BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14684
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LZ1|A Chain A, Solution Nmr Structure Of The Dna-Binding Domain Of Human
Nf-E2- Related Factor 2, Northeast Structural Genomics
Consortium (Nesg) Target Hr3520o
Length = 90
Score = 97.1 bits (240), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 169 EEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVA 228
E +TRDE +A+AL+IP PV IINLP+ +FNE +SK +E QL+LIRDIRRRGKNKVA
Sbjct: 18 EAHLTRDELRAKALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVA 77
Query: 229 AQNCRKRKLDQIL 241
AQNCRKRKL+ I+
Sbjct: 78 AQNCRKRKLENIV 90
>pdb|2KZ5|A Chain A, Solution Nmr Structure Of Transcription Factor Nf-E2
Subunit's Dna Binding Domain From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4653b
Length = 91
Score = 94.0 bits (232), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 61/72 (84%)
Query: 170 EQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAA 229
E +RDE++A A+ IP P + I+NLP+D+FNE L++Y L+E+QL+L+RDIRRRGKNKVAA
Sbjct: 19 EAGSRDERRALAMKIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAA 78
Query: 230 QNCRKRKLDQIL 241
QN RKRKL+ I+
Sbjct: 79 QNYRKRKLETIV 90
>pdb|1SKN|P Chain P, The Binding Domain Of Skn-1 In Complex With Dna: A New
Dna- Binding Motif
Length = 92
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 164 ARKSEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRG 223
R+S++EQ+ D + +P+ I + + E + L LSE Q LIR IRRRG
Sbjct: 15 GRQSKDEQLASDNE------LPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRG 68
Query: 224 KNKVAAQNCRKRKLD 238
KNKVAA+ CR+R+ D
Sbjct: 69 KNKVAARTCRQRRTD 83
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 220 RRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279
R+R +N++AA RKRKL++I L ++VK +K ++ L+ + ++ Q +QL
Sbjct: 5 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKA-------QNSELASTANMLREQVAQLK 57
Query: 280 KHVFN 284
+ V N
Sbjct: 58 QKVMN 62
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 220 RRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279
R+R +N++AA RKRKL++I L ++VK +K ++ L+ + ++ Q +QL
Sbjct: 4 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKA-------QNSELASTANMLREQVAQLK 56
Query: 280 KHVFN 284
+ V N
Sbjct: 57 QKVMN 61
>pdb|1S9K|E Chain E, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2
Arre1 Site
Length = 52
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 220 RRRGKNKVAAQNCRKRKLDQILSLADEVKQMK 251
R+R +N++AA CRKRKL++I L ++VK +K
Sbjct: 1 RKRMRNRIAASKCRKRKLERIARLEEKVKTLK 32
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 220 RRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278
R+R +N++AA RKRKL++I L ++VK +K ++ L+ + ++ Q +QL
Sbjct: 5 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKA-------QNSELASTANMLREQVAQL 56
>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
pdb|2WTY|B Chain B, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
Length = 97
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 189 NDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVK 248
+ ++++ + E N L + ++ ++ ++ RR KN+ AQ+CR +++ Q L +E
Sbjct: 5 DQLVSMSVRELNRHLRGF--TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENE-- 60
Query: 249 QMKDKKRHLMQEHEYLSQECSRV 271
K L+Q+ E L QE SR+
Sbjct: 61 -----KTQLIQQVEQLKQEVSRL 78
>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 90
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 189 NDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVK 248
+ ++++ + E N L + ++ ++ ++ RR KN+ AQ+CR +++ Q L +E
Sbjct: 1 DQLVSMSVRELNRHLRGF--TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENE-- 56
Query: 249 QMKDKKRHLMQEHEYLSQECSRV 271
K L+Q+ E L QE SR+
Sbjct: 57 -----KTQLIQQVEQLKQEVSRL 74
>pdb|2WT7|A Chain A, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 63
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 221 RRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQE 267
RR +NK+AA CR R+ + +L E Q++D+K L E L +E
Sbjct: 6 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKE 52
>pdb|1S9K|D Chain D, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2
Arre1 Site
Length = 53
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 221 RRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQE 267
RR +NK+AA CR R+ + +L E Q++D+K L E L +E
Sbjct: 4 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKE 50
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 221 RRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277
+R +N AA+ R RKL ++ KQ++DK L+ ++ +L E +R+K +
Sbjct: 13 KRARNTEAARRSRARKLQRM-------KQLEDKVEELLSKNYHLENEVARLKKLVGE 62
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 221 RRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277
+R +N AA+ R RKL ++ KQ++DK L+ ++ +L E +R+K +
Sbjct: 12 KRARNTEAARRSRARKLQRM-------KQLEDKVEELLSKNYHLENEVARLKKLVGE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,262,991
Number of Sequences: 62578
Number of extensions: 318053
Number of successful extensions: 897
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 28
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)