Query psy14684
Match_columns 357
No_of_seqs 185 out of 333
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 18:02:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3863|consensus 100.0 4.3E-58 9.3E-63 470.0 20.0 310 3-331 274-601 (604)
2 PF03131 bZIP_Maf: bZIP Maf tr 99.9 2.2E-27 4.8E-32 192.3 -6.0 92 186-279 1-92 (92)
3 KOG4196|consensus 99.9 3.3E-23 7.1E-28 179.7 13.7 113 184-299 22-134 (135)
4 smart00338 BRLZ basic region l 99.3 1.6E-11 3.4E-16 93.4 8.5 61 216-276 4-64 (65)
5 PF00170 bZIP_1: bZIP transcri 99.1 2.6E-10 5.6E-15 86.7 7.9 60 216-275 4-63 (64)
6 KOG0837|consensus 99.0 8.2E-10 1.8E-14 106.0 8.7 71 209-279 198-268 (279)
7 KOG4005|consensus 98.9 7.5E-09 1.6E-13 98.8 9.4 56 207-266 63-118 (292)
8 KOG0709|consensus 98.8 1.1E-08 2.4E-13 104.3 8.3 99 169-283 218-317 (472)
9 PF07716 bZIP_2: Basic region 98.8 1.9E-08 4.2E-13 74.6 7.1 49 218-267 6-54 (54)
10 KOG4571|consensus 98.1 1.4E-05 3.1E-10 78.1 8.8 62 219-280 229-290 (294)
11 KOG3584|consensus 97.6 7.4E-05 1.6E-09 73.6 5.7 52 211-263 286-337 (348)
12 KOG4343|consensus 97.5 0.00031 6.7E-09 73.8 7.6 62 211-272 275-336 (655)
13 KOG3119|consensus 97.2 0.0013 2.9E-08 63.2 7.8 61 219-279 196-256 (269)
14 KOG1414|consensus 95.4 0.0014 3E-08 65.9 -3.4 76 208-286 147-226 (395)
15 PF06005 DUF904: Protein of un 94.8 0.19 4.1E-06 40.2 7.8 46 237-282 17-62 (72)
16 PRK00888 ftsB cell division pr 93.9 0.32 6.9E-06 41.1 7.7 73 239-326 28-102 (105)
17 PF05266 DUF724: Protein of un 92.7 1.4 3E-05 41.0 10.6 71 211-281 103-174 (190)
18 PLN03217 transcription factor 92.2 0.42 9.1E-06 40.3 5.9 62 185-260 16-78 (93)
19 PRK13169 DNA replication intia 92.1 0.55 1.2E-05 40.5 6.7 46 238-283 22-83 (110)
20 PF06156 DUF972: Protein of un 91.6 0.66 1.4E-05 39.7 6.6 30 240-269 24-53 (107)
21 PRK04406 hypothetical protein; 90.4 2.9 6.3E-05 33.7 8.9 46 238-283 11-56 (75)
22 PF07200 Mod_r: Modifier of ru 89.8 2 4.4E-05 37.1 8.2 15 191-205 1-15 (150)
23 PF05377 FlaC_arch: Flagella a 89.8 1.1 2.5E-05 34.6 5.8 40 239-278 1-40 (55)
24 PF05266 DUF724: Protein of un 89.8 1.8 3.9E-05 40.3 8.2 82 195-278 67-150 (190)
25 PF06156 DUF972: Protein of un 89.8 1.2 2.7E-05 38.0 6.7 42 239-280 16-57 (107)
26 PRK15422 septal ring assembly 89.7 1.5 3.3E-05 36.2 6.9 40 237-276 17-63 (79)
27 PF05600 DUF773: Protein of un 89.1 3.1 6.7E-05 43.9 10.4 105 186-295 397-504 (507)
28 PF13851 GAS: Growth-arrest sp 88.8 4 8.7E-05 38.0 9.9 59 223-285 82-140 (201)
29 COG3074 Uncharacterized protei 88.6 2.2 4.7E-05 35.0 6.9 44 237-280 17-60 (79)
30 PRK10884 SH3 domain-containing 88.6 4.9 0.00011 37.8 10.3 37 243-279 130-166 (206)
31 PF10226 DUF2216: Uncharacteri 88.4 2.6 5.6E-05 39.9 8.3 68 189-264 3-74 (195)
32 PF06005 DUF904: Protein of un 87.5 3.6 7.7E-05 33.0 7.5 41 240-280 27-67 (72)
33 PF04102 SlyX: SlyX; InterPro 87.2 3.5 7.5E-05 32.3 7.2 46 238-283 4-49 (69)
34 KOG3003|consensus 87.2 7.3 0.00016 37.9 10.7 108 200-314 87-212 (236)
35 PRK13169 DNA replication intia 87.1 2.3 5E-05 36.7 6.7 40 239-278 16-55 (110)
36 PF02183 HALZ: Homeobox associ 87.1 1.9 4.2E-05 31.7 5.3 37 243-279 3-39 (45)
37 PF09766 FimP: Fms-interacting 87.0 8.3 0.00018 38.8 11.5 95 168-279 41-142 (355)
38 PF04977 DivIC: Septum formati 86.7 4.7 0.0001 30.7 7.6 32 240-271 19-50 (80)
39 PRK04325 hypothetical protein; 86.6 6.6 0.00014 31.4 8.6 46 238-283 9-54 (74)
40 PRK00295 hypothetical protein; 86.0 4.9 0.00011 31.7 7.4 46 238-283 5-50 (68)
41 PF13801 Metal_resist: Heavy-m 85.1 16 0.00034 28.9 10.1 27 199-225 33-59 (125)
42 PF08172 CASP_C: CASP C termin 84.9 4 8.6E-05 39.5 7.8 50 227-278 84-133 (248)
43 PRK00736 hypothetical protein; 84.4 6.4 0.00014 31.1 7.4 46 238-283 5-50 (68)
44 PF02403 Seryl_tRNA_N: Seryl-t 84.3 4.5 9.7E-05 33.2 6.9 32 237-268 28-59 (108)
45 PRK02119 hypothetical protein; 84.3 6.2 0.00013 31.6 7.4 46 238-283 9-54 (73)
46 PRK02793 phi X174 lysis protei 84.0 11 0.00025 30.0 8.7 46 238-283 8-53 (72)
47 PRK11637 AmiB activator; Provi 83.9 9.9 0.00022 38.4 10.4 44 240-283 84-127 (428)
48 PF11559 ADIP: Afadin- and alp 83.8 23 0.00049 30.8 11.4 94 182-279 27-121 (151)
49 PF02183 HALZ: Homeobox associ 83.3 5.9 0.00013 29.2 6.3 36 241-276 8-43 (45)
50 TIGR02231 conserved hypothetic 83.0 17 0.00037 37.7 12.0 41 243-283 129-169 (525)
51 PF00170 bZIP_1: bZIP transcri 82.4 6.9 0.00015 29.7 6.7 38 245-282 26-63 (64)
52 KOG1414|consensus 82.3 0.32 6.9E-06 49.3 -0.8 51 223-273 291-342 (395)
53 KOG3863|consensus 81.9 0.48 1E-05 51.0 0.3 64 176-239 533-596 (604)
54 PRK10869 recombination and rep 81.5 11 0.00025 39.8 10.2 55 234-288 330-385 (553)
55 TIGR02894 DNA_bind_RsfA transc 81.2 12 0.00027 34.5 9.0 41 241-281 107-147 (161)
56 PF14389 Lzipper-MIP1: Leucine 81.1 8.3 0.00018 31.7 7.2 32 253-284 55-86 (88)
57 PRK11637 AmiB activator; Provi 80.8 21 0.00045 36.2 11.4 48 237-284 88-135 (428)
58 PRK10884 SH3 domain-containing 80.7 22 0.00047 33.6 10.7 38 238-275 132-169 (206)
59 PF04795 PAPA-1: PAPA-1-like c 80.7 6.4 0.00014 32.5 6.4 79 229-315 7-85 (89)
60 PF12824 MRP-L20: Mitochondria 80.5 6.1 0.00013 36.1 6.8 56 191-246 67-130 (164)
61 PRK10455 periplasmic protein; 80.3 38 0.00083 30.8 11.8 23 201-223 50-72 (161)
62 PF10146 zf-C4H2: Zinc finger- 79.9 7.8 0.00017 37.2 7.6 60 238-297 60-124 (230)
63 PF11932 DUF3450: Protein of u 79.8 18 0.00039 34.1 9.9 43 233-275 51-93 (251)
64 KOG4196|consensus 79.7 20 0.00043 32.4 9.5 81 206-288 22-116 (135)
65 PF08317 Spc7: Spc7 kinetochor 79.5 20 0.00043 35.3 10.6 12 36-47 18-29 (325)
66 PRK14127 cell division protein 79.5 8.3 0.00018 33.4 6.9 28 183-215 3-30 (109)
67 PF02344 Myc-LZ: Myc leucine z 78.9 5.8 0.00012 27.9 4.7 27 254-280 3-29 (32)
68 COG2433 Uncharacterized conser 78.5 7.7 0.00017 42.4 7.8 22 171-192 360-381 (652)
69 COG1579 Zn-ribbon protein, pos 78.5 22 0.00049 34.5 10.3 90 195-287 53-152 (239)
70 PF05529 Bap31: B-cell recepto 78.3 15 0.00032 33.2 8.6 38 243-280 152-189 (192)
71 PTZ00096 40S ribosomal protein 78.3 2.3 5E-05 38.5 3.3 37 185-221 19-62 (143)
72 PF14662 CCDC155: Coiled-coil 78.2 22 0.00047 33.8 9.8 85 197-283 53-140 (193)
73 PLN02678 seryl-tRNA synthetase 77.9 13 0.00029 38.8 9.1 32 248-279 74-105 (448)
74 PRK11546 zraP zinc resistance 77.9 26 0.00057 31.7 9.9 16 207-222 43-58 (143)
75 COG1340 Uncharacterized archae 77.7 22 0.00047 35.7 10.2 81 210-290 19-100 (294)
76 TIGR02894 DNA_bind_RsfA transc 77.6 24 0.00051 32.7 9.7 23 199-223 51-73 (161)
77 PRK00846 hypothetical protein; 77.3 25 0.00055 28.8 8.8 44 238-281 13-56 (77)
78 PF13747 DUF4164: Domain of un 76.6 29 0.00062 28.8 9.1 58 216-273 10-67 (89)
79 COG2433 Uncharacterized conser 76.6 8.8 0.00019 41.9 7.6 22 168-189 318-341 (652)
80 PF07407 Seadorna_VP6: Seadorn 76.5 4.5 9.7E-05 41.5 5.1 28 245-272 32-59 (420)
81 PF04880 NUDE_C: NUDE protein, 76.4 2.2 4.7E-05 39.3 2.7 35 237-275 13-47 (166)
82 PF09730 BicD: Microtubule-ass 76.1 15 0.00033 40.7 9.4 49 237-285 418-466 (717)
83 TIGR01062 parC_Gneg DNA topois 76.1 15 0.00032 40.8 9.3 116 189-315 383-512 (735)
84 PF11559 ADIP: Afadin- and alp 75.9 32 0.0007 29.9 9.7 40 237-276 65-104 (151)
85 PF09726 Macoilin: Transmembra 75.1 10 0.00022 41.7 7.8 8 230-237 541-548 (697)
86 PF09789 DUF2353: Uncharacteri 75.0 19 0.00041 36.4 9.0 60 235-294 130-189 (319)
87 TIGR02449 conserved hypothetic 74.9 21 0.00045 28.5 7.4 32 248-279 17-48 (65)
88 TIGR03752 conj_TIGR03752 integ 74.9 8.2 0.00018 40.9 6.7 79 196-282 54-139 (472)
89 PRK12750 cpxP periplasmic repr 74.3 43 0.00093 30.7 10.5 29 201-229 46-74 (170)
90 KOG4005|consensus 74.3 11 0.00024 37.3 6.9 41 239-279 98-145 (292)
91 PF05278 PEARLI-4: Arabidopsis 73.8 42 0.00091 33.4 10.9 35 245-279 207-241 (269)
92 PF07813 LTXXQ: LTXXQ motif fa 73.6 16 0.00035 28.5 6.7 31 200-230 7-37 (100)
93 KOG0898|consensus 73.5 3.8 8.3E-05 37.3 3.5 35 185-221 26-69 (152)
94 PF04728 LPP: Lipoprotein leuc 73.5 27 0.00059 27.2 7.6 37 239-275 4-40 (56)
95 PF07106 TBPIP: Tat binding pr 73.5 8.4 0.00018 34.2 5.6 13 285-298 134-146 (169)
96 PF10186 Atg14: UV radiation r 73.2 64 0.0014 30.0 11.6 34 250-283 124-157 (302)
97 smart00338 BRLZ basic region l 72.8 17 0.00037 27.5 6.4 36 245-280 26-61 (65)
98 PRK11677 hypothetical protein; 72.8 18 0.00039 32.3 7.4 50 237-286 28-77 (134)
99 PF10473 CENP-F_leu_zip: Leuci 72.6 47 0.001 29.9 10.0 42 241-282 62-103 (140)
100 PF06295 DUF1043: Protein of u 72.4 23 0.00051 30.7 8.0 51 237-287 24-74 (128)
101 PRK13923 putative spore coat p 72.3 21 0.00045 33.3 8.0 79 198-281 51-147 (170)
102 PRK00295 hypothetical protein; 72.3 23 0.0005 27.9 7.2 41 239-279 13-53 (68)
103 PRK13182 racA polar chromosome 72.2 37 0.00081 31.3 9.6 19 265-283 124-142 (175)
104 PF09304 Cortex-I_coil: Cortex 72.2 26 0.00057 30.5 8.1 34 241-274 19-52 (107)
105 PRK05431 seryl-tRNA synthetase 72.1 20 0.00042 36.9 8.6 84 196-279 11-100 (425)
106 PRK10803 tol-pal system protei 71.3 14 0.0003 35.6 6.9 49 239-287 55-103 (263)
107 COG2919 Septum formation initi 71.3 17 0.00038 31.1 6.8 34 241-274 53-86 (117)
108 PF07888 CALCOCO1: Calcium bin 71.1 41 0.00088 36.5 10.8 38 243-280 190-227 (546)
109 PF04111 APG6: Autophagy prote 71.0 21 0.00046 35.4 8.2 59 237-298 77-142 (314)
110 KOG4657|consensus 70.9 37 0.00081 33.3 9.6 43 234-276 82-124 (246)
111 PF09738 DUF2051: Double stran 70.9 29 0.00063 34.7 9.2 46 238-283 119-164 (302)
112 KOG0996|consensus 70.9 27 0.00059 40.9 10.0 87 197-283 493-587 (1293)
113 cd00890 Prefoldin Prefoldin is 70.9 14 0.00031 30.5 6.1 44 236-279 85-128 (129)
114 PF10224 DUF2205: Predicted co 70.1 41 0.00089 27.7 8.4 46 236-281 21-66 (80)
115 PRK15422 septal ring assembly 70.1 22 0.00048 29.5 6.9 40 241-280 35-74 (79)
116 PRK00888 ftsB cell division pr 70.1 18 0.0004 30.6 6.6 48 237-288 33-80 (105)
117 PRK13729 conjugal transfer pil 70.1 13 0.00029 39.4 6.9 42 241-282 79-120 (475)
118 PF04849 HAP1_N: HAP1 N-termin 70.0 11 0.00025 37.8 6.2 55 236-290 158-212 (306)
119 PF10226 DUF2216: Uncharacteri 70.0 1E+02 0.0023 29.4 12.1 20 186-205 8-27 (195)
120 PF13805 Pil1: Eisosome compon 69.8 30 0.00064 34.4 8.9 47 209-255 136-182 (271)
121 PRK13729 conjugal transfer pil 69.8 15 0.00032 39.1 7.2 42 239-280 84-125 (475)
122 COG3074 Uncharacterized protei 69.7 22 0.00047 29.3 6.6 40 241-280 35-74 (79)
123 PF02996 Prefoldin: Prefoldin 69.6 18 0.00039 29.8 6.4 43 238-280 77-119 (120)
124 PF15619 Lebercilin: Ciliary p 69.2 73 0.0016 29.8 10.9 81 196-279 56-145 (194)
125 PF04102 SlyX: SlyX; InterPro 69.0 16 0.00034 28.7 5.6 43 239-281 12-54 (69)
126 TIGR00414 serS seryl-tRNA synt 69.0 23 0.0005 36.3 8.3 86 195-280 10-104 (418)
127 PF04977 DivIC: Septum formati 68.9 15 0.00033 27.9 5.4 31 238-268 24-54 (80)
128 PRK09039 hypothetical protein; 68.8 40 0.00086 33.8 9.7 52 240-291 153-208 (343)
129 PF10805 DUF2730: Protein of u 68.7 26 0.00055 29.6 7.2 44 237-280 48-93 (106)
130 cd00632 Prefoldin_beta Prefold 68.7 25 0.00053 29.1 7.0 45 234-278 59-103 (105)
131 PF09727 CortBP2: Cortactin-bi 68.6 56 0.0012 31.0 10.1 81 170-265 60-154 (192)
132 PHA02562 46 endonuclease subun 68.3 33 0.00072 35.1 9.3 34 241-274 361-394 (562)
133 PF13815 Dzip-like_N: Iguana/D 68.2 21 0.00045 30.4 6.6 34 239-272 81-114 (118)
134 PF05890 Ebp2: Eukaryotic rRNA 68.0 47 0.001 32.7 9.8 34 176-219 93-126 (271)
135 PF08614 ATG16: Autophagy prot 67.8 38 0.00082 31.0 8.6 37 239-275 131-167 (194)
136 PF06098 Radial_spoke_3: Radia 67.8 51 0.0011 32.9 10.1 83 208-297 150-242 (291)
137 COG3883 Uncharacterized protei 67.2 28 0.00062 34.4 8.1 64 224-287 45-108 (265)
138 TIGR02338 gimC_beta prefoldin, 66.7 24 0.00053 29.5 6.7 46 234-279 63-108 (110)
139 PF01920 Prefoldin_2: Prefoldi 66.6 12 0.00025 29.9 4.6 40 237-276 61-100 (106)
140 TIGR01069 mutS2 MutS2 family p 66.6 47 0.001 36.9 10.6 35 177-213 487-525 (771)
141 PF13815 Dzip-like_N: Iguana/D 66.4 30 0.00066 29.4 7.3 41 241-281 76-116 (118)
142 PF11382 DUF3186: Protein of u 66.2 18 0.0004 35.6 6.7 45 239-283 33-77 (308)
143 PRK03947 prefoldin subunit alp 66.2 29 0.00063 29.8 7.2 45 237-281 93-137 (140)
144 TIGR00634 recN DNA repair prot 66.1 47 0.001 35.1 10.1 42 234-275 335-376 (563)
145 TIGR02449 conserved hypothetic 66.1 42 0.00091 26.8 7.4 40 240-279 16-55 (65)
146 PRK13922 rod shape-determining 65.9 18 0.00038 34.4 6.3 35 239-273 70-107 (276)
147 PF12781 AAA_9: ATP-binding dy 65.7 16 0.00036 34.4 6.1 55 241-295 153-209 (228)
148 TIGR01000 bacteriocin_acc bact 65.4 67 0.0015 32.8 10.8 24 256-279 288-311 (457)
149 TIGR00414 serS seryl-tRNA synt 65.2 63 0.0014 33.2 10.5 57 222-278 51-109 (418)
150 PF07334 IFP_35_N: Interferon- 65.1 14 0.00029 30.5 4.6 28 248-275 3-30 (76)
151 PLN02320 seryl-tRNA synthetase 65.1 32 0.0007 36.7 8.6 81 183-282 87-167 (502)
152 KOG2391|consensus 64.8 26 0.00056 36.1 7.5 48 227-277 231-278 (365)
153 TIGR01242 26Sp45 26S proteasom 64.8 15 0.00032 36.2 5.8 42 240-281 1-42 (364)
154 PF05130 FlgN: FlgN protein; 64.7 18 0.00039 29.5 5.4 54 237-290 76-129 (143)
155 COG4026 Uncharacterized protei 64.6 37 0.0008 33.6 8.3 32 241-272 159-190 (290)
156 PF12325 TMF_TATA_bd: TATA ele 64.5 26 0.00055 30.7 6.6 40 239-278 45-87 (120)
157 TIGR02209 ftsL_broad cell divi 64.5 45 0.00097 26.0 7.4 40 242-281 28-69 (85)
158 PRK09631 DNA topoisomerase IV 64.2 55 0.0012 36.0 10.4 14 207-220 384-397 (635)
159 COG1382 GimC Prefoldin, chaper 64.2 30 0.00066 30.5 7.0 45 246-290 71-115 (119)
160 PF04012 PspA_IM30: PspA/IM30 64.1 1E+02 0.0022 28.2 10.8 36 241-276 101-136 (221)
161 PRK03918 chromosome segregatio 64.1 57 0.0012 35.5 10.5 32 250-281 664-695 (880)
162 KOG2483|consensus 64.1 15 0.00033 35.5 5.6 42 234-275 101-142 (232)
163 PRK10363 cpxP periplasmic repr 64.1 20 0.00044 33.2 6.1 24 201-224 44-67 (166)
164 PF03980 Nnf1: Nnf1 ; InterPr 63.8 35 0.00076 28.3 7.0 21 190-210 14-34 (109)
165 PF02403 Seryl_tRNA_N: Seryl-t 63.5 56 0.0012 26.8 8.1 79 183-279 23-101 (108)
166 PRK02119 hypothetical protein; 63.4 35 0.00076 27.3 6.7 41 239-279 17-57 (73)
167 PRK02793 phi X174 lysis protei 63.4 35 0.00076 27.2 6.6 41 239-279 16-56 (72)
168 PF12128 DUF3584: Protein of u 63.3 86 0.0019 36.4 12.2 86 195-283 450-535 (1201)
169 TIGR03752 conj_TIGR03752 integ 63.1 23 0.0005 37.7 7.0 99 171-279 41-143 (472)
170 PRK00409 recombination and DNA 62.9 57 0.0012 36.3 10.4 33 177-211 492-528 (782)
171 PF07795 DUF1635: Protein of u 62.7 42 0.0009 32.4 8.1 43 195-249 2-44 (214)
172 PF04156 IncA: IncA protein; 62.5 1E+02 0.0022 27.5 10.2 25 234-258 126-150 (191)
173 PRK03947 prefoldin subunit alp 62.2 90 0.0019 26.8 9.5 42 242-283 91-132 (140)
174 PRK02224 chromosome segregatio 62.1 82 0.0018 34.5 11.3 7 185-191 460-466 (880)
175 TIGR02680 conserved hypothetic 61.8 71 0.0015 37.7 11.3 92 184-279 215-317 (1353)
176 PF04156 IncA: IncA protein; 61.8 1.2E+02 0.0025 27.1 10.4 51 228-278 134-184 (191)
177 COG3883 Uncharacterized protei 61.8 30 0.00065 34.2 7.2 37 239-275 67-103 (265)
178 COG4372 Uncharacterized protei 61.7 1.1E+02 0.0023 32.6 11.3 84 197-283 105-189 (499)
179 KOG4571|consensus 61.7 44 0.00094 33.7 8.3 34 237-270 254-287 (294)
180 cd00187 TOP4c DNA Topoisomeras 61.6 50 0.0011 34.6 9.2 32 189-220 361-398 (445)
181 PF10211 Ax_dynein_light: Axon 61.6 62 0.0013 29.9 8.9 99 177-278 49-160 (189)
182 COG4467 Regulator of replicati 61.4 22 0.00048 31.3 5.5 40 237-276 7-53 (114)
183 PF03670 UPF0184: Uncharacteri 61.1 33 0.00071 28.7 6.3 42 238-279 33-74 (83)
184 PRK09039 hypothetical protein; 60.9 97 0.0021 31.1 10.8 48 239-286 138-185 (343)
185 COG5613 Uncharacterized conser 60.8 31 0.00067 35.8 7.3 50 239-288 331-380 (400)
186 TIGR01061 parC_Gpos DNA topois 60.8 1.3E+02 0.0028 33.5 12.6 117 188-315 382-515 (738)
187 COG1579 Zn-ribbon protein, pos 60.7 64 0.0014 31.5 9.1 79 194-275 66-147 (239)
188 PF12777 MT: Microtubule-bindi 60.6 48 0.001 33.0 8.5 65 224-289 228-292 (344)
189 PRK04778 septation ring format 60.3 1.1E+02 0.0024 32.5 11.6 106 196-302 330-449 (569)
190 PF15397 DUF4618: Domain of un 60.2 1.1E+02 0.0023 30.4 10.6 95 183-283 114-217 (258)
191 PF12709 Kinetocho_Slk19: Cent 59.8 25 0.00053 29.7 5.4 32 239-270 50-81 (87)
192 PF06657 Cep57_MT_bd: Centroso 59.8 56 0.0012 26.5 7.3 42 238-279 17-70 (79)
193 PF07106 TBPIP: Tat binding pr 59.6 26 0.00056 31.1 5.9 25 256-280 113-137 (169)
194 PF12808 Mto2_bdg: Micro-tubul 59.6 30 0.00064 26.6 5.3 44 235-278 1-48 (52)
195 PF08286 Spc24: Spc24 subunit 59.5 3 6.6E-05 35.4 0.0 30 240-269 15-44 (118)
196 PF06103 DUF948: Bacterial pro 59.4 54 0.0012 26.2 7.2 44 239-282 34-77 (90)
197 PF05103 DivIVA: DivIVA protei 59.3 5.4 0.00012 33.3 1.5 44 239-282 26-69 (131)
198 PF04111 APG6: Autophagy prote 59.3 1.1E+02 0.0023 30.5 10.7 35 246-280 100-134 (314)
199 PLN02678 seryl-tRNA synthetase 59.2 79 0.0017 33.2 10.1 29 255-283 74-102 (448)
200 PF08537 NBP1: Fungal Nap bind 59.2 48 0.001 33.8 8.2 21 220-240 125-145 (323)
201 COG4942 Membrane-bound metallo 59.1 75 0.0016 33.5 9.9 55 224-278 51-106 (420)
202 PF04949 Transcrip_act: Transc 59.1 59 0.0013 30.1 8.1 56 226-282 101-157 (159)
203 COG4575 ElaB Uncharacterized c 59.1 30 0.00066 30.0 5.9 54 235-288 5-59 (104)
204 PF13851 GAS: Growth-arrest sp 59.0 41 0.00089 31.4 7.3 20 208-231 21-40 (201)
205 PRK10803 tol-pal system protei 58.9 31 0.00067 33.3 6.7 44 237-280 60-103 (263)
206 PF14931 IFT20: Intraflagellar 58.8 77 0.0017 27.8 8.5 41 224-266 68-108 (120)
207 KOG0995|consensus 58.8 39 0.00085 36.8 8.0 56 209-264 306-365 (581)
208 PRK13979 DNA topoisomerase IV 58.6 27 0.00058 40.0 7.1 102 199-314 418-533 (957)
209 KOG2077|consensus 58.2 61 0.0013 35.9 9.3 56 227-282 346-422 (832)
210 PF04201 TPD52: Tumour protein 58.1 74 0.0016 29.6 8.6 28 240-267 38-65 (162)
211 PF06632 XRCC4: DNA double-str 58.1 46 0.00099 33.9 8.0 18 243-260 156-173 (342)
212 PF05957 DUF883: Bacterial pro 58.1 31 0.00068 27.9 5.7 41 242-282 2-43 (94)
213 PF07798 DUF1640: Protein of u 58.0 1.5E+02 0.0031 26.9 11.6 18 199-216 7-24 (177)
214 KOG0837|consensus 57.9 51 0.0011 33.0 8.0 50 242-291 224-273 (279)
215 KOG0483|consensus 57.9 52 0.0011 31.2 7.8 73 192-279 73-146 (198)
216 PF15397 DUF4618: Domain of un 57.8 1.1E+02 0.0023 30.3 10.2 87 196-285 140-233 (258)
217 PF13166 AAA_13: AAA domain 57.7 1.2E+02 0.0026 32.3 11.4 34 242-275 421-454 (712)
218 PRK05431 seryl-tRNA synthetase 57.6 1.5E+02 0.0033 30.6 11.8 38 239-276 67-104 (425)
219 KOG4677|consensus 57.6 75 0.0016 34.2 9.6 46 171-216 280-328 (554)
220 PF07989 Microtub_assoc: Micro 57.3 59 0.0013 26.2 7.0 34 247-280 38-71 (75)
221 KOG0249|consensus 57.2 70 0.0015 36.2 9.6 48 233-280 211-258 (916)
222 PHA02562 46 endonuclease subun 57.1 66 0.0014 33.0 9.1 6 39-44 50-55 (562)
223 PRK12751 cpxP periplasmic stre 57.1 66 0.0014 29.5 8.1 23 201-223 50-72 (162)
224 PF12718 Tropomyosin_1: Tropom 57.0 53 0.0012 29.2 7.4 40 239-278 29-68 (143)
225 PF10211 Ax_dynein_light: Axon 57.0 1.2E+02 0.0026 28.1 9.9 43 233-275 122-164 (189)
226 PF09312 SurA_N: SurA N-termin 56.8 19 0.0004 30.3 4.3 50 176-231 57-116 (118)
227 KOG0500|consensus 56.7 52 0.0011 35.5 8.4 102 177-285 396-505 (536)
228 COG2900 SlyX Uncharacterized p 56.7 1.1E+02 0.0024 25.1 8.7 45 239-283 9-53 (72)
229 TIGR00634 recN DNA repair prot 56.6 92 0.002 32.9 10.2 73 199-278 289-372 (563)
230 PRK05561 DNA topoisomerase IV 56.5 72 0.0016 35.5 9.8 113 188-314 395-524 (742)
231 COG1382 GimC Prefoldin, chaper 56.4 55 0.0012 29.0 7.2 47 235-281 67-113 (119)
232 TIGR01730 RND_mfp RND family e 56.3 1.5E+02 0.0032 27.6 10.5 15 260-274 117-131 (322)
233 TIGR03185 DNA_S_dndD DNA sulfu 56.2 64 0.0014 34.7 9.1 23 261-283 264-286 (650)
234 PRK10132 hypothetical protein; 56.2 50 0.0011 28.4 6.8 49 239-287 13-62 (108)
