQVRDVLHAED----MISLYFTALANVSKIRG-NAFNI 266
Query: 176 GTGTG--YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKY--- 230
G S+ E+ K + C ++ + + RE D D + W K
Sbjct: 267 GGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAK 326
Query: 231 -GLDKM---YLQ 238
G+ KM
Sbjct: 327 DGVQKMYDWTSS 338
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 63.5 bits (155), Expect = 2e-11
Identities = 36/263 (13%), Positives = 78/263 (29%), Gaps = 81/263 (30%)
Query: 2 QEFKVYHFVF-SSSSTVYGTPKFLPFTEDHP--TGQGCTNPYGKSKYFVEEILKDLASFK 58
+ +V ++ S+ + P+ LP E + + Y K+ ++E ++ A
Sbjct: 114 LQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQA--- 170
Query: 59 QKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGE-DPNGIPNNLMPYISQ 117
R+ ++ P +GE D ++ I
Sbjct: 171 -------------------RNGLPVVIGI--------PGMVLGELDIGPTTGRVITAI-- 201
Query: 118 VAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGT 177
++ + G R+ I + G + AL++ G+ Y L
Sbjct: 202 ----GNGEMTHYVA--------GQRNVIDAAEAGRGLLMALERGRIGE------RYLLT- 242
Query: 178 GTGYSVFEMVKAFSEACKKNIPY--------------EVVGRREGDI------------A 211
G + ++ + +E + P + R G +
Sbjct: 243 GHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAG 302
Query: 212 SSYCDASLAKKELAWEAKYGLDK 234
+ D A++EL + + LD
Sbjct: 303 GQFLDGRKAREELGFFSTTALDD 325
Score = 58.5 bits (142), Expect = 7e-10
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 231 GLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPE 290
G+D+ L R ++ K V G G +G H ++ G+++V+ + R
Sbjct: 1 GMDEQPLSRPGAHVK-YAVLGATGLLGHHAARAIRAAGHDLVL---IH---R-----PSS 48
Query: 291 SLKRVENLTGKTVEYHEVDILQVSDLREIFS 321
++R+ L E ++L + L
Sbjct: 49 QIQRLAYL---EPECRVAEMLDHAGLERALR 76
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 58.2 bits (141), Expect = 8e-10
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 244 PKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTV 303
K +L+ G G+IG H +LE V ++ T + L + E +
Sbjct: 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQ-------TDRLGDLVKHER-----M 71
Query: 304 EYHEVDILQVSDLRE 318
+ E DI + E
Sbjct: 72 HFFEGDITINKEWVE 86
Score = 50.2 bits (120), Expect = 4e-07
Identities = 40/250 (16%), Positives = 70/250 (28%), Gaps = 61/250 (24%)
Query: 8 HFVFSSSSTVYGTPKFLPFTEDH-PTGQGCTNP----YGKSKYFVEEILKDLASFKQKLQ 62
H VF S+S VYG F D G N Y SK ++ ++
Sbjct: 135 HLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGY-------- 186
Query: 63 SLQSSVTQIWLNSVHRSDWHIISLRYFNPVG---SHPSGDIGEDPNGIPNNLMPYISQVA 119
+ R FN +G + ++
Sbjct: 187 --------------GMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQ----FLGH-I 227
Query: 120 VGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGT 179
V R + + + GS R + ++ D + ++ A K YN+G
Sbjct: 228 V-RGENISLVDG------GSQKRAFTYVDDGISALMKIIEN---SNGVATGKIYNIGNPN 277
Query: 180 G-YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYC---------------DASLAKKE 223
+SV E+ E + Y +R + ++ +E
Sbjct: 278 NNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQE 337
Query: 224 LAWEAKYGLD 233
L W ++ D
Sbjct: 338 LGWAPQFTFD 347
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 57.8 bits (140), Expect = 1e-09
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 231 GLDKMYLQRDM-SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKP 289
G + +Y Q M + K IL+TGGAG++GSH L+ G+ V VVDN TG+
Sbjct: 13 GRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF-------TGRK 65
Query: 290 ESLKRVENLTGKTVEYHEVDI 310
+++ + E D+
Sbjct: 66 RNVEHWIGH--ENFELINHDV 84
Score = 52.4 bits (126), Expect = 6e-08
Identities = 48/234 (20%), Positives = 77/234 (32%), Gaps = 50/234 (21%)
Query: 9 FVFSSSSTVYGTPKFLPFTEDHPTGQGCTNP---YGKSKYFVEEILKDLASFKQKLQSLQ 65
+ +S+S VYG P+ P +ED+ P Y + K E + KQ
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAY--MKQ------ 187
Query: 66 SSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRRKK 125
+ + R FN G + D + N +I Q G +
Sbjct: 188 -----------EGVEVRVA--RIFNTFGPRMHMN---DGRVVSN----FILQALQG--EP 225
Query: 126 LMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFE 185
L V+G GS R + ++ DL G V ++ + NLG +++ E
Sbjct: 226 LTVYG------SGSQTRAFQYVSDLVNGLVALMNSNVSS-------PVNLGNPEEHTILE 272
Query: 186 MVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKY----GLDKM 235
+ + + + D D AK L WE GL+K
Sbjct: 273 FAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKA 326
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 57.5 bits (140), Expect = 1e-09
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEH--GYNVVVVDNLVNACRVEETGKPESLKRVENL 298
MS K I+VTGGAG+IGS+ V + + +V V+D L A G +L+ +
Sbjct: 1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA------GNKANLEAILG- 53
Query: 299 TGKTVEYHEVDILQVSDLREIFSK 322
VE DI + ++ +K
Sbjct: 54 --DRVELVVGDIADAELVDKLAAK 75
Score = 32.1 bits (74), Expect = 0.21
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 49/126 (38%)
Query: 124 KKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSV 183
K ++G+ G VRD+IH D H T + +L K + G + Y +G
Sbjct: 213 IKPKLYGE------GKNVRDWIHTND----HSTGVWAIL-TKGRMG-ETYLIG------- 253
Query: 184 FEMVKAFSEACKKNIPYEVV-------GRREGDIASSYC------------DASLAKKEL 224
A E K N EV+ G+ + + DAS + EL
Sbjct: 254 -----ADGE--KNNK--EVLELILEKMGQPKDAY--DHVTDRAGHDLRYAIDASKLRDEL 302
Query: 225 AWEAKY 230
W ++
Sbjct: 303 GWTPQF 308
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 57.3 bits (138), Expect = 1e-09
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
M +L+ GG GYIG V + + G+ V L R E + ++ +
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYV---LF---RPEVVSNIDKVQMLLYFKQ 54
Query: 301 KTVEYHEVDILQVSDLREIF 320
+ E + L +
Sbjct: 55 LGAKLIEASLDDHQRLVDAL 74
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 55.1 bits (133), Expect = 5e-09
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
M+ + +LVTG AG +G L ++ + +L + G
Sbjct: 1 MAMKR-LLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPL----------------DPAG 42
Query: 301 KTVEYHEVDILQVSDLREIFS 321
E + D+ + + + +
Sbjct: 43 PNEECVQCDLADANAVNAMVA 63
Score = 52.4 bits (126), Expect = 4e-08
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 24/94 (25%)
Query: 1 MQEFKVYHFVFSSSSTVYG-TPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQ 59
+ VF+SS+ G P+ D P YG SK F E + +
Sbjct: 98 ARAHGQPRIVFASSNHTIGYYPQTERLGPDVPA--RPDGLYGVSKCFGENLARMYF---- 151
Query: 60 KLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVG 93
+ +R +
Sbjct: 152 -----------------DKFGQETALVRIGSCTP 168
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 53.8 bits (130), Expect = 2e-08
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVV 272
+ +LVTG G++ SH V LLEHGY V
Sbjct: 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVR 39
Score = 27.6 bits (62), Expect = 5.0
Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 7/111 (6%)
Query: 127 MVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEM 186
+ G+ + Y+ +D+ H+ L Q + GT + +
Sbjct: 229 LFNGEVSPALALMPPQYYVSAVDIGLLHLGCLV-----LPQIERRRV-YGTAGTFDWNTV 282
Query: 187 VKAFSEAC-KKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKMY 236
+ F + K P + + + + K L +++
Sbjct: 283 LATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESI 333
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 52.5 bits (127), Expect = 5e-08
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 238 QRDMSNPKFILVTGGAGYIGSHTVVSLLEH--GYNVVVVDNLVNACRVEETGKPESLKRV 295
SN ILVTGGAG+IGS+ V +L+ Y ++ D L + G ++K +
Sbjct: 18 LYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYS------GNLNNVKSI 71
Query: 296 ENLTGKTVEYH--EVDILQVSDLREIFSK 322
++ Y+ + +I L + +
Sbjct: 72 QDHPN----YYFVKGEIQNGELLEHVIKE 96
Score = 29.0 bits (66), Expect = 2.2
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 53/134 (39%)
Query: 124 KKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSV 183
KKL ++GD G VRD++H+ D H +A+D +L K + G + YN+G
Sbjct: 226 KKLPLYGD------GLNVRDWLHVTD----HCSAIDVVL-HKGRVG-EVYNIG------- 266
Query: 184 FEMVKAFSEACKKNIPYEVV-------GRREGDIASSYC------------DASLAKKEL 224
+E K N+ EVV G+ + DI Y +A K E
Sbjct: 267 -----GNNE--KTNV--EVVEQIITLLGKTKKDI--EYVTDRLGHDRRYAINAEKMKNEF 315
Query: 225 AWEAKY----GLDK 234
WE KY GL +
Sbjct: 316 DWEPKYTFEQGLQE 329
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 52.6 bits (127), Expect = 6e-08
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 241 MSNP-KFILVTGGAGYIGSHTVVSLLEHGYNVV 272
M + + + VTG +G+IGS V+ LLE GY V
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVR 33
Score = 29.5 bits (67), Expect = 1.5
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 144 YIHIMDLAEGHVTALDKLLGGKSQAGFKA---YNLGTGTGYSVFEMVKAFSEAC-KKNIP 199
++H+ DL H+ + KA Y + + ++ K E + NIP
Sbjct: 228 FVHLDDLCNAHIYLFENP---------KAEGRYICSSHD-CIILDLAKMLREKYPEYNIP 277
Query: 200 YEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKMY 236
E G E S C +S +L +E KY L+ M+
Sbjct: 278 TEFKGVDEN--LKSVCFSSKKLTDLGFEFKYSLEDMF 312
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 52.2 bits (125), Expect = 6e-08
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGK-PESLKRVENLT 299
M + IL+ G GYIG H + L+ G+ ++ R E + +E+
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLL------VRESTASSNSEKAQLLESFK 54
Query: 300 GKTVEYHEVDILQVSDLREIFS 321
I + L E
Sbjct: 55 ASGANIVHGSIDDHASLVEAVK 76
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 52.2 bits (126), Expect = 7e-08
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 235 MYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVV 272
M Q + V GG G++ S V LL+ GY V
Sbjct: 1 MATQHPIGKKT-ACVVGGTGFVASLLVKLLLQKGYAVN 37
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 52.1 bits (126), Expect = 8e-08
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHG-YNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEY 305
IL+TGGAG+IGS V ++++ VV +D L A G ESL + Y
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA------GNLESLSDISESNR----Y 52
Query: 306 H--EVDILQVSDLREIFSK 322
+ DI +++ IF +
Sbjct: 53 NFEHADICDSAEITRIFEQ 71
Score = 27.9 bits (63), Expect = 5.2
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 56/139 (40%)
Query: 124 KKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSV 183
K L ++G G +RD++++ D H AL ++ + +AG + YN+G
Sbjct: 219 KPLPIYGK------GDQIRDWLYVED----HARALHMVV-TEGKAG-ETYNIG------- 259
Query: 184 FEMVKAFSEACKKNIPYEVV-------GRREGDIASS----------------YC-DASL 219
+E KKN+ +VV S Y DA
Sbjct: 260 -----GHNE--KKNL--DVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGK 310
Query: 220 AKKELAWEAKY----GLDK 234
+EL W+ G+ K
Sbjct: 311 ISRELGWKPLETFESGIRK 329
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 51.7 bits (125), Expect = 1e-07
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEH--GYNVVVVDNLVNACRVEETGKPESLKRVENL 298
M + K +LVTGG G+IGS+ + +LE + V+ +D L P +LK +E+
Sbjct: 1 MHSMK-LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG------SNPANLKDLED- 52
Query: 299 TGKTVEYHEVDILQVSDLREIFSK 322
+ + D+ ++E+ K
Sbjct: 53 -DPRYTFVKGDVADYELVKELVRK 75
Score = 31.3 bits (72), Expect = 0.42
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 53/134 (39%)
Query: 124 KKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSV 183
K+ ++G G VRD++++ D HV A++ +L K ++ + YN+
Sbjct: 203 LKIPIYGT------GKNVRDWLYVED----HVRAIELVLL-KGESR-EIYNIS------- 243
Query: 184 FEMVKAFSEACKKNIPYEVV-------GRREGDIASSYC------------DASLAKKEL 224
A E K N+ EVV G+ E I D+ ++L
Sbjct: 244 -----AGEE--KTNL--EVVKIILRLMGKGEELI--ELVEDRPGHDLRYSLDSWKITRDL 292
Query: 225 AWEAKY----GLDK 234
W KY G+ K
Sbjct: 293 KWRPKYTFDEGIKK 306
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 51.1 bits (123), Expect = 2e-07
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVV 272
+ VTGG G++GS + SLLE+GY+V
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVN 29
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 50.7 bits (121), Expect = 2e-07
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVV-VDNLVNACRVEE 285
I++TG G++G + L + + V +E
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELES 42
Score = 48.4 bits (115), Expect = 1e-06
Identities = 22/225 (9%), Positives = 52/225 (23%), Gaps = 63/225 (28%)
Query: 3 EFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQ 62
+ SSS NPYG+SK E++L++ A
Sbjct: 82 RNTKKPAILLSSSIQATQ----------------DNPYGESKLQGEQLLREYA------- 118
Query: 63 SLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGR 122
+ R+ N G + +
Sbjct: 119 --------------EEYGNTVYIYRWPNLFGKWCKPNYNS----------------VIAT 148
Query: 123 RKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYS 182
+ ++ D + ++ D+ + + G + +
Sbjct: 149 FCYKIARNEEIQVNDRNVELTLNYVDDIVAEIK----RAIEGTPTIENGVPTVPNVFKVT 204
Query: 183 VFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWE 227
+ E+V + + + + + L L++
Sbjct: 205 LGEIVDLLYKFKQSRLDRTLPKLDNLF------EKDLYSTYLSYL 243
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 50.6 bits (121), Expect = 2e-07
Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 8/110 (7%)
Query: 130 GDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG--YSVFEMV 187
++ +R + H+++ G++ KL ++ + +N G V +V
Sbjct: 218 SQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYA-EGWNFGPNDADATPVKNIV 276
Query: 188 KAFSEACKKNIPYEVVGRR---EGDIASSYCDASLAKKELAWEAKYGLDK 234
+ + + +++ G E D S AK +L W ++ L+
Sbjct: 277 EQMVKYWGEGASWQLDGNAHPHEAHYLKL--DCSKAKMQLGWHPRWNLNT 324
Score = 30.2 bits (68), Expect = 0.79
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 14/87 (16%)
Query: 241 MSNPKF-----ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRV 295
M N F + VTG G+ G + L G V P SL
Sbjct: 1 MINNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSL-------TAPTVP-SLFET 52
Query: 296 ENLTGKTVEYHEVDILQVSDLREIFSK 322
+ ++ DI + L E +
Sbjct: 53 ARV-ADGMQSEIGDIRDQNKLLESIRE 78
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 49.7 bits (119), Expect = 5e-07
Identities = 38/253 (15%), Positives = 69/253 (27%), Gaps = 66/253 (26%)
Query: 8 HFVFSSSSTVYGTPKFLPFTEDH------PTGQ--GCTNPYGKSKYFVEEILKDLASFKQ 59
+F S+S VYG F EDH P + Y SK ++ ++ A ++
Sbjct: 111 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWI---YSVSKQLLDRVI--WAYGEK 165
Query: 60 KLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVG---SHPSGDIGEDPNGIPNNLMPYIS 116
+ + R FN +G + + I I
Sbjct: 166 -----------------EGLQFTLF--RPFNWMGPRLDNLNAARIGSSRAITQ----LIL 202
Query: 117 QVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLG 176
V + + G R + I D E ++ ++ + N+G
Sbjct: 203 N-LV-EGSPIKLIDG------GKQKRCFTDIRDGIEALYRIIE---NAGNRCDGEIINIG 251
Query: 177 TGTG-YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYC---------------DASLA 220
S+ E+ + + +K+ G A
Sbjct: 252 NPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNA 311
Query: 221 KKELAWEAKYGLD 233
+ L WE K +
Sbjct: 312 HRCLDWEPKIDMQ 324
Score = 49.7 bits (119), Expect = 5e-07
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHG-YNVVVVDNL 277
+L+ G G+IG+H LL Y V +D