235 cd04766 HTH_HspR Helix-Turn-He 56.1 44 0.00096 26.7 6.2 15 207-221 38-52 (91)
236 cd04776 HTH_GnyR Helix-Turn-He 55.8 70 0.0015 27.2 7.6 14 203-216 51-64 (118)
237 KOG0977|consensus 55.8 96 0.0021 33.7 10.2 25 241-265 165-189 (546)
238 KOG0930|consensus 55.7 25 0.00054 35.9 5.6 19 206-224 9-27 (395)
239 PF05377 FlaC_arch: Flagella a 55.6 57 0.0012 25.4 6.4 41 239-283 8-48 (55)
240 PF07200 Mod_r: Modifier of ru 55.5 1.4E+02 0.003 25.8 10.0 39 240-278 50-88 (150)
241 PF07407 Seadorna_VP6: Seadorn 55.4 32 0.00069 35.6 6.3 33 237-269 31-63 (420)
242 PRK13922 rod shape-determining 55.4 71 0.0015 30.3 8.4 44 236-279 60-106 (276)
243 PF12709 Kinetocho_Slk19: Cent 55.1 86 0.0019 26.5 7.8 40 240-279 44-83 (87)
244 PRK02195 V-type ATP synthase s 55.1 82 0.0018 29.5 8.6 41 245-285 24-64 (201)
245 PF15058 Speriolin_N: Sperioli 55.0 30 0.00066 33.1 5.7 35 245-280 12-46 (200)
246 PF10473 CENP-F_leu_zip: Leuci 55.0 59 0.0013 29.3 7.3 45 238-282 52-96 (140)
247 KOG4460|consensus 54.9 81 0.0018 34.8 9.5 84 196-279 558-643 (741)
248 KOG0995|consensus 54.8 92 0.002 34.1 9.9 18 32-49 31-48 (581)
249 COG2882 FliJ Flagellar biosynt 54.5 1.4E+02 0.0031 27.1 9.8 76 197-275 33-108 (148)
250 PF04880 NUDE_C: NUDE protein, 54.4 6.8 0.00015 36.2 1.4 31 245-276 24-54 (166)
251 PF14257 DUF4349: Domain of un 54.4 45 0.00097 31.5 6.9 19 236-254 160-178 (262)
252 PRK09343 prefoldin subunit bet 54.1 70 0.0015 27.5 7.5 46 235-280 68-113 (121)
253 PRK15178 Vi polysaccharide exp 53.5 81 0.0018 33.2 9.1 47 237-283 285-338 (434)
254 PF14335 DUF4391: Domain of un 53.4 23 0.0005 33.1 4.7 41 235-275 179-221 (221)
255 COG3105 Uncharacterized protei 53.3 53 0.0012 29.8 6.7 54 237-290 33-86 (138)
256 KOG1853|consensus 53.2 50 0.0011 33.2 7.1 35 245-279 84-118 (333)
257 PF01486 K-box: K-box region; 53.0 49 0.0011 27.1 6.1 35 171-205 23-57 (100)
258 PRK04406 hypothetical protein; 52.9 61 0.0013 26.2 6.4 41 239-279 19-59 (75)
259 PF14197 Cep57_CLD_2: Centroso 52.7 86 0.0019 25.0 7.2 41 241-281 22-62 (69)
260 cd00584 Prefoldin_alpha Prefol 52.7 47 0.001 28.0 6.1 41 239-279 88-128 (129)
261 COG5509 Uncharacterized small 52.6 13 0.00028 29.8 2.4 53 181-236 12-64 (65)
262 PF02994 Transposase_22: L1 tr 52.5 60 0.0013 32.9 7.8 47 238-284 144-190 (370)
263 PF03962 Mnd1: Mnd1 family; I 52.4 84 0.0018 29.1 8.2 23 233-255 105-127 (188)
264 PF14197 Cep57_CLD_2: Centroso 52.4 79 0.0017 25.2 6.9 37 243-279 10-46 (69)
265 KOG4687|consensus 52.3 61 0.0013 33.0 7.7 63 231-293 153-215 (389)
266 KOG0250|consensus 52.1 1.3E+02 0.0027 35.3 10.9 20 228-247 369-388 (1074)
267 PRK03992 proteasome-activating 52.1 44 0.00095 33.6 6.8 39 241-279 11-49 (389)
268 cd07596 BAR_SNX The Bin/Amphip 52.0 82 0.0018 27.6 7.8 24 238-261 145-168 (218)
269 PRK06800 fliH flagellar assemb 51.8 68 0.0015 30.9 7.5 38 245-282 66-103 (228)
270 PTZ00454 26S protease regulato 51.7 44 0.00094 34.2 6.8 39 241-279 25-63 (398)
271 COG2919 Septum formation initi 51.6 35 0.00077 29.2 5.2 37 245-281 50-86 (117)
272 PF04999 FtsL: Cell division p 51.5 42 0.00091 27.1 5.4 31 242-272 39-69 (97)
273 TIGR01025 rpsS_arch ribosomal 51.4 22 0.00048 32.0 4.1 35 186-220 10-51 (135)
274 PRK02224 chromosome segregatio 51.3 95 0.0021 34.0 9.6 52 226-277 580-631 (880)
275 TIGR02209 ftsL_broad cell divi 51.2 68 0.0015 25.0 6.4 35 245-279 24-58 (85)
276 TIGR00219 mreC rod shape-deter 51.2 39 0.00085 33.0 6.1 27 178-204 37-63 (283)
277 PF08232 Striatin: Striatin fa 51.1 72 0.0016 28.1 7.1 56 224-279 18-73 (134)
278 PF07888 CALCOCO1: Calcium bin 51.0 42 0.00092 36.3 6.7 40 242-281 421-460 (546)
279 cd04779 HTH_MerR-like_sg4 Heli 50.8 80 0.0017 27.8 7.4 6 206-211 55-60 (134)
280 PRK14127 cell division protein 50.7 48 0.001 28.7 5.9 32 251-282 36-67 (109)
281 PHA00489 scaffolding protein 50.7 1.2E+02 0.0026 26.2 8.0 67 194-280 3-69 (101)
282 PF07989 Microtub_assoc: Micro 50.6 1E+02 0.0022 24.9 7.3 38 238-275 36-73 (75)
283 PF10168 Nup88: Nuclear pore c 50.6 1.4E+02 0.0029 33.3 10.6 95 188-282 526-623 (717)
284 PF08614 ATG16: Autophagy prot 50.3 70 0.0015 29.2 7.3 37 239-275 145-181 (194)
285 PHA02592 52 DNA topisomerase I 50.2 96 0.0021 32.6 9.0 21 196-216 371-391 (439)
286 PLN02320 seryl-tRNA synthetase 49.9 1.5E+02 0.0032 31.9 10.5 29 255-283 133-161 (502)
287 PRK04325 hypothetical protein; 49.8 81 0.0018 25.2 6.7 41 239-279 17-57 (74)
288 cd04775 HTH_Cfa-like Helix-Tur 49.7 83 0.0018 25.9 6.9 15 207-221 38-52 (102)
289 KOG3650|consensus 49.7 68 0.0015 28.1 6.6 48 237-284 62-111 (120)
290 PRK00736 hypothetical protein; 49.3 81 0.0018 24.9 6.5 41 239-279 13-53 (68)
291 cd04776 HTH_GnyR Helix-Turn-He 49.2 1.6E+02 0.0036 24.9 10.1 16 243-258 85-100 (118)
292 KOG0994|consensus 48.7 1.7E+02 0.0036 35.2 11.1 36 178-216 1500-1535(1758)
293 PF01166 TSC22: TSC-22/dip/bun 48.5 31 0.00067 27.3 4.0 30 245-274 14-43 (59)
294 cd01111 HTH_MerD Helix-Turn-He 48.5 1.1E+02 0.0024 25.7 7.6 29 250-278 78-106 (107)
295 TIGR01063 gyrA DNA gyrase, A s 48.1 1E+02 0.0022 34.6 9.3 107 195-315 394-514 (800)
296 PRK00083 frr ribosome recyclin 48.0 1.7E+02 0.0036 27.2 9.4 70 181-260 97-166 (185)
297 PF13094 CENP-Q: CENP-Q, a CEN 48.0 1.1E+02 0.0023 27.0 7.9 45 237-281 40-84 (160)
298 PF10883 DUF2681: Protein of u 48.0 47 0.001 27.9 5.2 27 245-271 30-56 (87)
299 PF14712 Snapin_Pallidin: Snap 47.7 1.4E+02 0.0031 23.7 8.6 75 191-278 11-90 (92)
300 PF09831 DUF2058: Uncharacteri 47.7 2.4E+02 0.0052 26.5 10.3 88 199-292 2-92 (177)
301 COG0188 GyrA Type IIA topoisom 47.6 73 0.0016 36.1 8.1 24 197-220 404-427 (804)
302 COG1730 GIM5 Predicted prefold 47.6 87 0.0019 28.4 7.3 44 238-281 94-137 (145)
303 PHA02557 22 prohead core prote 47.6 96 0.0021 31.0 8.1 79 196-274 89-177 (271)
304 PRK05560 DNA gyrase subunit A; 47.5 1.3E+02 0.0029 33.6 10.1 19 296-314 497-515 (805)
305 KOG2577|consensus 47.3 16 0.00034 37.5 2.8 53 216-268 118-174 (354)
306 PF11853 DUF3373: Protein of u 47.1 18 0.0004 38.5 3.3 35 245-280 25-59 (489)
307 PF08317 Spc7: Spc7 kinetochor 47.1 1.5E+02 0.0033 29.2 9.5 17 222-238 195-212 (325)
308 PHA01750 hypothetical protein 46.9 1.3E+02 0.0027 24.8 7.3 31 251-281 41-71 (75)
309 smart00340 HALZ homeobox assoc 46.9 36 0.00079 25.5 3.9 23 250-272 10-32 (44)
310 TIGR03185 DNA_S_dndD DNA sulfu 46.8 2.3E+02 0.005 30.6 11.4 10 37-46 49-58 (650)
311 KOG0627|consensus 46.7 47 0.001 32.1 5.8 69 211-279 95-175 (304)
312 PF05529 Bap31: B-cell recepto 46.3 87 0.0019 28.3 7.2 38 237-274 153-190 (192)
313 KOG3119|consensus 46.2 1.1E+02 0.0024 29.9 8.2 38 237-274 221-258 (269)
314 PF06785 UPF0242: Uncharacteri 46.2 53 0.0011 34.1 6.2 43 239-281 128-170 (401)
315 PRK03992 proteasome-activating 46.0 65 0.0014 32.4 6.9 44 240-283 3-46 (389)
316 PF04889 Cwf_Cwc_15: Cwf15/Cwc 45.7 1.2E+02 0.0026 29.5 8.4 63 243-311 144-210 (244)
317 cd01109 HTH_YyaN Helix-Turn-He 45.7 1.7E+02 0.0038 24.2 9.1 28 248-275 82-109 (113)
318 PF03962 Mnd1: Mnd1 family; I 45.7 2.4E+02 0.0052 26.2 10.0 12 260-271 111-122 (188)
319 cd04789 HTH_Cfa Helix-Turn-Hel 45.6 1.3E+02 0.0028 24.8 7.5 15 207-221 38-52 (102)
320 KOG4848|consensus 45.5 3E+02 0.0065 26.8 10.8 83 197-287 99-181 (225)
321 PF06160 EzrA: Septation ring 45.4 4.1E+02 0.0089 28.4 13.1 95 189-283 35-153 (560)
322 COG3937 Uncharacterized conser 45.2 1.4E+02 0.003 26.2 7.8 13 201-213 32-44 (108)
323 PRK11020 hypothetical protein; 45.2 1.4E+02 0.003 26.6 7.9 47 224-271 18-65 (118)
324 PF04859 DUF641: Plant protein 45.2 1E+02 0.0022 27.5 7.2 89 180-280 32-122 (131)
325 PHA03065 Hypothetical protein; 45.1 61 0.0013 34.3 6.7 48 226-273 89-136 (438)
326 PRK09413 IS2 repressor TnpA; R 45.0 50 0.0011 27.9 5.1 28 240-267 73-100 (121)
327 KOG1760|consensus 44.6 94 0.002 28.1 6.8 42 247-288 83-124 (131)
328 KOG1656|consensus 44.6 2.1E+02 0.0046 27.9 9.6 22 222-243 56-77 (221)
329 PF01920 Prefoldin_2: Prefoldi 44.6 1.1E+02 0.0023 24.4 6.7 43 245-287 62-104 (106)
330 PF15058 Speriolin_N: Sperioli 44.5 58 0.0013 31.2 5.9 35 246-281 6-40 (200)
331 PRK10404 hypothetical protein; 44.3 83 0.0018 26.7 6.3 44 239-282 6-50 (101)
332 PF10883 DUF2681: Protein of u 44.3 77 0.0017 26.6 5.9 31 246-276 24-54 (87)
333 KOG0161|consensus 44.3 1.6E+02 0.0034 36.7 10.6 84 192-278 1060-1144(1930)
334 PF08826 DMPK_coil: DMPK coile 44.1 1.1E+02 0.0024 24.1 6.4 31 242-272 29-59 (61)
335 PF09730 BicD: Microtubule-ass 44.1 53 0.0012 36.6 6.4 33 243-275 60-92 (717)
336 TIGR02231 conserved hypothetic 44.0 2E+02 0.0042 30.1 10.2 42 239-280 132-173 (525)
337 PF11221 Med21: Subunit 21 of 43.9 71 0.0015 28.1 6.1 32 250-281 109-140 (144)
338 PF11414 Suppressor_APC: Adeno 43.8 75 0.0016 26.4 5.8 38 238-275 7-44 (84)
339 COG4467 Regulator of replicati 43.7 89 0.0019 27.6 6.4 30 240-269 24-53 (114)
340 PHA03158 hypothetical protein; 43.7 62 0.0013 31.5 6.0 39 208-252 230-268 (273)
341 PF04728 LPP: Lipoprotein leuc 43.7 1.6E+02 0.0034 23.1 7.6 39 240-278 12-50 (56)
342 PRK12758 DNA topoisomerase IV 43.6 1.5E+02 0.0033 34.0 9.8 14 207-220 405-418 (869)
343 PF00038 Filament: Intermediat 43.6 3E+02 0.0065 26.3 11.1 13 243-255 228-240 (312)
344 PF10018 Med4: Vitamin-D-recep 43.6 1.7E+02 0.0037 26.8 8.6 48 237-284 21-68 (188)
345 TIGR02680 conserved hypothetic 43.5 64 0.0014 38.1 7.2 49 227-276 732-780 (1353)
346 cd07429 Cby_like Chibby, a nuc 43.4 61 0.0013 28.2 5.4 27 250-276 77-103 (108)
347 PF06216 RTBV_P46: Rice tungro 43.2 1.1E+02 0.0024 30.9 7.8 55 238-293 64-118 (389)
348 PRK04778 septation ring format 43.2 3.7E+02 0.0081 28.7 12.2 46 238-283 112-157 (569)
349 cd04765 HTH_MlrA-like_sg2 Heli 43.1 50 0.0011 27.3 4.7 62 207-275 38-99 (99)
350 KOG3335|consensus 42.9 30 0.00065 32.6 3.7 32 172-203 41-77 (181)
351 TIGR00293 prefoldin, archaeal 42.8 87 0.0019 26.3 6.2 37 239-275 87-123 (126)
352 PF13600 DUF4140: N-terminal d 42.7 71 0.0015 26.0 5.5 30 247-276 72-101 (104)
353 PF10205 KLRAQ: Predicted coil 42.6 78 0.0017 27.4 5.9 31 239-269 41-71 (102)
354 PRK00373 V-type ATP synthase s 42.4 1.4E+02 0.003 27.7 7.9 38 249-286 29-66 (204)
355 PF07716 bZIP_2: Basic region 42.4 83 0.0018 23.2 5.3 29 251-279 24-52 (54)
356 cd00632 Prefoldin_beta Prefold 42.3 75 0.0016 26.3 5.6 37 247-283 65-101 (105)
357 TIGR00496 frr ribosome recycli 42.3 2.4E+02 0.0052 26.0 9.4 70 181-260 88-157 (176)
358 KOG1029|consensus 42.3 1.4E+02 0.0031 34.3 9.2 53 222-274 515-578 (1118)
359 PRK09413 IS2 repressor TnpA; R 42.1 73 0.0016 26.9 5.7 31 245-275 71-101 (121)
360 COG4026 Uncharacterized protei 42.0 81 0.0018 31.3 6.6 7 181-187 91-97 (290)
361 PF13600 DUF4140: N-terminal d 42.0 61 0.0013 26.4 5.0 33 239-271 71-103 (104)
362 COG1196 Smc Chromosome segrega 41.9 1.8E+02 0.0039 33.6 10.3 19 255-273 824-842 (1163)
363 PF14282 FlxA: FlxA-like prote 41.8 1.1E+02 0.0023 25.9 6.6 25 259-283 51-75 (106)
364 KOG2011|consensus 41.8 1.5E+02 0.0033 34.6 9.6 88 195-289 197-299 (1048)
365 KOG1962|consensus 41.7 63 0.0014 31.2 5.7 14 264-277 177-190 (216)
366 PRK10770 peptidyl-prolyl cis-t 41.6 2.4E+02 0.0051 28.2 10.0 37 177-213 64-110 (413)
367 PF08172 CASP_C: CASP C termin 41.4 1.1E+02 0.0024 29.7 7.4 42 241-282 89-130 (248)
368 PRK00247 putative inner membra 40.9 4.1E+02 0.0088 28.2 11.8 32 205-236 276-311 (429)
369 TIGR02977 phageshock_pspA phag 40.8 3.1E+02 0.0066 25.6 10.9 38 239-276 100-137 (219)
370 PF07028 DUF1319: Protein of u 40.7 1.6E+02 0.0036 26.4 7.7 23 261-283 62-84 (126)
371 PF13874 Nup54: Nucleoporin co 40.7 1.2E+02 0.0026 26.5 7.0 23 191-213 24-46 (141)
372 TIGR03689 pup_AAA proteasome A 40.7 55 0.0012 34.9 5.7 42 240-281 3-44 (512)
373 KOG4343|consensus 40.6 45 0.00096 36.5 5.0 32 240-271 311-342 (655)
374 COG3678 CpxP P pilus assembly/ 40.3 3E+02 0.0064 25.3 11.2 23 202-224 52-74 (160)
375 COG4985 ABC-type phosphate tra 40.2 85 0.0018 31.3 6.4 54 235-292 203-257 (289)
376 PF05761 5_nucleotid: 5' nucle 40.0 44 0.00095 35.0 4.8 34 253-286 363-396 (448)
377 PF03961 DUF342: Protein of un 40.0 1.2E+02 0.0026 31.2 7.8 32 247-278 377-408 (451)
378 PHA01750 hypothetical protein 39.9 55 0.0012 26.8 4.3 35 243-277 40-74 (75)
379 PF14282 FlxA: FlxA-like prote 39.7 1.1E+02 0.0024 25.8 6.3 16 268-283 53-68 (106)
380 PF01813 ATP-synt_D: ATP synth 39.7 1.6E+02 0.0034 26.9 7.8 41 246-286 16-56 (196)
381 PF05667 DUF812: Protein of un 39.5 92 0.002 33.9 7.2 49 242-291 346-394 (594)
382 PF05008 V-SNARE: Vesicle tran 39.5 66 0.0014 24.9 4.6 39 243-281 37-76 (79)
383 PF13094 CENP-Q: CENP-Q, a CEN 39.4 1.5E+02 0.0033 26.1 7.4 43 242-284 38-80 (160)
384 PF09744 Jnk-SapK_ap_N: JNK_SA 39.3 1.8E+02 0.0039 26.6 8.0 26 251-276 88-113 (158)
385 TIGR00219 mreC rod shape-deter 39.2 76 0.0017 31.0 6.0 37 239-275 67-107 (283)
386 PF07889 DUF1664: Protein of u 39.1 2E+02 0.0043 25.6 8.0 44 239-282 69-112 (126)
387 PF07334 IFP_35_N: Interferon- 39.1 58 0.0013 26.8 4.4 25 256-280 4-28 (76)
388 PF01763 Herpes_UL6: Herpesvir 38.9 1.1E+02 0.0025 33.2 7.7 43 239-281 364-406 (557)
389 PF15188 CCDC-167: Coiled-coil 38.8 1.1E+02 0.0024 25.7 6.0 26 242-267 40-65 (85)
390 PF05008 V-SNARE: Vesicle tran 38.7 97 0.0021 23.9 5.5 37 239-275 40-77 (79)
391 PF03961 DUF342: Protein of un 38.7 95 0.0021 31.9 6.9 36 250-285 373-408 (451)
392 KOG2189|consensus 38.5 97 0.0021 35.2 7.2 84 188-281 26-128 (829)
393 KOG1853|consensus 38.2 3.5E+02 0.0076 27.5 10.3 78 253-338 158-235 (333)
394 PF04012 PspA_IM30: PspA/IM30 38.2 1.2E+02 0.0025 27.8 6.8 43 239-281 92-134 (221)
395 PF11853 DUF3373: Protein of u 38.2 29 0.00063 37.0 3.2 27 246-272 32-58 (489)
396 PF04999 FtsL: Cell division p 38.1 1E+02 0.0022 24.9 5.7 27 239-265 43-69 (97)
397 PF05700 BCAS2: Breast carcino 38.1 1.6E+02 0.0034 27.7 7.7 49 232-281 163-211 (221)
398 PF11221 Med21: Subunit 21 of 38.0 95 0.0021 27.4 5.9 33 239-271 105-137 (144)
399 PF09738 DUF2051: Double stran 38.0 1.2E+02 0.0026 30.5 7.2 43 239-281 113-155 (302)
400 PF14662 CCDC155: Coiled-coil 37.7 1E+02 0.0023 29.4 6.4 35 240-274 104-138 (193)
401 PF06937 EURL: EURL protein; 37.6 86 0.0019 31.5 6.1 64 183-276 208-271 (285)
402 PF08640 U3_assoc_6: U3 small 37.6 1.6E+02 0.0035 24.0 6.8 50 195-246 4-53 (83)
403 PF15188 CCDC-167: Coiled-coil 37.5 1.1E+02 0.0023 25.7 5.7 19 239-257 6-24 (85)
404 KOG1103|consensus 37.5 1E+02 0.0022 32.5 6.8 61 219-279 219-279 (561)
405 COG1842 PspA Phage shock prote 37.4 1.2E+02 0.0026 29.1 6.9 34 245-278 106-139 (225)
406 TIGR00606 rad50 rad50. This fa 37.3 2.3E+02 0.0049 33.3 10.3 23 183-205 684-706 (1311)
407 KOG0250|consensus 37.2 1.7E+02 0.0037 34.4 9.0 18 236-253 370-387 (1074)
408 PF11418 Scaffolding_pro: Phi2 37.1 1.9E+02 0.004 24.9 7.1 68 194-281 2-69 (97)
409 TIGR01843 type_I_hlyD type I s 37.1 4E+02 0.0087 25.9 14.5 17 262-278 249-265 (423)
410 TIGR01807 CM_P2 chorismate mut 37.1 97 0.0021 24.3 5.3 33 242-274 3-35 (76)
411 PF05565 Sipho_Gp157: Siphovir 36.8 1.5E+02 0.0033 26.6 7.1 44 238-281 47-90 (162)
412 COG0172 SerS Seryl-tRNA synthe 36.7 1.1E+02 0.0024 32.2 7.1 32 248-279 71-102 (429)
413 PF09726 Macoilin: Transmembra 36.7 2.2E+02 0.0047 31.7 9.6 31 250-280 543-573 (697)
414 TIGR02169 SMC_prok_A chromosom 36.7 3.2E+02 0.0069 30.4 10.8 7 307-313 573-579 (1164)
415 cd01279 HTH_HspR-like Helix-Tu 36.6 1.1E+02 0.0024 25.0 5.8 54 207-264 38-91 (98)
416 PF06632 XRCC4: DNA double-str 36.5 1.4E+02 0.0029 30.5 7.5 22 240-261 160-181 (342)
417 PF14362 DUF4407: Domain of un 36.5 2.2E+02 0.0048 27.4 8.6 35 242-276 132-166 (301)
418 PF15290 Syntaphilin: Golgi-lo 36.5 2E+02 0.0044 29.2 8.5 42 207-258 59-102 (305)
419 PF05565 Sipho_Gp157: Siphovir 36.5 2.8E+02 0.0061 24.9 8.8 67 245-311 47-114 (162)
420 cd00890 Prefoldin Prefoldin is 36.3 1.5E+02 0.0032 24.4 6.6 39 243-281 85-123 (129)
421 PF05622 HOOK: HOOK protein; 36.3 12 0.00026 40.6 0.0 51 210-261 297-348 (713)
422 PF01166 TSC22: TSC-22/dip/bun 36.1 81 0.0018 25.0 4.6 19 246-264 22-40 (59)
423 PF09755 DUF2046: Uncharacteri 36.0 4.3E+02 0.0093 27.0 10.7 27 239-265 143-169 (310)
424 PF06717 DUF1202: Protein of u 35.9 1.3E+02 0.0027 30.6 7.0 62 179-263 116-177 (308)
425 PF10234 Cluap1: Clusterin-ass 35.9 2.8E+02 0.0061 27.6 9.3 24 264-287 223-246 (267)
426 KOG2391|consensus 35.7 1.7E+02 0.0038 30.4 8.0 53 238-290 225-284 (365)
427 PTZ00454 26S protease regulato 35.5 2.3E+02 0.0051 29.0 9.0 42 242-283 19-60 (398)
428 PF13166 AAA_13: AAA domain 35.4 3.3E+02 0.0071 29.1 10.4 29 239-267 425-453 (712)
429 PRK15396 murein lipoprotein; P 35.3 2.2E+02 0.0048 23.4 7.2 35 239-273 26-60 (78)
430 PF12711 Kinesin-relat_1: Kine 35.1 39 0.00084 28.4 2.8 19 260-278 45-63 (86)
431 COG1340 Uncharacterized archae 35.1 3.9E+02 0.0083 27.1 10.2 43 239-281 159-201 (294)
432 COG1394 NtpD Archaeal/vacuolar 34.8 1.7E+02 0.0037 28.1 7.5 44 244-287 23-66 (211)
433 PRK04038 rps19p 30S ribosomal 34.7 50 0.0011 29.8 3.7 20 186-205 12-31 (134)
434 PF08826 DMPK_coil: DMPK coile 34.6 2.3E+02 0.0049 22.3 7.8 42 241-282 14-55 (61)
435 PF14645 Chibby: Chibby family 34.6 1E+02 0.0022 26.8 5.4 30 246-275 72-101 (116)
436 PF10779 XhlA: Haemolysin XhlA 34.3 2.1E+02 0.0047 22.3 6.8 37 243-279 18-54 (71)
437 TIGR00513 accA acetyl-CoA carb 34.1 84 0.0018 31.8 5.5 45 243-287 8-56 (316)
438 PRK07857 hypothetical protein; 34.1 1.2E+02 0.0025 26.4 5.6 36 239-274 29-64 (106)
439 cd01106 HTH_TipAL-Mta Helix-Tu 34.1 2.3E+02 0.0051 23.0 7.3 25 248-272 76-100 (103)
440 PF14584 DUF4446: Protein of u 34.0 79 0.0017 28.6 4.8 41 242-282 43-83 (151)
441 PF04420 CHD5: CHD5-like prote 34.0 1.2E+02 0.0027 27.2 6.1 32 250-281 71-102 (161)
442 TIGR00606 rad50 rad50. This fa 33.8 3E+02 0.0066 32.3 10.6 40 236-275 879-918 (1311)
443 KOG2010|consensus 33.8 1.7E+02 0.0037 30.5 7.6 47 238-284 154-200 (405)
444 KOG0994|consensus 33.8 2.2E+02 0.0047 34.4 9.1 41 235-275 1707-1747(1758)
445 PRK12704 phosphodiesterase; Pr 33.8 3.9E+02 0.0085 28.6 10.6 6 308-313 210-215 (520)
446 PF01025 GrpE: GrpE; InterPro 33.7 62 0.0013 28.2 4.1 13 288-300 114-126 (165)
447 KOG4603|consensus 33.7 3.7E+02 0.008 25.8 9.2 76 183-277 64-141 (201)
448 KOG4797|consensus 33.7 2.5E+02 0.0054 25.0 7.6 25 241-265 70-94 (123)
449 KOG0239|consensus 33.7 3.5E+02 0.0076 30.1 10.5 26 223-249 227-252 (670)
450 COG2916 Hns DNA-binding protei 33.6 2.4E+02 0.0052 25.3 7.7 33 224-256 7-39 (128)
451 PF14257 DUF4349: Domain of un 33.4 1.7E+02 0.0038 27.6 7.3 25 257-281 167-191 (262)
452 PF05837 CENP-H: Centromere pr 33.4 3E+02 0.0064 23.2 8.0 48 237-286 37-84 (106)
453 smart00787 Spc7 Spc7 kinetocho 33.3 3.8E+02 0.0082 26.9 9.9 87 196-282 150-241 (312)
454 PRK10698 phage shock protein P 33.3 1.8E+02 0.004 27.5 7.4 41 238-278 99-139 (222)
455 PF09789 DUF2353: Uncharacteri 33.2 1.3E+02 0.0029 30.6 6.7 73 209-282 125-212 (319)
456 PF02344 Myc-LZ: Myc leucine z 33.1 1.2E+02 0.0026 21.5 4.5 24 250-273 6-29 (32)
457 PF07544 Med9: RNA polymerase 32.9 66 0.0014 26.1 3.8 44 230-274 38-81 (83)
458 PF04201 TPD52: Tumour protein 32.8 2E+02 0.0042 26.9 7.2 11 206-216 24-34 (162)
459 PF11365 DUF3166: Protein of u 32.5 1.4E+02 0.0031 25.5 5.8 37 239-275 9-45 (96)
460 PRK14011 prefoldin subunit alp 32.5 2.5E+02 0.0055 25.3 7.8 46 238-283 88-133 (144)
461 PRK14154 heat shock protein Gr 32.4 1.7E+02 0.0036 28.1 7.0 12 288-299 156-168 (208)
462 smart00498 FH2 Formin Homology 32.3 4.6E+02 0.01 26.8 10.6 36 183-219 91-135 (432)
463 PF10376 Mei5: Double-strand r 32.2 1.3E+02 0.0028 28.9 6.2 55 239-293 146-201 (221)
464 cd04772 HTH_TioE_rpt1 First He 32.2 1.7E+02 0.0038 23.9 6.2 15 207-221 38-52 (99)
465 PF06698 DUF1192: Protein of u 32.2 53 0.0012 25.8 3.0 33 189-224 16-48 (59)
466 TIGR01837 PHA_granule_1 poly(h 32.1 3.3E+02 0.0072 23.4 9.8 18 197-214 26-43 (118)
467 PF08961 DUF1875: Domain of un 32.1 15 0.00033 35.8 0.0 41 239-279 123-163 (243)
468 PF04822 Takusan: Takusan; In 31.9 1.1E+02 0.0024 25.5 5.0 25 252-276 19-43 (84)
469 PF09766 FimP: Fms-interacting 31.8 2.1E+02 0.0045 29.0 7.9 46 234-279 104-149 (355)
470 KOG1510|consensus 31.7 2.1E+02 0.0045 26.2 7.0 30 242-271 95-124 (139)
471 TIGR03643 conserved hypothetic 31.7 38 0.00082 27.8 2.2 35 188-224 2-39 (72)
472 cd07627 BAR_Vps5p The Bin/Amph 31.6 3E+02 0.0064 25.5 8.4 54 228-281 105-165 (216)
473 PF10458 Val_tRNA-synt_C: Valy 31.6 1E+02 0.0022 23.7 4.5 13 246-258 5-17 (66)
474 PF12938 M_domain: M domain of 31.5 1.8E+02 0.0038 28.6 7.0 12 208-219 144-155 (235)
475 PF10481 CENP-F_N: Cenp-F N-te 31.3 1.7E+02 0.0036 29.8 6.9 78 192-276 10-91 (307)
476 TIGR02933 nifM_nitrog nitrogen 31.2 1.2E+02 0.0025 28.9 5.7 36 177-213 43-78 (256)
477 PRK05724 acetyl-CoA carboxylas 31.1 1.1E+02 0.0025 30.9 5.9 25 263-287 32-56 (319)
478 smart00340 HALZ homeobox assoc 31.1 1.3E+02 0.0029 22.6 4.8 24 243-266 10-33 (44)
479 PF10985 DUF2805: Protein of u 31.1 38 0.00083 27.8 2.1 34 189-224 2-38 (73)
480 PF05531 NPV_P10: Nucleopolyhe 30.8 1.7E+02 0.0036 24.2 5.7 46 238-283 11-59 (75)
481 PRK01156 chromosome segregatio 30.8 3.9E+02 0.0084 29.6 10.4 96 197-296 349-456 (895)
482 TIGR01808 CM_M_hiGC-arch monof 30.8 1.6E+02 0.0035 23.3 5.6 34 241-274 3-36 (74)
483 PF09236 AHSP: Alpha-haemoglob 30.7 93 0.002 26.5 4.3 23 187-209 2-24 (89)
484 cd07623 BAR_SNX1_2 The Bin/Amp 30.7 3.3E+02 0.0072 25.4 8.6 20 239-258 150-169 (224)
485 COG3879 Uncharacterized protei 30.6 1.8E+02 0.004 28.7 7.0 31 242-272 54-84 (247)
486 KOG3091|consensus 30.6 1.3E+02 0.0029 32.5 6.5 85 190-301 327-416 (508)
487 cd04787 HTH_HMRTR_unk Helix-Tu 30.5 3.5E+02 0.0076 23.2 8.1 81 208-293 39-120 (133)
488 COG5185 HEC1 Protein involved 30.4 1.5E+02 0.0032 32.3 6.8 46 240-285 339-401 (622)
489 TIGR02047 CadR-PbrR Cd(II)/Pb( 30.3 3.5E+02 0.0076 23.1 9.2 65 208-277 39-111 (127)
490 PF10359 Fmp27_WPPW: RNA pol I 30.2 1.6E+02 0.0034 30.9 6.9 45 238-282 170-223 (475)
491 PF04799 Fzo_mitofusin: fzo-li 30.1 2E+02 0.0044 26.9 6.9 41 238-282 120-160 (171)
492 TIGR00293 prefoldin, archaeal 30.0 1.6E+02 0.0035 24.7 5.8 39 240-278 1-39 (126)
493 PF06120 Phage_HK97_TLTM: Tail 29.9 2.7E+02 0.0059 28.1 8.2 58 195-277 56-113 (301)
494 KOG2185|consensus 29.8 2E+02 0.0043 30.7 7.5 64 221-285 397-477 (486)
495 cd00520 RRF Ribosome recycling 29.7 4E+02 0.0087 24.4 8.8 74 182-274 94-176 (179)
496 PRK09973 putative outer membra 29.6 1.8E+02 0.0039 24.5 5.9 36 239-274 25-60 (85)
497 KOG3270|consensus 29.6 1.3E+02 0.0027 29.8 5.7 64 195-279 78-149 (244)
498 COG5034 TNG2 Chromatin remodel 29.6 3.5E+02 0.0076 27.2 8.7 94 189-286 12-110 (271)
499 PF08700 Vps51: Vps51/Vps67; 29.5 2.7E+02 0.0058 21.6 8.9 76 186-273 6-86 (87)
500 PRK00409 recombination and DNA 29.4 3.7E+02 0.008 30.2 10.0 93 186-287 491-583 (782)
No 1
>KOG3863|consensus
Probab=100.00 E-value=4.3e-58 Score=470.01 Aligned_cols=310 Identities=37% Similarity=0.514 Sum_probs=233.8
Q ss_pred cceeecccccccCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCC--CCCCcccCCcccccccccCC----
Q psy14684 3 ERVYFEHQYFYSMGSESPASSGSHRIPPPAVAQKKYHLYGRRLFHDHNSTAAST--SSDISSVDSAAIKFEMNDTD---- 76 (357)
Q Consensus 3 ~~~~~~~~~~~s~~~~~~~~~~~~~~~p~~vaqkk~~~~gkr~~~~q~~~~~~~--~~~~~~~~~~~~k~e~~~~~---- 76 (357)
+-.-+|++||+.+.++++ ..+..++| |.++|+ +.+..+-+..+.++.+- +...+++.... ++.+..+.
T Consensus 274 ~~~~~g~~~~~~~~~e~~--~~~~~~ep--~~~~~~-lsql~D~~~~~~s~Ls~~~~~n~~s~i~s~-~~~d~~~~~sig 347 (604)
T KOG3863|consen 274 EQPKPGTPFDPTIFAESS--DLPLAFEP--VTRPKS-LSQLFDGPPINNSALSEGIALNQASLISSQ-EDRDSCNQLSIG 347 (604)
T ss_pred ccCCCCCcccchhccccc--cccccCCC--ccChhh-hhhccCCCCCcccccCcccccccccccccc-cccccccccCcc
Confidence 445689999999999876 34445554 999999 99998886666665221 11111211111 23333322
Q ss_pred ----cCCCCCCCc-ccCCCCCCCCC-CcCcccccccccCC---CCCCccccccCCccCCCCCCCCCCCCCCCCCCCCCCc
Q psy14684 77 ----SARLPMLDA-ASCSSKYNSSD-DVKYSCRSDFARTS---HRPSLSELVSHNHTYSSSHSTSLAPETLGATSRNYSK 147 (357)
Q Consensus 77 ----~~~~~~~~~-GAvG~~~~~~p-e~~~~~~~~~~~~~---~~~~~~e~V~HnHTY~~~~~~~l~~~~~~~~~~~~~~ 147 (357)
++..++.+. |+||++ +| +++..|.+...... .+.+.++||.|||||+-+...++.|.+.++.. ..+
T Consensus 348 ~~~~se~~~~~~~e~~~~~~---lp~~~~~~~~~~ts~~~~~~~~~~tl~~v~~n~~y~l~~~~~~sp~~~~~~~--~~~ 422 (604)
T KOG3863|consen 348 TAGQSEPSSQSDSEGTVGGH---LPYSPSPSCVLPTSDYSVRGPQNTTLQHVSSNHTYSLGYGQSLSPLSIGSQQ--LPT 422 (604)
T ss_pred ccCCCCCccccccccccccc---cCCCCCccccccCCcccccCCCCCccceeccccceecCcCCCCCcccccCcc--CCC
Confidence 233444444 999994 56 68899998765443 35678999999999994310012233333321 111
Q ss_pred chhhHHHHHHhhhhhhhcc---hhhhhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q psy14684 148 DKTAKYIEKLKMVDFAARK---SEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGK 224 (357)
Q Consensus 148 ~~~~~~~~~~~~s~~~~~~---~~~~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgK 224 (357)
..+.+ +.+...... ..+.++||||.||++++|||++|+||||||++||+||++|.||++||++|||||||||
T Consensus 423 p~~~~-----~~s~~~~~~~~~~~~~~~srde~ra~a~~iPF~vd~IinLp~~dFne~ls~~~lte~QLslIrDIRRRgK 497 (604)
T KOG3863|consen 423 PQQEQ-----KSSGDGVTTDTTGNEEHLSRDEHRAKALHIPFSVDEIINLPVDDFNEMLSKYKLTEEQLSLIRDIRRRGK 497 (604)
T ss_pred ccccc-----cCCCCcccccccCcccccchhhhhhhhccCCCchHHhcCCcHHHHHHHHHhcccCHHHHHHhhccccccc
Confidence 12111 111111111 2256799999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccceeec
Q psy14684 225 NKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQT 304 (357)
Q Consensus 225 NRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP~ey~Lq~~ 304 (357)
||||||||||||||+|.+||++|+.|+.++++|++|+.++.+++..|+++|..||++||++|+|++|+||+|.+|.||++
T Consensus 498 NkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~eg~~~sp~~yalq~a 577 (604)
T KOG3863|consen 498 NKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDEEGNPYSPSQYALQQA 577 (604)
T ss_pred cchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCcC
Q psy14684 305 NDGNVELVRRQPPHLASQGHPSTSSKD 331 (357)
Q Consensus 305 ~dG~V~lVPr~~~~~~~~~~~~~~~~~ 331 (357)
+||+|+||||..-.-++ ..+.+++
T Consensus 578 ~dGsi~l~pr~~~~~~~---~~~~a~~ 601 (604)
T KOG3863|consen 578 ADGSIKLAPREKRQSTT---DRELAKG 601 (604)
T ss_pred ccCceeecchhhccccc---ccccccc
Confidence 99999999997766544 4444443
No 2
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=99.91 E-value=2.2e-27 Score=192.29 Aligned_cols=92 Identities=39% Similarity=0.579 Sum_probs=85.0
Q ss_pred CChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 186 IPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 186 FSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
||+|+||+|||+|||++| .+||++|+..||++|||+|||+|||+||+||++.+.+||+++..|+.+.+.|..|+..+.
T Consensus 1 ~s~eeL~~m~v~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~ 78 (92)
T PF03131_consen 1 FSDEELVSMSVREFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELR 78 (92)
T ss_dssp --HHHHHHS-HHHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_pred CCHHHHhhCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999 679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14684 266 QECSRVKSQFSQLY 279 (357)
Q Consensus 266 ~e~~~LKqkl~~L~ 279 (357)
.+++.|+++++.|.
T Consensus 79 ~e~~~lk~~~~~L~ 92 (92)
T PF03131_consen 79 QERDELKRKLEQLQ 92 (92)
T ss_dssp HCCCCCCCCHHHH-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998873
No 3
>KOG4196|consensus
Probab=99.90 E-value=3.3e-23 Score=179.71 Aligned_cols=113 Identities=24% Similarity=0.358 Sum_probs=107.1
Q ss_pred CCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14684 184 IPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEY 263 (357)
Q Consensus 184 IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~ 263 (357)
--||+|+||.|+|+|||..|.+ |+.|++..+|+.||++|||+|||+||-|++++.++||.+...|.++.++|..|+.+
T Consensus 22 d~lsDd~LvsmSVReLNr~LrG--~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 22 DRLSDDELVSMSVRELNRHLRG--LSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred CCcCHHHHHHhhHHHHHHHhcC--CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccc
Q psy14684 264 LSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEF 299 (357)
Q Consensus 264 L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP~ey 299 (357)
+..|++.|+.+|+.|+..+| .+....+.|.+|+.|
T Consensus 100 ~~~E~da~k~k~e~l~~~~~-~~~~~~~~pS~p~~~ 134 (135)
T KOG4196|consen 100 LRRELDAYKSKYEALQNSAV-SVGASPVSPSSPEFA 134 (135)
T ss_pred HHHHHHHHHHHHHHHHhhhh-hccCCCCCCcccccc
Confidence 99999999999999999999 567677788888755
No 4
>smart00338 BRLZ basic region leucin zipper.
Probab=99.29 E-value=1.6e-11 Score=93.43 Aligned_cols=61 Identities=33% Similarity=0.475 Sum_probs=58.0
Q ss_pred HHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 216 IRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 216 IRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+|.+||+.+||+||+.||.||.+.|.+||++|..|..+++.|..++..|..++..|++.+.
T Consensus 4 ~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 4 EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999999998764
No 5
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.12 E-value=2.6e-10 Score=86.68 Aligned_cols=60 Identities=32% Similarity=0.439 Sum_probs=54.9
Q ss_pred HHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 216 IRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 216 IRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+..+|+.+||+||++||.||.+.|..||..|..|..+++.|..++..|..++..|+..+
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567899999999999999999999999999999999999999999999998888887764
No 6
>KOG0837|consensus
Probab=99.02 E-value=8.2e-10 Score=105.96 Aligned_cols=71 Identities=34% Similarity=0.448 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 209 SETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 209 SeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
-.+..++||-.|+|.+||+||.+||+||||+|..||+.|+.|+.++..|-.+...|+....++++++..-.
T Consensus 198 d~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi 268 (279)
T KOG0837|consen 198 DMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHI 268 (279)
T ss_pred cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556779999999999999999999999999999999999999999887777777777777777665433
No 7
>KOG4005|consensus
Probab=98.88 E-value=7.5e-09 Score=98.82 Aligned_cols=56 Identities=32% Similarity=0.417 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 207 ~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
+||.||.. .||++|||||||+.|.||..++.++|++|.+|..|+++|+.|.+.|++
T Consensus 63 HLS~EEK~----~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 63 HLSWEEKV----QRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred ccCHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38988876 599999999999999999999999999999999999988877766543
No 8
>KOG0709|consensus
Probab=98.81 E-value=1.1e-08 Score=104.29 Aligned_cols=99 Identities=23% Similarity=0.343 Sum_probs=88.9
Q ss_pred hhhcchHHHHHH-HcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHH
Q psy14684 169 EEQMTRDEKKAR-ALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEV 247 (357)
Q Consensus 169 ~~~~SRDE~RA~-al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV 247 (357)
+..|+.+|+|.- +-+|+++. .+.||+.|...+|+|||+.|||..||-.|+||.+.|..||..|
T Consensus 218 ~L~LteeEkrLL~kEG~slPs----------------~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv 281 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPS----------------KLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRV 281 (472)
T ss_pred ceeccHHHHHHHHhccCcCcc----------------cCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhh
Confidence 678999998876 67888884 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
...-.||+.|.+.+.+|..+...|-++|.+|.--|.
T Consensus 282 ~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 282 SAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred hhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 999999999999999999888888888887765554
No 9
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.80 E-value=1.9e-08 Score=74.60 Aligned_cols=49 Identities=33% Similarity=0.472 Sum_probs=44.1
Q ss_pred HHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 218 DIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 218 dIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
..||. +|++||++||.||...+..|+.+|..|..++..|..++..|..|
T Consensus 6 ~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 6 RERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34666 99999999999999999999999999999999998888888764
No 10
>KOG4571|consensus
Probab=98.08 E-value=1.4e-05 Score=78.11 Aligned_cols=62 Identities=26% Similarity=0.387 Sum_probs=57.9
Q ss_pred HHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 219 IRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 219 IRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
.|+|.+||+||.+.|+||......|+.|+..|..+|++|+....+|.+||+.||+-|...|.
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999998876654
No 11
>KOG3584|consensus
Probab=97.65 E-value=7.4e-05 Score=73.59 Aligned_cols=52 Identities=25% Similarity=0.479 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14684 211 TQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEY 263 (357)
Q Consensus 211 eQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~ 263 (357)
|+..+-|.|| =.|||.||..||.||++.|.=||..|..|..+|..|..|+..
T Consensus 286 ee~trKRevR-LmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKt 337 (348)
T KOG3584|consen 286 EEATRKREVR-LMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKT 337 (348)
T ss_pred hhhhhHHHHH-HHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHH
Confidence 3444445554 679999999999999999999999999999998866555433
No 12
>KOG4343|consensus
Probab=97.45 E-value=0.00031 Score=73.78 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 211 TQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 211 eQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
.+...+|..-|..|||.+|+-.|+||.+.+..||..+.+|..|++.|++|+..|++.+..|-
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 34455666668899999999999999999999999999999999988888888777777664
No 13
>KOG3119|consensus
Probab=97.17 E-value=0.0013 Score=63.21 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=53.6
Q ss_pred HHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 219 IRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 219 IRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
..||.||=+||++||.++.....+....|..|..|++.|+.++.+|..++..|++-+..+.
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567899999999999999999999999999999999999999999888888888776554
No 14
>KOG1414|consensus
Probab=95.38 E-value=0.0014 Score=65.93 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhccchHHHHh---hhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 208 LSETQLSLIRDIRRRGKNKVAAQN---CRKRKLDQILSLADEVKQMK-DKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 208 LSeeQl~lIRdIRRRgKNRvAAQn---CRKRKLd~I~~LEdEV~~Lk-~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++.++. .|..+||.+|++||+. ||.++......|+.+|+.|. ..+.-|..++..|..+.+.+...+. +.+.+|
T Consensus 147 ~~~~~~--~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~-~h~~~~ 223 (395)
T KOG1414|consen 147 LTPEPE--EKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELN-THRPPC 223 (395)
T ss_pred CCCcch--HHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHh-ccCCCc
Confidence 444444 3567789999999999 99999999999999999999 8888899999999999998888774 566666
Q ss_pred hhc
Q psy14684 284 NAL 286 (357)
Q Consensus 284 ~~L 286 (357)
...
T Consensus 224 ~~~ 226 (395)
T KOG1414|consen 224 SGN 226 (395)
T ss_pred ccC
Confidence 433
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.77 E-value=0.19 Score=40.23 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=36.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+|.|..|+.++..|+.++..|..++..|..+...|++.-......+
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999988888777777777777777766655443
No 16
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=93.86 E-value=0.32 Score=41.13 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=42.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccceeecCCCcEE--EEecCC
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVE--LVRRQP 316 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP~ey~Lq~~~dG~V~--lVPr~~ 316 (357)
....|+.++.+++.++++|+.++..|..++..|+....-+ -+..|.. |-+..+|+|+ |+|-..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyi----Ee~AR~~-----------Lg~vk~gEivy~~~~~~~ 92 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAI----EERARNE-----------LGMVKPGETFYRIVPDAS 92 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH----HHHHHHH-----------cCCCCCCCEEEEeCCCCc
Confidence 3456667777777777777777777777777776632111 1223322 3345566664 455555
Q ss_pred CCCCCCCCCC
Q psy14684 317 PHLASQGHPS 326 (357)
Q Consensus 317 ~~~~~~~~~~ 326 (357)
+...+.|.+-
T Consensus 93 ~~~~~~~~~~ 102 (105)
T PRK00888 93 KRAAAAGQPP 102 (105)
T ss_pred CCCCCCCCCC
Confidence 5555555543
No 17
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.72 E-value=1.4 Score=41.00 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhhHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 211 TQLSLIRDIRRRGKNKVAAQNCRKRKLD-QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 211 eQl~lIRdIRRRgKNRvAAQnCRKRKLd-~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+...+...+++.+.++....--+++++ .|.+||..+-.|+.+...+..++.....++.+|+...+.|-+.
T Consensus 103 ~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 103 DDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555656655544444443 6677777777777765555544444444444444444444433
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=92.21 E-value=0.42 Score=40.25 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=47.1
Q ss_pred CCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHH-hccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14684 185 PIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRR-RGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 185 PFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRR-RgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kE 260 (357)
+||+|||+.| |-.++.+|= .+|+ |.-.|+.|.+-=+--+..|..|..||++|-.....|+.-
T Consensus 16 risddqi~dL-vsKLq~llP-------------e~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 16 RISEDQINDL-IIKLQQLLP-------------ELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred CCCHHHHHHH-HHHHHHHCh-------------HHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899888777 555555532 2343 555699999888888889999999999999888877743
No 19
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.08 E-value=0.55 Score=40.52 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=24.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRV----------------KSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L----------------Kqkl~~L~q~Vf 283 (357)
+.+..|...|..|..||..|.-|+..|+..++++ ++.|..||++.|
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~~~~~~g~~NL~~LY~EGF 83 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKKKKEGEGKDNLARLYQEGF 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHcCc
Confidence 3444444555555555555555555555555543 245666676655
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.56 E-value=0.66 Score=39.66 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
|..|...+..|..||..|..|+..|+..+.