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIG 34
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 49.3 bits (117), Expect = 6e-07
Identities = 39/260 (15%), Positives = 65/260 (25%), Gaps = 44/260 (16%)
Query: 1 MQEFKVYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQK 60
K Y F S P+TED P Y Y +E+I+ +
Sbjct: 118 QTGRKHYMGPFES--YGKIESHDPPYTEDLP-----RLKYMNFYYDLEDIMLEEVE---- 166
Query: 61 LQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAV 120
+ R N G P NL+ + A
Sbjct: 167 ----------------KKEGLTWSVHRPGNIFGFSP---------YSMMNLVGTLCVYAA 201
Query: 121 GRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
+ + V G D +AE H+ A A +A+N+ G
Sbjct: 202 ICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAV-----DPYAKNEAFNVSNGDV 256
Query: 181 YSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKMYLQRD 240
+ K +E G + ++ + GL L+
Sbjct: 257 FKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEE---IVRENGLTPTKLKDV 313
Query: 241 MSNPKFILVTGGAGYIGSHT 260
++ G ++ S
Sbjct: 314 GIWWFGDVILGNECFLDSMN 333
Score = 36.2 bits (83), Expect = 0.010
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 10/74 (13%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
L+ G G IG+ L + R E + Y +
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWK-VYGVARRTRPAWHEDNP---------INYVQ 54
Query: 308 VDILQVSDLREIFS 321
DI D + S
Sbjct: 55 CDISDPDDSQAKLS 68
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 49.0 bits (118), Expect = 6e-07
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHG------YNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
+LVTGGAG+IGSH V LL V+V+D+L A G +L V+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA------GNRANLAPVDADPR 56
Query: 301 KTVEYHEVDILQVSDLREIFSK 322
DI L
Sbjct: 57 LRFV--HGDIRDAGLLARELRG 76
Score = 33.6 bits (78), Expect = 0.074
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 124 KKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSV 183
L ++GD G+ VR+++H D H + +L +AG + Y++G G +
Sbjct: 203 GTLPLYGD------GANVREWVHTDD----HCRGIALVL-AGGRAG-EIYHIGGGLELTN 250
Query: 184 FEMVKAFSEACKKN---IPYEVVGRREG-DIASSYC-DASLAKKELAWEAKYGLD 233
E+ ++ + + V R+G D+ Y D ++EL + +
Sbjct: 251 RELTGILLDSLGADWSSVRK--VADRKGHDL--RYSLDGGKIERELGYRPQVSFA 301
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 47.4 bits (113), Expect = 1e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
M K I++ G +G++GS + L G+ V V
Sbjct: 1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAV 34
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 47.6 bits (113), Expect = 2e-06
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLT 299
++ + +VTGG IG L +G VV+ CR G E++++++N
Sbjct: 8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVL------TCRDVTKGH-EAVEKLKNSN 60
Query: 300 GKTVEYHEVDI 310
+ V +H++D+
Sbjct: 61 HENVVFHQLDV 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 3e-06
Identities = 59/293 (20%), Positives = 100/293 (34%), Gaps = 95/293 (32%)
Query: 33 GQGCTNPYGKSKYFVEEILKDL-ASFKQKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNP 91
GQG T+ Y EE L+DL ++ + L + L+ + R+ +
Sbjct: 162 GQGNTDDY------FEE-LRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKV----- 208
Query: 92 VGSHPSG-DIG---EDPNGIPNNLMPYISQVAVGRRKKLMVFGDDYDTKDGSGVRDYIHI 147
G +I E+P+ P+ Y+ + + S I +
Sbjct: 209 ---FTQGLNILEWLENPSNTPDK--DYLLSIPI------------------SCP--LIGV 243
Query: 148 MDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYS-------VFEMVK---AFSEACKKN 197
+ LA VTA KLL G + ++Y G TG+S +F + +K
Sbjct: 244 IQLAHYVVTA--KLL-GFTPGELRSYLKGA-TGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 198 IPYEV---VGRR------EGDIASSYCDASLAKKE------LAWEAKYGLDKMYLQRDMS 242
I V +G R + S + SL E L+ L + +Q
Sbjct: 300 I--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS---NLTQEQVQ---- 350
Query: 243 NPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRV 295
++ T G +SL+ +G +VV +G P+SL +
Sbjct: 351 --DYVNKTNSHLPAGKQVEISLV-NGAKNLVV-----------SGPPQSLYGL 389
Score = 37.3 bits (86), Expect = 0.007
Identities = 36/172 (20%), Positives = 52/172 (30%), Gaps = 72/172 (41%)
Query: 52 KDLASFKQKLQSL--QSSVTQIWLNSVHRSDWHI-ISLRYFNPVGS--H-----PSGD-I 100
+ L L+ S + Q + + S+ + S R F PV S H P+ D I
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQ---SRIPFSERKLKFSNR-FLPVASPFHSHLLVPASDLI 439
Query: 101 GED--PNGI---PNNLMPYISQVAVGRRKKLMVFGDDYDTKDGSGVRDY----------- 144
+D N + ++ Q+ V YDT DGS +R
Sbjct: 440 NKDLVKNNVSFNAKDI-----QIPV------------YDTFDGSDLRVLSGSISERIVDC 482
Query: 145 I----------------HIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTG 180
I HI+D G + L L GTG
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD--------GTGVR 526
Score = 34.3 bits (78), Expect = 0.060
Identities = 55/328 (16%), Positives = 87/328 (26%), Gaps = 115/328 (35%)
Query: 8 HFV----FSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQS 63
HF FS V P L G+ Y + E I+
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF--ETIV------------ 1697
Query: 64 LQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRR 123
D + + + F + H + G+ + +Q A
Sbjct: 1698 ----------------DGKLKTEKIFKEINEHSTSYTFRSEKGLLS--ATQFTQPA---- 1735
Query: 124 KKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYS- 182
L + DL + D G S LG Y+
Sbjct: 1736 --LTLME-------------KAAFEDLKSKGLIPADATFAGHS--------LGE---YAA 1769
Query: 183 ------VFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKMY 236
V + VV R G ++ + EL + YG M
Sbjct: 1770 LASLADVMS----IESLVE------VVFYR-G----MTMQVAVPRDELG-RSNYG---MI 1810
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLL--EHGYNVVVV-DNL-----VNACRVEETGK 288
NP + + + VV + G+ V +V N+ V A G
Sbjct: 1811 ----AINPGRVAASFSQEAL--QYVVERVGKRTGWLVEIVNYNVENQQYVAA------GD 1858
Query: 289 PESLKRVENLTGKTVEYHEVDI--LQVS 314
+L V N+ ++ ++DI LQ S
Sbjct: 1859 LRALDTVTNVL-NFIKLQKIDIIELQKS 1885
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 47.0 bits (111), Expect = 4e-06
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGK 301
S +L+ G G+IG + L+ ++ R P K + L K
Sbjct: 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYIL------AR-PGPRSPSKAKIFKALEDK 60
Query: 302 TVEYHEVDILQVSDLREIF 320
I + + +I
Sbjct: 61 GAIIVYGLINEQEAMEKIL 79
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 45.3 bits (108), Expect = 1e-05
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 173 YNLGTGTGYSVFEMVK-AFSEACKKNIPYEVVG----RREGDIASSYCDASLAKKELAWE 227
YN+ +G G + +++ + A N+ + R ++ + K W+
Sbjct: 246 YNVCSGIGTRIQDVLDLLLAMA---NVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWK 302
Query: 228 AKYGLDKMYLQRDM 241
+ L+K ++
Sbjct: 303 PRIPLEK--SLFEI 314
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 44.5 bits (105), Expect = 2e-05
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
I++ GG GYIG V + L + + + P S++ E V
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTP-----DSTPSSVQLREEFRSMGVTII 61
Query: 307 EVDILQVSDLREIFS 321
E ++ + + +
Sbjct: 62 EGEMEEHEKMVSVLK 76
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 43.3 bits (102), Expect = 4e-05
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLK--RVENLTGKTVE 304
IL+ G G IG H V + ++ G + R T K ++N V
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYAL------VRKTITAANPETKEELIDNYQSLGVI 58
Query: 305 YHEVDILQVSDLREIF 320
E DI L +
Sbjct: 59 LLEGDINDHETLVKAI 74
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 42.7 bits (100), Expect = 5e-05
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
I V G G GS V G+ V+ V
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAV 30
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 42.7 bits (100), Expect = 6e-05
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
I + G G GS + G+ V +
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAI 30
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLK-------RVEN 297
K ILV GG+G +G+ V +N + +D E S +++
Sbjct: 23 KNILVLGGSGALGAEVVKFFKSKSWNTISID------FRENPNADHSFTIKDSGEEEIKS 76
Query: 298 LTGKTVE-YHEVDIL 311
+ K +VD
Sbjct: 77 VIEKINSKSIKVDTF 91
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 42.2 bits (99), Expect = 1e-04
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
IL+ GG GYIG+H V L+ G+ V R ++
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYV---FT---RPN----SSKTTLLDEFQSLGAIIV 63
Query: 307 EVDILQVSDLREIF 320
+ ++ + L E+
Sbjct: 64 KGELDEHEKLVELM 77
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 41.9 bits (99), Expect = 1e-04
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+ +L+TG IG T + +V+ D +N +EET + + L G V
Sbjct: 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWD--INKHGLEET-----AAKCKGL-GAKVH 83
Query: 305 YHEVDILQVSDLREIFS 321
VD S+ +I+S
Sbjct: 84 TFVVD---CSNREDIYS 97
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 41.5 bits (98), Expect = 2e-04
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 231 GLDKMYLQRDMSN--PKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET-- 286
G + +Y Q MS K +VTG +G V+L GY V + ++ET
Sbjct: 14 GTENLYFQ-SMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAG--RRLDALQETAA 70
Query: 287 -------------GKPESLKRVENLTGKTVE-YHEVDIL 311
P+S V L TVE + VD+L
Sbjct: 71 EIGDDALCVPTDVTDPDS---VRALFTATVEKFGRVDVL 106
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 41.4 bits (98), Expect = 2e-04
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+ +VTG + +G+ L + G V+ +D + + + G V
Sbjct: 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLD--LKP---------PAGEEPAAELGAAVR 56
Query: 305 YHEVDILQVSDLREIFSK 322
+ D+ +D +
Sbjct: 57 FRNADVTNEADATAALAF 74
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 41.5 bits (98), Expect = 2e-04
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 231 GLDKMYLQRDMSNPKF------ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVE 284
G + +Y Q M+ K LVTGG +G +L GY+VV+ ++
Sbjct: 14 GTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITG--RRPDVLD 71
Query: 285 ETGKPESLKRVENLTGKTVEYHEVDILQVSD 315
+ TG V D V D
Sbjct: 72 AA-----AGEIGGRTGNIVRAVVCD---VGD 94
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 41.2 bits (97), Expect = 2e-04
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 241 MSNP---KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
M+ + +LV GG G +GS V + + V +D
Sbjct: 1 MAASGEARRVLVYGGRGALGSRCVQAFRARNWWVASID 38
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 40.8 bits (96), Expect = 3e-04
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHG-YNVVVVDNLVNACRVEETGKPESLKRVENLT 299
M + K ++V GG G G +LLE G + V VV T P K + L
Sbjct: 2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVV-----------TRNPRK-KAAKELR 49
Query: 300 GKTVEYHEVDILQVSDLREIFS 321
+ E + D + +
Sbjct: 50 LQGAEVVQGDQDDQVIMELALN 71
Score = 27.0 bits (60), Expect = 8.5
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 6 VYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDL 54
+++ V+S L + G+ + K VEE +D+
Sbjct: 107 LHYVVYSG----------LENIKKLTAGR-LAAAHFDGKGEVEEYFRDI 144
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 40.0 bits (94), Expect = 4e-04
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
I + G G G T+ ++ GY V V LV R R+ + +
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTV---LV---R--------DSSRLPSEGPRPAHVV 51
Query: 307 EVDILQVSDLREIF 320
D+LQ +D+ +
Sbjct: 52 VGDVLQAADVDKTV 65
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 40.3 bits (95), Expect = 4e-04
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 236 YLQRDMSNP-----KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPE 290
LQ+ M P K +TGG +G L G V+ ++ T
Sbjct: 13 PLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASR--KMDVLKAT---- 66
Query: 291 SLKRVENLTGKTVEYHEVDILQVSDLREIFSK 322
+++ + TG V + D+ ++ S+
Sbjct: 67 -AEQISSQTGNKVHAIQCDVRDPDMVQNTVSE 97
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 40.2 bits (95), Expect = 5e-04
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 231 GLDKMYLQRDMS-NPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
G + +Y Q M+ + IL+TG + +G H + LLEHG+ V++
Sbjct: 13 GRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYR 59
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 40.2 bits (94), Expect = 5e-04
Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 13/79 (16%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGK 301
+N +LVTG +G G L E V V E + G
Sbjct: 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAK------GLVRSAQGKEKI-------GG 48
Query: 302 TVEYHEVDILQVSDLREIF 320
+ DI + F
Sbjct: 49 EADVFIGDITDADSINPAF 67
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 39.9 bits (94), Expect = 5e-04
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K +TGG IG + HG + V+ + RV +++ TG+
Sbjct: 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASR--SLPRVLTA-----ARKLAGATGRRCL 80
Query: 305 YHEVDILQVSDLREIFSK 322
+D+ + +
Sbjct: 81 PLSMDVRAPPAVMAAVDQ 98
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 39.6 bits (93), Expect = 5e-04
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
+LV G G + + + L G+ V +
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAM 51
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 39.6 bits (93), Expect = 7e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
++V GG G +GS + ++GY V+ +D
Sbjct: 4 GKVIVYGGKGALGSAILEFFKKNGYTVLNID 34
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 39.6 bits (93), Expect = 7e-04
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
++TG IG +L + G N+V+ V L+ TV +H
Sbjct: 29 VITGSTSGIGLAIARTLAKAGANIVLNG------FGAPDEIRTVTDEVAGLSSGTVLHHP 82
Query: 308 VDILQVSDLREIFSK 322
D+ + S++ ++ +
Sbjct: 83 ADMTKPSEIADMMAM 97
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 39.2 bits (92), Expect = 9e-04
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
++TGGA +G T L+ G + V++D + + G
Sbjct: 13 LVAVITGGASGLGLATAERLVGQGASAVLLD--LPN---------SGGEAQAKKLGNNCV 61
Query: 305 YHEVDILQVSDLREIFSK 322
+ D+ D++ +
Sbjct: 62 FAPADVTSEKDVQTALAL 79
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 39.2 bits (92), Expect = 0.001
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K ++ G IG T L++ V+ + RVE LK + +
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILD-----RVENPTALAELKAINP--KVNIT 58
Query: 305 YHEVDI-LQVSDLREIFSK 322
+H D+ + V++ +++ K
Sbjct: 59 FHTYDVTVPVAESKKLLKK 77
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 39.4 bits (92), Expect = 0.001
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 241 MSNP-KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLT 299
M+ K I V G G G+ + G++V + L E
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQ-----------VHSLKGLIAEELQA 49
Query: 300 GKTVEYHEVDIL-QVSDLREIFS 321
V + +L V + +F
Sbjct: 50 IPNVTLFQGPLLNNVPLMDTLFE 72
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 39.0 bits (91), Expect = 0.001
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 16/95 (16%)