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 21
>PRK04406 hypothetical protein; Provisional
Probab=90.35 E-value=2.9 Score=33.67 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=38.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++|.+||..+.-+..-.+.|...+.+..++++.|+.+|..|.+.+-
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888888888888888877664
No 22
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=89.83 E-value=2 Score=37.14 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=10.6
Q ss_pred HhcCCHHHHHHHHhc
Q psy14684 191 IINLPMDEFNERLSK 205 (357)
Q Consensus 191 IVnLPV~EFNelLs~ 205 (357)
|-+||.+|++++|..
T Consensus 1 L~~lS~~eL~~Ll~d 15 (150)
T PF07200_consen 1 LQDLSTEELQELLSD 15 (150)
T ss_dssp GGS-TTHHHHHHHHH
T ss_pred CCcCCHHHHHHHHcC
Confidence 456888888888875
No 23
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=89.81 E-value=1.1 Score=34.61 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+|.+||.++..+......+++|+.++..+++.+.+.+..|
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999988888876554
No 24
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.78 E-value=1.8 Score=40.28 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=57.9
Q ss_pred CHHHHHHHHhcCCCCHHHH--HHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 195 PMDEFNERLSKYDLSETQL--SLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 195 PV~EFNelLs~~~LSeeQl--~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
|...|+..++. |++-|. =-++-+|.|....+.-++++...++....||.++.+-..++.+|..++.+|...+.+|+
T Consensus 67 ~~~~f~~~~~t--l~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~ 144 (190)
T PF05266_consen 67 SRSSFESLMKT--LSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQ 144 (190)
T ss_pred cHHHHHHHHHH--HHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44555555543 222221 02566788999999999999999999999998888877777777777777777777777
Q ss_pred HHHHHH
Q psy14684 273 SQFSQL 278 (357)
Q Consensus 273 qkl~~L 278 (357)
.+...+
T Consensus 145 ~~~~~~ 150 (190)
T PF05266_consen 145 RQAAKL 150 (190)
T ss_pred HHHHHH
Confidence 764333
No 25
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=89.78 E-value=1.2 Score=38.01 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+|..|-.++..|+.+...|..|++.|..|...|+.+|..+-+
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666667777777777777777777777777766543
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.75 E-value=1.5 Score=36.18 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=29.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEY-------LSQECSRVKSQFS 276 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~-------L~~e~~~LKqkl~ 276 (357)
+|.|.-|+-||+.|+.++..|..|... |..+...|++.-.
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 788999999999999999988888666 4444555544433
No 27
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=89.11 E-value=3.1 Score=43.86 Aligned_cols=105 Identities=15% Similarity=0.242 Sum_probs=77.7
Q ss_pred CChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHH--hccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14684 186 IPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRR--RGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEY 263 (357)
Q Consensus 186 FSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRR--RgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~ 263 (357)
.+.++|.+| +...+..|.. ||..++.-|=.|+- |==.|++++==+|+ ..+..+...+..|..+++.++.|+.+
T Consensus 397 ~t~~~i~~m-l~~V~~ii~~--Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~--~~~~k~~~~~~~l~~kr~e~~~e~~~ 471 (507)
T PF05600_consen 397 QTAESIEEM-LSAVEEIISQ--LTNPRTQHLFMIKSSPRYVDRLVESLQQKL--KQEEKLRRKREDLEEKRQEAQEEQQE 471 (507)
T ss_pred cCHHHHHHH-HHHHHHHHHH--hcCHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777 6667777777 88888888877876 33477887765544 45556677778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC-CCCCCC
Q psy14684 264 LSQECSRVKSQFSQLYKHVFNALRDS-DGNPYS 295 (357)
Q Consensus 264 L~~e~~~LKqkl~~L~q~Vf~~LrD~-~G~P~S 295 (357)
+.-.++.|.++-..|...|-..|..- .|+|++
T Consensus 472 l~pkL~~l~~~Tr~Lq~~iE~~ISk~y~gR~Vn 504 (507)
T PF05600_consen 472 LEPKLDALVERTRELQKQIEADISKRYKGRPVN 504 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeee
Confidence 88888888888888888777766654 577764
No 28
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.84 E-value=4 Score=37.99 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=47.2
Q ss_pred ccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 223 GKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 223 gKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
.|.|.+-++-+. ++..++.++..|+-+.+-|......+..++++|..+|.....+|.+.
T Consensus 82 ~kdK~~L~~~k~----rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 82 EKDKQSLQNLKA----RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554444433 45678999999999999999999999999999999999998888865
No 29
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.61 E-value=2.2 Score=34.98 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+|.|.-|+-||+.|+.++..|..|...+...+..|...-++|.+
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888899999999999988888877666666655555444443
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.60 E-value=4.9 Score=37.83 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
++.++.+|+.++++|.+|...+..+++.++.++..+.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555554444444
No 31
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=88.39 E-value=2.6 Score=39.92 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=38.4
Q ss_pred hhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHH----HHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 189 NDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLD----QILSLADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 189 deIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd----~I~~LEdEV~~Lk~EkekL~kEr~~L 264 (357)
++|..||-+||-. ++.+++ ||.+||-.-.|+.|-.=+.+=+. ++...=.||..|+..|++|+.|+.+|
T Consensus 3 ~~l~~~sDeell~------~skeel--~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqEL 74 (195)
T PF10226_consen 3 EDLSKVSDEELLR------WSKEEL--VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQEL 74 (195)
T ss_pred cccccCCHHHHHh------cCHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444422 456555 66777777777776655554433 22233356666777777777666554
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.47 E-value=3.6 Score=33.04 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=26.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+..|..+...|..+++.|..|+.+|..+......++..|-.
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666543
No 33
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.21 E-value=3.5 Score=32.35 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=37.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++|.+||..+.-+..-.+.|...+....++++.|+.++..|...+-
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888888888888888888776554
No 34
>KOG3003|consensus
Probab=87.17 E-value=7.3 Score=37.91 Aligned_cols=108 Identities=26% Similarity=0.288 Sum_probs=63.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcc------chHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy14684 200 NERLSKYDLSETQLSLIRDIRRRGK------NKVAAQNCRKRKLDQILSLADEVKQMKDKKRH--LMQEHEYLSQECSRV 271 (357)
Q Consensus 200 NelLs~~~LSeeQl~lIRdIRRRgK------NRvAAQnCRKRKLd~I~~LEdEV~~Lk~Ekek--L~kEr~~L~~e~~~L 271 (357)
.+|..+|..|-++.+ .+|+|.+ -.-|-|+-+|+=++..+.|+.-++.+..+.+. -...+..+-.=+..+
T Consensus 87 ~eLkdk~~rs~Ad~e---Nlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~d~~~~L~~l~eGl~mt 163 (236)
T KOG3003|consen 87 QELKDKYLRSLAECE---NLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKEDQKKDLKDLFEGLSMT 163 (236)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcccccchHHHHHHhHHHHH
Confidence 455555544544444 4455553 12345888888899999999999998888321 122222222222223
Q ss_pred HHHHHHHHHHHhhhcc----CCCCCCCCCcccceeec-CC-----CcEEEEec
Q psy14684 272 KSQFSQLYKHVFNALR----DSDGNPYSPFEFSLEQT-ND-----GNVELVRR 314 (357)
Q Consensus 272 Kqkl~~L~q~Vf~~Lr----D~~G~P~SP~ey~Lq~~-~d-----G~V~lVPr 314 (357)
+.+ ...||.... |+=|.++.|+++-.-+. +| |.|++|-+
T Consensus 164 e~q----l~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k 212 (236)
T KOG3003|consen 164 EAQ----LKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTK 212 (236)
T ss_pred HHH----HHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEec
Confidence 333 335665544 88899999998865443 43 56666544
No 35
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.13 E-value=2.3 Score=36.73 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+|..|-.++..|+.+...|..|+..|..|.+.||.+|..+
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556667777777777777778888888888887765
No 36
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.10 E-value=1.9 Score=31.75 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
||.+-+.|+..-+.|..+...|..+.+.|+.++..|-
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555545444444444444444444444443
No 37
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=86.96 E-value=8.3 Score=38.77 Aligned_cols=95 Identities=23% Similarity=0.368 Sum_probs=56.4
Q ss_pred hhhhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcC-------CCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHH
Q psy14684 168 EEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKY-------DLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQI 240 (357)
Q Consensus 168 ~~~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~-------~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I 240 (357)
+-.+|-+...+....+. .+++|-=+|++||....-.. ..++.++.+ +|+.+- +.+.
T Consensus 41 E~~hL~kEI~~C~~F~s--~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml---------~RL~~E------L~~R 103 (355)
T PF09766_consen 41 EKSHLQKEIKKCLDFKS--KYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLML---------ARLEFE------LEQR 103 (355)
T ss_pred HHHHHHHHHHHHhccCC--CCCCCcCccHHHHHHhChhhccccccCCCChHHHHH---------HHHHHH------HHHH
Confidence 55678887777666554 66689999999999865443 244555332 122222 2334
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
..|+.+.+.|+.++.+|..|+...+..++.|..+|..|.
T Consensus 104 k~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 104 KRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLK 142 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455555566666666666666665555555555555444
No 38
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=86.68 E-value=4.7 Score=30.69 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=19.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
+..+..++.+|+.+.++|..|+..|..+++.|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666666666666
No 39
>PRK04325 hypothetical protein; Provisional
Probab=86.64 E-value=6.6 Score=31.44 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=38.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++|.+||..+.-+..-.+.|...+.+..++++.|+.+|..|...+-
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899888888888888888888888888888888888876654
No 40
>PRK00295 hypothetical protein; Provisional
Probab=85.96 E-value=4.9 Score=31.70 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++|.+||..+.-+..-.+.|...+.+..++++.|+.+|..|...+-
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888888888888888888888888888877776554
No 41
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=85.07 E-value=16 Score=28.86 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhccc
Q psy14684 199 FNERLSKYDLSETQLSLIRDIRRRGKN 225 (357)
Q Consensus 199 FNelLs~~~LSeeQl~lIRdIRRRgKN 225 (357)
+..+....+||++|...|+.|++.-..
T Consensus 33 ~~~~~~~l~Lt~eQ~~~l~~~~~~~~~ 59 (125)
T PF13801_consen 33 HPMLADMLNLTPEQQAKLRALMDEFRQ 59 (125)
T ss_dssp HHHHHHHS-TTHHHHHHHHHHHHHHHH
T ss_pred chhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 445556677999999999999875543
No 42
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=84.94 E-value=4 Score=39.47 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=39.7
Q ss_pred HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 227 VAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 227 vAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
|.+|+=|.| .+..+||.|+..+.++...|+.|+..|++..-+|=+|+.=|
T Consensus 84 VtsQRDRFR--~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 84 VTSQRDRFR--QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 45679999999999999999999999999888888887633
No 43
>PRK00736 hypothetical protein; Provisional
Probab=84.38 E-value=6.4 Score=31.05 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++|..||..+.-+..-.+.|...+.+-.++++.|+.+|..|...+-
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899888888888888888888888888888888888876654
No 44
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.34 E-value=4.5 Score=33.23 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~ 268 (357)
++.|..|..+...|..+.+.|..++..+.+++
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555555555544444444333
No 45
>PRK02119 hypothetical protein; Provisional
Probab=84.34 E-value=6.2 Score=31.56 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=37.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++|.+||..+.-+..-.+.|...+.+..++++.|+.+|..|.+.+-
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888888888888888888876553
No 46
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.97 E-value=11 Score=29.96 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=37.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++|.+||..+.-+..-.+.|...+.+..++++.|+.++..|...+-
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888888888888888888776654
No 47
>PRK11637 AmiB activator; Provisional
Probab=83.86 E-value=9.9 Score=38.45 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
|..++.++..+..+...+..++..+..++..++.++..+...+-
T Consensus 84 i~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 84 ISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555444443333
No 48
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.80 E-value=23 Score=30.84 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=45.6
Q ss_pred cCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHH-HHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14684 182 LNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIR-DIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 182 l~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIR-dIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kE 260 (357)
-++++.+..|||+ ++.||..+.=.-++.+-+- .+|+..-.-...+++-.|=.+.+..+|.++..+..+-..|..+
T Consensus 27 ~~~~~~~~~vin~----i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 27 EESEDNDVRVINC----IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred ccccccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777776 3344433222222222222 2222222222233333443455666666666655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14684 261 HEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 261 r~~L~~e~~~LKqkl~~L~ 279 (357)
+..+...+...++.+..|.
T Consensus 103 ~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 103 LKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544
No 49
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.25 E-value=5.9 Score=29.22 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
..|-.+.+.|+.+.+.|++|+..|..++..|+.++.
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457778889999999999999999999999998764
No 50
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.00 E-value=17 Score=37.68 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
|..-..-+..+..+|..++..+..++.++++++..|.+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666677777777777766665543
No 51
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=82.37 E-value=6.9 Score=29.68 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
..+..|..+...|..++..|..++..|+..+..|..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56667778888888888888888888888877776554
No 52
>KOG1414|consensus
Probab=82.33 E-value=0.32 Score=49.29 Aligned_cols=51 Identities=27% Similarity=0.509 Sum_probs=42.1
Q ss_pred ccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy14684 223 GKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLM-QEHEYLSQECSRVKS 273 (357)
Q Consensus 223 gKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~-kEr~~L~~e~~~LKq 273 (357)
.+||.||-+||.||.-++..|+.+...+..++..|. .|...|..++..+..
T Consensus 291 ern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~ 342 (395)
T KOG1414|consen 291 ERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQ 342 (395)
T ss_pred hhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhcc
Confidence 489999999999999999999999999999999888 555555555555543
No 53
>KOG3863|consensus
Probab=81.89 E-value=0.48 Score=51.05 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=56.5
Q ss_pred HHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHH
Q psy14684 176 EKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQ 239 (357)
Q Consensus 176 E~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~ 239 (357)
|+-+-.-.|+....+|..|..+.|.++++--.++.-+..++++++|+|+|++|+..|+.+..+.
T Consensus 533 Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~eg~~~sp~~yalq~a~dGsi~l~pr~~~~~~~~~ 596 (604)
T KOG3863|consen 533 ERDELDSTLGVMKQQLSELYQEVFQQLRDEEGNPYSPSQYALQQAADGSIKLAPREKRQSTTDR 596 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHhhccCceeecchhhccccccc
Confidence 4444456899999999999999999999998899999999999999999999999999985543
No 54
>PRK10869 recombination and repair protein; Provisional
Probab=81.48 E-value=11 Score=39.83 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=44.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccC
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF-SQLYKHVFNALRD 288 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl-~~L~q~Vf~~LrD 288 (357)
+.+++.+.++++.+..|+.+.++|..+...+..++.+.|.+. ..|...|-..|++
T Consensus 330 ~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 330 LEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888899999999999999999999999888888888774 5566666665554
No 55
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.23 E-value=12 Score=34.54 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
..|+.++..|+.+++.|.+|+..|..+...+++.+..|.+-
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888888888888888888777743
No 56
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=81.11 E-value=8.3 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.577 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLYKHVFN 284 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~ 284 (357)
....|..|++.|..++..|.+++..||..+|.
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567899999999999999999999999884
No 57
>PRK11637 AmiB activator; Provisional
Probab=80.83 E-value=21 Score=36.22 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFN 284 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~ 284 (357)
-..|..++.++..+..+.++|..++..+..+++.++..|..+....+.
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888888888888888888888777766664
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.74 E-value=22 Score=33.59 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=27.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+.|.+|+.+..+|+.+.+.++.|+..|..+++.++...
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777777777654
No 59
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT.
Probab=80.73 E-value=6.4 Score=32.51 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=45.6
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccceeecCCCc
Q psy14684 229 AQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGN 308 (357)
Q Consensus 229 AQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP~ey~Lq~~~dG~ 308 (357)
|.+.|+||.....-||++. ..-.++|++....-........+. . .-..........+.+|.....-.+.+|+
T Consensus 7 aE~ArkRk~~~eKk~EEeK---~eTInKLLkkqa~~k~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~IR~v~~~~G~ 78 (89)
T PF04795_consen 7 AENARKRKNQSEKKLEEEK---METINKLLKKQATRKKREPKDKEG----E-EDSAQEKKRRAPKPNPPMIRWVSNKNGS 78 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccccccchhhhhh----h-hhccccccccccCCCCCEEEEEECCCce
Confidence 7789999999988888776 345566666655111111111111 0 0001112222234566766777789999
Q ss_pred EEEEecC
Q psy14684 309 VELVRRQ 315 (357)
Q Consensus 309 V~lVPr~ 315 (357)
+|.||-.
T Consensus 79 ~vs~P~~ 85 (89)
T PF04795_consen 79 RVSVPEE 85 (89)
T ss_pred EEEecCC
Confidence 9999974
No 60
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=80.54 E-value=6.1 Score=36.14 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=38.6
Q ss_pred HhcCCHHHHHHHH--hcCCCCHHHHHHHHHHHHh-----ccchHHH-HhhhhhHHHHHHhHHHH
Q psy14684 191 IINLPMDEFNERL--SKYDLSETQLSLIRDIRRR-----GKNKVAA-QNCRKRKLDQILSLADE 246 (357)
Q Consensus 191 IVnLPV~EFNelL--s~~~LSeeQl~lIRdIRRR-----gKNRvAA-QnCRKRKLd~I~~LEdE 246 (357)
+..||+-=-..-- +.|+||+++++.||++|.- -.+++|. .+|-.-.+-.+..+-.+
T Consensus 67 ~~~lPp~l~~~~~~~k~y~Lt~e~i~Eir~LR~~DP~~wTr~~LAkkF~~S~~fV~~v~~~~~e 130 (164)
T PF12824_consen 67 SEDLPPILRYKSPHEKKYHLTPEDIQEIRRLRAEDPEKWTRKKLAKKFNCSPLFVSMVAPAPKE 130 (164)
T ss_pred hhhCCccccccccccccccCCHHHHHHHHHHHHcCchHhhHHHHHHHhCCCHHHHHHhcCCCHH
Confidence 5556532222222 5699999999999999975 3567776 48888888777766543
No 61
>PRK10455 periplasmic protein; Reviewed
Probab=80.33 E-value=38 Score=30.76 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhc
Q psy14684 201 ERLSKYDLSETQLSLIRDIRRRG 223 (357)
Q Consensus 201 elLs~~~LSeeQl~lIRdIRRRg 223 (357)
.|+++..||++|..-||+|++..
T Consensus 50 ~m~~~L~LT~~Qrqqir~im~~~ 72 (161)
T PRK10455 50 MMFKGLNLTDAQKQQIRDIMKAQ 72 (161)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHH
Confidence 36788899999999999998754
No 62
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.94 E-value=7.8 Score=37.19 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=46.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhcc---CCCCCCCCCc
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH--VFNALR---DSDGNPYSPF 297 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~--Vf~~Lr---D~~G~P~SP~ 297 (357)
+-|..||..+++++.++++.+..+..+..+...|++.+..+-.+ .+..|. ++++..+++.
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~eE~~~~~~~~ 124 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLEEEELSKISPD 124 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccccCHH
Confidence 56788999999999999999999999999999999999888776 223343 3445556543
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.77 E-value=18 Score=34.14 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=23.7
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 233 RKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 233 RKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+..-++.+..|+.+++.|+..+++|.+.+..+..++.+|.+++
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666555555555555555443
No 64
>KOG4196|consensus
Probab=79.67 E-value=20 Score=32.42 Aligned_cols=81 Identities=28% Similarity=0.512 Sum_probs=43.7
Q ss_pred CCCCHHHHHHH--HHHHH--hccch--HHHHhhhhhHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 206 YDLSETQLSLI--RDIRR--RGKNK--VAAQNCRKRKLD--------QILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 206 ~~LSeeQl~lI--RdIRR--RgKNR--vAAQnCRKRKLd--------~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
-.||+++|.-| |++=| ||=+| |-=-+=|.|-|- ++..++ +..+|..++..|.+|+..|..|+.+|
T Consensus 22 d~lsDd~LvsmSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~-Qk~eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 22 DRLSDDELVSMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQ-QKHELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred CCcCHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788887643 44444 44333 332223333332 222222 23346666666777777777777777
Q ss_pred HHHHHHHHHHHhhhccC
Q psy14684 272 KSQFSQLYKHVFNALRD 288 (357)
Q Consensus 272 Kqkl~~L~q~Vf~~LrD 288 (357)
+..+. .|...|..|..
T Consensus 101 ~~E~d-a~k~k~e~l~~ 116 (135)
T KOG4196|consen 101 RRELD-AYKSKYEALQN 116 (135)
T ss_pred HHHHH-HHHHHHHHHHh
Confidence 77764 46667766654
No 65
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.55 E-value=20 Score=35.34 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=6.6
Q ss_pred hhhhhhcccccc
Q psy14684 36 KKYHLYGRRLFH 47 (357)
Q Consensus 36 kk~~~~gkr~~~ 47 (357)
.==.|.|-++..
T Consensus 18 ~FL~~~~I~F~d 29 (325)
T PF08317_consen 18 DFLNMTGIRFYD 29 (325)
T ss_pred HHHHHhCceeCC
Confidence 334566766644
No 66
>PRK14127 cell division protein GpsB; Provisional
Probab=79.49 E-value=8.3 Score=33.39 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=17.3
Q ss_pred CCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHH
Q psy14684 183 NIPIPVNDIINLPMDEFNERLSKYDLSETQLSL 215 (357)
Q Consensus 183 ~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~l 215 (357)
.+++|..+|.+- +|..-+++ +..+|+..
T Consensus 3 ~~~LTp~DI~~K---eF~~~~RG--Yd~~EVD~ 30 (109)
T PRK14127 3 SIKLTPKDILEK---EFKTSMRG--YDQDEVDK 30 (109)
T ss_pred CCCCCHHHHhhC---ccCCCCCC--CCHHHHHH
Confidence 356677777654 56665554 66777754
No 67
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=78.89 E-value=5.8 Score=27.89 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 254 KRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 254 kekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
-.+|..|.++|++....||.+|++|-+
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777888888888888888887754
No 68
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.54 E-value=7.7 Score=42.38 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=13.8
Q ss_pred hcchHHHHHHHcCCCCChhhHh
Q psy14684 171 QMTRDEKKARALNIPIPVNDII 192 (357)
Q Consensus 171 ~~SRDE~RA~al~IPFSvdeIV 192 (357)
.|.+=|+++..++|+.-++.|-
T Consensus 360 kl~~vEr~~~~~g~~~d~~rik 381 (652)
T COG2433 360 KLEKVERKLPELGIWKDVERIK 381 (652)
T ss_pred HHHHHHHhcccccchhhHHHHH
Confidence 5566667777777755555544
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.49 E-value=22 Score=34.54 Aligned_cols=90 Identities=19% Similarity=0.345 Sum_probs=52.6
Q ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhh--H--------HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 195 PMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKR--K--------LDQILSLADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 195 PV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKR--K--------Ld~I~~LEdEV~~Lk~EkekL~kEr~~L 264 (357)
-+++|....+. -+.++..++....+..++++|-.--+. . .+++..|++++..|..+.++|..++..+
T Consensus 53 e~e~le~qv~~---~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 53 ELEDLENQVSQ---LESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554 334444454444455566544322111 1 2356677777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 265 SQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 265 ~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
...+..++..|..+-..+...+.
T Consensus 130 ~~~~~~~e~~~~e~~~~~e~e~~ 152 (239)
T COG1579 130 KERLERLEKNLAEAEARLEEEVA 152 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666666655444
No 70
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.34 E-value=15 Score=33.22 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
++.+.+.+..|.++|++|+.....+++.||.+.+.|..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667777777777777778888888888777654
No 71
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=78.33 E-value=2.3 Score=38.54 Aligned_cols=37 Identities=16% Similarity=0.454 Sum_probs=31.4
Q ss_pred CCChhhHhcCCHHHHHHHHhc-------CCCCHHHHHHHHHHHH
Q psy14684 185 PIPVNDIINLPMDEFNERLSK-------YDLSETQLSLIRDIRR 221 (357)
Q Consensus 185 PFSvdeIVnLPV~EFNelLs~-------~~LSeeQl~lIRdIRR 221 (357)
-++.|+|.+||.+||-+||.. -+|+..+..||+.||+
T Consensus 19 G~~l~~L~~m~~~e~~~L~~aR~RR~~~RGl~~~~~~LlkKirk 62 (143)
T PTZ00096 19 GVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRK 62 (143)
T ss_pred cCCHHHHHcCCHHHHHHHcCcccccccccCCCHHHHHHHHHHHH
Confidence 367899999999999988742 3599999999999986
No 72
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.19 E-value=22 Score=33.80 Aligned_cols=85 Identities=16% Similarity=0.314 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh---ccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLSLIRDIRRR---GKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~lIRdIRRR---gKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
..++..|..+..=+++++-+|..=+. +++++.|| ||.=..+ ...|..++..|+.++.+|+.|...+.....+|-.
T Consensus 53 ~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq-~rqlEkE-~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 53 KSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQ-ARQLEKE-QQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 45577777777778888887766553 24555555 4433332 2566667777777777777777666666666655
Q ss_pred HHHHHHHHHh
Q psy14684 274 QFSQLYKHVF 283 (357)
Q Consensus 274 kl~~L~q~Vf 283 (357)
+-..|...||
T Consensus 131 ~~~~Lq~Ql~ 140 (193)
T PF14662_consen 131 EKATLQRQLC 140 (193)
T ss_pred hhHHHHHHHH
Confidence 5555555554
No 73
>PLN02678 seryl-tRNA synthetase
Probab=77.91 E-value=13 Score=38.83 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
..|..+...|..|+..|..+++++++++..+.
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555444433
No 74
>PRK11546 zraP zinc resistance protein; Provisional
Probab=77.87 E-value=26 Score=31.74 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHh
Q psy14684 207 DLSETQLSLIRDIRRR 222 (357)
Q Consensus 207 ~LSeeQl~lIRdIRRR 222 (357)
.||+||.+.+..|+..
T Consensus 43 ~LT~EQQa~~q~I~~~ 58 (143)
T PRK11546 43 PLTTEQQAAWQKIHND 58 (143)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3999999999888743
No 75
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=77.67 E-value=22 Score=35.72 Aligned_cols=81 Identities=7% Similarity=0.238 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhccchHHHHhhhh-hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy14684 210 ETQLSLIRDIRRRGKNKVAAQNCRK-RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRD 288 (357)
Q Consensus 210 eeQl~lIRdIRRRgKNRvAAQnCRK-RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD 288 (357)
.+.+..++..|.-..+.+.+-.-.. -+-....+|-+.+..|+.++..+..++.+|...++++-.++..|++.+-.....