Query: 227 EAKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
G + +Y Q M N +L+ G G I H + L + + R
Sbjct: 9 HHSSGRENLYFQGHMKN---VLILGAGGQIARHVINQLADKQTIKQTL--FA---R---- 56
Query: 287 GKPESLKRVENLTGKTVEYHEVDILQVSDLREIFS 321
++ + D+L + L++
Sbjct: 57 ----QPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ 87
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 38.8 bits (91), Expect = 0.001
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K +VTG IG +L G ++V+ + + + G V
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNG------FGDAAEIEKVRAGLAAQHGVKVL 58
Query: 305 YHEVDILQVSDLREIFSK 322
Y D+ + +R +
Sbjct: 59 YDGADLSKGEAVRGLVDN 76
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 38.4 bits (90), Expect = 0.001
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 15/74 (20%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
I + G G +G + SL Y + R K E + + N+
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAG------AR-----KVEQVPQYNNVKAVHF--- 48
Query: 307 EVDILQVSDLREIF 320
++ +
Sbjct: 49 -DVDWTPEEMAKQL 61
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 38.8 bits (91), Expect = 0.001
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 234 KMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLK 293
+ YL + + +VTGGA IG V LLE G NVV+ R++ E
Sbjct: 8 RSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASR--KLERLKSAAD-ELQA 64
Query: 294 RVENLTGKTVEYHEVDI 310
+ V + +I
Sbjct: 65 NLPPTKQARVIPIQCNI 81
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 39.3 bits (92), Expect = 0.001
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
+ +TG G +G L G+ V+ +
Sbjct: 150 VAITGSRGLVGRALTAQLQTGGHEVIQL 177
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 38.7 bits (91), Expect = 0.001
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 234 KMYLQR-DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR-----VEETG 287
MY+++ + N + +VTGGA IG V +L E G V++ D + G
Sbjct: 3 HMYMEKLRLDN-RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG 61
Query: 288 -----------KPESLKRVENLTGKTVEYH-EVDIL 311
ES V+N E VDIL
Sbjct: 62 HDVSSVVMDVTNTES---VQNAVRSVHEQEGRVDIL 94
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 38.7 bits (91), Expect = 0.001
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
LVTG A IG +LL G V +VD E G E + + +
Sbjct: 11 LVTGAAQGIGRAFAEALLLKGAKVALVD------WNLEAGVQCKAALHEQFEPQKTLFIQ 64
Query: 308 VDILQVSDLREIFSK 322
D+ LR+ F K
Sbjct: 65 CDVADQQQLRDTFRK 79
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 36.3 bits (84), Expect = 0.002
Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 16/77 (20%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHG-YNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEY 305
I V G AG IG L Y+V V D+ L + L V
Sbjct: 8 ICVVG-AGKIGQMIAALLKTSSNYSVTVADH--------------DLAALAVLNRMGVAT 52
Query: 306 HEVDILQVSDLREIFSK 322
+VD + L +
Sbjct: 53 KQVDAKDEAGLAKALGG 69
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 37.9 bits (89), Expect = 0.003
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET--------GKPESLKRVE 296
K +VTGG+ IG V +L+ +G VV V ++ E V+
Sbjct: 15 KVAIVTGGSSGIGLAVVDALVRYGAKVVSVS--LDEKSDVNVSDHFKIDVTNEEE---VK 69
Query: 297 NLTGKTVE-YHEVDIL 311
KT + Y +DIL
Sbjct: 70 EAVEKTTKKYGRIDIL 85
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 37.9 bits (89), Expect = 0.003
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETGKPESLK-------RV 295
+ ++VTGG IG + LE G V +D +E +
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTL 62
Query: 296 ENLTGKTVE-YHEVDIL 311
+ +E +D+L
Sbjct: 63 KKFVEYAMEKLQRIDVL 79
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 37.8 bits (88), Expect = 0.003
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+ VTGGA +G V LL G V + D + +++ +L+ +G V
Sbjct: 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIAD--IRQDSIDKAL--ATLEAEG--SGPEVM 62
Query: 305 YHEVDILQVSD 315
++D V+
Sbjct: 63 GVQLD---VAS 70
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 37.2 bits (87), Expect = 0.004
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+ LVTGGA +G ++L GY VVV+D
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLD 33
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 37.3 bits (87), Expect = 0.004
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
I+++G A IG+ T L G+ +V +D
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGID 32
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 37.1 bits (87), Expect = 0.004
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 10/73 (13%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
VTG IG + G ++++D A ++ + L
Sbjct: 15 AVTGAGSGIGLEICRAFAASGARLILID--REAAALDRA--------AQELGAAVAARIV 64
Query: 308 VDILQVSDLREIF 320
D+ +
Sbjct: 65 ADVTDAEAMTAAA 77
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 37.3 bits (87), Expect = 0.004
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+V+GGAG +G TV L G VV+ D + A E K + + G E
Sbjct: 31 ASAIVSGGAGGLGEATVRRLHADGLGVVIAD--LAA---------EKGKALADELGNRAE 79
Query: 305 YHEVDI 310
+ ++
Sbjct: 80 FVSTNV 85
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 36.9 bits (85), Expect = 0.004
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 247 ILVTGGAGYIGSHTVVSLLEH-GYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEY 305
I + G AG I +LL + ++ + R + ++ E + + V
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLY------GR-----QLKTRIPPEIIDHERVTV 56
Query: 306 HEVDILQVSDLREIFS 321
E L + +
Sbjct: 57 IEGSFQNPGXLEQAVT 72
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 37.2 bits (87), Expect = 0.005
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 231 GLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPE 290
G M ++ +VTGGA +G T LL+ G VVV+D +
Sbjct: 1 GPGSMEIRD-----AVAVVTGGASGLGLATTKRLLDAGAQVVVLD--IRG---------- 43
Query: 291 SLKRVENLTGKTVEYHEVDILQVSDLREIFSK 322
+ V G + D+ + +
Sbjct: 44 --EDVVADLGDRARFAAADVTDEAAVASALDL 73
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 37.2 bits (87), Expect = 0.005
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K VTG +G IG + + G +V + N A E + ++ G +
Sbjct: 35 KVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPAD--------EKAEHLQKTYGVHSK 86
Query: 305 YHEVDILQVSDLREIFSK 322
++ +I + E S+
Sbjct: 87 AYKCNISDPKSVEETISQ 104
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 36.8 bits (86), Expect = 0.005
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 223 ELAWEAKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR 282
+L E Y M Q+ K +++TG + IG+ V + + Y VV +
Sbjct: 12 DLGTENLYFQSMMRNQQ-----KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA 66
Query: 283 VEET-------GKPESLKRVENLTGKTVEYH-EVDIL 311
+ KPE+ + + + +E +D L
Sbjct: 67 DPDIHTVAGDISKPET---ADRIVREGIERFGRIDSL 100
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 36.8 bits (86), Expect = 0.005
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 233 DKMYLQRDMS-NPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPES 291
M +S K I+VTGG IG ++ G NV V+ E
Sbjct: 2 SHMAPGFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYR-------SAADAVEV 54
Query: 292 LKRVENLTGKTVEYHEVDILQVSDLREIFSK 322
++V G + ++ D+ + + +
Sbjct: 55 TEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQ 85
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 36.7 bits (86), Expect = 0.006
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 21/95 (22%)
Query: 235 MYLQRDMS-NPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR-----VEETG- 287
M+ ++ + K ++TG IG ++ G +VVV D +A +++ G
Sbjct: 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG 60
Query: 288 ----------KPESLKRVENLTGKTVE-YHEVDIL 311
+ + L + +VDIL
Sbjct: 61 QAFACRCDITSEQE---LSALADFAISKLGKVDIL 92
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 36.7 bits (86), Expect = 0.006
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET-----GKPESLK------ 293
K ILVTG A IG + G ++V VD + E + ++
Sbjct: 7 KTILVTGAASGIGRAALDLFAREGASLVAVD--REERLLAEAVAALEAEAIAVVADVSDP 64
Query: 294 -RVENLTGKTVEYH-EVDIL 311
VE + + +E + +
Sbjct: 65 KAVEAVFAEALEEFGRLHGV 84
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 36.8 bits (86), Expect = 0.006
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
+VTGGA IG L G+++ V D + ET +K +E + +
Sbjct: 6 MVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAET-----IKLIEAA-DQKAVFVG 59
Query: 308 VDILQVSDLREIF 320
+D V+D
Sbjct: 60 LD---VTDKANFD 69
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 36.4 bits (85), Expect = 0.007
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETGKPESLK-------RV 295
K ++VTGG IG+ V + + G VV+ D + R +E + V
Sbjct: 10 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDV 69
Query: 296 ENLTGKTVE-YHEVDIL 311
+ L +T+ + +D +
Sbjct: 70 KTLVSETIRRFGRLDCV 86
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 36.3 bits (85), Expect = 0.008
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 8/75 (10%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLK-------RVEN 297
K +LVTGGA IG + G V + D V E +
Sbjct: 7 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVR 66
Query: 298 LTGKTVE-YHEVDIL 311
+ VD+L
Sbjct: 67 FVEEAAYALGRVDVL 81
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 36.5 bits (85), Expect = 0.008
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K ILVTG + IG V L + VV + LK+++ G
Sbjct: 3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSE---------APLKKLKEKYGDRFF 53
Query: 305 YHEVDILQVSDLREIFSK 322
Y DI + S L+++ +
Sbjct: 54 YVVGDITEDSVLKQLVNA 71
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 36.3 bits (85), Expect = 0.008
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 241 MSNP-----KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRV 295
M+ K LVTG A +G L G V++ D + A + E+ + +
Sbjct: 1 MTALFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILND--IRATLLAES-----VDTL 53
Query: 296 ENLTGKTVEYHEVDILQVSDLREIFSK 322
G D+ + FSK
Sbjct: 54 TRK-GYDAHGVAFDVTDELAIEAAFSK 79
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 36.4 bits (85), Expect = 0.008
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 20/84 (23%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNAC-----RVEETG-----------K 288
K L+TG + IG ++ E G V V +A + G +
Sbjct: 33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ 92
Query: 289 PESLKRVENLTGKTVEYH-EVDIL 311
P+ V + + +DI
Sbjct: 93 PDQ---VRGMLDQMTGELGGIDIA 113
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 36.4 bits (85), Expect = 0.008
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLK----------R 294
LVTGG+ IG V LL++ + V+ ++++ E+LK
Sbjct: 5 ANYLVTGGSKGIGKAVVELLLQNKNHTVI------NIDIQQSFSAENLKFIKADLTKQQD 58
Query: 295 VENLTGKTVEYHEVDIL 311
+ N+ ++ D +
Sbjct: 59 ITNVL-DIIKNVSFDGI 74
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 36.4 bits (85), Expect = 0.008
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESL-----KRVENLT 299
K + VTG IG T ++ +E G V D + + E + +V +
Sbjct: 8 KNVWVTGAGKGIGYATALAFVEAGAKVTGFDQ--AFTQEQYPFATEVMDVADAAQVAQVC 65
Query: 300 GKTVEYH-EVDIL 311
+ + +D L
Sbjct: 66 QRLLAETERLDAL 78
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 36.3 bits (85), Expect = 0.008
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+ +LVTG IG TV +L G VV V ++ + +E
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVS--RTQADLDSLVR----------ECPGIE 55
Query: 305 YHEVDILQVSDLREIFSK 322
VD+
Sbjct: 56 PVCVDLGDWEATERALGS 73
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 36.4 bits (85), Expect = 0.008
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K LVTG IG L G N+V+ G P G
Sbjct: 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNG----------FGDPAPALAEIARHGVKAV 54
Query: 305 YHEVDILQVSDLREIFSK 322
+H D+ V+ + +F+
Sbjct: 55 HHPADLSDVAQIEALFAL 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.009
Identities = 46/307 (14%), Positives = 97/307 (31%), Gaps = 89/307 (28%)
Query: 36 CTNPYGKSKYFVEEILKDLASFKQKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSH 95
+ + FVEE+L+ ++K +L I P S
Sbjct: 72 LSKQEEMVQKFVEEVLRI--NYK-------------FL-------MSPIKTEQRQP--SM 107
Query: 96 PSGDIGEDPNGIPNNLMPYISQVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHV 155
+ E + + N+ + ++ V R + + +R
Sbjct: 108 MTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLK------------LR------------- 141
Query: 156 TALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEACKKNIPYEVVGRREGDI---AS 212
AL +L + + G+G + + + C Y+V + + I
Sbjct: 142 QALLEL---RPAKNVLIDGVL-GSGKTW--VA---LDVCLS---YKVQCKMDFKIFWLNL 189
Query: 213 SYCDASLAKKELAWEAKYGLDKMYLQRD--MSNPKFILVTGGAGYIGSHTVVSLLEHGYN 270
C++ E+ + Y +D + R SN K + + I + L Y
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-----IQAELRRLLKSKPYE 244
Query: 271 --VVVVDN-----LVNA----CRVEETGKPESLKRVENLTGKTVEY----HEVDILQVSD 315
++V+ N NA C++ T + + + + L+ T + H L +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDE 302
Query: 316 LREIFSK 322
++ + K
Sbjct: 303 VKSLLLK 309
Score = 30.6 bits (68), Expect = 0.75
Identities = 44/279 (15%), Positives = 77/279 (27%), Gaps = 83/279 (29%)
Query: 7 YHFVFSSSSTVYGTP--KFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQSL 64
Y F+ S T P + E + +KY V L+ +Q L L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVS-RLQPYLKLRQALLEL 147
Query: 65 QSS--VT--------QIWL-NSVHRSD-----------WHIISLRYFNPVGSHPSGDIGE 102
+ + V + W+ V S W ++L+ N
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--LNLKNCN------------ 193
Query: 103 DPNGIPNNLMPYISQVAVGRRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLL 162
P + L + Q ++ ++ + I + L +LL
Sbjct: 194 SPETVLEMLQKLLYQ-----------IDPNWTSRSDHSSNIKLRIHSIQA----ELRRLL 238
Query: 163 GGKSQAGFKAYNLGTGTGYSVF------EMVKAFSEACK-------KNIPYEVVGRREGD 209
K Y V + AF+ +CK K + +
Sbjct: 239 KSKP------YE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 210 IASSYCDASLAKKE-LAWEAKY-GLDKMYLQRDMS--NP 244
I+ + +L E + KY L R++ NP
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Score = 29.4 bits (65), Expect = 2.0
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 23/96 (23%)
Query: 184 FEMVKAFSEACKKNIPYEVVGR--------REGDIASSYCDASLAKKELAWEAKYGLDKM 235
F+ + F + +IP ++ + + SL +K+ E+ + +
Sbjct: 375 FDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSI 431
Query: 236 YLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNV 271
YL+ + + H S+++H YN+
Sbjct: 432 YLELKVKLENEYAL---------HR--SIVDH-YNI 455
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 36.8 bits (85), Expect = 0.009
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 245 KFILVTG-GAGYIGSHTVVSLLEHGYNVVV 273
K++L+TG G G IG+ + LL+ G VVV
Sbjct: 477 KYVLITGAGKGSIGAEVLQGLLQGGAKVVV 506
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 36.0 bits (84), Expect = 0.011
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 18/83 (21%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET--------GKPESLK--- 293