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444444433322 233456777778888889999999999999999999999999998877655444
Q ss_pred CC
Q psy14684 289 SD 290 (357)
Q Consensus 289 ~~ 290 (357)
.+
T Consensus 99 ~~ 100 (294)
T COG1340 99 RN 100 (294)
T ss_pred hh
Confidence 33
No 76
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.62 E-value=24 Score=32.74 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhc
Q psy14684 199 FNERLSKYDLSETQLSLIRDIRRRG 223 (357)
Q Consensus 199 FNelLs~~~LSeeQl~lIRdIRRRg 223 (357)
.|..+++ =-++++++-|+.|+..
T Consensus 51 WNs~VRk--qY~~~i~~AKkqRk~~ 73 (161)
T TIGR02894 51 WNAYVRK--QYEEAIELAKKQRKEL 73 (161)
T ss_pred HHHHHHH--HHHHHHHHHHHHHhcc
Confidence 3555555 2356666667777543
No 77
>PRK00846 hypothetical protein; Provisional
Probab=77.34 E-value=25 Score=28.80 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
++|.+||..+.-...-.+.|...+....+.++.|+.++..|...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777766677777777767777777777776655543
No 78
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=76.64 E-value=29 Score=28.76 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=38.3
Q ss_pred HHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 216 IRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 216 IRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
+.+|.+...+--.|-.-|.-+.+...+|+.++..|...+.+|-.|..........|+.
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 4445555555555555555666666888888888888888888777666666554443
No 79
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.59 E-value=8.8 Score=41.94 Aligned_cols=22 Identities=23% Similarity=0.518 Sum_probs=10.9
Q ss_pred hhhhcchHHHHH--HHcCCCCChh
Q psy14684 168 EEEQMTRDEKKA--RALNIPIPVN 189 (357)
Q Consensus 168 ~~~~~SRDE~RA--~al~IPFSvd 189 (357)
.++.||=||++. +.+++-.+++
T Consensus 318 P~~dLsveEK~~~~r~~~~~~~dd 341 (652)
T COG2433 318 PDRDLSVEEKQEALRTLKISVSDD 341 (652)
T ss_pred CcccCCHHHHHHHHhhcCCCCCCc
Confidence 344556666655 4444444443
No 80
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=76.49 E-value=4.5 Score=41.49 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
+|...|++||++|++|++.|+.++.+|+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555543
No 81
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=76.44 E-value=2.2 Score=39.32 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=13.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+++..-||.|| .|+|.|+-|.++|+.|+..||+.+
T Consensus 13 IERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 13 IERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777 556666666666666666666665
No 82
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.11 E-value=15 Score=40.70 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
.+.|..||.++..+..-...-...+.....++..+.+.|..||.+||.-
T Consensus 418 qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~c 466 (717)
T PF09730_consen 418 QERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMC 466 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566677777777766666666667777888888899999999999954
No 83
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=76.06 E-value=15 Score=40.84 Aligned_cols=116 Identities=14% Similarity=0.205 Sum_probs=60.5
Q ss_pred hhHhcC---CHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH----
Q psy14684 189 NDIINL---PMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEH---- 261 (357)
Q Consensus 189 deIVnL---PV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr---- 261 (357)
|+||.+ +-+--..|+..+.||+.|.+.|=++|=|. -.|++ +..|+.|.++|..+...|+.=+
T Consensus 383 DevI~iIR~s~~~k~~L~~~f~ls~~QaeaIL~mrL~~----------L~~le-~~~i~~E~~~l~~e~~~l~~~L~~~~ 451 (735)
T TIGR01062 383 DEVIEIIREEDEPKTILMERFKLSAIQAEAILNLRLRH----------LAKLE-EHAIIDEQSELEKERAILEKILKSER 451 (735)
T ss_pred HHHHHHHHcChhhHHHHHHhcCCCHHHHHHHHHhHHHH----------hhhhH-HHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 454443 33457788999999999999997776211 11222 2345555666666655555322
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhhccC----CCCCCCCCcccceeecCCCcEEEEecC
Q psy14684 262 ---EYLSQECSRVKSQFSQLYKHVFNALRD----SDGNPYSPFEFSLEQTNDGNVELVRRQ 315 (357)
Q Consensus 262 ---~~L~~e~~~LKqkl~~L~q~Vf~~LrD----~~G~P~SP~ey~Lq~~~dG~V~lVPr~ 315 (357)
..+..|+.+++++|..--+..+..-.+ .+-..+.-+.+.+-.|.+|-|--++..
T Consensus 452 ~~~~~i~~el~~~~~~~g~~RRt~i~~~~~~~~~~~~~~i~~e~v~VilTk~G~IKr~~~~ 512 (735)
T TIGR01062 452 ELNQLVKKEIQADATKYGLARRSSLEEREEAKQVSEIDMIPKEPVTIILSKMGWVRSAKGH 512 (735)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeeeeccccccccchhhcccCcceEEEEecCCEEEecccc
Confidence 334445555555554211111100000 001123455566777778877666654
No 84
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.85 E-value=32 Score=29.88 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
-..+..|+..+..|+.+.+.+.+|+..+......+..++.
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555444444444444444443
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.09 E-value=10 Score=41.68 Aligned_cols=8 Identities=38% Similarity=1.061 Sum_probs=5.0
Q ss_pred HhhhhhHH
Q psy14684 230 QNCRKRKL 237 (357)
Q Consensus 230 QnCRKRKL 237 (357)
.-||.|+.
T Consensus 541 e~~r~r~~ 548 (697)
T PF09726_consen 541 ESCRQRRR 548 (697)
T ss_pred HHHHHHHH
Confidence 34887753
No 86
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.05 E-value=19 Score=36.44 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=47.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPY 294 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~ 294 (357)
.-+.++..+.....+|+.+...+.-|.+++..|++.++.++..|-++..-.|..++.+.+
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv 189 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIV 189 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 334455555577888888888888999999999999999999999998877877665443
No 87
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.89 E-value=21 Score=28.52 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
..|+.+|..|..+...+..++..|.++.+..-
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555544333
No 88
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=74.88 E-value=8.2 Score=40.86 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcc------chHHHHhhhhhHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLIRDIRRRGK------NKVAAQNCRKRKLDQILSLADEVKQ-MKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lIRdIRRRgK------NRvAAQnCRKRKLd~I~~LEdEV~~-Lk~EkekL~kEr~~L~~e~ 268 (357)
-|-+++=|+. =+..+|++|++.- .++.++|-|-|+.+. .+...|.+ |..++.+|.+|+++|..++
T Consensus 54 gDTP~DTlrT------lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~--~id~~i~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 54 GDTPADTLRT------LVAEVKELRKRLAKLISENEALKAENERLQKREQ--SIDQQIQQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred CCCccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3456666664 2455666776543 223344444333222 22233332 5566677777888888888
Q ss_pred HHHHHHHHHHHHHH
Q psy14684 269 SRVKSQFSQLYKHV 282 (357)
Q Consensus 269 ~~LKqkl~~L~q~V 282 (357)
.+++..+..|.+.+
T Consensus 126 ~~~~~~l~~l~~~l 139 (472)
T TIGR03752 126 QQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876654
No 89
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=74.34 E-value=43 Score=30.65 Aligned_cols=29 Identities=17% Similarity=0.420 Sum_probs=23.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhccchHHH
Q psy14684 201 ERLSKYDLSETQLSLIRDIRRRGKNKVAA 229 (357)
Q Consensus 201 elLs~~~LSeeQl~lIRdIRRRgKNRvAA 229 (357)
.+++..+||++|.+-||.||.-.+..+-+
T Consensus 46 ~m~~~L~LTdeQk~qik~i~~~~r~~~k~ 74 (170)
T PRK12750 46 GIMRQLDLTDAQKEQLKEMREANRAEMKA 74 (170)
T ss_pred hhHhhCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46778889999999999999766654444
No 90
>KOG4005|consensus
Probab=74.27 E-value=11 Score=37.30 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLM-------QEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~-------kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.|.+|++|-..|+.|++.|. .++.+|..++..+++.|..|.
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 56666666666555555555 444445555555555554443
No 91
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=73.81 E-value=42 Score=33.37 Aligned_cols=35 Identities=11% Similarity=0.345 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.|++.+..+..+..+|..++...+.+++.+|..|.
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555566666655554
No 92
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=73.60 E-value=16 Score=28.52 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhccchHHHH
Q psy14684 200 NERLSKYDLSETQLSLIRDIRRRGKNKVAAQ 230 (357)
Q Consensus 200 NelLs~~~LSeeQl~lIRdIRRRgKNRvAAQ 230 (357)
..+.....||++|...|+.|+..-+...-..
T Consensus 7 ~~l~~~L~LT~eQ~~~~~~i~~~~~~~~~~~ 37 (100)
T PF07813_consen 7 DRLKEELNLTDEQKAKWRAIRQAMKAKMKPL 37 (100)
T ss_dssp -STTTTS--THHHHHHHHHHHHHHCTTS---
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677899999999999998665444443
No 93
>KOG0898|consensus
Probab=73.54 E-value=3.8 Score=37.26 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=27.1
Q ss_pred CCChhhHhcCCHHHH---------HHHHhcCCCCHHHHHHHHHHHH
Q psy14684 185 PIPVNDIINLPMDEF---------NERLSKYDLSETQLSLIRDIRR 221 (357)
Q Consensus 185 PFSvdeIVnLPV~EF---------NelLs~~~LSeeQl~lIRdIRR 221 (357)
-+.+|+|..||.++| .++.++ |+.-+.++||.+|+
T Consensus 26 GVdld~Lldms~~~~~~l~~ar~rrR~~RG--L~~k~~~liKklrk 69 (152)
T KOG0898|consen 26 GVDLDQLLDMSTEQLVKLFPARQRRRLNRG--LTRKPHSLIKKLRK 69 (152)
T ss_pred CCCHHHHhcCCHHHHHHHHHHHHHHHHHcc--cccchHHHHHHHHH
Confidence 467899999999999 444444 88888888887773
No 94
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.52 E-value=27 Score=27.23 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.|..|..+|..|..+..+|..++..|+.++...++.-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777666666655543
No 95
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.49 E-value=8.4 Score=34.22 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=5.9
Q ss_pred hccCCCCCCCCCcc
Q psy14684 285 ALRDSDGNPYSPFE 298 (357)
Q Consensus 285 ~LrD~~G~P~SP~e 298 (357)
.|++ .+.+++|++
T Consensus 134 ~l~~-~~~~vs~ee 146 (169)
T PF07106_consen 134 KLRS-GSKPVSPEE 146 (169)
T ss_pred HHHh-CCCCCCHHH
Confidence 3444 344455543
No 96
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.22 E-value=64 Score=29.96 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+..+.+.+......+...+..-+.++-..-..||
T Consensus 124 ~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~if 157 (302)
T PF10186_consen 124 LQNELEERKQRLSQLQSQLARRRRQLIQELSEIF 157 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444444444444555
No 97
>smart00338 BRLZ basic region leucin zipper.
Probab=72.83 E-value=17 Score=27.53 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
..+..|..+.+.|..++..|..++..|+..+..|-.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777666666553
No 98
>PRK11677 hypothetical protein; Provisional
Probab=72.81 E-value=18 Score=32.34 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
+.....||.++++.+.+.++-++|+..=-.+-.+|-.+|..=|+.|+++|
T Consensus 28 ~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~Hl 77 (134)
T PRK11677 28 LRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHM 77 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888888888886644444444444444444444443
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.61 E-value=47 Score=29.94 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
..+-.+..+|..+...|..|+..|.++++.++.++..|-...
T Consensus 62 ~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 62 EELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444555555555555666666666666666555443
No 100
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=72.42 E-value=23 Score=30.73 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=33.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
......|+.++++.+.+.++-+.|+..=-..-.+|-.+|..=|+.|+++|.
T Consensus 24 ~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla 74 (128)
T PF06295_consen 24 QQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLA 74 (128)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888999999999988888877444444444444444555555444
No 101
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=72.35 E-value=21 Score=33.25 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=53.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhccchHH-HHh-----------------hhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14684 198 EFNERLSKYDLSETQLSLIRDIRRRGKNKVA-AQN-----------------CRKRKLDQILSLADEVKQMKDKKRHLMQ 259 (357)
Q Consensus 198 EFNelLs~~~LSeeQl~lIRdIRRRgKNRvA-AQn-----------------CRKRKLd~I~~LEdEV~~Lk~EkekL~k 259 (357)
-.|..+++ -.++++.++|+.|+..| |.. .+- --.=-++.| |.+++..|+.+++.|..
T Consensus 51 RwNs~vrk--~Yee~I~~AKK~Rke~k-r~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v--~~~e~~kl~~~~e~L~~ 125 (170)
T PRK13923 51 RWNSVVRK--QYQEQIKLAKKERKELR-RQLGFSPSNLPDNVKTGDEIITSGISDLTLEDV--LSEQIGKLQEEEEKLSW 125 (170)
T ss_pred HHHHHHHH--HHHHHHHHHHHhhHHHh-hccccCCCccccccccccccccCCcccCCHHHH--HHHHHHHHHHHHHHHHH
Confidence 34777887 78899999999887554 211 100 000012222 56677888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14684 260 EHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 260 Er~~L~~e~~~LKqkl~~L~q~ 281 (357)
|...|..+...+...+..|..-
T Consensus 126 e~~~L~~~~~~~~eDy~~Li~I 147 (170)
T PRK13923 126 ENQTLKQELAITEEDYRALIVI 147 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877753
No 102
>PRK00295 hypothetical protein; Provisional
Probab=72.32 E-value=23 Score=27.92 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=32.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
++.-+|+-|+.|-...-+..+++..|.+++..|.+++..+-
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567777778888888888888888888999999888765
No 103
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=72.22 E-value=37 Score=31.33 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy14684 265 SQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 265 ~~e~~~LKqkl~~L~q~Vf 283 (357)
++|+++|..+|..|-+.|-
T Consensus 124 r~e~ee~~~~l~~le~~~~ 142 (175)
T PRK13182 124 RREMEEMLERLQKLEARLK 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666665554
No 104
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.21 E-value=26 Score=30.52 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
..|+..++..+.-.+.|.+++..|...+..|+++
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q 52 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ 52 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333
No 105
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.06 E-value=20 Score=36.92 Aligned_cols=84 Identities=14% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhH-H---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDL--SETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSL-A---DEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 196 V~EFNelLs~~~L--SeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~L-E---dEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
.+.+.+.|++-.+ .=+++..+-..||....++-.-+.++.++..-... . .+.+.|..+...|.+++..|..++.
T Consensus 11 ~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 90 (425)
T PRK05431 11 PEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELD 90 (425)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555544 23444445555555544444444443333321111 1 1233455555555555555555555
Q ss_pred HHHHHHHHHH
Q psy14684 270 RVKSQFSQLY 279 (357)
Q Consensus 270 ~LKqkl~~L~ 279 (357)
++.+++..+.
T Consensus 91 ~~~~~~~~~~ 100 (425)
T PRK05431 91 ELEAELEELL 100 (425)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.33 E-value=14 Score=35.60 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.+.+|+.+++.|+.|..+|.-.++++.-++++|+++-..||.++=++++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467778888888888888888888888888888888888888877665
No 107
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=71.31 E-value=17 Score=31.05 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
..|+.++.+++.++++|..++..|.+++..|++.
T Consensus 53 ~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 53 LQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444555566667777777777777777766666
No 108
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=71.08 E-value=41 Score=36.45 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
|+.+.+.+....+.|..|+..|..+..+++.++..|-.
T Consensus 190 L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe 227 (546)
T PF07888_consen 190 LKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444554555544444444444443
No 109
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.95 E-value=21 Score=35.40 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=23.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEY-------LSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFE 298 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~-------L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP~e 298 (357)
.+.|..||.+...|..+-++..++... +..+++.++.++..+..++- +|+. -|.++-.+
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~-~L~k--tNv~n~~F 142 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD-RLRK--TNVYNDTF 142 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHT----TTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh--cCchhcee
Confidence 334444444444444433333333333 33444444444443333332 4442 24555543
No 110
>KOG4657|consensus
Probab=70.94 E-value=37 Score=33.29 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=32.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+|-+....+|+++..++.+.+.|.+-++.|..|++.++.-++
T Consensus 82 ~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 82 TEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4556677778888888888888888888888777776665543
No 111
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.92 E-value=29 Score=34.70 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
|.+.+||+.+..|+.+..+..++...++...+.|+.++..|...|-
T Consensus 119 d~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 119 DKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666655555555555555555555555554444
No 112
>KOG0996|consensus
Probab=70.89 E-value=27 Score=40.91 Aligned_cols=87 Identities=26% Similarity=0.356 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhccchH--------HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLSLIRDIRRRGKNKV--------AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~lIRdIRRRgKNRv--------AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~ 268 (357)
.++|+.-...++.+.|+..+...--.+.+++ +++.--+++.+.+..|+.++..++.+.....++...+..+.
T Consensus 493 ~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~ 572 (1293)
T KOG0996|consen 493 KQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEE 572 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHH
Confidence 4577777778888888887765544554443 44555566667777777777777777776666666666666
Q ss_pred HHHHHHHHHHHHHHh
Q psy14684 269 SRVKSQFSQLYKHVF 283 (357)
Q Consensus 269 ~~LKqkl~~L~q~Vf 283 (357)
..|+.++..|.+.|-
T Consensus 573 ~~~~~~~~~~rqrve 587 (1293)
T KOG0996|consen 573 RNLKSQLNKLRQRVE 587 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 655555544444443
No 113
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=70.86 E-value=14 Score=30.52 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.-+.+..|++.++.|..+.++|.++...+..++..++..+..++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456777777788888888888888888888888888877664
No 114
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=70.15 E-value=41 Score=27.75 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=37.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
=+.+|..|++.+..|-.+.+..+.|...|..+.+-|.+=+..|...
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557888888888888888888888888888888888888888654
No 115
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.13 E-value=22 Score=29.50 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=29.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
..|..++..++..++.|..|+.+|+.+.....++|..|-.
T Consensus 35 ~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 35 NSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777888888888888888888877754
No 116
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.07 E-value=18 Score=30.59 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=35.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRD 288 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD 288 (357)
..++..++.++..|+.+++.|..|+..|+...+ -++++-+.-+..+++
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~d----yiEe~AR~~Lg~vk~ 80 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQE----AIEERARNELGMVKP 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH----HHHHHHHHHcCCCCC
Confidence 457888999999999999999999999987543 333344444445553
No 117
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.06 E-value=13 Score=39.42 Aligned_cols=42 Identities=7% Similarity=0.132 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
.+||.+++.|+.|.+.|.+.+..+...+++|...+..|...+
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444444444444444444444443
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=70.01 E-value=11 Score=37.83 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=48.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSD 290 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~ 290 (357)
+..++..|+..++.|..||..|..|...|..+...+.++-..|..+++..|.+.+
T Consensus 158 ~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An 212 (306)
T PF04849_consen 158 KCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEAN 212 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcc
Confidence 3467899999999999999999999999999999999999999999888887654
No 119
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=70.01 E-value=1e+02 Score=29.44 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=10.0
Q ss_pred CChhhHhcCCHHHHHHHHhc
Q psy14684 186 IPVNDIINLPMDEFNERLSK 205 (357)
Q Consensus 186 FSvdeIVnLPV~EFNelLs~ 205 (357)
+|++|+...+-+|+-+.|++
T Consensus 8 ~sDeell~~skeel~~rLR~ 27 (195)
T PF10226_consen 8 VSDEELLRWSKEELVRRLRR 27 (195)
T ss_pred CCHHHHHhcCHHHHHHHHHH
Confidence 44555555555555555444
No 120
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=69.83 E-value=30 Score=34.38 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Q psy14684 209 SETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKR 255 (357)
Q Consensus 209 SeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~Eke 255 (357)
.|+.|.-+|+.|++..++++.-.-+.-.-..|..||.|+..+..+..
T Consensus 136 ~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~l 182 (271)
T PF13805_consen 136 REESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENL 182 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh
Confidence 45566666666666666665443333333366777777754444433
No 121
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.76 E-value=15 Score=39.06 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
++..|+.|+..|.++++.+..++.+|..++..|+.+++.+-.
T Consensus 84 qLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 84 QYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344556777777788888888888999999999988876543
No 122
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.73 E-value=22 Score=29.33 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
..|..|+..++..++.|.+|+.+|+.+-....+++..|..
T Consensus 35 n~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 35 NSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777777777777777776653
No 123
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=69.64 E-value=18 Score=29.78 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=32.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+.+.-|+..++.|....++|..+...+..++..+...++++++
T Consensus 77 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 77 EAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566667777777788888888888888888888887775
No 124
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.18 E-value=73 Score=29.81 Aligned_cols=81 Identities=16% Similarity=0.323 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHH-HHHHhHHHHHHHHHH--------HHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKL-DQILSLADEVKQMKD--------KKRHLMQEHEYLSQ 266 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKL-d~I~~LEdEV~~Lk~--------EkekL~kEr~~L~~ 266 (357)
-.+|-.+|.+ -.+++--+|..=|+.+++.-+-.=+-|+. +.|..+++++..|+. ++++|..++..+..
T Consensus 56 e~~Lpqll~~---h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~ 132 (194)
T PF15619_consen 56 EAELPQLLQR---HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQ 132 (194)
T ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 3455556665 34555555554445444444433333333 355666666666554 34444444444444
Q ss_pred HHHHHHHHHHHHH
Q psy14684 267 ECSRVKSQFSQLY 279 (357)
Q Consensus 267 e~~~LKqkl~~L~ 279 (357)
.+..-..++..|-
T Consensus 133 ~l~~~~~ki~~Le 145 (194)
T PF15619_consen 133 KLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 125
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=69.01 E-value=16 Score=28.67 Aligned_cols=43 Identities=9% Similarity=0.216 Sum_probs=28.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
++.-+|+-|+.|....-+..+++..|.+.+..|.+++..+-..
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556677777777777777888888888888888888877633
No 126
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.97 E-value=23 Score=36.32 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=44.1
Q ss_pred CHHHHHHHHhcCCCC----HHHHHHHHHHHHhccchHHHHhhhhhHHHH-HHh----HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 195 PMDEFNERLSKYDLS----ETQLSLIRDIRRRGKNKVAAQNCRKRKLDQ-ILS----LADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 195 PV~EFNelLs~~~LS----eeQl~lIRdIRRRgKNRvAAQnCRKRKLd~-I~~----LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
-.+.+.+.|++-.+. -+++..+-..||....++-+-+.++.++.. |.. .+++...|+.+...|..++..|.
T Consensus 10 n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 10 NPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89 (418)
T ss_pred CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 355666666665542 244555555555555555444444433332 111 11114455555666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q psy14684 266 QECSRVKSQFSQLYK 280 (357)
Q Consensus 266 ~e~~~LKqkl~~L~q 280 (357)
.++.++.+++..+..
T Consensus 90 ~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 90 AALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655543
No 127
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.89 E-value=15 Score=27.90 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~ 268 (357)
..+..|+.++..|+.++++|..|+..|....
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~ 54 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDP 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4556666666666666666666666664433
No 128
>PRK09039 hypothetical protein; Validated
Probab=68.77 E-value=40 Score=33.84 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCCCC
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVK----SQFSQLYKHVFNALRDSDG 291 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK----qkl~~L~q~Vf~~LrD~~G 291 (357)
+..||.++..++.+.......+..|..+++.+. +.|..+..++|..|++-.|
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~ 208 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILG 208 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 444555555555555555555555555555553 2356666678777774444
No 129
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.70 E-value=26 Score=29.60 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQM--KDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 237 Ld~I~~LEdEV~~L--k~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
-.++..||.+++.| +.+..+|..++.++.-+++.|..++..+-+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44667788888888 778888888888888888888888776643
No 130
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=68.68 E-value=25 Score=29.13 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=32.2
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.-+-+.+..|++.++.+..+..+|..+...+..++.+++.++..|
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777777777777655
No 131
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=68.64 E-value=56 Score=31.02 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=49.5
Q ss_pred hhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHH
Q psy14684 170 EQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQ 249 (357)
Q Consensus 170 ~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~ 249 (357)
..|=||...+.. .+..+.|..-|+.+|-.++.. =|..=+|..+=++|.--|-||+ |.+||+|...
T Consensus 60 ~ALqRD~~~~~~---~~~~~~v~~~pl~~Le~l~~~----------qk~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrk 124 (192)
T PF09727_consen 60 LALQRDSEAAGG---EKEEEDVYENPLAELEKLMEH----------QKKMQRRMLEQLAAAEKRHRRT--IQELEEEKRK 124 (192)
T ss_pred HHHHhHHHhcCC---CCccCcchhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 456688766543 344567788889998888776 2333345556666666666665 6666654322
Q ss_pred --------------HHHHHHHHHHHHHHHH
Q psy14684 250 --------------MKDKKRHLMQEHEYLS 265 (357)
Q Consensus 250 --------------Lk~EkekL~kEr~~L~ 265 (357)
|..++++|++++..=.
T Consensus 125 h~~~~aqgDD~t~lLEkEReRLkq~lE~Ek 154 (192)
T PF09727_consen 125 HAEDMAQGDDFTNLLEKERERLKQQLEQEK 154 (192)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 6667777665554433
No 132
>PHA02562 46 endonuclease subunit; Provisional
Probab=68.32 E-value=33 Score=35.12 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
..|+.++..|..+...+..++.+|..+++++...
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 3444444444444443434444444444444333
No 133
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=68.17 E-value=21 Score=30.43 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=14.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
.+..|++++..+..+.++|..+...+..++..|+
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 134
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=68.02 E-value=47 Score=32.69 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=29.0
Q ss_pred HHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHH
Q psy14684 176 EKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDI 219 (357)
Q Consensus 176 E~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdI 219 (357)
-.+..+++|||.- |.|=|-||++ |++++..||+.
T Consensus 93 ~~~L~~~gip~~R------P~DYfAEMvK----SD~HM~KVr~k 126 (271)
T PF05890_consen 93 RPRLKKLGIPFKR------PDDYFAEMVK----SDEHMEKVRQK 126 (271)
T ss_pred HHHHHHcCCCccC------CCcchHHHhc----CHHHHHHHHHH
Confidence 3678899999985 9999999999 89999988653
No 135
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.78 E-value=38 Score=30.95 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=14.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.|..|+.++..+..-++.|.-|...|.-+...+.+++
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333333333
No 136
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=67.77 E-value=51 Score=32.90 Aligned_cols=83 Identities=20% Similarity=0.413 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Q psy14684 208 LSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ----------FSQ 277 (357)
Q Consensus 208 LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk----------l~~ 277 (357)
+=++||+.||.-. . +-..-|.-.+.....||..=..+..|+++..++..........+.+| |..