K LVTG G IG T + L E G + ++D +N +E+ + S
Sbjct: 8 KVCLVTGAGGNIGLATALRLAEEGTAIALLD--MNREALEKAEASVREKGVEARSYVCDV 65
Query: 294 ----RVENLTGKTVE-YHEVDIL 311
V V + ++D L
Sbjct: 66 TSEEAVIGTVDSVVRDFGKIDFL 88
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 36.0 bits (84), Expect = 0.011
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+ +VTGG IG T ++G VVV D VN ++ RV N G
Sbjct: 28 RVCIVTGGGSGIGRATAELFAKNGAYVVVAD--VNE---------DAAVRVANEIGSKAF 76
Query: 305 YHEVDILQVSD 315
VD VS
Sbjct: 77 GVRVD---VSS 84
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 36.0 bits (84), Expect = 0.011
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
+ +L+TGG +G T V L G + +VD V++ +E +
Sbjct: 14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVD--VSSEGLEAS 53
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 36.0 bits (84), Expect = 0.012
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+ ILVTG + IG ++ +G V+++ N ++ + + TG+ +
Sbjct: 13 RIILVTGASDGIGREAAMTYARYGATVILLG--RNEEKLRQV-----ASHINEETGRQPQ 65
Query: 305 YHEVDILQVSD 315
+ +D L
Sbjct: 66 WFILD-LLTCT 75
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 35.6 bits (83), Expect = 0.012
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 17/81 (20%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETG-----------KPES 291
K L+TG A IG + + G V + D + R E G + +S
Sbjct: 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDS 68
Query: 292 LKRVENLTGKTVE-YHEVDIL 311
++ TVE +DIL
Sbjct: 69 ---IDAAIAATVEHAGGLDIL 86
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 35.7 bits (83), Expect = 0.013
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
I++TG G++G+H + + + + R E +V + V
Sbjct: 3 IMLTGATGHLGTHITNQAIANHIDHFHI-----GVRNVE--------KVPDDWRGKVSVR 49
Query: 307 EVDILQVSDLREIF 320
++D + E F
Sbjct: 50 QLDYFNQESMVEAF 63
Score = 34.2 bits (79), Expect = 0.040
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 138 GSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEACKKN 197
G G +YI D+A ++ G K Y L +G Y + E+ SEA
Sbjct: 165 GDGRINYITRNDIAR--GVI--AIIKNPDTWG-KRYLL-SGYSYDMKELAAILSEASGTE 218
Query: 198 IPYEVVGRRE 207
I YE V
Sbjct: 219 IKYEPVSLET 228
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 35.6 bits (83), Expect = 0.013
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNAC-----RVEETGKPESLK-------RV 295
LVTGG+ IG LLE G V + AC R+ G +++
Sbjct: 33 LVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGA 92
Query: 296 ENLTGKTVE-YHEVDIL 311
L E +DIL
Sbjct: 93 RRLAQALGELSARLDIL 109
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 34.6 bits (80), Expect = 0.013
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEE 285
+ N +F ++ G G G V L G+ V+ VD N +V
Sbjct: 4 IKNKQFAVI--GLGRFGGSIVKELHRMGHEVLAVDI--NEEKVNA 44
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 36.1 bits (82), Expect = 0.014
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+L+ G+G++ T+ L + G V V + + + K + T
Sbjct: 6 VLM-LGSGFVTRPTLDVLTDSGIKVTVACRTLESAK----------KLSAGVQHSTP--I 52
Query: 307 EVDILQVSDLREIFSK 322
+D+ + L +K
Sbjct: 53 SLDVNDDAALDAEVAK 68
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 35.6 bits (83), Expect = 0.015
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 21/83 (25%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET---------------GKP 289
K L+TG G + G VV+VD + E K
Sbjct: 10 KVALITGAGSGFGEGMAKRFAKGGAKVVIVD--RDKAGAERVAGEIGDAALAVAADISKE 67
Query: 290 ESLKRVENLTGKTVE-YHEVDIL 311
V+ + + +VDIL
Sbjct: 68 AD---VDAAVEAALSKFGKVDIL 87
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 35.6 bits (83), Expect = 0.015
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K +++TGG+ +G + G VV+ ++EE +E G+ +
Sbjct: 7 KVVIITGGSSGMGKGMATRFAKEGARVVITGR--TKEKLEEA-----KLEIEQFPGQ-IL 58
Query: 305 YHEVDILQVSDLREIFSK 322
++D+ D++++ +
Sbjct: 59 TVQMDVRNTDDIQKMIEQ 76
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 35.2 bits (82), Expect = 0.016
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
LVTG IG TV +L G VV V + K +E
Sbjct: 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVT--RTNSDLVSLAK----------ECPGIE 55
Query: 305 YHEVDILQVSDLREIFSK 322
VD+ +
Sbjct: 56 PVCVDLGDWDATEKALGG 73
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 35.2 bits (82), Expect = 0.016
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
+VTGG+ IG TV LLE G V + R+ +L+ + G +
Sbjct: 12 VVTGGSSGIGLATVELLLEAGAAVAFCA--RDGERLRAAE--SALR--QRFPGARLFASV 65
Query: 308 VDILQVSD 315
D V D
Sbjct: 66 CD---VLD 70
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 35.2 bits (82), Expect = 0.017
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 232 LDKMYLQRDMSNPKFILVTGGAGY--IGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKP 289
LD++ L+ K ++VTG +G +G E G V + + +
Sbjct: 13 LDQLSLKG-----KVVVVTGASGPKGMGIEAARGCAEMGAAVAITYA-----SRAQGAE- 61
Query: 290 ESLKRVENLTGKTVEYHEVDILQVSDLREI 319
E++K +E G + ++ V
Sbjct: 62 ENVKELEKTYGIKAKAYKCQ---VDSYESC 88
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 35.2 bits (82), Expect = 0.017
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 17/81 (20%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETG-----------KPES 291
K +++TGGA +G+ + G VV+ D L E G E
Sbjct: 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEED 65
Query: 292 LKRVENLTGKTVE-YHEVDIL 311
+ + E + VD L
Sbjct: 66 ---WQRVVAYAREEFGSVDGL 83
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 35.2 bits (82), Expect = 0.018
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVE-ETGKPESLKRVENL---TGKTV 303
+TG A G V L G +++ VD V PE L L G +
Sbjct: 17 FITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRI 76
Query: 304 EYHEVDILQVSDL 316
+ D V D
Sbjct: 77 VARQAD---VRDR 86
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 35.2 bits (82), Expect = 0.019
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 248 LVTGGAGY-IGSHTVVSLLEHGYNVVVVDN-------LVNACRVEETGKPESLK------ 293
LVT AG IGS T L G +VV+ D + G+ E++
Sbjct: 26 LVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTST 85
Query: 294 -RVENLTGKTVEYH-EVDIL 311
V+ L +TVE +D+L
Sbjct: 86 EAVDALITQTVEKAGRLDVL 105
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 35.2 bits (82), Expect = 0.019
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET-------GKPESLKRVENLTG 300
LVTG AG IG V +L G V V D + + + L G
Sbjct: 32 LVTGAAGGIGGAVVTALRAAGARVAVAD--RAVAGIAADLHLPGDLREAAY---ADGLPG 86
Query: 301 KTVEYH-EVDIL 311
+DI+
Sbjct: 87 AVAAGLGRLDIV 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.019
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 19/40 (47%)
Query: 58 KQKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPS 97
KQ L+ LQ+ SL+ + S P+
Sbjct: 19 KQALKKLQA------------------SLKLYAD-DSAPA 39
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 35.2 bits (82), Expect = 0.019
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K ++TG G IG T L G VV+ D + L G+
Sbjct: 12 KVAIITGACGGIGLETSRVLARAGARVVLAD--LPE---------TDLAGAAASVGRGAV 60
Query: 305 YHEVDILQVSD 315
+H VD +++
Sbjct: 61 HHVVD---LTN 68
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 35.4 bits (82), Expect = 0.020
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+ +VTGGA IG T G +V+ D V+ +E+ L+ G
Sbjct: 32 RAAVVTGGASGIGLATATEFARRGARLVLSD--VDQPALEQAV--NGLRG----QGFDAH 83
Query: 305 YHEVDILQVSDLREI 319
D V L E+
Sbjct: 84 GVVCD---VRHLDEM 95
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 35.2 bits (82), Expect = 0.020
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
+VTG IG L + G +V+ D ++ +
Sbjct: 33 IVTGAGAGIGLAVARRLADEGCHVLCAD--IDGDAADAA 69
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 34.8 bits (81), Expect = 0.021
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLK------RVENLTGK 301
LVTGG+ IG +L+ GY V + N ++ L + L +
Sbjct: 6 LVTGGSRGIGRAIAEALVARGYRVAIAS--RNPEEAAQSLGAVPLPTDLEKDDPKGLVKR 63
Query: 302 TVE-YHEVDIL 311
+E + +L
Sbjct: 64 ALEALGGLHVL 74
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 35.2 bits (82), Expect = 0.021
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD--NLVNACRVEETGKPESLKRVENL---TGKT 302
+TG A G V + G +++ VD + +C + P+ L L +
Sbjct: 15 FITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRR 74
Query: 303 VEYHEVDILQVSD 315
+ VD D
Sbjct: 75 IVAAVVD---TRD 84
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 34.8 bits (81), Expect = 0.022
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
+VTG + G L G V +D ET + E+ + + V
Sbjct: 6 IVTGASSGNGLAIATRFLARGDRVAALD------LSAETLE-ETARTHWHAYADKVLRVR 58
Query: 308 VDILQVSD 315
D V+D
Sbjct: 59 AD---VAD 63
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 34.9 bits (81), Expect = 0.022
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
MS I+VTG +G + L+E G+ V ++ R + + L++ E L G
Sbjct: 1 MSL-GHIIVTGAGSGLGRALTIGLVERGHQVSMMG------R-----RYQRLQQQELLLG 48
Query: 301 KTVEYHEVDILQVSDLREIFSK 322
V D+ D+ F+
Sbjct: 49 NAVIGIVADLAHHEDVDVAFAA 70
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 34.9 bits (81), Expect = 0.024
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 238 QRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGK 288
MS P+ VTG + IG +L G V +A V
Sbjct: 18 GSHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCAR--DAKNVSAAVD 66
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 35.2 bits (82), Expect = 0.024
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 173 YNLGTGTGYSVFEMVK-AFSEACKKNIPYEVVGR------REGDIASSYCDASLAKKELA 225
Y + TG +V +M + AF + Y + R ++ + + A++ L
Sbjct: 254 YVVATGVTTTVRDMCQIAFEHV---GLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLG 310
Query: 226 WEAKYGLDKM 235
W+ + LD++
Sbjct: 311 WKPRTSLDEL 320
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 34.8 bits (81), Expect = 0.027
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 231 GLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
G + +Y Q MS+ +LVTGG+ IG+ G+ V V
Sbjct: 14 GTENLYFQS-MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGV 55
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 34.9 bits (81), Expect = 0.028
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 231 GLDKMYLQRDMSN--PKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
G + +Y Q M+ +VTGG IG +L G+++ +
Sbjct: 14 GTENLYFQSMMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI 61
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 34.8 bits (81), Expect = 0.028
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
L+TG IG+ + G +V+ + ++ + + G V
Sbjct: 24 LITGATKGIGADIARAFAAAGARLVLSG--RDVSELDAA-----RRALGEQFGTDVHTVA 76
Query: 308 VDILQVSDLREIF 320
+D+ + E+
Sbjct: 77 IDLAEPDAPAELA 89
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 34.9 bits (81), Expect = 0.029
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVE-ETGKPESLKRVENL---TGKTV 303
+TG A G ++L G +++ +D V+ P+ L G+ +
Sbjct: 32 FITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRI 91
Query: 304 EYHEVDILQVSDL 316
+VD V D
Sbjct: 92 IASQVD---VRDF 101
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 34.5 bits (80), Expect = 0.029
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
+VTGG+ IG+ +L + G V + D ++ +
Sbjct: 16 IVTGGSKGIGAAIARALDKAGATVAIAD--LDVMAAQAV 52
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 34.7 bits (80), Expect = 0.029
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
+ + K IL+TG + G T +L G+ V + E++
Sbjct: 2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYAS---MRDIVGRNASNVEAIAGFARDND 58
Query: 301 KTVEYHEVDI 310
+ E+D+
Sbjct: 59 VDLRTLELDV 68
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 34.6 bits (80), Expect = 0.030
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLE-HGYNVVVVDNLVNACRVEETGK--PESLKRVENL 298
S LVTGG IG V L +VV+ R G+ + L+
Sbjct: 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVL------TARDVTRGQAAVQQLQA---- 51
Query: 299 TGKTVEYHEVDILQVSDLREI 319
G + +H++D + DL+ I
Sbjct: 52 EGLSPRFHQLD---IDDLQSI 69
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 34.2 bits (79), Expect = 0.031
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGK 301
SN IL+ G +G +GS LE V+ V+ T +S+K++ GK
Sbjct: 1 SNAMKILLIGASGTLGSAVKE-RLEKKAEVITAGRHSGDVTVDIT-NIDSIKKMYEQVGK 58
Query: 302 TVEYHEVDIL 311
VD +
Sbjct: 59 ------VDAI 62
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 34.5 bits (80), Expect = 0.032
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 21/79 (26%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETG-----------KPESLK 293
K ++VTG + IG ++ G V+ + + P+
Sbjct: 9 KVVIVTGASMGIGRAIAERFVDEGSKVIDLS------IHDPGEAKYDHIECDVTNPDQ-- 60
Query: 294 RVENLTGKTVE-YHEVDIL 311
V+ + Y + +L
Sbjct: 61 -VKASIDHIFKEYGSISVL 78
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 34.4 bits (80), Expect = 0.032
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
++TGGAG IG T + +G VV+ D
Sbjct: 20 IITGGAGGIGETTAKLFVRYGAKVVIAD 47
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 34.5 bits (80), Expect = 0.036
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
L+TGGA +G V + G V V+D +A E L+ +E G
Sbjct: 9 LITGGASGLGRALVDRFVAEGARVAVLD--KSA---------ERLRELEVAHGGNAVGVV 57
Query: 308 VDILQVSDLREIFSK 322
D+ + D + +
Sbjct: 58 GDVRSLQDQKRAAER 72
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 34.1 bits (79), Expect = 0.039
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD--NLVNACRVEETGKPESLKRVENL---TGKT 302
+TG A G V L G +++ D V+A PE L L G+
Sbjct: 19 FITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRK 78
Query: 303 VEYHEVDILQVSD 315
+D V D
Sbjct: 79 ALTRVLD---VRD 88
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 34.0 bits (79), Expect = 0.039
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGK 288
K I++T A IG ++ G V+ D +N +++E K
Sbjct: 7 KVIILTAAAQGIGQAAALAFAREGAKVIATD--INESKLQELEK 48
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 34.1 bits (79), Expect = 0.041
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
LVTGG IG L+ G +V++V N ++
Sbjct: 15 LVTGGGSGIGKGVAAGLVAAGASVMIVG--RNPDKLAGA 51
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 34.3 bits (78), Expect = 0.042
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
M + K ++V G +G IG + + L GY+V ++
Sbjct: 3 MHSQKRVVVLG-SGVIGLSSALILARKGYSVHILA 36
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 34.1 bits (79), Expect = 0.042
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET-----------GKPESLK 293
K +++TG + IG T + + G NV + ++ R+EET + S+
Sbjct: 7 KTVIITGSSNGIGRTTAILFAQEGANVTITG--RSSERLEETRQIILKSGVSEKQVNSVV 64
Query: 294 -------RVENLTGKTVE-YHEVDIL 311
+ + T++ + ++D+L
Sbjct: 65 ADVTTEDGQDQIINSTLKQFGKIDVL 90
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 34.1 bits (79), Expect = 0.043
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEE 285
I +TG A IG+ L G+ V+ +D +E
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGID--RGQADIEA 40
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 34.0 bits (79), Expect = 0.043
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 17/81 (20%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETG-----------KPES 291
K LV+GGA +G+ V +++ G VV D L + E +P
Sbjct: 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQ 67
Query: 292 LKRVENLTGKTVE-YHEVDIL 311
+ V + + +L
Sbjct: 68 ---WKAAVDTAVTAFGGLHVL 85
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 34.0 bits (79), Expect = 0.044
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD-NLVNACRVEETGKPESLK-------RVENLT 299
L+TG A IG T+ + G +V D E + VE
Sbjct: 9 LITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGF 68
Query: 300 GKTVEYH-EVDIL 311
+ + + +D +
Sbjct: 69 AEALAHLGRLDGV 81
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 33.4 bits (77), Expect = 0.046
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRV-ENLTGKTVE 304
G G +GS G++VVVVD + R+ +G TV
Sbjct: 26 GCGRLGSLIANLASSSGHSVVVVDK-----------NEYAFHRLNSEFSGFTVV 68
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 34.1 bits (79), Expect = 0.049
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLT 299
+ + +++TG +G+ T L G V++ A R G+ +
Sbjct: 13 SFAQ-RTVVITGANSGLGAVTARELARRGATVIM------AVRDTRKGE----AAARTMA 61
Query: 300 GKTVEYHEVDILQVSDLREI 319
G+ VE E+D + DL +
Sbjct: 62 GQ-VEVRELD---LQDLSSV 77
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 33.6 bits (78), Expect = 0.051
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETGKPESL---------- 292
K ++TGG IG +E G V++ + + G P+ +
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDE 66
Query: 293 KRVENLTGKTVE-YHEVDIL 311
L T + + V L
Sbjct: 67 DGWTKLFDATEKAFGPVSTL 86
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 33.6 bits (78), Expect = 0.052
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 18/83 (21%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET--------GKPESLK--- 293
K +VTG G IG +L G VVV D +NA E G S+
Sbjct: 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVAD--INAEAAEAVAKQIVADGGTAISVAVDV 67
Query: 294 ----RVENLTGKTVE-YHEVDIL 311
+ + +T+ + +D L
Sbjct: 68 SDPESAKAMADRTLAEFGGIDYL 90
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 33.7 bits (78), Expect = 0.052
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
LVTG IG + L++ G+ V + D N +
Sbjct: 6 LVTGAGQGIGKAIALRLVKDGFAVAIAD--YNDATAKAV 42
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 33.6 bits (78), Expect = 0.053
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K LVTGGA +G V LL G V D +N + +++ G+
Sbjct: 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSD--INE---------AAGQQLAAELGERSM 55
Query: 305 YHEVDILQVSD 315
+ D VS
Sbjct: 56 FVRHD---VSS 63
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 33.6 bits (78), Expect = 0.054
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET--------GKPESLK--- 293
K ++VTG IG + VV V+ + R+ + + +K
Sbjct: 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVE--LLEDRLNQIVQELRGMGKEVLGVKADV 65
Query: 294 ----RVENLTGKTVE-YHEVDIL 311
VE +T E Y +D+L
Sbjct: 66 SKKKDVEEFVRRTFETYSRIDVL 88
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 33.7 bits (78), Expect = 0.055
Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
LVTG IG V L G V D ++ +ET L + G
Sbjct: 8 ALALVTGAGSGIGRAVSVRLAGEGATVAACD--LDRAAAQETV--RLLGGPGSKEGPPRG 63
Query: 305 YHEVDILQVSDLREI 319
H VS+ R
Sbjct: 64 NHAAFQADVSEARAA 78
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 33.8 bits (78), Expect = 0.055
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
I VTG G +G + LL+ V ++ R ++++ L + VE
Sbjct: 3 IAVTGATGQLGGLVIQHLLKK----VPASQIIAIVR--------NVEKASTLADQGVEVR 50
Query: 307 EVDILQVSDLREIF 320
D Q L++ F
Sbjct: 51 HGDYNQPESLQKAF 64
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 138 GSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEACKKN 197
GSG+ + + +LA A +L + K YNL + ++ E+ + SE K
Sbjct: 166 GSGIVNSVTRNELAL--AAA--TVLTEEGHEN-KTYNLVSNQPWTFDELAQILSEVSGKK 220
Query: 198 IPYEVVGRRE 207
+ ++ V E
Sbjct: 221 VVHQPVSFEE 230
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 33.7 bits (78), Expect = 0.058
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
K +VTG + IG + G VVV N + E
Sbjct: 9 KIAIVTGASSGIGRAAALLFAREGAKVVVTA--RNGNALAEL 48
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 33.8 bits (78), Expect = 0.058
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVE-ETGKPESLKRVENL---TGKTV 303
LVTGGA G V L E G ++++ D + E L+ TG+
Sbjct: 14 LVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKA 73
Query: 304 EYHEVDILQVSD 315
EVD V D
Sbjct: 74 YTAEVD---VRD 82
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 33.6 bits (78), Expect = 0.058
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 17/78 (21%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETG-----------KPESLKR 294
LVTG A IG L G V+V D + G P S
Sbjct: 10 LVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGS--- 66
Query: 295 VENLTGKTVEYH-EVDIL 311
V+ L + +DIL
Sbjct: 67 VKALFAEIQALTGGIDIL 84
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 33.7 bits (78), Expect = 0.061
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 235 MYLQRDMSNP---KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPES 291
M + M K +++TG + IG E G+ ++++ A RVE
Sbjct: 4 MTGGQQMGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLL-----ARRVE------- 51
Query: 292 LKRVENLTGKTVEYHEVDILQVSDLREI 319
R++ L +VD V+D
Sbjct: 52 --RLKALNLPNTLCAQVD---VTDKYTF 74
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 33.8 bits (78), Expect = 0.063
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 173 YNLGTGTGYSVFEMV-KAFSEACKKNIPYEVVGR------REGDIASSYCDASLAKKELA 225
Y + T G++V E + +F + ++ R ++ + DAS AK+ L
Sbjct: 277 YVVATEEGHTVEEFLDVSFGYL---GLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLG 333
Query: 226 WEAKYGLDKM 235
W+ + G +K+
Sbjct: 334 WKPQVGFEKL 343
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 33.3 bits (77), Expect = 0.065
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+ ILVTG A IG+ + HG +VV++
Sbjct: 15 RVILVTGAARGIGAAAARAYAAHGASVVLLG 45
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 33.3 bits (77), Expect = 0.068
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 15/79 (18%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD-------NLVNACRVEETGKPESLK------- 293
+VTGG IG G NV V V +GK ++
Sbjct: 14 VVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRA 73
Query: 294 RVENLTGKTVEYH-EVDIL 311
+ + L G+ VE +D++
Sbjct: 74 QCDALAGRAVEEFGGIDVV 92
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 33.7 bits (78), Expect = 0.069
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVE-ETGKPESLKRVENL---TGKTV 303
L+TGGA +G V+L E G ++ + D N+ V + L L TG+
Sbjct: 14 LITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRC 73
Query: 304 EYHEVDILQVSDL 316
+VD V D
Sbjct: 74 ISAKVD---VKDR 83
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 33.1 bits (76), Expect = 0.069
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 242 SNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
S PK +L+ G G G H + +L V+
Sbjct: 3 STPKRVLLAGATGLTGEHLLDRILSEPTLAKVI 35
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 33.2 bits (77), Expect = 0.071
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
++TGGA IG G ++ + D
Sbjct: 11 VITGGANGIGRAIAERFAVEGADIAIAD 38
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 33.3 bits (77), Expect = 0.077
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
LVTGG+ IG V L G V N ++E L+ G VE
Sbjct: 25 LVTGGSKGIGYAIVEELAGLGARVYTCS--RNEKELDEC-----LEIWREK-GLNVEGSV 76
Query: 308 VDILQVSDLREIFSK 322
D+L ++ ++
Sbjct: 77 CDLLSRTERDKLMQT 91
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 33.4 bits (77), Expect = 0.081
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
+VTG A IG V L + GY VV+ +
Sbjct: 24 PAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYH 55
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 33.3 bits (77), Expect = 0.083
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
++TG + IG + G ++V+V R+ E + ++ G V
Sbjct: 11 VITGSSSGIGLAIAEGFAKEGAHIVLVA--RQVDRLHEA-----ARSLKEKFGVRVLEVA 63
Query: 308 VDILQVSDLREIF 320
VD+ + +
Sbjct: 64 VDVATPEGVDAVV 76
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 33.3 bits (77), Expect = 0.084
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD-----NLVNACRVEETGKPESLKRVENL---T 299
VTG A G V L + G +++ VD PE L +L
Sbjct: 15 FVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH 74
Query: 300 GKTVEYHEVDILQVSDLRE 318
+ + EVD+ L+
Sbjct: 75 NRRIVTAEVDVRDYDALKA 93
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 33.5 bits (77), Expect = 0.091
Identities = 49/248 (19%), Positives = 80/248 (32%), Gaps = 52/248 (20%)
Query: 8 HFVFSSSSTVYGTPKFLPFTEDHPTGQGC-TNPYGKSKYFVEEILKDLASFKQKLQSLQS 66
+F S+S VYG F EDH P K ++ + KQ L +
Sbjct: 426 RIIFPSTSEVYGMCSDKYFDEDH---SNLIVGPVNKPRWI-------YSVSKQLLDRV-- 473
Query: 67 SVTQIWLNSVHRS-DWHIISLRYFNPVGSHPSGDIGEDP-NGIPNNLMPYISQVAVGRRK 124
IW + + R FN +G P D G + I + G
Sbjct: 474 ----IWAYGEKEGLQFTLF--RPFNWMG--PRLDNLNAARIGSSRAITQLILNLVEGSPI 525
Query: 125 KLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKS-QAGFKAYNLGTGTG-YS 182
KL+ G R + I D E AL +++ + + N+G S
Sbjct: 526 KLI--------DGGKQKRCFTDIRDGIE----ALYRIIENAGNRCDGEIINIGNPENEAS 573
Query: 183 VFE----MVKAFSEACKKNIPYEVVGRREGDIASSYC-----------DASLAKKELAWE 227
+ E ++ +F + ++ G R + +S Y A + L WE
Sbjct: 574 IEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWE 633
Query: 228 AKYGLDKM 235
K + +
Sbjct: 634 PKIDMQET 641
Score = 31.5 bits (72), Expect = 0.36
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 238 QRDMSNPKFILVTGGAGYIGSHTVVSLLEHG-YNVVVVDN 276
+L+ G G+IG+H LL Y V +D
Sbjct: 309 ACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI 348
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 32.9 bits (76), Expect = 0.095
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
L+TG IG T ++L G V + VEE
Sbjct: 32 LITGAGSGIGRATALALAADGVTVGALG--RTRTEVEEV 68
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 33.1 bits (76), Expect = 0.098
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 239 RDMSNP--KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
M+ P LVTG A +G L GY V +
Sbjct: 2 SHMTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCL 38
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 32.7 bits (75), Expect = 0.10
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
MS P ++VTG IG V L++ + + R E ++++
Sbjct: 1 MS-PGSVVVTGANRGIGLGLVQQLVKDKNIRHI----IATAR-----DVEKATELKSIKD 50
Query: 301 KTVEYHEVDI 310
V + +
Sbjct: 51 SRVHVLPLTV 60
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 32.9 bits (76), Expect = 0.10
Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 34/132 (25%)
Query: 122 RRKKLMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTAL---DKLLGGKSQAGFKAYNLGTG 178
+ ++V+G G+ +R+++H+ D+A + + ++ +Q N+GTG
Sbjct: 195 KAPDVVVWGS------GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG 248
Query: 179 TGYSVFEMVKAFSEACKKNIPYEVVGRREGDIA--SSY--------CDASLAKKELAWEA 228
++ E+ + + +VVG +G + +S D + + L W
Sbjct: 249 VDCTIRELAQTIA---------KVVG-YKGRVVFDASKPDGTPRKLLDVTRLHQ-LGWYH 297
Query: 229 KY----GLDKMY 236
+ GL Y
Sbjct: 298 EISLEAGLASTY 309
Score = 27.5 bits (62), Expect = 5.6
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGY-NVVVVD----NLVNACRVE---ETGKPE 290
M+ + + + G G +GS L + G +V+ NL+++ V + + +
Sbjct: 1 MAKQR-VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERID 57
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 32.9 bits (76), Expect = 0.11
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
+VT + G + + L E G+ V D S K+ + L Y +
Sbjct: 5 IVTNVKHFGGMGSALRLSEAGHTVACHDE--------------SFKQKDELEAFAETYPQ 50
Query: 308 VDILQVSDLREIFSK 322
+ + + E+
Sbjct: 51 LKPMSEQEPAELIEA 65
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 32.4 bits (73), Expect = 0.11
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDN---------LVNACRVEETGKPE----SLK 293
+L+TG A S ++L++ G+ +V D L+ +C G +
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYILITGIGII 78
Query: 294 RVENLTGKTVEYHEVDILQVSDL 316
V L G ++ ++ L
Sbjct: 79 DVPKLFGLDAVVNQHEVHLSISL 101
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 32.9 bits (76), Expect = 0.11
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 235 MYLQRDMS-NPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR-----VEETG- 287
M + N +VTG A IG + + G +VVV D + + G
Sbjct: 2 MSYESPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG 61
Query: 288 ----------KPESLKRVENLTGKTVE-YHEVDIL 311
+ E + ++ + ++ +L
Sbjct: 62 KAIGLECNVTDEQH---REAVIKAALDQFGKITVL 93
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 32.9 bits (76), Expect = 0.11
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
L+T G +G LL GY+V V +
Sbjct: 11 LITAGTKGLGKQVTEKLLAKGYSVTVTYH 39
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 32.8 bits (76), Expect = 0.11
Identities = 21/81 (25%), Positives = 24/81 (29%), Gaps = 20/81 (24%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEE--------------TGKPES 291
LVT IG L + G +VVV V GK E
Sbjct: 18 LVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAED 77
Query: 292 LKRVENLTGKTVE-YHEVDIL 311
E L V + VDIL
Sbjct: 78 ---RERLVAMAVNLHGGVDIL 95
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 32.5 bits (74), Expect = 0.12
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
M N + + G +G G + +LE G + R + + +
Sbjct: 16 MQNKS-VFILGASGETGRVLLKEILEQGL----FSKVTLIGR-----RKLTF---DEEAY 62
Query: 301 KTVEYHEVDILQVSDLREIF 320
K V VD ++ D F
Sbjct: 63 KNVNQEVVDFEKLDDYASAF 82
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 32.6 bits (75), Expect = 0.13
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 229 KYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLE 266
+G M ++M + + IL+TGG G G V +L+
Sbjct: 6 HHGSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLD 43
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 32.5 bits (75), Expect = 0.13
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
K +L+TG + IG T G V +
Sbjct: 8 KRVLITGSSQGIGLATARLFARAGAKVGLHGR 39
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 32.5 bits (75), Expect = 0.13
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 231 GLDKMYLQRDMSNPKF------ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVE 284
G DK++ F LVTGG+ +G L E G +VVV R
Sbjct: 2 GSDKIHHHHHHMKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVAS------RNL 55
Query: 285 ETGKPESLKRVENLTGKTVEYHEVDILQVSDLREIFSK 322
E + K E G D+ +++++
Sbjct: 56 EEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEA 92
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD,
RCK domain, potassium transport, potassium channel,
KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii}
SCOP: c.2.1.9