T Consensus 150 ~EEeEL~~lr~~q---~---~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~q~~~~~~~~~~~~~Ki~Ar~~a~~yl~~ 223 (291)
T PF06098_consen 150 MEEEELAALRRQQ---R---AFEELRNAELAEVQRLEEAEKRRREEKERRIKQQKERLEKEKELREKIAARAFAQQYLSD 223 (291)
T ss_pred HHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777764332 2 23333444566666677766777777777776666655555555554 577
Q ss_pred HHHHHhhhccCCCCCCCCCc
Q psy14684 278 LYKHVFNALRDSDGNPYSPF 297 (357)
Q Consensus 278 L~q~Vf~~LrD~~G~P~SP~ 297 (357)
|...||..|.+ .|--++|-
T Consensus 224 l~~~v~~~L~~-~G~f~dpv 242 (291)
T PF06098_consen 224 LVPSVLDSLED-SGYFYDPV 242 (291)
T ss_pred HHHHHHHHHHH-CCCCCChH
Confidence 88899999985 55555553
No 137
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.22 E-value=28 Score=34.42 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=49.3
Q ss_pred cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 224 KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 224 KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
+++--+|+==.+...+|.++..+++.++.+..++..|+..|..++..+++++...-.-+-.++|
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777888888888888888888888888888888888888888664433334555
No 138
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.74 E-value=24 Score=29.50 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=35.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+-+-+.+.+|++.++.+......|.+....|...+.++..+|..++
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677778888888888888787777888888888888777665
No 139
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=66.57 E-value=12 Score=29.94 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=23.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
-+.+..|+.+++.+..+.++|..+...+..++.+++..|.
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666555544
No 140
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.56 E-value=47 Score=36.93 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=18.6
Q ss_pred HHHHHcCCCCCh----hhHhcCCHHHHHHHHhcCCCCHHHH
Q psy14684 177 KKARALNIPIPV----NDIINLPMDEFNERLSKYDLSETQL 213 (357)
Q Consensus 177 ~RA~al~IPFSv----deIVnLPV~EFNelLs~~~LSeeQl 213 (357)
.-|+.++||-.+ .+|..---.+|+++|.+ |.++..
T Consensus 487 ~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~--L~~~~~ 525 (771)
T TIGR01069 487 EIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEK--LSALEK 525 (771)
T ss_pred HHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHH
Confidence 445555665543 22333334577888877 554433
No 141
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=66.39 E-value=30 Score=29.40 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=29.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.-|...+..|..+...+..++.++...+.+..+++..|.++
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777777777777777777777777654
No 142
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=66.21 E-value=18 Score=35.62 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=40.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
-+..|++++..|+.++++|..|++.+.++++...+=+..+...+.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv 77 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLV 77 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999998888888887766
No 143
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=66.21 E-value=29 Score=29.82 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
-+.+..|+..++.|....++|..+...+..+++++.+.+..|..+
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777788888878888888888888888777777643
No 144
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.12 E-value=47 Score=35.05 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=33.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.++++.+.+.+.+++.|+.+.+++..+...+..++...|.+.
T Consensus 335 ~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 335 KEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888899999999988888888877776654
No 145
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.10 E-value=42 Score=26.81 Aligned_cols=40 Identities=10% Similarity=0.251 Sum_probs=32.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
-..|..|-..|+++...+..|+..|...+...+.+++.+-
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888888888888888765
No 146
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=65.89 E-value=18 Score=34.39 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=16.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHE---YLSQECSRVKS 273 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~---~L~~e~~~LKq 273 (357)
.+.+|..|.+.|++|+..|+.+.. +++.|.++|++
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554444 33444444444
No 147
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=65.66 E-value=16 Score=34.45 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=44.1
Q ss_pred HhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q psy14684 241 LSLADEVKQ--MKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYS 295 (357)
Q Consensus 241 ~~LEdEV~~--Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~S 295 (357)
..||+++-. ++.|+-.|..++.+|.++..+++.+|..|-..+.+.|...+|+-+.
T Consensus 153 ~gLe~qll~~vv~~e~PeLe~~r~~L~~~~~~~k~~L~~lEd~lL~~Ls~s~g~iLe 209 (228)
T PF12781_consen 153 EGLEDQLLSIVVKHERPELEEQRNELLKEIAENKIQLKELEDQLLELLSNSEGNILE 209 (228)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCTSSCCCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccC
Confidence 344444433 5667778888889999999999999999999999999999998653
No 148
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=65.43 E-value=67 Score=32.82 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 256 HLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 256 kL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.+..++..+..++..++.++..+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443
No 149
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.18 E-value=63 Score=33.24 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=33.7
Q ss_pred hccchHHHHhhhhh-HHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 222 RGKNKVAAQNCRKR-KLDQ-ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 222 RgKNRvAAQnCRKR-KLd~-I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
..+|+++.+--.++ +.+. ...|-.+++.|+.+...|..+...+..++.++-..+-.+
T Consensus 51 ~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 51 AKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33555555443321 1122 556666777777777777777777777776666665433
No 150
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=65.08 E-value=14 Score=30.46 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+|..|+.+|++|+..|.+++++++..+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566677777777777777776666654
No 151
>PLN02320 seryl-tRNA synthetase
Probab=65.07 E-value=32 Score=36.72 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=45.3
Q ss_pred CCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14684 183 NIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHE 262 (357)
Q Consensus 183 ~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~ 262 (357)
++.+++|+|+.+-- ++..+ ..|++.+|.. +|+++.+--.+++- .+...|..+...|..++.
T Consensus 87 ~~~~~vd~l~~ld~-~~r~~-------~~~~~~lr~e----rn~~sk~i~~~~~~-------~~~~~l~~~~k~lk~~i~ 147 (502)
T PLN02320 87 NSNANLELVLELYE-NMLAL-------QKEVERLRAE----RNAVANKMKGKLEP-------SERQALVEEGKNLKEGLV 147 (502)
T ss_pred CCCcCHHHHHHHHH-HHHHH-------HHHHHHHHHH----HHHHHHHHHhhhCC-------CCHHHHHHHHHHHHHHHH
Confidence 34445677765521 12222 3345555444 45555554322221 234556666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14684 263 YLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 263 ~L~~e~~~LKqkl~~L~q~V 282 (357)
.|..++.++.+++..+...|
T Consensus 148 ~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 148 TLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 88888888888887766443
No 152
>KOG2391|consensus
Probab=64.85 E-value=26 Score=36.11 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 227 VAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 227 vAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
.|=|..=||.-|.| -.-...|+.+++.|+++...|.+.++-|+.+.++
T Consensus 231 ~aeq~slkRt~EeL---~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 231 QAEQESLKRTEEEL---NIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHhhHHHH---HhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444443332 2333445666666666666666666666666654
No 153
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=64.81 E-value=15 Score=36.19 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=32.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
|..|+.++++|+.+...+..|...+.+++..+++++..+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345667788888888888888888888888888888766543
No 154
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=64.66 E-value=18 Score=29.47 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=35.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSD 290 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~ 290 (357)
+..+.....++..+..+...+..+...+...+..+=+..-...+.++..++...
T Consensus 76 l~~~~~~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~~l~~l~~~~ 129 (143)
T PF05130_consen 76 LSELIEEREELQALWRELRELLEELQELNERNQQLLEQALEFVQQLLNLLQPAR 129 (143)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH--
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333556677777777777777777777777777766666777777666443
No 155
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.61 E-value=37 Score=33.56 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
..||.+++.++.+..+|..|+.+|...++.+-
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34445555555555555555555544444333
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.51 E-value=26 Score=30.71 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLM---QEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~---kEr~~L~~e~~~LKqkl~~L 278 (357)
....|..|+..|..+++.+. .+...|..++.+|..++..+
T Consensus 45 ~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 45 ERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555554443 33445555555555555444
No 157
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=64.46 E-value=45 Score=26.02 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVK--SQFSQLYKH 281 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK--qkl~~L~q~ 281 (357)
.+..++..++.+.++|..|..+|..|+..|. ++++.+.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~ 69 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKK 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3333444444444444444444444444433 334444443
No 158
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=64.20 E-value=55 Score=35.99 Aligned_cols=14 Identities=21% Similarity=0.397 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIR 220 (357)
Q Consensus 207 ~LSeeQl~lIRdIR 220 (357)
.||++|.+.|=++|
T Consensus 384 ~~t~~qa~ail~mr 397 (635)
T PRK09631 384 DVTEEDIENLLKIP 397 (635)
T ss_pred CCCHHHHHHHHHhH
Confidence 69999999887776
No 159
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.19 E-value=30 Score=30.53 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSD 290 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~ 290 (357)
-+++|....|.|..++..|.+....++.+|..|...+...+.+..
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~ 115 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAA 115 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 355577777778888888888888888888888888877777644
No 160
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.14 E-value=1e+02 Score=28.23 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=16.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
..|+..+..+....++|...+..|...+.+++.+..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 161
>PRK03918 chromosome segregation protein; Provisional
Probab=64.12 E-value=57 Score=35.48 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
++.+.+.|..++..+..++..++.++..|...
T Consensus 664 l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 695 (880)
T PRK03918 664 LREEYLELSRELAGLRAELEELEKRREEIKKT 695 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555566666666666666664
No 162
>KOG2483|consensus
Probab=64.11 E-value=15 Score=35.51 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=34.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+|.++.|..|+++........++|.+|...|++++.+|.-..
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 356889999999999999999988888888888887776444
No 163
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=64.06 E-value=20 Score=33.23 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcc
Q psy14684 201 ERLSKYDLSETQLSLIRDIRRRGK 224 (357)
Q Consensus 201 elLs~~~LSeeQl~lIRdIRRRgK 224 (357)
.|+++.+||++|..-||+|++..+
T Consensus 44 ~MF~gLdLTdaQRqQmRdLm~~~r 67 (166)
T PRK10363 44 HMFDGISLTEHQRQQMRDLMQQAR 67 (166)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHH
Confidence 367889999999999999997655
No 164
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=63.81 E-value=35 Score=28.29 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=13.2
Q ss_pred hHhcCCHHHHHHHHhcCCCCH
Q psy14684 190 DIINLPMDEFNERLSKYDLSE 210 (357)
Q Consensus 190 eIVnLPV~EFNelLs~~~LSe 210 (357)
.+...-.+||..++...+|-.
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~ 34 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVE 34 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 344555677777777766544
No 165
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.55 E-value=56 Score=26.78 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=39.8
Q ss_pred CCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14684 183 NIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHE 262 (357)
Q Consensus 183 ~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~ 262 (357)
..+..+|+|+.| -.+...++. +++-+ | ..+|.++.+--..++-- .++..|..+...|..++.
T Consensus 23 ~~~~~vd~i~~l-d~~~r~l~~-------~~e~l---r-~~rN~~sk~I~~~~~~~------~~~~~l~~e~~~lk~~i~ 84 (108)
T PF02403_consen 23 GDEEDVDEIIEL-DQERRELQQ-------ELEEL---R-AERNELSKEIGKLKKAG------EDAEELKAEVKELKEEIK 84 (108)
T ss_dssp CCCHHHHHHHHH-HHHHHHHHH-------HHHHH---H-HHHHHHHHHHHHHCHTT------CCTHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHH-HHHHHHHHH-------HHHHH---H-HHHhHHHHHHHHHhhCc------ccHHHHHHHHHHHHHHHH
Confidence 456667777666 222222222 12222 2 33566665533333321 344555556666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14684 263 YLSQECSRVKSQFSQLY 279 (357)
Q Consensus 263 ~L~~e~~~LKqkl~~L~ 279 (357)
.+..++.++..++..+.
T Consensus 85 ~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 85 ELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665554
No 166
>PRK02119 hypothetical protein; Provisional
Probab=63.45 E-value=35 Score=27.31 Aligned_cols=41 Identities=2% Similarity=0.024 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
++.-+|+-|+.|-...-+..+++..|.+++..|.+++..+-
T Consensus 17 rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 17 KIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666777777777777777788888888888887664
No 167
>PRK02793 phi X174 lysis protein; Provisional
Probab=63.37 E-value=35 Score=27.17 Aligned_cols=41 Identities=5% Similarity=-0.021 Sum_probs=30.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
++.-+|+-|+.|-...-+..+++..|.+++..|.+++..+-
T Consensus 16 ~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 16 RLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566677777777777777777788888888888887765
No 168
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=63.31 E-value=86 Score=36.39 Aligned_cols=86 Identities=14% Similarity=0.252 Sum_probs=62.1
Q ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 195 PMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 195 PV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
-..+++.++....+|+++...+.....+. -.|+.-.......+..++.+...++.+.++...+...+.+++.+++++
T Consensus 450 ~l~~l~~~~~~~~~~~e~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 526 (1201)
T PF12128_consen 450 ELAELKQQLKNPQYTEEEKEQLEQADKRL---EQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQ 526 (1201)
T ss_pred HHHHHHHHHhCcCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888776665443 234554445556677777888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q psy14684 275 FSQLYKHVF 283 (357)
Q Consensus 275 l~~L~q~Vf 283 (357)
+..|...++
T Consensus 527 ~~~l~~~L~ 535 (1201)
T PF12128_consen 527 IAELQRQLD 535 (1201)
T ss_pred HHHHHHhhC
Confidence 887775543
No 169
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.05 E-value=23 Score=37.67 Aligned_cols=99 Identities=18% Similarity=0.311 Sum_probs=60.4
Q ss_pred hcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCC-CCHHHHHHHHHHHH-hccchHHHHhhhhhHHHHH--HhHHHH
Q psy14684 171 QMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYD-LSETQLSLIRDIRR-RGKNKVAAQNCRKRKLDQI--LSLADE 246 (357)
Q Consensus 171 ~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~-LSeeQl~lIRdIRR-RgKNRvAAQnCRKRKLd~I--~~LEdE 246 (357)
.||-||-+ +++| +.+-|.|-+..+..... |..+..+++++-++ +..|. --+-|...+++. ..|+.+
T Consensus 41 ~ltpee~k--alGi------egDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~--~L~~r~~~id~~i~~av~~~ 110 (472)
T TIGR03752 41 ELSPEELK--ALGI------EGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENE--RLQKREQSIDQQIQQAVQSE 110 (472)
T ss_pred cCCcchhH--hcCC------CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHhh
Confidence 45566544 4444 23445666666655533 44455555555544 33343 223444444432 346667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
-.+|..+.++|+.|++++...++.|..+|..+.
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 778889999999999999999999999887654
No 170
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.92 E-value=57 Score=36.33 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=20.4
Q ss_pred HHHHHcCCCCCh----hhHhcCCHHHHHHHHhcCCCCHH
Q psy14684 177 KKARALNIPIPV----NDIINLPMDEFNERLSKYDLSET 211 (357)
Q Consensus 177 ~RA~al~IPFSv----deIVnLPV~EFNelLs~~~LSee 211 (357)
.-|+.++||-.+ .++..---.+|+++|.+ |.++
T Consensus 492 ~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~--l~~~ 528 (782)
T PRK00409 492 EIAKRLGLPENIIEEAKKLIGEDKEKLNELIAS--LEEL 528 (782)
T ss_pred HHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHH--HHHH
Confidence 456666666654 34445556678888887 5543
No 171
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=62.74 E-value=42 Score=32.40 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=25.5
Q ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHH
Q psy14684 195 PMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQ 249 (357)
Q Consensus 195 PV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~ 249 (357)
+++|+...|-- |.-||+-. |++|+-=.+|+-++|..|.+=++.
T Consensus 2 s~EELRq~Ll~---TTlELE~~---------k~~A~EElRk~eeqi~~L~~Ll~~ 44 (214)
T PF07795_consen 2 SMEELRQKLLY---TTLELEAT---------KMEANEELRKREEQIAHLKDLLKK 44 (214)
T ss_pred CHHHHHHHHHH---HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666653 66677654 566666566666666555544443
No 172
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=62.50 E-value=1e+02 Score=27.47 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=12.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~ 258 (357)
+...+.+..++..++.+..+-..|.
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444444444
No 173
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=62.20 E-value=90 Score=26.79 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.+++-++-|....+.|...+..+...+..+++++..+.+.+-
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888899999999988888776554
No 174
>PRK02224 chromosome segregation protein; Provisional
Probab=62.11 E-value=82 Score=34.50 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=3.0
Q ss_pred CCChhhH
Q psy14684 185 PIPVNDI 191 (357)
Q Consensus 185 PFSvdeI 191 (357)
||..+++
T Consensus 460 ~~~~~~~ 466 (880)
T PRK02224 460 PVEGSPH 466 (880)
T ss_pred cCCCcch
Confidence 3444444
No 175
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=61.77 E-value=71 Score=37.69 Aligned_cols=92 Identities=16% Similarity=0.277 Sum_probs=42.2
Q ss_pred CCCChhhHhcCC-----HHHHHHHHhcCCCCHHHHHHHHHHHH------hccchHHHHhhhhhHHHHHHhHHHHHHHHHH
Q psy14684 184 IPIPVNDIINLP-----MDEFNERLSKYDLSETQLSLIRDIRR------RGKNKVAAQNCRKRKLDQILSLADEVKQMKD 252 (357)
Q Consensus 184 IPFSvdeIVnLP-----V~EFNelLs~~~LSeeQl~lIRdIRR------RgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~ 252 (357)
.|.+.++|-.|. ++++++.|.. .++.+..++.|.. +...+..|+.-+..+. .+..+..++..+..
T Consensus 215 ~~l~~~~i~~l~e~~~~~~~~~~~le~---l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 290 (1353)
T TIGR02680 215 PPLDDDELTDVADALEQLDEYRDELER---LEALERALRNFLQRYRRYARTMLRRRATRLRSAQT-QYDQLSRDLGRARD 290 (1353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 355555555552 3444444444 4555566666665 2233344444343332 23444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+.+.+..++..+..++..++.++..|-
T Consensus 291 ~~~~~~~~~~~~~~~~~~le~~~~~l~ 317 (1353)
T TIGR02680 291 ELETAREEERELDARTEALEREADALR 317 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 176
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=61.76 E-value=1.2e+02 Score=27.11 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=29.0
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 228 AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 228 AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
++...-+.....+.+|..++.+++++.+.+..+...+..+...+.+++..+
T Consensus 134 ~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555566666666666666666666666666665555555543
No 177
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.75 E-value=30 Score=34.24 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=17.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+.+++.++++++.+..+|..|+..+...+.+..+.|
T Consensus 67 k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 67 KIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444433333
No 178
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=61.74 E-value=1.1e+02 Score=32.64 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhc-cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLSLIRDIRRRG-KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~lIRdIRRRg-KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+..|.-|.+ +.++.+.++..++-. +|+..||----|-..+-.+|+.++..|..+..+|..+...|..+..+|.--.
T Consensus 105 ~~~~~El~~---~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~ 181 (499)
T COG4372 105 EAARSELQK---ARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASA 181 (499)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 556666676666633 7999999888888888899999999998888888888888877777777555
Q ss_pred HHHHHHHh
Q psy14684 276 SQLYKHVF 283 (357)
Q Consensus 276 ~~L~q~Vf 283 (357)
++|..++.
T Consensus 182 ~Qlk~~~~ 189 (499)
T COG4372 182 TQLKSQVL 189 (499)
T ss_pred HHHHHHHH
Confidence 55544443
No 179
>KOG4571|consensus
Probab=61.68 E-value=44 Score=33.70 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
+..+..||.+-.+|+.+.+.|.+|++.|+.-+-+
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544443
No 180
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=61.64 E-value=50 Score=34.59 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=17.4
Q ss_pred hhHhcCC------HHHHHHHHhcCCCCHHHHHHHHHHH
Q psy14684 189 NDIINLP------MDEFNERLSKYDLSETQLSLIRDIR 220 (357)
Q Consensus 189 deIVnLP------V~EFNelLs~~~LSeeQl~lIRdIR 220 (357)
++|+++. ..+|-+.|....||+.|.+.|=++|
T Consensus 361 d~vi~~ir~s~~ak~~L~~~l~~~~~~~~qa~~IL~m~ 398 (445)
T cd00187 361 DEVINLIRSSDEAKKALIEELEKLGFSEIQADAILDMR 398 (445)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCHHHHHHHHHhH
Confidence 3555555 4455444544467777666664443
No 181
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.59 E-value=62 Score=29.92 Aligned_cols=99 Identities=19% Similarity=0.324 Sum_probs=49.0
Q ss_pred HHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHH-HHHHHHHHHhccchHH----------HHhhhhhHH--HHHHhH
Q psy14684 177 KKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQ-LSLIRDIRRRGKNKVA----------AQNCRKRKL--DQILSL 243 (357)
Q Consensus 177 ~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQ-l~lIRdIRRRgKNRvA----------AQnCRKRKL--d~I~~L 243 (357)
+.|+..+| .++.+-+ =..=|.|+++.-.+.=.+ =.++-.||.+-..=++ |+..|+.-. ....+|
T Consensus 49 ~~ar~~gI-cpvr~~l--y~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l 125 (189)
T PF10211_consen 49 RQARETGI-CPVREEL--YSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQEL 125 (189)
T ss_pred hcCCcccc-cHHHHHH--HHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777 5554432 122466666653332222 2234444544333222 223333211 124566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+.++..|+.+++.|..+...|....+.+..+...+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666655555443
No 182
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=61.41 E-value=22 Score=31.26 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=21.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLM-------QEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~-------kEr~~L~~e~~~LKqkl~ 276 (357)
-|++.+||..+..|-++...|+ .|+..|+-|...||.+|.
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 3566666665555555444444 444445555555555544
No 183
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=61.14 E-value=33 Score=28.71 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
..++.|...++.|..+++.|..++.+|.....+.+.+|.+..
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667888899999999999999999999999998887654
No 184
>PRK09039 hypothetical protein; Validated
Probab=60.87 E-value=97 Score=31.14 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=31.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
+|..|..++..|+.+...|..++..++.+..+.+.++..|-+.+-..+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777766666666666766665555444
No 185
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=60.83 E-value=31 Score=35.82 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRD 288 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD 288 (357)
....++.++..+..+...|..-+++|..++..+.++++++++.+|..|++
T Consensus 331 e~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqa 380 (400)
T COG5613 331 EAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQA 380 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777778888888888889999999999999999998885
No 186
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=60.79 E-value=1.3e+02 Score=33.52 Aligned_cols=117 Identities=19% Similarity=0.313 Sum_probs=59.3
Q ss_pred hhhHhcC-----CHHHHHH-HHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH-
Q psy14684 188 VNDIINL-----PMDEFNE-RLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQE- 260 (357)
Q Consensus 188 vdeIVnL-----PV~EFNe-lLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kE- 260 (357)
.|++|.+ ..++... |...+.||++|.+.|=++|=+ |-.+ ..+..|+.|.++|..+.+.|+.=
T Consensus 382 id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~~~il~m~l~----------~lt~-~e~~kl~~e~~~l~~~i~~l~~iL 450 (738)
T TIGR01061 382 IDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLY----------RLTN-TDIFELKEEQNELEKKIISLEQII 450 (738)
T ss_pred hhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhhHHH----------HHhH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455544 4444544 444468999998888666511 1111 22345555555555555555431
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCCCCCCCcccceeecCCCcEEEEecC
Q psy14684 261 ------HEYLSQECSRVKSQFSQLYKHVFNA----LRDSDGNPYSPFEFSLEQTNDGNVELVRRQ 315 (357)
Q Consensus 261 ------r~~L~~e~~~LKqkl~~L~q~Vf~~----LrD~~G~P~SP~ey~Lq~~~dG~V~lVPr~ 315 (357)
...+..|+.+++.+|..=-+..+.. +.-+.-..+..++|.+-.|.+|-|--+|..
T Consensus 451 ~~~~~~~~~i~~el~~ik~kfg~~RRT~I~~~~~~~~~~~edli~~E~~lV~lTk~G~IKrt~l~ 515 (738)
T TIGR01061 451 ASEKARNKLLKKQLEEYKKQFAQQRRSQIEDFINQIKINESELIENEDYYVLITKAGYIKRTSNR 515 (738)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCceeeecccccccCCHhhcccccceEEEEccCCEEEEeehh
Confidence 1334555555555554211111100 000001123456677888899988888764
No 187
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=60.68 E-value=64 Score=31.47 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=40.8
Q ss_pred CCHHHHHHHHhcCCCCHHHHHHHHHHHHhccc---hHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 194 LPMDEFNERLSKYDLSETQLSLIRDIRRRGKN---KVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 194 LPV~EFNelLs~~~LSeeQl~lIRdIRRRgKN---RvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
.-+.++++.++. .++.+.-+++.|..-.- -..|+.=....-+.+..|.+++..|..+.+.|..++..+..++.+
T Consensus 66 ~ei~~~r~r~~~---~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 66 SEIQEIRERIKR---AEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHH---HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777666 55555666655543221 122333333334456666666666666666555555555444444
Q ss_pred HHHHH
Q psy14684 271 VKSQF 275 (357)
Q Consensus 271 LKqkl 275 (357)
+++.+
T Consensus 143 ~~~~~ 147 (239)
T COG1579 143 AEARL 147 (239)
T ss_pred HHHHH
Confidence 44433
No 188
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.65 E-value=48 Score=32.95 Aligned_cols=65 Identities=11% Similarity=0.213 Sum_probs=46.2
Q ss_pred cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy14684 224 KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDS 289 (357)
Q Consensus 224 KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~ 289 (357)
.+-..|+.-=..+.+.+..|+..+..|+.+.+....|+..|..++.....++.. ...+...|.++
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r-A~~Li~~L~~E 292 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER-AEKLISGLSGE 292 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-HHHHHhhhcch
Confidence 344445555555666778888888888888888888888888888888888764 34455555544
No 189
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=60.28 E-value=1.1e+02 Score=32.50 Aligned_cols=106 Identities=9% Similarity=0.247 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHh-hhh----------hHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQN-CRK----------RKLDQILSLADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQn-CRK----------RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L 264 (357)
..++..+=..|.||+.++..++.+....+.-..... +.. -=.+....|..+++.+..+...+...+..|
T Consensus 330 ~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 330 KEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667899999999988888766554333322 110 011233444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc---CCCCCCCCCccccee
Q psy14684 265 SQECSRVKSQFSQLYKHVFNALR---DSDGNPYSPFEFSLE 302 (357)
Q Consensus 265 ~~e~~~LKqkl~~L~q~Vf~~Lr---D~~G~P~SP~ey~Lq 302 (357)
.....+.++++..+...+ +.++ ...+-|--|..|...
T Consensus 410 rk~E~eAr~kL~~~~~~L-~~ikr~l~k~~lpgip~~y~~~ 449 (569)
T PRK04778 410 RKDELEAREKLERYRNKL-HEIKRYLEKSNLPGLPEDYLEM 449 (569)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCcHHHHHH
Confidence 555544555554433222 1221 123345567666443
No 190
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.21 E-value=1.1e+02 Score=30.38 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=46.7
Q ss_pred CCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHh---------HHHHHHHHHHH
Q psy14684 183 NIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILS---------LADEVKQMKDK 253 (357)
Q Consensus 183 ~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~---------LEdEV~~Lk~E 253 (357)
..|+=.=+|.+| ++.+..+-.. -.+|+.-+..+|+....++..+ ...|...|.. .+.-+..+-.+
T Consensus 114 EYPvK~vqIa~L-~rqlq~lk~~---qqdEldel~e~~~~el~~l~~~--~q~k~~~il~~~~~k~~~~~~~~l~~~~~~ 187 (258)
T PF15397_consen 114 EYPVKAVQIANL-VRQLQQLKDS---QQDELDELNEMRQMELASLSRK--IQEKKEEILSSAAEKTQSPMQPALLQRTLE 187 (258)
T ss_pred hhhHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 455555577777 5555554443 4455555666666555554432 2222222222 23333334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 254 KRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 254 kekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+..+++|....+.++++|+..+..|-.+|-
T Consensus 188 N~~m~kei~~~re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 188 NQVMQKEIVQFREEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555544443
No 191
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=59.80 E-value=25 Score=29.65 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
+|..|+.++..|..+++.|..++..-+.|.+.