Length = 140
Score = 31.7 bits (73), Expect = 0.14
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVDN 276
G G +G SL E G+++V++D
Sbjct: 11 GIGRVGYTLAKSLSEKGHDIVLIDI 35
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 32.6 bits (75), Expect = 0.14
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
I +TG G +G + + SL++ +V R + + L + +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPAS----QIVAIVRNPA--------KAQALAAQGITVR 49
Query: 307 EVDILQVSDLREIF 320
+ D + L
Sbjct: 50 QADYGDEAALTSAL 63
Score = 31.5 bits (72), Expect = 0.32
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 138 GSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTG-TGYSVFEMVKAFSEACKK 196
G G D A A +++ G K Y L G + +++ ++ ++ K
Sbjct: 162 GDGKIASATRADYAA--AAA--RVISEAGHEG-KVYEL-AGDSAWTLTQLAAELTKQSGK 215
Query: 197 NIPYEVVGRRE 207
+ Y+ + +
Sbjct: 216 QVTYQNLSEAD 226
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 32.9 bits (75), Expect = 0.14
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETGKPESLKRVENLTGKTVEY 305
L+TGG G IG L G + LV R E G E + + G V +
Sbjct: 263 LITGGMGAIGRRLARRLAAEG-----AERLVLTSRRGPEAPGAAELAEELRGH-GCEVVH 316
Query: 306 HEVDILQVSDLREIF 320
D+ + L +
Sbjct: 317 AACDVAERDALAALV 331
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 32.6 bits (75), Expect = 0.15
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
K ++TG + IG T V G V + +A R+EET
Sbjct: 7 KVAIITGSSNGIGRATAVLFAREGAKVTITG--RHAERLEET 46
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 32.4 bits (74), Expect = 0.15
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 241 MSNP--KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
M+ P LVTG A +G L GY V +
Sbjct: 41 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCL 75
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 32.6 bits (75), Expect = 0.16
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVE-ETGKPESLKRVENL---TGKTV 303
+TG A G V L + G ++V +D ++ G PE LK L G+ +
Sbjct: 50 FITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRI 109
Query: 304 EYHEVDILQVSDLREI 319
+ D V DL +
Sbjct: 110 IARQAD---VRDLASL 122
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 32.4 bits (73), Expect = 0.16
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVE 296
++R + + +L+ GAG + ++ +L G+ +V V + R ES + +
Sbjct: 4 MKRSIEDTPIVLI--GAGNLATNLAKALYRKGFRIVQVYS-----R-----TEESARELA 51
Query: 297 NLTGKTVEYHEVDILQVSDL 316
++ + L
Sbjct: 52 QKVEAEYTTDLAEVNPYAKL 71
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 32.1 bits (74), Expect = 0.16
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDN-------LVNACRVEETGKPESLKRVENLTG 300
LVT + G V +L + GY VV D + ++ E L
Sbjct: 5 LVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVD 64
Query: 301 KTVEYHE-VDIL 311
T+++ E +D +
Sbjct: 65 ATLQHGEAIDTI 76
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 32.1 bits (74), Expect = 0.16
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
M + VTGG G +G+ L + G V V
Sbjct: 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAV 54
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 31.5 bits (72), Expect = 0.16
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 243 NPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEE 285
++I++ G+ G V L G V+ VD + ++E
Sbjct: 6 RYEYIVI--GSEAAGVGLVRELTAAGKKVLAVDK--SKEKIEL 44
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 32.2 bits (74), Expect = 0.17
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 15/79 (18%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDN-------LVNACRVEETGKPESLK------- 293
LVTGG IG G NV V + G ++
Sbjct: 45 LVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPG 104
Query: 294 RVENLTGKTVEYH-EVDIL 311
+ V+ +D++
Sbjct: 105 SCADAARTVVDAFGALDVV 123
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 32.2 bits (74), Expect = 0.18
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
K +++TG + IG V + G V + N R+EET
Sbjct: 27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITG--RNEDRLEET 66
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 32.1 bits (74), Expect = 0.20
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 20/81 (24%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR-----VEETG-----------KPES 291
+++G +G+ E G ++V+ V V +TG
Sbjct: 15 VISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQ 74
Query: 292 LKRVENLTGKTVE-YHEVDIL 311
V +L +T++ Y VD++
Sbjct: 75 ---VAHLVDETMKAYGRVDVV 92
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 32.1 bits (74), Expect = 0.21
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 231 GLDKMYLQRDMSNP---KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETG 287
G + +Y Q M+ K ++TG IG + G V +
Sbjct: 14 GTENLYFQ-SMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGR----------- 61
Query: 288 KPESLKRVENLTGKTVEYHEVDILQVSDLREIF 320
+ + L G + D +++L ++
Sbjct: 62 RKDVLDAAIAEIGGGAVGIQADSANLAELDRLY 94
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 32.2 bits (73), Expect = 0.22
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
K +V G G +G + L G VV+
Sbjct: 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCG 150
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 31.7 bits (73), Expect = 0.22
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K +V GG +G TV L+E G V++ ++ R+ G V
Sbjct: 9 KKAIVIGGTHGMGLATVRRLVEGGAEVLLTGR-----------NESNIARIREEFGPRVH 57
Query: 305 YHEVDILQVSDLREIFSK 322
DI ++++ + +
Sbjct: 58 ALRSDIADLNEIAVLGAA 75
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 32.2 bits (73), Expect = 0.22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLLEH 267
L + +L+TG G++G + V+ LL
Sbjct: 66 LPGPSPELRTVLLTGATGFLGRYLVLELLRR 96
Score = 31.4 bits (71), Expect = 0.37
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 8 HFVFSSSSTVYGTPKFLPFTED---------HPTGQGCTNPYGKSKYFVEEIL 51
F + S++ V + FTED G YG SK+ E +L
Sbjct: 208 PFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLL 260
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 31.7 bits (73), Expect = 0.24
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
LVTGG+ IG V L G +V N + + L + + G VE
Sbjct: 13 LVTGGSRGIGYGIVEELASLGASVYTCSR--NQKELNDC-----LTQWRSK-GFKVEASV 64
Query: 308 VDILQVSDLREIFSK 322
D+ S+ +E+ +
Sbjct: 65 CDLSSRSERQELMNT 79
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 31.7 bits (73), Expect = 0.26
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
M K LVTG + IG + L E GYNV V
Sbjct: 1 MKMTKSALVTGASRGIGRSIALQLAEEGYNVAV 33
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 31.6 bits (72), Expect = 0.27
Identities = 30/225 (13%), Positives = 54/225 (24%), Gaps = 62/225 (27%)
Query: 6 VYHFVFSSSSTVYGTPKFLPFTEDHPTGQGCTNPYGKSKYFVEEILKDLASFKQKLQSLQ 65
+ H F SS+ VYG ED P + GK E +L
Sbjct: 101 LQHVFFVSSTGVYGQEVEEWLDEDTPP--IAKDFSGKRMLEAEALL-------------- 144
Query: 66 SSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDIGEDPNGIPNNLMPYISQVAVGRRKK 125
+ + LR SG G I Q +
Sbjct: 145 -------------AAYSSTILR--------FSGIYGPGRL-------RMIRQAQTPEQ-- 174
Query: 126 LMVFGDDYDTKDGSGVRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFE 185
+ + IH D A + + + Y + V +
Sbjct: 175 ---------WPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPER---LYIVTDNQPLPVHD 222
Query: 186 MVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKY 230
+++ ++ P +G + + ++ Y
Sbjct: 223 LLRWLADRQGIAYPAGATPPVQG---NKKLSNARL-LASGYQLIY 263
Score = 30.8 bits (70), Expect = 0.51
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
MS K IL+ G G +G L G+ V +
Sbjct: 1 MSLSK-ILIAG-CGDLGLELARRLTAQGHEVTGL 32
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 31.8 bits (73), Expect = 0.27
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTG 300
M K IL+TG +G IG L G +++ A R + E++ G
Sbjct: 1 MVMDKVILITGASGGIGEGIARELGVAGAKILLG-----ARRQA---RIEAIATEIRDAG 52
Query: 301 KTVEYHEVDILQVSDLREIFS 321
T +D V+D + +
Sbjct: 53 GTALAQVLD---VTDRHSVAA 70
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 31.5 bits (72), Expect = 0.28
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 241 MSNP---KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
MS + V G YIG+ G+ V
Sbjct: 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGR 38
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 31.5 bits (72), Expect = 0.29
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 231 GLDKMYLQRDMSNP-------KFILVTGGAGYIGSHTVVSLLEHGYNVV 272
G + +Y Q M+ P + LVTG +G IG+ +L++ G VV
Sbjct: 12 GRENLYFQGHMARPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVV 60
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 31.5 bits (72), Expect = 0.29
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 241 MS-NPKFILVTGGAGYIGSHTVVSLLEHGYNVV 272
MS + K LVTG + G + + G V+
Sbjct: 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVI 33
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 31.3 bits (72), Expect = 0.33
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
K L+TG + IGS L + G V++
Sbjct: 15 KTSLITGASSGIGSAIARLLHKLGSKVII 43
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 31.4 bits (72), Expect = 0.33
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
K LVTG + IG + + G +V D +N V+ + + G
Sbjct: 35 KIALVTGASYGIGFAIASAYAKAGATIVFND--INQELVDRG-----MAAYKAA-GINAH 86
Query: 305 YHEVDILQVSDLREIFSK 322
+ D+ ++ + ++
Sbjct: 87 GYVCDVTDEDGIQAMVAQ 104
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 31.0 bits (71), Expect = 0.36
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYH 306
+LVTG G ++ G+ V+ R E L+ +++ G +
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIAT-----GRRQER------LQELKDELGDNLYIA 51
Query: 307 EVDILQVSDLREI 319
++D V + I
Sbjct: 52 QLD---VRNRAAI 61
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 31.4 bits (72), Expect = 0.37
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 21/82 (25%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD-------NLVNACRVEETG-----------KP 289
+VT G+ +G + + L +G +++ + +G +P
Sbjct: 11 VVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREP 70
Query: 290 ESLKRVENLTGKTVEYHEVDIL 311
++ L K + DIL
Sbjct: 71 GD---IDRLFEKARDLGGADIL 89
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 31.0 bits (71), Expect = 0.37
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLK-------RVEN 297
+ +LVTGG IG + + G V + E ++K +VE
Sbjct: 22 RSVLVTGGNRGIGLAIARAFADAGDKVA-----ITYRSGEPPEGFLAVKCDITDTEQVEQ 76
Query: 298 LTGKTVEYH-EVDIL 311
+ E H V++L
Sbjct: 77 AYKEIEETHGPVEVL 91
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 31.0 bits (71), Expect = 0.38
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
+ + + VTGG G IG+ L + G+ VV
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVA 42
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 31.0 bits (71), Expect = 0.38
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 13/75 (17%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLK-------RVEN 297
+ +LVTGG IG L G+ V V ++ V+
Sbjct: 16 RSVLVTGGNRGIGLAIAQRLAADGHKVA-----VTHRGSGAPKGLFGVEVDVTDSDAVDR 70
Query: 298 LTGKTVEYH-EVDIL 311
E+ V++L
Sbjct: 71 AFTAVEEHQGPVEVL 85
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 30.9 bits (71), Expect = 0.40
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
K +++TG + +G + VVV
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYR 39
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 31.0 bits (71), Expect = 0.41
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
+ LVTG G IG G V +
Sbjct: 28 RKALVTGATGGIGEAIARCFHAQGAIVGL 56
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 31.2 bits (71), Expect = 0.41
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETGKPESLKRVENLTGKTVEY 305
LVTGG G IG L E G +LV R + G E +E L G V
Sbjct: 243 LVTGGTGGIGGRVARRLAEQG-----AAHLVLTSRRGADAPGAAELRAELEQL-GVRVTI 296
Query: 306 HEVDILQVSDLREIF 320
D L +
Sbjct: 297 AACDAADREALAALL 311
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 31.1 bits (71), Expect = 0.41
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGK 288
LVTG IG L + G V V + T K
Sbjct: 26 LVTGATSGIGLEIARRLGKEGLRVFVCAR--GEEGLRTTLK 64
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 31.0 bits (71), Expect = 0.42
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 241 MSNP---KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVEN 297
M + K L+TG + IG T +L G V + A RVE K +L
Sbjct: 1 MPSALQGKVALITGASSGIGEATARALAAEGAAVAIA-----ARRVE---KLRALGDELT 52
Query: 298 LTGKTVEYHEVDILQVSDLREI 319
G V E+D V+D + +
Sbjct: 53 AAGAKVHVLELD---VADRQGV 71
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication
checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Length = 160
Score = 30.6 bits (68), Expect = 0.43
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 37 TNPYGKSKYFVEEILKDLASFKQKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHP 96
T+ + Y ++ K K+ +L + +TQ + +V +I+ R +
Sbjct: 70 TDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVT----IVITRRSVENIYLLK 125
Query: 97 SGDI 100
DI
Sbjct: 126 DTDI 129
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 30.9 bits (71), Expect = 0.43
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
+ L+TG + IG + L E G+ + ++ + E + E + V
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALA-----IHYGQNREKAE-EVAEEARRRGSPLVA 55
Query: 305 YHEVDILQVSDLREI 319
+ + +
Sbjct: 56 VLGAN---LLEAEAA 67
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 31.2 bits (71), Expect = 0.43
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETGKPESLKRVENLTGKTVEY 305
LVTGG G +G L G +L+ R + G E + +E L G
Sbjct: 230 LVTGGTGGVGGQIARWLARRG-----APHLLLVSRSGPDADGAGELVAELEAL-GARTTV 283
Query: 306 HEVDILQVSDLREIF 320
D+ +RE+
Sbjct: 284 AACDVTDRESVRELL 298
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 31.0 bits (71), Expect = 0.44
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 18/83 (21%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET--------GKPESLK--- 293
+ +VTG + IG+ L G VV+ + ++ G+ ES
Sbjct: 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTA--RDVEKLRAVEREIVAAGGEAESHACDL 87
Query: 294 ----RVENLTGKTVEYH-EVDIL 311
+ + H D+L
Sbjct: 88 SHSDAIAAFATGVLAAHGRCDVL 110
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 30.9 bits (71), Expect = 0.45
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
M K LVTG + +G + L E+GYN+V+
Sbjct: 1 MEQNKCALVTGSSRGVGKAAAIRLAENGYNIVI 33
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 30.1 bits (68), Expect = 0.45
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 246 FILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
FI+ G + +T++ L + G NV V+ N
Sbjct: 6 FIVC--GHSILAINTILQLNQRGQNVTVISN 34
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 30.9 bits (71), Expect = 0.46
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
K LVTG IG L G V++
Sbjct: 8 KVSLVTGSTRGIGRAIAEKLASAGSTVII 36
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 30.9 bits (71), Expect = 0.51
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
L + K I + G GYIG+ + YNV ++D
Sbjct: 142 LFEEAPKAKTITIIGS-GYIGAELAEAYSNQNYNVNLID 179
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 30.5 bits (70), Expect = 0.51
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEET 286
LVTGG IG V G + N + E
Sbjct: 18 LVTGGTKGIGHAIVEEFAGFGAVIHTCAR--NEYELNEC 54
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 30.7 bits (70), Expect = 0.52
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
+VTG + IG + L + G V + R +T + + ++L G+ V
Sbjct: 9 VVTGASRGIGRGIALQLCKAGATVYITG------RHLDTLR-VVAQEAQSLGGQCVPV-V 60
Query: 308 VDILQVSDLREIFSK 322
D Q S++R +F +
Sbjct: 61 CDSSQESEVRSLFEQ 75
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 30.5 bits (70), Expect = 0.57
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
K +VTG + +G L G N+V+ +
Sbjct: 6 KTAIVTGSSRGLGKAIAWKLGNMGANIVLNGS 37
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 30.5 bits (70), Expect = 0.61
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
M K LVTG + IG + L + G NVVV
Sbjct: 1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVV 33
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.62
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 216 DASLAKKELAW--EAKYGLDKMYLQRD 240
DA+ E W +AK L++ ++
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQS 128
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 30.9 bits (71), Expect = 0.64
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+ N + + V G G IG + L++ V V +
Sbjct: 140 AVPLLENSQTVAVIGA-GPIGMEAIDFLVKMKKTVHVFE 177
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 30.6 bits (68), Expect = 0.65
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 245 KFILVTGGAGYIGSHTVVSLLE-HGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTV 303
K +L+ G+G++ + +L NV V + ++L +
Sbjct: 24 KNVLL-LGSGFVAQPVIDTLAANDDINVTVACRTLANA--------QALAKPSG-----S 69
Query: 304 EYHEVDILQVSDLREIFSK 322
+ +D+ S L ++ +
Sbjct: 70 KAISLDVTDDSALDKVLAD 88
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 30.6 bits (70), Expect = 0.67
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 23/85 (27%)
Query: 173 YNLGTGTGYSVFEMV-KAFSEACKKNIPYEVVGRREGDIASSYC---------------- 215
Y + TG ++V E V KA A +I + G E I +
Sbjct: 243 YVIATGETHTVREFVEKAAKIA-GFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEV 301
Query: 216 -----DASLAKKELAWEAKYGLDKM 235
+ A K+L W+ + D++
Sbjct: 302 DILVGNPEKAMKKLGWKPRTTFDEL 326
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 30.7 bits (70), Expect = 0.68
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+VTG A IG+ G VV +D
Sbjct: 217 VVTGAARGIGATIAEVFARDGATVVAID 244
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 30.2 bits (69), Expect = 0.72
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 20/91 (21%)
Query: 241 MSNP---KFILVTGGAGYIGSHTVVSLLEHGYNVVVV-------DNLVNACRVEETGKPE 290
MS ++TG + IG+ L GY VV++ + + + E
Sbjct: 1 MSLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQE 60
Query: 291 SL---------KRVENLTGKTVE-YHEVDIL 311
+ + + + Y VDIL
Sbjct: 61 PIVLPLDITDCTKADTEIKDIHQKYGAVDIL 91
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 30.2 bits (69), Expect = 0.74
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVDN 276
G + S+L Y VV+++
Sbjct: 7 GGETTAYYLARSMLSRKYGVVIINK 31
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 30.2 bits (69), Expect = 0.75
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN-LVNACRVEETGKPESLKRVENLTGKTV 303
+L+TG IG + + + LV + R E + G
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA--DLEKISLECRAEGALT 60
Query: 304 EYHEVDILQVSDLREIFSK 322
+ DI ++D+R + +
Sbjct: 61 DTITADISDMADVRRLTTH 79
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 30.2 bits (69), Expect = 0.78
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHE 307
+VTG IG G +V+ R + E + + G + E
Sbjct: 35 VVTGAGSGIGRAIAHGYARAGAHVLAWG------RTDGVK--EVADEIADG-GGSAEAVV 85
Query: 308 VDILQVSDLREIFSK 322
D+ + + +
Sbjct: 86 ADLADLEGAANVAEE 100
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 30.6 bits (70), Expect = 0.80
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
M+N + V GG G+IG + SL G +++
Sbjct: 147 QMNNVEHATVVGG-GFIGLEMMESLHHLGIKTTLLE 181
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 30.2 bits (69), Expect = 0.84
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
+ I+V G IG + + G NVV+ N
Sbjct: 9 RTIVVAGAGRDIGRACAIRFAQEGANVVLTYN 40
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 30.2 bits (69), Expect = 0.85
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVV 272
K LVTG + IG +L G VV
Sbjct: 6 KVALVTGASRGIGFEVAHALASKGATVV 33
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 30.2 bits (69), Expect = 0.87
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
K I++ GG +G+ T + N+V+
Sbjct: 12 KVIVIAGGIKNLGALTAKTFALESVNLVL 40
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 30.3 bits (69), Expect = 0.94
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEE 285
G GYIG T + +HG +V+ VD +N +++
Sbjct: 18 GLGYIGLPTSIMFAKHGVDVLGVD--INQQTIDK 49
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 29.9 bits (67), Expect = 0.95
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVV 272
M+ G GY +L G+ ++
Sbjct: 4 MTGTLLSF---GHGYTARVLSRALAPQGWRII 32
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 29.8 bits (68), Expect = 0.99
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 228 AKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
G + +Y Q M K +VTG + IG+ L G+ VV+
Sbjct: 11 VDLGTENLYFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVI 56
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 30.0 bits (67), Expect = 1.00
Identities = 6/52 (11%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 239 RDMSNPKF--ILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNAC-RVEETG 287
+D ++ + + G G +G+ + + +++ ++ R++ G
Sbjct: 4 KDKNDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG 55
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein
structure initiative, center for eukaryotic structural
genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP:
d.23.1.2 PDB: 2q4m_A
Length = 217
Score = 29.6 bits (66), Expect = 1.0
Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 37/182 (20%)
Query: 91 PVGSHPSGDIGEDPNGIPNNLMPYISQVAVG---RRKKLMVFGDDYDTKDGSG------- 140
P GS PSG G+ + Y + + RK + + ++ D +G
Sbjct: 10 PQGSGPSGAPTPQAGGVVVDPK-YCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVK 68
Query: 141 -----VRDYIHIMDLAEGHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFS---- 191
+ D ++D + V L + + ++ + G+ + VK S
Sbjct: 69 EPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDR-WQVFRGGSTDQRDLLYTVKRSSMLQL 127
Query: 192 ----------EACKKNIPYEVVG---RREGDIASSYCDASLA---KKELAWEAKYGLDKM 235
+K + V G R + + DA +A +K G D
Sbjct: 128 KTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNF 187
Query: 236 YL 237
+
Sbjct: 188 SV 189
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 29.9 bits (68), Expect = 1.0
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
K + +TG + IG + G NV +
Sbjct: 7 KTLFITGASRGIGLAIALRAARDGANVAIAA 37
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 29.9 bits (68), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVV 273
++TGGA IG V L + G+ VVV
Sbjct: 15 VITGGARRIGHSIAVRLHQQGFRVVV 40
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 30.1 bits (68), Expect = 1.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 232 LDKMYLQRDMSNPKFILVTGGAGYIGS 258
++ LQ +S LV GGAG IG
Sbjct: 24 ANEKELQSVVSQ-SRFLVLGGAGSIGQ 49
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 29.8 bits (68), Expect = 1.1
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 235 MYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
M ++ K LVTG + IG L E G V+
Sbjct: 1 MSQFMNLEG-KVALVTGASRGIGKAIAELLAERGAKVIG 38
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 29.6 bits (67), Expect = 1.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
K + ++GG+ IG + G NV +V
Sbjct: 10 KTMFISGGSRGIGLAIAKRVAADGANVALVA 40
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 29.8 bits (67), Expect = 1.2
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 225 AWEAKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSL 264
+ Y L + I V+G AG I +H + L
Sbjct: 13 VFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKL 52
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 29.5 bits (67), Expect = 1.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
+ LVTG + IG + L G V V
Sbjct: 29 RIALVTGASRGIGRAIALELAAAGAKVAV 57
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.8 bits (68), Expect = 1.2
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+ + K + V G GYIG + G VV++D
Sbjct: 190 ENKDIKRVAVVGA-GYIGVELAEAFQRKGKEVVLID 224
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.8 bits (68), Expect = 1.2
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+ + + + + GG G IG + +E G V +++
Sbjct: 182 ETNKVEDVTIIGG-GAIGLEMAETFVELGKKVRMIE 216
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.8 bits (68), Expect = 1.3
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+ +LV G GY+ + +L E G + ++
Sbjct: 144 KANQVDKVLVVGA-GYVSLEVLENLYERGLHPTLIH 178
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 29.7 bits (67), Expect = 1.3
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 248 LVTGGAGYIGSHTVVSLLEHG 268
LVTG + L G
Sbjct: 255 LVTGAEEPAAAEAARRLARDG 275
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 29.5 bits (67), Expect = 1.3
Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 226 WEAKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEE 285
+ + L++ + + K ++VTG + IG L + G +VVV + +++
Sbjct: 11 HQHQQPLNEEFRPEMLQG-KKVIVTGASKGIGREMAYHLAKMGAHVVVTA--RSKETLQK 67
Query: 286 TGKPESLKRVENLTGKTVEYHEVDILQVSDLREIFSK 322
L + Y + ++ + ++
Sbjct: 68 VV-----SHCLELGAASAHYIAGTMEDMTFAEQFVAQ 99
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 29.4 bits (67), Expect = 1.3
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 241 MSN-PKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
M +L+TG + IG T L GY V ++
Sbjct: 1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMA 36
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 29.4 bits (67), Expect = 1.3
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVV-------DNLVNACRVEETGKPESLK---- 293
K ++TG + IG +L GY + + + + + E+ +
Sbjct: 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVS 62
Query: 294 ---RVENLTGKTVE-YHEVDIL 311
VE + K +E + +VD++
Sbjct: 63 KAESVEEFSKKVLERFGDVDVV 84
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.8 bits (68), Expect = 1.3
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+ + +++ GG GYIG + G NV ++
Sbjct: 144 EKYKVENVVIIGG-GYIGIEMAEAFAAQGKNVTMIV 178
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 29.4 bits (67), Expect = 1.4
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 221 KKELAWEAKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVV 272
+ + + + + +VTG + IG + L G V+
Sbjct: 6 HHHMGTLEAQTQGPGSMDKTLDK-QVAIVTGASRGIGRAIALELARRGAMVI 56
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 29.4 bits (67), Expect = 1.4
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 228 AKYGLDKMYLQRDMSNPKFI----LVTGGAGYIGSHTVVSLLEHGYNVVV 273
G + +Y Q M++ VTGG+ IG+ L G V +
Sbjct: 11 VDLGTENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVAL 60
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
++V G GYIG + + G V V+D
Sbjct: 145 VDPEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVID 179
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 29.4 bits (67), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVV 273
++VTG + IG +SL + G V+V
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLV 30
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 29.9 bits (67), Expect = 1.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 225 AWEAKYGLDKMY---LQRDMSNP-----KFILVTG-GAGYIGSHTVVSLLEHGYNVVV 273
WE L +Y L+ + K L+TG GAG IG+ + LL G V+V
Sbjct: 625 NWEYSKKLTGIYLDGLEAAARSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIV 682
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.5 bits (67), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
D P+ V GG G+IG V +L E G V +V+
Sbjct: 183 DEKKPRHATVIGG-GFIGVEMVENLRERGIEVTLVE 217
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 29.6 bits (67), Expect = 1.5
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 228 AKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETG 287
A + ++ +LVTG G +G V L + GY+VV TG
Sbjct: 135 AALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVAS-----------TG 183
Query: 288 KPESLKRVENLTGKTV 303
E+ ++ L V
Sbjct: 184 NREAADYLKQLGASEV 199
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 29.0 bits (66), Expect = 1.5
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE-YH 306
LV + IG L + G V + N ++ +G + + E
Sbjct: 23 LVLAASRGIGRAVADVLSQEGAEVTICAR--NEELLKRSGHRYVVCDLRKDLDLLFEKVK 80
Query: 307 EVDIL 311
EVDIL
Sbjct: 81 EVDIL 85
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 29.2 bits (66), Expect = 1.6
Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 52/187 (27%)
Query: 136 KDG---SG----VRDYIHI--MDLAEGHVTALDKLLGGKSQAGFKA--------YNLGTG 178
KD +G +R + I +D A G V A F A + +G
Sbjct: 42 KDALAITGKGKIIRHFPMIPGIDFA-GTVHA-------SEDPRFHAGQEVLLTGWGVGEN 93
Query: 179 T--GYSVFEMVKAFSEACKKNIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKMY 236
G + E + + +P + R I ++ A L + +
Sbjct: 94 HWGGLA--ERARVKGDWLVA-LPAGLSSRNAMIIGTAGFTAMLC-----------VMALE 139
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVE 296
++VTG +G +GS V L + GY V V +G+ + ++
Sbjct: 140 DAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAV-----------SGRESTHGYLK 188
Query: 297 NLTGKTV 303
+L +
Sbjct: 189 SLGANRI 195
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.6 bits (66), Expect = 1.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 225 AWEAKYGLDKMY---LQRDMSNP-----KFILVTG-GAGYIGSHTVVSLLEHGYNVVV 273
W+ L ++ L++ N K++L+TG G G IG+ + LL+ G VVV
Sbjct: 648 DWKYDRQLSSLFLDGLEKAAFNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVV 705
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 29.5 bits (66), Expect = 1.7
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 39 PYGKSKYFVEEILKDLASFKQKLQSLQSSVTQI 71
YG + ++ +LK +F+ + V +
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDV 274
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 29.4 bits (67), Expect = 1.7
Identities = 34/177 (19%), Positives = 50/177 (28%), Gaps = 62/177 (35%)
Query: 138 GSGVRDYIHIMDLAE-GHVTALDKLLGGKSQAGFKAYNLGTGTGYSVFEMVKAFSEACKK 196
G+ V D I E +VT G S A + N T Y V+ +KA A K+
Sbjct: 117 GTTVDDMDLIHQ--ETDYVT-------GISPAFGSSGNPSPVTAYGVYRGMKA---AAKE 164