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544444444433
No 192
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=59.76 E-value=56 Score=26.52 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLM------------QEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~------------kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+.|..||+|+..|+.+...|. +.+..|..++..|-.+++.-.
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~ 70 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKA 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888883 334445555555555444333
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.63 E-value=26 Score=31.14 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 256 HLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 256 kL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
.|..++.+|..++..|..+|..|..
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555543
No 194
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=59.62 E-value=30 Score=26.60 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=26.4
Q ss_pred hHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKD----KKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~----EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
|++++|.+||..++.-+. ++.....++..|..++..|+.+|+-+
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777765554331 23344566667777777777776543
No 195
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=59.47 E-value=3 Score=35.39 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=0.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
+.+||.++..|+.+.++|+.+..+|..+..
T Consensus 15 ~~~LE~~l~~l~~el~~L~~~l~eLe~~~~ 44 (118)
T PF08286_consen 15 LSDLESELESLQSELEELKEELEELEEQEV 44 (118)
T ss_dssp ----------------------------HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555555544444444443
No 196
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=59.43 E-value=54 Score=26.19 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=27.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
.+..|+++++.+..|...+..+.+.+....+.-.+++..+...|
T Consensus 34 ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 34 TIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45566666666666666666666666666666666665555443
No 197
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=59.29 E-value=5.4 Score=33.26 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=21.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
.|..|..++..|..++..|..++..|..++..++.....|.+.+
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 56677777777777777777777777777777766665555443
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.27 E-value=1.1e+02 Score=30.49 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+...++.+...+..|+..+...+..+.+++..|.+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666666666666666666655543
No 199
>PLN02678 seryl-tRNA synthetase
Probab=59.25 E-value=79 Score=33.23 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 255 RHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 255 ekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.|..|..+|..++..|..++..+..++.
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555444444
No 200
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=59.19 E-value=48 Score=33.80 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=12.0
Q ss_pred HHhccchHHHHhhhhhHHHHH
Q psy14684 220 RRRGKNKVAAQNCRKRKLDQI 240 (357)
Q Consensus 220 RRRgKNRvAAQnCRKRKLd~I 240 (357)
|+..|+||+.-..=||||-.+
T Consensus 125 r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 125 RRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666665444
No 201
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=59.08 E-value=75 Score=33.45 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=29.5
Q ss_pred cchHHHHhhhhhHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 224 KNKVAAQNCRKRKLD-QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 224 KNRvAAQnCRKRKLd-~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.++++.+.=+..||+ .|..||.++..+..+.-+...++..+.+.+..+..++..|
T Consensus 51 ~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 51 EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 455666665555554 5566666666655555555555555554444444444333
No 202
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=59.07 E-value=59 Score=30.13 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=41.2
Q ss_pred hHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy14684 226 KVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS-QFSQLYKHV 282 (357)
Q Consensus 226 RvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq-kl~~L~q~V 282 (357)
|-+.++|+|+..+...-|+ ..+....++..|.....+|..+-..++- +|+.|...|
T Consensus 101 kpl~~~cqKKEkEykeale-a~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~i 157 (159)
T PF04949_consen 101 KPLGQSCQKKEKEYKEALE-AFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEI 157 (159)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4688999999998877776 4566677777777777777777776664 467776544
No 203
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=59.07 E-value=30 Score=30.01 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=38.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEH-EYLSQECSRVKSQFSQLYKHVFNALRD 288 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr-~~L~~e~~~LKqkl~~L~q~Vf~~LrD 288 (357)
.-.+.|+.|..|+..|-...|.|++.- .....+..+||.+.+.+-.++-.++++
T Consensus 5 ~~~~~~~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~ 59 (104)
T COG4575 5 FTDDAIDQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGD 59 (104)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567889999999999999998776 334556677777777766666555554
No 204
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=59.02 E-value=41 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHhccchHHHHh
Q psy14684 208 LSETQLSLIRDIRRRGKNKVAAQN 231 (357)
Q Consensus 208 LSeeQl~lIRdIRRRgKNRvAAQn 231 (357)
.|...+++|+. .|..|+.-+
T Consensus 21 IT~~NL~lIks----LKeei~emk 40 (201)
T PF13851_consen 21 ITLNNLELIKS----LKEEIAEMK 40 (201)
T ss_pred HHHHHHHHHHH----HHHHHHHHH
Confidence 46666777653 355555543
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.88 E-value=31 Score=33.25 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=38.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
..+|..|+.||..|+-+.|.+..+++++.+.-.++-..|..+-+
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999999888888888877654
No 206
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=58.82 E-value=77 Score=27.78 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=19.6
Q ss_pred cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 224 KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 224 KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
+|++.+. -+.+-.....|+..+...+.+.++|..|...|.+
T Consensus 68 RN~l~s~--~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~k 108 (120)
T PF14931_consen 68 RNLLKSE--AKQREAQQQQLQALIAEKKMELERLRSEYESLQK 108 (120)
T ss_pred HHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555443 2222333344555555555555555555555443
No 207
>KOG0995|consensus
Probab=58.81 E-value=39 Score=36.79 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhccchHHHHhhhhhHHHH----HHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 209 SETQLSLIRDIRRRGKNKVAAQNCRKRKLDQ----ILSLADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 209 SeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~----I~~LEdEV~~Lk~EkekL~kEr~~L 264 (357)
=++|++.|+..+-.+||.|--|+---.-.++ ...|+.+|..+..+.++|.++.-.+
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5677888888888888887776544332222 2334445555555555555444333
No 208
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=58.55 E-value=27 Score=39.95 Aligned_cols=102 Identities=14% Similarity=0.246 Sum_probs=48.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy14684 199 FNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQE-------HEYLSQECSRV 271 (357)
Q Consensus 199 FNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kE-------r~~L~~e~~~L 271 (357)
-+.|+..+.||+.|.+.|=++|=+ |--+++ +..|+.|.++|..+.+.|+.= +..+..|+.++
T Consensus 418 ~~~l~~~f~~s~~qa~aIl~mrL~----------~Lt~le-~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~ei 486 (957)
T PRK13979 418 SENLIEKFGFTDEQAEAILELMLY----------RLTGLE-IVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEV 486 (957)
T ss_pred HHHHHHHhCCCHHHHHHHHhCcHH----------hhhhhH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 455566677777777777665510 011122 344445555555544444421 12244444444
Q ss_pred HHHHHHHHHHHhhhccCC--C-----CCCCCCcccceeecCCCcEEEEec
Q psy14684 272 KSQFSQLYKHVFNALRDS--D-----GNPYSPFEFSLEQTNDGNVELVRR 314 (357)
Q Consensus 272 Kqkl~~L~q~Vf~~LrD~--~-----G~P~SP~ey~Lq~~~dG~V~lVPr 314 (357)
+++|..=-+.. +-++ + -.-+.-++..+-.+.+|-|--+|-
T Consensus 487 k~kygd~RRT~---I~~~~~~~~i~~edlI~~E~v~v~lS~~GyIKr~~~ 533 (957)
T PRK13979 487 KEKYGDERRTS---IIEDDEKAKIDVEELIVVEDVVITLSNEGFIKRIPL 533 (957)
T ss_pred HHHhCCCCCee---eccccccccCCHhHcCCCcceEEEEecCCEEEEccc
Confidence 44443211111 1111 0 011334556677788888777775
No 209
>KOG2077|consensus
Probab=58.20 E-value=61 Score=35.89 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=38.8
Q ss_pred HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 227 VAAQNCRKRKLDQILSLADEVKQMKDKKRHLM---------------------QEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 227 vAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~---------------------kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
.|++-..-|=-++|.+||+|++.++++.+.-. -|.++..-+++++|++|-.|...|
T Consensus 346 ea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 346 EAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444445689999999999988877662 344556667888888887776543
No 210
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=58.14 E-value=74 Score=29.57 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
+..+|+||..|++-.-...+.-.+|++.
T Consensus 38 L~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 38 LAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444555555555444333333444444
No 211
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=58.08 E-value=46 Score=33.87 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kE 260 (357)
|+.+...|..+.+++..+
T Consensus 156 L~~e~~~~~~qlE~~v~~ 173 (342)
T PF06632_consen 156 LESEANKLLKQLEKFVNA 173 (342)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 212
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=58.05 E-value=31 Score=27.87 Aligned_cols=41 Identities=10% Similarity=0.241 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHE-YLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~-~L~~e~~~LKqkl~~L~q~V 282 (357)
+|+.++..|..+.+.|..+.. ......+++++++......+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a 43 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDA 43 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665542 23333444444444444333
No 213
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.03 E-value=1.5e+02 Score=26.88 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=9.3
Q ss_pred HHHHHhcCCCCHHHHHHH
Q psy14684 199 FNERLSKYDLSETQLSLI 216 (357)
Q Consensus 199 FNelLs~~~LSeeQl~lI 216 (357)
|=..|...+||++|-+.|
T Consensus 7 ~v~~Le~~Gft~~QAe~i 24 (177)
T PF07798_consen 7 FVKRLEAAGFTEEQAEAI 24 (177)
T ss_pred HHHHHHHCCCCHHHHHHH
Confidence 344455555666665443
No 214
>KOG0837|consensus
Probab=57.91 E-value=51 Score=32.96 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDG 291 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G 291 (357)
.+=+.+..|+.+...|+-++..|..++.+|+..++++.+.|..++....+
T Consensus 224 rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ngc~ 273 (279)
T KOG0837|consen 224 RKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNGCQ 273 (279)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34467888999999999999999999999999999999999999885433
No 215
>KOG0483|consensus
Probab=57.91 E-value=52 Score=31.20 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=47.4
Q ss_pred hcCCHHHHHHHHhcCCCCHHHHHHHHHHHH-hccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 192 INLPMDEFNERLSKYDLSETQLSLIRDIRR-RGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 192 VnLPV~EFNelLs~~~LSeeQl~lIRdIRR-RgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
..|.-+.-+.|.+..+|++-|++.-=+-|| |=|+| .||.+-+.|+.+-+.|..+...|..+..+
T Consensus 73 ~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~k---------------qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~e 137 (198)
T KOG0483|consen 73 KKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTK---------------QLEKDYESLKRQLESLRSENDRLQSEVQE 137 (198)
T ss_pred cccChHHHHHHHHhhCCChhHHHHHHhhccccccch---------------hhhhhHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344455677778888899999996666665 44532 45555566666666666666666666666
Q ss_pred HHHHHHHHH
Q psy14684 271 VKSQFSQLY 279 (357)
Q Consensus 271 LKqkl~~L~ 279 (357)
|+..+..+.
T Consensus 138 L~~~~~~~~ 146 (198)
T KOG0483|consen 138 LVAELSSLK 146 (198)
T ss_pred HHHHHhhhh
Confidence 666655443
No 216
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=57.82 E-value=1.1e+02 Score=30.34 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhh-------hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNC-------RKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnC-------RKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~ 268 (357)
.++|++++.+ =-+-++.-++.+++.=++-||-+- =..+.-.-..+..|+..-+.+.+.|..++..|++++
T Consensus 140 ldel~e~~~~---el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV 216 (258)
T PF15397_consen 140 LDELNEMRQM---ELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555665554 223334444444444455444332 223333445566777777777888888888888888
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy14684 269 SRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 269 ~~LKqkl~~L~q~Vf~~ 285 (357)
++|.......-..||..
T Consensus 217 ~~L~~~~~~~Re~iF~d 233 (258)
T PF15397_consen 217 EQLQAQAQDPREVIFAD 233 (258)
T ss_pred HHHHHhhcchHHHhhHH
Confidence 88877776666667755
No 217
>PF13166 AAA_13: AAA domain
Probab=57.74 E-value=1.2e+02 Score=32.31 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.++.++..+..+...+..++..+..++.+|+.++
T Consensus 421 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 454 (712)
T PF13166_consen 421 ELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL 454 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555443
No 218
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.62 E-value=1.5e+02 Score=30.56 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
....|-.+++.|+.+...|..+...+..++.++-.++-
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEELLLRIP 104 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34567777777788877777777777777777666654
No 219
>KOG4677|consensus
Probab=57.57 E-value=75 Score=34.18 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=33.7
Q ss_pred hcchHHHHHHHc---CCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHH
Q psy14684 171 QMTRDEKKARAL---NIPIPVNDIINLPMDEFNERLSKYDLSETQLSLI 216 (357)
Q Consensus 171 ~~SRDE~RA~al---~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lI 216 (357)
.|+|-|+.|... ..-++.++=+.++..||.++--..+||.++++-|
T Consensus 280 ~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~ 328 (554)
T KOG4677|consen 280 FLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHI 328 (554)
T ss_pred HhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHH
Confidence 677777777532 2233444448888999999999999999998876
No 220
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=57.28 E-value=59 Score=26.25 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+..+..++-.|+-|+..|.++++.++..|..+..
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666666555543
No 221
>KOG0249|consensus
Probab=57.23 E-value=70 Score=36.20 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=39.6
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 233 RKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 233 RKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
|.--++.+..|+.++..++.+.+.+.+++..|...+..|++.+.+|..
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333477888899999999988888888888888888888888888874
No 222
>PHA02562 46 endonuclease subunit; Provisional
Probab=57.13 E-value=66 Score=32.99 Aligned_cols=6 Identities=33% Similarity=0.927 Sum_probs=2.8
Q ss_pred hhhccc
Q psy14684 39 HLYGRR 44 (357)
Q Consensus 39 ~~~gkr 44 (357)
-|||+.
T Consensus 50 ~l~G~~ 55 (562)
T PHA02562 50 ALFGKP 55 (562)
T ss_pred HHcCCC
Confidence 445543
No 223
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=57.10 E-value=66 Score=29.49 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhc
Q psy14684 201 ERLSKYDLSETQLSLIRDIRRRG 223 (357)
Q Consensus 201 elLs~~~LSeeQl~lIRdIRRRg 223 (357)
.|+++..||++|..-||+|++-.
T Consensus 50 ~mf~~l~LTd~QR~qmr~im~~~ 72 (162)
T PRK12751 50 NMFDGINLTEQQRQQMRDLMRQS 72 (162)
T ss_pred hhhccCCCCHHHHHHHHHHHHHh
Confidence 37889999999999999998743
No 224
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=57.04 E-value=53 Score=29.16 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
....+|.+|..|...+..|..++..+...+..++..+...
T Consensus 29 ~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 29 ENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445556666666666666666666666666666655443
No 225
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.01 E-value=1.2e+02 Score=28.09 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=27.4
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 233 RKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 233 RKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
...-.+.|..|+.++..|..+...|......+.+...+.++..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~ 164 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777666666555555544433
No 226
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=56.80 E-value=19 Score=30.32 Aligned_cols=50 Identities=18% Similarity=0.372 Sum_probs=29.3
Q ss_pred HHHHHHcCCCCChhhH----------hcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHh
Q psy14684 176 EKKARALNIPIPVNDI----------INLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQN 231 (357)
Q Consensus 176 E~RA~al~IPFSvdeI----------VnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQn 231 (357)
.+.|+.++|-+|+++| -+|++++|...|...++|-++. |...|+-+.+++
T Consensus 57 ~q~ak~~gI~vsd~evd~~i~~ia~~n~ls~~ql~~~L~~~G~s~~~~------r~~ir~~i~~~~ 116 (118)
T PF09312_consen 57 LQEAKRLGIKVSDEEVDEAIANIAKQNNLSVEQLRQQLEQQGISYEEY------REQIRKQILIQR 116 (118)
T ss_dssp HHHHHHCT----HHHHHHHHHHHHHHTT--HHHHHHHCHHCT--HHHH------HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH------HHHHHHHHHHHH
Confidence 3678899999999988 3678888888888888877654 444455555543
No 227
>KOG0500|consensus
Probab=56.73 E-value=52 Score=35.51 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=65.3
Q ss_pred HHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHH----hc--cchHHHHhhhhhHHH-HH-HhHHHHHH
Q psy14684 177 KKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRR----RG--KNKVAAQNCRKRKLD-QI-LSLADEVK 248 (357)
Q Consensus 177 ~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRR----Rg--KNRvAAQnCRKRKLd-~I-~~LEdEV~ 248 (357)
+-|....+-+| +|--|+.+||-+.|+. ..++...++-.=|. +| .--.+++.|+-...+ .. ..||.++.
T Consensus 396 RtanvrSvGYS--DlfvLskdDl~~aL~e--YP~a~~~L~~kgr~iL~kd~lld~~~~~~~~~~~d~~E~~~~~Le~~~~ 471 (536)
T KOG0500|consen 396 RTANVRSVGYS--DLFVLSKDDLWEALSE--YPDARKRLEEKGRQILHKDGLLDENELGAMQDPSDDEEKRDESLENEVV 471 (536)
T ss_pred ceeeeeeeccc--eeeEeeHHHHHHHHHh--CCHHHHHHHHHHHHHhhhccccchhhhhhccCcccchhHHHHHHHHHHH
Confidence 44444556677 7999999999999999 56777777622222 11 112355667763322 22 23788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
.|+...+++. .++.....+|+++|..|...+-..
T Consensus 472 ~l~~Rl~~i~---~e~~~~~~km~qr~~~le~~~~~~ 505 (536)
T KOG0500|consen 472 LLQLRLARIL---DEYHSSQQKMKQRLSVLEKQLKPG 505 (536)
T ss_pred HHHHHHHHHH---hhhhhhhHHHHHHHHHHHHHhhhh
Confidence 7777555444 445577888889988887665543
No 228
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.72 E-value=1.1e+02 Score=25.12 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+|.+||..+.-...-.+.|.--+.+....+++++.++..|...+-
T Consensus 9 Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888887777777777777777778888888888888876544
No 229
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.55 E-value=92 Score=32.92 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=35.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHH--------HHHHhHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy14684 199 FNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKL--------DQILSLADEVKQMK---DKKRHLMQEHEYLSQE 267 (357)
Q Consensus 199 FNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKL--------d~I~~LEdEV~~Lk---~EkekL~kEr~~L~~e 267 (357)
+...+....+.+++++.| .+|++.-+.-+||. +.+..++.++..|. .+.+.|..++..+..+
T Consensus 289 l~~~~~~l~~dp~~L~el-------e~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~ 361 (563)
T TIGR00634 289 LQNYLDELEFDPERLNEI-------EERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEE 361 (563)
T ss_pred HHHHHHhCCCCHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 444455556666666654 34444444444443 23333333333322 2344455555555555
Q ss_pred HHHHHHHHHHH
Q psy14684 268 CSRVKSQFSQL 278 (357)
Q Consensus 268 ~~~LKqkl~~L 278 (357)
+.++-.+|...
T Consensus 362 l~~~a~~Ls~~ 372 (563)
T TIGR00634 362 LDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 230
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=56.55 E-value=72 Score=35.48 Aligned_cols=113 Identities=16% Similarity=0.285 Sum_probs=59.8
Q ss_pred hhhHhcC---CHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH---
Q psy14684 188 VNDIINL---PMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEH--- 261 (357)
Q Consensus 188 vdeIVnL---PV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr--- 261 (357)
.|+||.+ +-+.-+.+++.+.||+.|.+.|=++|=+ |-.++ .+..|+.|.++|+.+.+.|+.=+
T Consensus 395 id~vI~iir~s~~ak~~l~~~f~~~~~qa~~Il~m~L~----------~Lt~l-e~~kl~~E~~~l~~ei~~l~~iL~s~ 463 (742)
T PRK05561 395 IDEVIRIIRESDEPKANLMARFDLSEIQAEAILELRLR----------RLAKL-EEIEIRKEQDELRKEIAELEAILASE 463 (742)
T ss_pred HHHHHHHHhcCccHHHHHHHHhCCCHHHHHHHHHhhHH----------HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 5666643 3335666777788999999988666511 11112 23455555555555555544321
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhccCCC-------CCCCCCcccceeecCCCcEEEEec
Q psy14684 262 ----EYLSQECSRVKSQFSQLYKHVFNALRDSD-------GNPYSPFEFSLEQTNDGNVELVRR 314 (357)
Q Consensus 262 ----~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~-------G~P~SP~ey~Lq~~~dG~V~lVPr 314 (357)
..+..|+.+++++|..=-+. .+.+.. -..+--+++.+-.|.+|-|--+|-
T Consensus 464 ~~l~~~i~~eL~~ik~kfg~~RRT---~I~~~~~~~~i~~edlI~~e~~lVllTk~GyIKR~~l 524 (742)
T PRK05561 464 RKLRKLIKKELKADAKKFGDPRRT---PIEEAEEAIAIDEEALIPDEPVTVVLSKKGWVRRAKG 524 (742)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCce---eeeccccccccchhhcccCcceEEEEecCCEEEeccc
Confidence 22355555555555421111 111111 112445667777788887776665
No 231
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=56.37 E-value=55 Score=28.96 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=38.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.|-+.+.+|++.++.|.-+...|.+.-..+..++++|+.++..++..
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567788888888888888888888888999999999888877654
No 232
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=56.26 E-value=1.5e+02 Score=27.63 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy14684 260 EHEYLSQECSRVKSQ 274 (357)
Q Consensus 260 Er~~L~~e~~~LKqk 274 (357)
++..+..++..++.+
T Consensus 117 ~l~~~~~~l~~~~~~ 131 (322)
T TIGR01730 117 DLEAAKASLASAQLN 131 (322)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333344444333
No 233
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.22 E-value=64 Score=34.65 Aligned_cols=23 Identities=9% Similarity=0.080 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 261 HEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 261 r~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+..|.+++..++.++....+.+.
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 234
>PRK10132 hypothetical protein; Provisional
Probab=56.16 E-value=50 Score=28.40 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHE-YLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~-~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
++..|..++..|-...+.|+++-. .-..+..++|.+++.+....-..|.
T Consensus 13 q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 13 GVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777777777777777776552 3344566667666665555443443
No 235
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=56.11 E-value=44 Score=26.72 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIRR 221 (357)
Q Consensus 207 ~LSeeQl~lIRdIRR 221 (357)
.+|++++..|+.|++
T Consensus 38 ~y~~~dv~~l~~i~~ 52 (91)
T cd04766 38 RYSERDIERLRRIQR 52 (91)
T ss_pred eECHHHHHHHHHHHH
Confidence 478888888877763
No 236
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=55.78 E-value=70 Score=27.17 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=6.6
Q ss_pred HhcCCCCHHHHHHH
Q psy14684 203 LSKYDLSETQLSLI 216 (357)
Q Consensus 203 Ls~~~LSeeQl~lI 216 (357)
|+..++|=+++..+
T Consensus 51 lr~~G~~L~~I~~~ 64 (118)
T cd04776 51 GKRLGFSLEEIREL 64 (118)
T ss_pred HHHCCCCHHHHHHH
Confidence 34445555554443
No 237
>KOG0977|consensus
Probab=55.75 E-value=96 Score=33.73 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
..||+++..|+.++.+|..++..++
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455555555555555555554444
No 238
>KOG0930|consensus
Probab=55.70 E-value=25 Score=35.86 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHHhcc
Q psy14684 206 YDLSETQLSLIRDIRRRGK 224 (357)
Q Consensus 206 ~~LSeeQl~lIRdIRRRgK 224 (357)
.+||++|..-+-+||||.+
T Consensus 9 ~~Ls~~E~~eL~~ir~rk~ 27 (395)
T KOG0930|consen 9 NDLSEEERMELENIRRRKQ 27 (395)
T ss_pred CCCCHHHHHhHHHHHHHHH
Confidence 4689999888888887643
No 239
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.57 E-value=57 Score=25.39 Aligned_cols=41 Identities=12% Similarity=0.304 Sum_probs=30.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.+..|+..+..++.|++.|..+++.+...++.| -.||.-|-
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l----l~lYE~Vs 48 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDL----LSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 355677888889999999999998888888444 45665554
No 240
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=55.51 E-value=1.4e+02 Score=25.84 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
...++.++..++.+...+..+...|..+...+++++..+
T Consensus 50 nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 50 NLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544
No 241
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=55.42 E-value=32 Score=35.58 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
+|+...|.+|-..|+.|+++|..|+++|+.++.
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777788888888877777765554
No 242
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=55.39 E-value=71 Score=30.33 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRV---KSQFSQLY 279 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L---Kqkl~~L~ 279 (357)
.+....+.-....+|.+|+++|++|+.+|+.++.++ +++...|.
T Consensus 60 ~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~ 106 (276)
T PRK13922 60 FVSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555667788999999999998888887744 55555444
No 243
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.12 E-value=86 Score=26.47 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
-...|..|+.|..++..|.+|+.+|..+++..+..-..|.
T Consensus 44 e~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 44 EARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999888888877776655543
No 244
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=55.09 E-value=82 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
.=..-|+.+++.|..|...+..+..++++.+..++..+...
T Consensus 24 rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~ 64 (201)
T PRK02195 24 RYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAW 64 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777777777777777777777777777766644
No 245
>PF15058 Speriolin_N: Speriolin N terminus
Probab=55.00 E-value=30 Score=33.06 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
.+++.|..||++|++.+ +|.+|..+||.-|.+-++
T Consensus 12 hqierLv~ENeeLKKlV-rLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 12 HQIERLVRENEELKKLV-RLIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 34444445555544433 233444455544444443
No 246
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.00 E-value=59 Score=29.28 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
..|..|+.++..|..++.+|..|...+..+...|-+.+......|
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666666555555554444
No 247
>KOG4460|consensus
Probab=54.91 E-value=81 Score=34.81 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKL--DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKL--d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
++-|.=|+.--.+=.||-..-.|+=|-.=-|-+-+-||+++. +.|.++++|.+.+....++|.+..++....-+.|-+
T Consensus 558 ~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~ 637 (741)
T KOG4460|consen 558 EECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMN 637 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333433333323333343333333333334556667887653 345555555555555555555444444444444444
Q ss_pred HHHHHH
Q psy14684 274 QFSQLY 279 (357)
Q Consensus 274 kl~~L~ 279 (357)
++..|.