Query: 197 NIPYEVVGRREGDIASSYCDASLAKKELAWEAKYGLDKMYLQRDMSNPKFILVTGGAGYI 256
++ SL ++ +Q G G +
Sbjct: 165 ----------------AFGSDSLEGLAVS-----------VQ-------------GLGNV 184
Query: 257 GSHTVVSLLEHGYNVVVVDNLVNACR--VEETGKPESLKRVENLTGKTVEYHEVDIL 311
L G +VV D A V E G + + + DI
Sbjct: 185 AKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG-------ADAVAPNAIYGVTCDIF 234
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 29.1 bits (66), Expect = 1.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
K LVTG IG L + +V+ +
Sbjct: 45 KVALVTGAGRGIGREIAKMLAKSVSHVICIS 75
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 29.2 bits (66), Expect = 1.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 241 MSNPKFILVTGGAGYIGSHTV 261
M P + VTG AG IG +
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLL 21
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A
{Escherichia coli} SCOP: c.2.1.2
Length = 372
Score = 29.2 bits (66), Expect = 1.8
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 216 DASLAKKELAWEAKYGLDKM 235
D + A ++L W+ + L +M
Sbjct: 322 DPTKAHEKLGWKPEITLREM 341
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 29.5 bits (67), Expect = 1.8
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVDN 276
GAG +G +L+ ++ +VD
Sbjct: 10 GAGQVGGTLAENLVGENNDITIVDK 34
Score = 27.2 bits (61), Expect = 7.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
LQR + I++ GG G IG+ + LE Y+V +++
Sbjct: 228 LQRLEKPYRRIMIVGG-GNIGAS-LAKRLEQTYSVKLIER 265
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 29.2 bits (66), Expect = 1.8
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 228 AKYGLDKMYLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETG 287
A + ++ +LVTG G +GS V L + GY V TG
Sbjct: 134 AALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEAS-----------TG 182
Query: 288 KPESLKRVENLTGKTV 303
K + L K V
Sbjct: 183 KAAEHDYLRVLGAKEV 198
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 28.8 bits (64), Expect = 1.9
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 241 MSNPK-FILVTGGAGYIGSH--TVVSLLE-HGYNVVVVDN 276
M F+LV A + + LLE G+ V V+
Sbjct: 1 MERKHHFVLVHN-AYHGAWIWYKLKPLLESAGHRVTAVEL 39
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 29.1 bits (66), Expect = 1.9
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVD-NLVNACRVEETGKPESLKRVENLTGKTVEYHEVDI 310
G G +G E G ++V D + G + + V D+
Sbjct: 182 GLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALG-------HTAVALEDVLSTPCDV 234
Query: 311 L 311
Sbjct: 235 F 235
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 29.0 bits (65), Expect = 2.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+ +TG + IG + + G N+V+
Sbjct: 46 CTVFITGASRGIGKAIALKAAKDGANIVIAA 76
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 28.8 bits (65), Expect = 2.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVD 275
G+G +G + G+ V + D
Sbjct: 13 GSGLVGRSWAMLFASGGFRVKLYD 36
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 28.8 bits (64), Expect = 2.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 241 MSNPKFILVTGGAGYIGSH--TVVSLLE-HGYNVVVVD 275
F+LV A + +V+L+ G+NV +D
Sbjct: 10 FVKKHFVLVHA-AFHGAWCWYKIVALMRSSGHNVTALD 46
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 28.7 bits (64), Expect = 2.3
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 230 YG-----LDKMYLQRDMSNPK--FILVTGGAGYIGS-----HTVVSLLEHGYNVVVVD 275
YG +D ++ +N F+ V GG V L+ GY V V+D
Sbjct: 63 YGEGRQLVD-VFYSEKTTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMD 119
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 28.7 bits (65), Expect = 2.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 252 GAGYIG--SHTVVSLLEHGYNVVVVDNLVNACRVE 284
GAGY+G + +V++ + V VVD VN R+
Sbjct: 12 GAGYVGGPTCSVIAHMCPEIRVTVVD--VNESRIN 44
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 28.8 bits (65), Expect = 2.5
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 225 AWEAKYGLDKMYLQRDMSNP-KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRV 283
AWEA + D++ + + + IL+ GGAG +G V + ++ V+
Sbjct: 154 AWEAFF--DRLDVNKPVPGAAPAILIVGGAGGVG-SIAVQIARQRTDLTVIAT------- 203
Query: 284 EETGKPESLKRVENLTG--KTVEYHEVDILQVSDL 316
+PE+ + V++L G +++ + +V+ L
Sbjct: 204 --ASRPETQEWVKSL-GAHHVIDHSKPLAAEVAAL 235
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer
alpha-beta-alpha SA topology, ENTB homolog, cshase
homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Length = 208
Score = 28.6 bits (64), Expect = 2.5
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 242 SNPKFILVTGGAGYIG-SHTVVSLLEHGYNVVVV 274
+ K +++ G + + +S +E G++V VV
Sbjct: 103 TGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVV 136
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 28.8 bits (65), Expect = 2.6
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 216 DASLAKKELAWEAKYGLDKM 235
D + AK++L W+ + D++
Sbjct: 336 DCTKAKQKLNWKPRVAFDEL 355
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB:
3o90_A 3o91_A* 3o92_A* 3o93_A*
Length = 211
Score = 28.5 bits (64), Expect = 2.8
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 259 HTVVSLLEHGYNVVVVDNLVNACR-VEETGKPESLKRVENLTGKTV 303
HT + GY++ +V A + +L +N G +
Sbjct: 159 HTAIDAYNLGYDIEIV---KPAVASIWPENHQFALGHFKNTLGAKL 201
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 27.5 bits (62), Expect = 3.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 240 DMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEE 285
D+ N +LV G G +GS LL +VV++ + RV+E
Sbjct: 5 DICNH-ALLV--GYGRVGSLLGEKLLASDIPLVVIET--SRTRVDE 45
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 27.9 bits (63), Expect = 3.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVV 273
L TG IG + L G +VVV
Sbjct: 25 LTTGAGRGIGRGIAIELGRRGASVVV 50
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 28.0 bits (63), Expect = 4.2
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVV 274
+ +TG G E G+++V+
Sbjct: 22 STLFITGATSGFGEACARRFAEAGWSLVLT 51
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A
{Acinetobacter baumannii} PDB: 2wta_A*
Length = 235
Score = 27.9 bits (62), Expect = 4.3
Identities = 3/50 (6%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 259 HTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVEYHEV 308
T + ++ G+ +V+++ ++ + ++ ++ ++
Sbjct: 183 WTALDAVKQGFKTLVIEDAC-KGIDLNGSLEQAWQTMQQQGVVRIQSTDL 231
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 27.5 bits (62), Expect = 4.8
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 245 KFILVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKTVE 304
I++TG + +G+ G + + L V N V
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLT-----GRSESK------LSTVTNCLSNNVG 50
Query: 305 YHEVDILQVSDLREIFSK 322
Y D+ ++ ++F +
Sbjct: 51 YRARDLASHQEVEQLFEQ 68
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 27.7 bits (62), Expect = 5.2
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLE---HGYNVVVVDNLV 278
P + VTG AG I + + G + V+ L+
Sbjct: 2 AKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL 42
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase,
resistance to pyrazinamide, hydrolase; 2.20A
{Mycobacterium tuberculosis} PDB: 3pl1_A
Length = 186
Score = 27.2 bits (61), Expect = 5.4
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 259 HTVVSLLEHGYNVVVVDNLVNACR 282
T + +G V LV+
Sbjct: 141 QTAEDAVRNGLATRV---LVDLTA 161
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 27.5 bits (62), Expect = 5.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVV 273
LVTG IG+ V L G VVV
Sbjct: 22 LVTGSGRGIGAAVAVHLGRLGAKVVV 47
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.9 bits (62), Expect = 5.5
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACR--VEETGKPESLKRVENLTGKTVEY 305
++TGG G G L G LV R + + ++ G V
Sbjct: 1888 VITGGLGGFGLQLAQWLRLRG-----AQKLVLTSRSGIRTGYQARQVREWRRQ-GVQVLV 1941
Query: 306 HEVDILQVSDLREIF 320
+ + R +
Sbjct: 1942 STSNASSLDGARSLI 1956
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic;
2.68A {Leishmania infantum}
Length = 227
Score = 27.4 bits (61), Expect = 5.8
Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 259 HTVVSLLEHGYNVVVVDNLVNACR-VEETGKPESLKRVENLTGKTVEYHEV 308
T + ++G++VV+ L + V++ +++ ++ +
Sbjct: 173 FTAMDARKNGFSVVL---LEDLTAAVDDAAWSARTAELKDAGVVLLKSSAL 220
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 27.8 bits (61), Expect = 5.9
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 236 YLQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
P + + G G + + L G+ V+ +
Sbjct: 167 LPPEPGPFPGIVDMFGTGGGLLEYRASLLAGKGFAVMALA 206
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A
{Escherichia coli}
Length = 287
Score = 27.4 bits (61), Expect = 5.9
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 247 ILVTGGAGYIG-SHTVVSLLEHGYNVVVV 274
+++TG +IG T +V
Sbjct: 148 LIITGVYAHIGCMTTATDAFMRDIKPFMV 176
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 27.5 bits (62), Expect = 6.3
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+++TG G +G L Y++ D
Sbjct: 8 VIITGANGQLGKQLQEELNPEEYDIYPFD 36
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, STRU genomics of pathogenic protozoa
consortium, SGPP; 2.00A {Trypanosoma cruzi}
Length = 204
Score = 27.2 bits (60), Expect = 6.4
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 242 SNPKFILVTGGAGYIG-SHTVVSLLEHGYNVVVVDNLVNACRVEE 285
+ +++ G ++ T +LL+ VV+ + + +
Sbjct: 108 PEVEQVVLWGFETHVCILQTAAALLDMKKKVVIAVDGCGSQSQGD 152
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 27.1 bits (61), Expect = 7.0
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 247 ILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
IL+TG G +G L V+ D
Sbjct: 15 ILITGANGQLGREIQKQLKGKNVEVIPTD 43
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme,
phenazine pathway, hydrolase; HET: BOG; 1.50A
{Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A*
3r77_A*
Length = 207
Score = 26.9 bits (60), Expect = 7.1
Identities = 4/29 (13%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 247 ILVTGGAGYIG-SHTVVSLLEHGYNVVVV 274
+++ G ++G + V + +V
Sbjct: 145 LVLCGVYAHVGVLISTVDAYSNDIQPFLV 173
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 27.1 bits (61), Expect = 7.1
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVDNLVNACRVEETGKPESLKRVENLTGKT-VEYH 306
LVTG IG SL+ G NV++ V ET +K + ++
Sbjct: 14 LVTGSTAGIGKAIATSLVAEGANVLINGR--REENVNET-----IKEIRAQYPDAILQPV 66
Query: 307 EVDILQVSDLREIFSK 322
D+ +++ K
Sbjct: 67 VADLGTEQGCQDVIEK 82
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 27.5 bits (62), Expect = 7.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 248 LVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
V G GYIG L + G NV +++
Sbjct: 155 AVVIGGGYIGLEAAAVLTKFGVNVTLLE 182
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for structural
GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Length = 192
Score = 26.7 bits (60), Expect = 7.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 231 GLDKMYLQRDMSNPKFIL-VTGGAGYIGS--HTVVSLLEHGYNVVVVD 275
G DK++ ++ VTG IG+ TV +L++ Y VV+
Sbjct: 2 GSDKIHHHHHH----MVIGVTGK---IGTGKSTVCEILKNKYGAHVVN 42
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces
cerevisiae} PDB: 2h0r_A
Length = 216
Score = 27.1 bits (60), Expect = 7.4
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 247 ILVTGGAG-YIGSHTVVSLLEHGYNVVVVDNLVNACR 282
+ + G A Y T +S E GY V L++ R
Sbjct: 157 VYIVGVALEYXVKATAISAAELGYKTTV---LLDYTR 190
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 27.2 bits (60), Expect = 8.1
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 242 SNPKFILVTGGAGYIGSH--TVVSLLE-HGYNVVVVD 275
F+LV G + LLE G+ V VD
Sbjct: 9 QQKHFVLVHG-GCLGAWIWYKLKPLLESAGHKVTAVD 44
>2y2m_A PBP1B, penicillin-binding protein 1B; transferase, infection, cell
WALL, peptidoglycan, inhibitor; HET: E08; 1.62A
{Streptococcus pneumoniae} PDB: 2y2g_A* 2y2h_A* 2y2j_A*
2y2k_A* 2y2l_A* 2y2i_A* 2y2n_A* 2y2o_A* 2y2p_A* 2y2q_A*
2uwy_A* 2xd1_A* 2bg1_A 2xd5_A* 2uwx_A* 2fff_B
Length = 494
Score = 27.5 bits (61), Expect = 8.1
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 175 LGTGTGYSVFEMVKAFS 191
+G G +V + +
Sbjct: 259 MGGGIEVTVAQHTNGYQ 275
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA
domain, regula subunit of DDK, CDC7, phosphorylation,
nuclear; 2.40A {Saccharomyces cerevisiae}
Length = 134
Score = 26.6 bits (58), Expect = 8.1
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 42 KSKYFVEEILKDLASFKQKLQSLQSSVTQIWLNSVHRSDWHIISLRYFNPVGSHPSGDI 100
+ Y ++ K K+ +L + +TQ + +V +I+ R + DI
Sbjct: 20 MNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVT----IVITRRSVENIYLLKDTDI 74
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 26.9 bits (60), Expect = 8.6
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 241 MSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVDN 276
MS + +V GAG +G + L G + V+
Sbjct: 1 MSLTRICIV--GAGAVGGYLGARLALAGEAINVLAR 34
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 27.2 bits (61), Expect = 8.8
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 237 LQRDMSNPKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
+Q + +L+ GG G IG + G +V +V+
Sbjct: 138 IQAGLRPQSRLLIVGG-GVIGLELAATARTAGVHVSLVE 175
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 27.0 bits (60), Expect = 9.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 252 GAGYIGSHTVVSLLEHGYNVVVVD 275
G G +G T + E G+ V+V++
Sbjct: 11 GGGPVGLATAWQVAERGHRVLVLE 34
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium
smegmatis} PDB: 2we7_A
Length = 386
Score = 27.1 bits (60), Expect = 9.3
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 244 PKFILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
P+ ++ GA + GY V V D
Sbjct: 203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCD 234
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 26.9 bits (60), Expect = 9.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 243 NPKF--ILVTGGAGYIGSHTVVSLLEHGYNVVVVD 275
N I++ GG G +G L GY + ++D
Sbjct: 18 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILD 52
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center
for structural genomics structure initiative; 2.30A
{Alkaliphilus metalliredigens}
Length = 204
Score = 26.5 bits (59), Expect = 9.9
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 259 HTVVSLLEHGYNVVVVDNLVNA 280
T L + Y V+ + + +
Sbjct: 136 STATDALANAYKVITLSDGTAS 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,185,976
Number of extensions: 319506
Number of successful extensions: 1568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1421
Number of HSP's successfully gapped: 417
Length of query: 322
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 228
Effective length of database: 4,077,219
Effective search space: 929605932
Effective search space used: 929605932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)