T Consensus 638 ~~~~L~ 643 (741)
T KOG4460|consen 638 RMKKLL 643 (741)
T ss_pred HHHHHH
Confidence 444443
No 248
>KOG0995|consensus
Probab=54.83 E-value=92 Score=34.09 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=11.0
Q ss_pred hhhhhhhhhhcccccccC
Q psy14684 32 AVAQKKYHLYGRRLFHDH 49 (357)
Q Consensus 32 ~vaqkk~~~~gkr~~~~q 49 (357)
|+---+=++|++|.---+
T Consensus 31 pT~~~~valf~~r~S~~s 48 (581)
T KOG0995|consen 31 PTSGTSVALFDRRPSLHS 48 (581)
T ss_pred CCCCcccccCCCCccccc
Confidence 455555668888764443
No 249
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=54.52 E-value=1.4e+02 Score=27.14 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+.-.+.|.. |+..+.+...++.-++++-++|..- .---..|..||..|.+.+.....+...++....-..+.+.++
T Consensus 33 ~~~~~qL~~--l~~y~~ey~q~~~~k~~~G~s~~q~-~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~~~ 108 (148)
T COG2882 33 ENAEEQLKM--LSGYRNEYEQNLNEKLKSGVSAAQW-QNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIEL 108 (148)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 7788888888888888999988655 444678999999999988888877776666655554444443
No 250
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=54.44 E-value=6.8 Score=36.17 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+|.+.|+.+.++|+-|...|+.|+ .+++++.
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 556667777777777777777777 6666653
No 251
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=54.40 E-value=45 Score=31.51 Aligned_cols=19 Identities=11% Similarity=0.455 Sum_probs=7.8
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDKK 254 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~Ek 254 (357)
+++.+..+|.++.+.+.+.
T Consensus 160 ~~~d~l~ie~~L~~v~~eI 178 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEI 178 (262)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 252
>PRK09343 prefoldin subunit beta; Provisional
Probab=54.15 E-value=70 Score=27.54 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=27.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
-|-+.+.+|+..++-+..+...|.+....|...+.++..+|..|.+
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666665554
No 253
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=53.47 E-value=81 Score=33.23 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQ-------EHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~k-------Er~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+..|.+||.++..++.+...|+. ++..|..++..|++++..+-..+.
T Consensus 285 ~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 285 YQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888888888888887764 356677777777777777765544
No 254
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=53.37 E-value=23 Score=33.05 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=29.5
Q ss_pred hHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKD--KKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~--EkekL~kEr~~L~~e~~~LKqkl 275 (357)
-++++|..|+.++..|+. .+|+-..++.+|..++.+++.+|
T Consensus 179 ~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 179 ERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKKEL 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 346777888888888855 45555677778888888877653
No 255
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.26 E-value=53 Score=29.82 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=35.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSD 290 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~ 290 (357)
+-+-..||.|++.++.+.+.-++|+..=-.+-.+|-..+.+=|+.+++++.+..
T Consensus 33 ~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~ss 86 (138)
T COG3105 33 LKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAKSS 86 (138)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334456777777777777777777766666666666666666666666665443
No 256
>KOG1853|consensus
Probab=53.24 E-value=50 Score=33.21 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+.-.+--++.+.|..++.++....+.|+..+..|-
T Consensus 84 ~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 84 DQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555555555555555555444444
No 257
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.98 E-value=49 Score=27.10 Aligned_cols=35 Identities=9% Similarity=0.177 Sum_probs=23.3
Q ss_pred hcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhc
Q psy14684 171 QMTRDEKKARALNIPIPVNDIINLPMDEFNERLSK 205 (357)
Q Consensus 171 ~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~ 205 (357)
.|.+.-......-=-|.-++|..|+++||..|=..
T Consensus 23 ~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~ 57 (100)
T PF01486_consen 23 KLRKENESLQKELRHLMGEDLESLSLKELQQLEQQ 57 (100)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHh
Confidence 34444444444444677889999999999988443
No 258
>PRK04406 hypothetical protein; Provisional
Probab=52.94 E-value=61 Score=26.15 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=28.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
++.-+|+-|+.|-...-+..+++..|.+++..|.+++..+-
T Consensus 19 ~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 19 QLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666777777777777777777777777877776654
No 259
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=52.74 E-value=86 Score=24.95 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
...+.+.+.|..|++.....+..+-.++.+|+.+++.|-++
T Consensus 22 ~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 22 SVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666555555555666666666666666554
No 260
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.69 E-value=47 Score=28.01 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.+.-|+..++.|....++|..++..+..++..+...+..++
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~ 128 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555556666666666666666666666666666665543
No 261
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=52.56 E-value=13 Score=29.77 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred HcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhH
Q psy14684 181 ALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRK 236 (357)
Q Consensus 181 al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRK 236 (357)
+.+--+..|.|.-|+|.|+++.+.- =.+++++++..|.+.+|--+|.+.=.|+
T Consensus 12 a~~~~i~~d~LsllsV~El~eRIal---Lq~EIeRlkAe~~kK~~srsAAeaLFrr 64 (65)
T COG5509 12 AFGHEIGNDALSLLSVAELEERIAL---LQAEIERLKAELAKKKASRSAAEALFRR 64 (65)
T ss_pred ccccccchhHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHhhhccHHHHHHHHhc
Confidence 3444567778999999999999984 6788999999998888877776654443
No 262
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=52.50 E-value=60 Score=32.94 Aligned_cols=47 Identities=13% Similarity=0.279 Sum_probs=40.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFN 284 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~ 284 (357)
.+|.+||+.+..|....+.+......+.+++..++++|..|...+-+
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 46888899999999988888888888999999999999999887764
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.44 E-value=84 Score=29.08 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=12.1
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHH
Q psy14684 233 RKRKLDQILSLADEVKQMKDKKR 255 (357)
Q Consensus 233 RKRKLd~I~~LEdEV~~Lk~Eke 255 (357)
|...+..+..|+.++..|+.+.+
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544
No 264
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=52.37 E-value=79 Score=25.18 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
|...++.+..+++....++..|..|++..-.++..+|
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~ 46 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAY 46 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444433443333
No 265
>KOG4687|consensus
Probab=52.34 E-value=61 Score=33.00 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy14684 231 NCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNP 293 (357)
Q Consensus 231 nCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P 293 (357)
+=|-.+++....|...-..|.-......-|..+|..|+++|+.+...|-.++|-.|+.+-..|
T Consensus 153 rdeanfic~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhp 215 (389)
T KOG4687|consen 153 RDEANFICAHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHP 215 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCc
Confidence 333444555555555555555555555666668888899999999999999998887655544
No 266
>KOG0250|consensus
Probab=52.10 E-value=1.3e+02 Score=35.34 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=10.7
Q ss_pred HHHhhhhhHHHHHHhHHHHH
Q psy14684 228 AAQNCRKRKLDQILSLADEV 247 (357)
Q Consensus 228 AAQnCRKRKLd~I~~LEdEV 247 (357)
+++.|..+...+|.+++.+.
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555565555544
No 267
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=52.09 E-value=44 Score=33.64 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.+|+.++.+|+.++..|..++..+..++.+++.++..|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 11 SELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666666666666665554
No 268
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.04 E-value=82 Score=27.61 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEH 261 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr 261 (357)
+.|..|+.++..++.+.+.+..+.
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRY 168 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555555443
No 269
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=51.85 E-value=68 Score=30.95 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
.|..+|..+++....-+.+.++++..-|+.|+.-.+++
T Consensus 66 ~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~ 103 (228)
T PRK06800 66 RERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQET 103 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333344444555555554444333
No 270
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=51.74 E-value=44 Score=34.19 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
..|+.++..|..++..|..++..+.+++..++.++..|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777777777777777777777777777664
No 271
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=51.65 E-value=35 Score=29.19 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
..+..+..+...+.+|.+.|.++...|+.++..|...
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555566666666666666666666666666665544
No 272
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=51.46 E-value=42 Score=27.11 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
.+..++..++.+.++|..|...|.-|...+.
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555555444
No 273
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=51.36 E-value=22 Score=32.03 Aligned_cols=35 Identities=17% Similarity=0.444 Sum_probs=26.0
Q ss_pred CChhhHhcCCHHHHHHHHhc-------CCCCHHHHHHHHHHH
Q psy14684 186 IPVNDIINLPMDEFNERLSK-------YDLSETQLSLIRDIR 220 (357)
Q Consensus 186 FSvdeIVnLPV~EFNelLs~-------~~LSeeQl~lIRdIR 220 (357)
++.|+|.+||.+||-+||.. -+++..+..+|+.|+
T Consensus 10 ~~l~~L~~m~~~e~~~l~~ar~RRs~~RG~~~~~~~Llkki~ 51 (135)
T TIGR01025 10 YTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLR 51 (135)
T ss_pred cCHHHHHcCCHHHHHHHcCcccCcccccCCchhhHHHHHHHH
Confidence 67899999999999999853 235556666665555
No 274
>PRK02224 chromosome segregation protein; Provisional
Probab=51.29 E-value=95 Score=34.03 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=26.4
Q ss_pred hHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 226 KVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 226 RvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
+++.-.-+.++++.+.+++.++..+..+...|..++..|......++.++..
T Consensus 580 ~~~~l~~~~~~le~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 631 (880)
T PRK02224 580 KLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAE 631 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444556666666666666655555555555554444444444443333
No 275
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.19 E-value=68 Score=25.00 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.....+..+.+++.+++..+..+.++|+.++..|-
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555555555555555543
No 276
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.19 E-value=39 Score=33.00 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=16.1
Q ss_pred HHHHcCCCCChhhHhcCCHHHHHHHHh
Q psy14684 178 KARALNIPIPVNDIINLPMDEFNERLS 204 (357)
Q Consensus 178 RA~al~IPFSvdeIVnLPV~EFNelLs 204 (357)
|+...-++++...+++.|++-+.....
T Consensus 37 r~~~~~~~~p~~~~~~~p~~~~~~~~~ 63 (283)
T TIGR00219 37 RSDMFTAVTLNYYIQNRPREVFDGISE 63 (283)
T ss_pred eeeEeeeeEHHHHHHhhHHHHHHHHHH
Confidence 344445667776777777666655544
No 277
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=51.06 E-value=72 Score=28.10 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=45.5
Q ss_pred cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 224 KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 224 KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+.|.+|.-=|--=..+|..||.|.+.++.-+..|.+.+..|...+.+.+.++..|.
T Consensus 18 rdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34555555555556789999999999999999999999999999999988887654
No 278
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.96 E-value=42 Score=36.33 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+|+.-+..++.|+++|..|+++|+.-+..|+++|..+...
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555577788888889999999999999998776544
No 279
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=50.78 E-value=80 Score=27.76 Aligned_cols=6 Identities=33% Similarity=0.113 Sum_probs=2.2
Q ss_pred CCCCHH
Q psy14684 206 YDLSET 211 (357)
Q Consensus 206 ~~LSee 211 (357)
.+||=+
T Consensus 55 ~G~sL~ 60 (134)
T cd04779 55 QRLSLA 60 (134)
T ss_pred CCCCHH
Confidence 333433
No 280
>PRK14127 cell division protein GpsB; Provisional
Probab=50.69 E-value=48 Score=28.74 Aligned_cols=32 Identities=34% Similarity=0.384 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 251 KDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 251 k~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
-.+.+.|.+|+..|..++..|+.++..+...+
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555555555555555555555433
No 281
>PHA00489 scaffolding protein
Probab=50.66 E-value=1.2e+02 Score=26.18 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=41.2
Q ss_pred CCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 194 LPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 194 LPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
|+.++|+..|.+ |...+++-- -|.+.+..|...+.....+-+.|..-.+.|.++...|--
T Consensus 3 l~~eehe~iLnk--L~dpEl~~s------------------ErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLiv 62 (101)
T PHA00489 3 LSLEEHEAILNK--LGDPELTES------------------ERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIV 62 (101)
T ss_pred CCHHHHHHHHHH--cCChhhhhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 678899999998 666665431 225556666666666666666665555555555555554
Q ss_pred HHHHHHH
Q psy14684 274 QFSQLYK 280 (357)
Q Consensus 274 kl~~L~q 280 (357)
-=+.|++
T Consensus 63 sNskLFr 69 (101)
T PHA00489 63 SNSKLFR 69 (101)
T ss_pred hhHHHHH
Confidence 4445553
No 282
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=50.63 E-value=1e+02 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=21.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+.+.++..+..+|+.+.+.|.+|+..+...+.++...+
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555566666666666666666665555443
No 283
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.61 E-value=1.4e+02 Score=33.35 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=59.1
Q ss_pred hhhHhcCCHHHHHHHHhcC--CCCHHHHHHHHHHHHhccchHHHH-hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 188 VNDIINLPMDEFNERLSKY--DLSETQLSLIRDIRRRGKNKVAAQ-NCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 188 vdeIVnLPV~EFNelLs~~--~LSeeQl~lIRdIRRRgKNRvAAQ-nCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L 264 (357)
-+.-...+-.|..++|... -|.++-+......|.....|+..+ ....+.++.+..|+++++.|+...++|....+++
T Consensus 526 ~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 526 SDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666542 133333444444444555555543 3455667788888888888888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14684 265 SQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 265 ~~e~~~LKqkl~~L~q~V 282 (357)
...-+.|.+++..+.+.+
T Consensus 606 ~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 606 KDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766554
No 284
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.31 E-value=70 Score=29.19 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=22.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+..|.||+..|.-+...|......|..|..+|=+++
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666665554
No 285
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=50.23 E-value=96 Score=32.62 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLI 216 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lI 216 (357)
..++..+|..+.|+++|.+.|
T Consensus 371 ~~~~~~~l~~~~~~~~q~~~l 391 (439)
T PHA02592 371 RSELTEELSDNKDFGEYADKL 391 (439)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 444444455555555444444
No 286
>PLN02320 seryl-tRNA synthetase
Probab=49.89 E-value=1.5e+02 Score=31.88 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 255 RHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 255 ekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.|..|...|..++..|..++..+..++.
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555444443
No 287
>PRK04325 hypothetical protein; Provisional
Probab=49.78 E-value=81 Score=25.25 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
++.-+|+-|+.|-...-+..+++..|.+++..|.+++..+-
T Consensus 17 klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 17 QLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666677777666777777777788888888877664
No 288
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=49.67 E-value=83 Score=25.87 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=9.4
Q ss_pred CCCHHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIRR 221 (357)
Q Consensus 207 ~LSeeQl~lIRdIRR 221 (357)
..+++++..|+.|++
T Consensus 38 ~Y~~~dl~~l~~I~~ 52 (102)
T cd04775 38 LYSEADLSRLEKIVF 52 (102)
T ss_pred eeCHHHHHHHHHHHH
Confidence 356666666666654
No 289
>KOG3650|consensus
Probab=49.65 E-value=68 Score=28.15 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=38.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH--VFN 284 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~--Vf~ 284 (357)
+-++.+|+..++.|-+..+..+.|.-.|+.|.+-|-|=++.|... ||+
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQ 111 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQ 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhh
Confidence 567788888888888888888888888888888888888877653 664
No 290
>PRK00736 hypothetical protein; Provisional
Probab=49.26 E-value=81 Score=24.87 Aligned_cols=41 Identities=10% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
++..+|+-|+.|-...-+..+++..|.+++..|.+++..+-
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777777777777777777888888888888887654
No 291
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=49.23 E-value=1.6e+02 Score=24.91 Aligned_cols=16 Identities=6% Similarity=0.356 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLM 258 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~ 258 (357)
|+..+..|..+...|.
T Consensus 85 l~~~~~~l~~~~~~l~ 100 (118)
T cd04776 85 IEKRRAELEQQRRDID 100 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 292
>KOG0994|consensus
Probab=48.68 E-value=1.7e+02 Score=35.21 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.9
Q ss_pred HHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHH
Q psy14684 178 KARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLI 216 (357)
Q Consensus 178 RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lI 216 (357)
+..+|.||.+-+||.+| .+++++.+++ |+.-++.+-
T Consensus 1500 ~vL~l~lp~tpeqi~~L-~~~I~e~v~s--L~nVd~IL~ 1535 (1758)
T KOG0994|consen 1500 EVLALELPLTPEQIQQL-TGEIQERVAS--LPNVDAILS 1535 (1758)
T ss_pred HHHhccCCCCHHHHHHH-HHHHHHHHHh--cccHHHHHH
Confidence 34468999999999999 7899999998 776665554
No 293
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=48.53 E-value=31 Score=27.30 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
+||+.|+.+...|...+.+|..|..-||+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566666666666666666666666654
No 294
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=48.48 E-value=1.1e+02 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+....+.|..++++...++..++++|..|
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555566666666666543
No 295
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=48.10 E-value=1e+02 Score=34.55 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=52.3
Q ss_pred CHHHH-HHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHH
Q psy14684 195 PMDEF-NERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEH-------EYLSQ 266 (357)
Q Consensus 195 PV~EF-NelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr-------~~L~~ 266 (357)
..++. ..|...+.||++|.+.|=++|=+ |-.++ .+..|+.|.+.|+.+.+.|+.=+ ..+..
T Consensus 394 ~~~~~~~~L~~~~~~~~~qa~~il~m~L~----------~Lt~~-e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~ 462 (800)
T TIGR01063 394 NTEEAKTRLVERFSLSEIQAQAILDMRLQ----------RLTGL-EREKLQEEYKELLELIADLEDILASEERVLEIIRE 462 (800)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHhHHH----------HHhHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34444 34444457888777777555411 11112 24455555555555555555322 33445
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCC------CCCCCCcccceeecCCCcEEEEecC
Q psy14684 267 ECSRVKSQFSQLYKHVFNALRDSD------GNPYSPFEFSLEQTNDGNVELVRRQ 315 (357)
Q Consensus 267 e~~~LKqkl~~L~q~Vf~~LrD~~------G~P~SP~ey~Lq~~~dG~V~lVPr~ 315 (357)
|+.+++++|..=-+. .+-+++ -..+.-+++.+-.+.+|-|--+|-.
T Consensus 463 EL~eikkkfg~~RRT---~I~~~~~~~i~~edli~~e~~~vllS~~GyIKri~~~ 514 (800)
T TIGR01063 463 ELEEIKEQFGDPRRT---EIVYDESEDIDIEDLIARENVVVTLSHNGYVKRVPVS 514 (800)
T ss_pred HHHHHHHHhCCCCCc---eeecccccccchhhccCcceEEEEEcCCCEEEecchh
Confidence 555555555421011 121111 0112335566778889988777753
No 296
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=48.03 E-value=1.7e+02 Score=27.20 Aligned_cols=70 Identities=27% Similarity=0.422 Sum_probs=33.7
Q ss_pred HcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14684 181 ALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 181 al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kE 260 (357)
.+.|||| .+..=-+.++-..+++ +.|+=...||.|||.+.+++-... +.+ .--||++..+..+.++|..+
T Consensus 97 ~Iri~iP--~lT~E~R~elvK~~k~--~~E~aKv~iRniRr~~~~~iKk~~--k~~----~iseD~~k~~e~eiQkltd~ 166 (185)
T PRK00083 97 VIRLPIP--PLTEERRKELVKQVKK--EAEEAKVAIRNIRRDANDKLKKLE--KDK----EISEDELKRAEDEIQKLTDK 166 (185)
T ss_pred EEEecCC--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh--hcC----CCChHHHHHHHHHHHHHHHH
Confidence 4566666 2222224455555555 555555666777766655543211 110 01245555555555555433
No 297
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=47.98 E-value=1.1e+02 Score=27.02 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=31.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+++|..|+.|+.......++-...+.+|...+..+...+..+...
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777777777777777777777777666666665554
No 298
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=47.96 E-value=47 Score=27.89 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
.+...|..|++.|..|+....++++..
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555554433
No 299
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=47.74 E-value=1.4e+02 Score=23.73 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHH
Q psy14684 191 IINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEV-----KQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 191 IVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV-----~~Lk~EkekL~kEr~~L~ 265 (357)
+..=++++++..|.. |...|..++-.|.+-. .+++.+.+.+... ..-..+...++++...+.
T Consensus 11 ~l~P~l~~~~~~l~e--l~~sQ~~L~~~i~~~~-----------~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~ 77 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQE--LRQSQEELLQQIDRLN-----------EKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLH 77 (92)
T ss_pred HHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Confidence 444568888888888 8888888887776422 1133333322111 113444555556666666
Q ss_pred HHHHHHHHHHHHH
Q psy14684 266 QECSRVKSQFSQL 278 (357)
Q Consensus 266 ~e~~~LKqkl~~L 278 (357)
..+..++.++..|
T Consensus 78 ~~l~~lk~R~~~L 90 (92)
T PF14712_consen 78 ERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666555
No 300
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=47.70 E-value=2.4e+02 Score=26.47 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=39.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 199 FNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMK---DKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 199 FNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk---~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
|++.|=+-+|..+... |++++ .|.|-.-+ -|+...+.+..+...+...+ .++++-+++...-..+..+++.++
T Consensus 2 LQeQLLKAGLv~~kka--kka~~-~k~k~~k~-~~~~~~~~~~~~k~~a~~a~~ek~erdr~Ln~qr~~~~~~K~~~Aqi 77 (177)
T PF09831_consen 2 LQEQLLKAGLVDKKKA--KKAKK-EKRKQRKQ-KRKGGQEEVDEAKAAAERARAEKAERDRELNRQRQAEAERKEIQAQI 77 (177)
T ss_pred hHHHHHHccCccHHHH--HHHHH-HHHHHHHh-cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677666552 33332 22111111 12222333444444443333 344444444444555556666666
Q ss_pred HHHHHHHhhhccCCCCC
Q psy14684 276 SQLYKHVFNALRDSDGN 292 (357)
Q Consensus 276 ~~L~q~Vf~~LrD~~G~ 292 (357)
.+|... ..+...+|.
T Consensus 78 kQlI~~--~~i~~~~gd 92 (177)
T PF09831_consen 78 KQLIEQ--NRIPREDGD 92 (177)
T ss_pred HHHHHH--cCCCCCCCc
Confidence 655533 245555554
No 301
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=47.64 E-value=73 Score=36.05 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLSLIRDIR 220 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~lIRdIR 220 (357)
+.=+.|+..+.||+.|...|=++|
T Consensus 404 ~a~~~L~~~f~lse~Qa~aIl~mr 427 (804)
T COG0188 404 EAKEELMARFGLSEKQAEAILDLR 427 (804)
T ss_pred HHHHHHHHHcCCcHHHHHHHHhhh
Confidence 344578888999999999887776
No 302
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=47.61 E-value=87 Score=28.38 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+.|..|+..++.|..-.++|..++.+|...+..+.+.+..+.+.
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666544
No 303
>PHA02557 22 prohead core protein; Provisional
Probab=47.58 E-value=96 Score=31.02 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhccchH----------HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLIRDIRRRGKNKV----------AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lIRdIRRRgKNRv----------AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
|+.|-..+-.--|.+-+++..+.|+...==-. ..-.|.--+.|.|..|+++++....+...|..|+..|.
T Consensus 89 vd~~l~~~~~eW~~ENk~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~ 168 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALE 168 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666678888888887765432111 23468999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q psy14684 266 QECSRVKSQ 274 (357)
Q Consensus 266 ~e~~~LKqk 274 (357)
..+..++..
T Consensus 169 e~i~~~~r~ 177 (271)
T PHA02557 169 EYINEVKRE 177 (271)
T ss_pred HHHHHHHHH
Confidence 888777653
No 304
>PRK05560 DNA gyrase subunit A; Validated
Probab=47.54 E-value=1.3e+02 Score=33.65 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=14.1
Q ss_pred CcccceeecCCCcEEEEec
Q psy14684 296 PFEFSLEQTNDGNVELVRR 314 (357)
Q Consensus 296 P~ey~Lq~~~dG~V~lVPr 314 (357)
-++..+-.+.+|-|--+|-
T Consensus 497 ~E~v~vllS~~GyIKri~~ 515 (805)
T PRK05560 497 EEDVVVTLTHGGYIKRTPL 515 (805)
T ss_pred CCCEEEEEeCCCEEEEcch
Confidence 4456677888998887775
No 305
>KOG2577|consensus
Probab=47.28 E-value=16 Score=37.52 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=29.9
Q ss_pred HHHHHHhccchHHHHhhhhh----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 216 IRDIRRRGKNKVAAQNCRKR----KLDQILSLADEVKQMKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 216 IRdIRRRgKNRvAAQnCRKR----KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~ 268 (357)
|--|.++.||-|=|-.|-.- -.+++..|+.|++.|..+-+.|-+-+..+...+
T Consensus 118 I~LIeKksKN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L 174 (354)
T KOG2577|consen 118 IGLIEKKSKNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNL 174 (354)
T ss_pred ccceeeccccceeeecCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688999999988765433 334444455555555554444433333333333
No 306
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=47.10 E-value=18 Score=38.49 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
++++.|+ +.|.|++|+++|++++++|.+++.+.-+
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 4444444 6666666666666666666666555443
No 307
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.06 E-value=1.5e+02 Score=29.22 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=9.1
Q ss_pred hccchHH-HHhhhhhHHH
Q psy14684 222 RGKNKVA-AQNCRKRKLD 238 (357)
Q Consensus 222 RgKNRvA-AQnCRKRKLd 238 (357)
+.|+.++ ...|.+-++.
T Consensus 195 ~Lk~~~~e~~~~D~~eL~ 212 (325)
T PF08317_consen 195 NLKQLVEEIESCDQEELE 212 (325)
T ss_pred HHHHHHhhhhhcCHHHHH
Confidence 4444444 4557665554
No 308
>PHA01750 hypothetical protein
Probab=46.92 E-value=1.3e+02 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 251 KDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 251 k~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+.|...|..|++.+....+.+.+++..+.+.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455555555556666666666666555543
No 309
>smart00340 HALZ homeobox associated leucin zipper.
Probab=46.86 E-value=36 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
|+.--+.|..|+..|.+|+++|+
T Consensus 10 LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554
No 310
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.79 E-value=2.3e+02 Score=30.55 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=5.5
Q ss_pred hhhhhccccc
Q psy14684 37 KYHLYGRRLF 46 (357)
Q Consensus 37 k~~~~gkr~~ 46 (357)
.--|||++.+
T Consensus 49 ~~~LyG~~~~ 58 (650)
T TIGR03185 49 QLALYGKRAL 58 (650)
T ss_pred HHHhcCcccc
Confidence 3456776543
No 311
>KOG0627|consensus
Probab=46.65 E-value=47 Score=32.11 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhccc-hHHHHhhhhhHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 211 TQLSLIRDIRRRGKN-KVAAQNCRKRKL-----------DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 211 eQl~lIRdIRRRgKN-RvAAQnCRKRKL-----------d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.|..+|+.|+||--. +.-+..+...-. .....|+.++..|..+++.|..|..+|+.....++..+..+
T Consensus 95 g~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~~~~~ 174 (304)
T KOG0627|consen 95 GQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRATIQTS 174 (304)
T ss_pred ChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 467788888886521 111101111111 12345667777777777777777777776666666554433
Q ss_pred H
Q psy14684 279 Y 279 (357)
Q Consensus 279 ~ 279 (357)
-
T Consensus 175 ~ 175 (304)
T KOG0627|consen 175 K 175 (304)
T ss_pred c
Confidence 3
No 312
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.31 E-value=87 Score=28.30 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=24.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.+....++.|++.|+.|.++...|...|+++.+.+...
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666677777777777666777776666665543
No 313
>KOG3119|consensus
Probab=46.23 E-value=1.1e+02 Score=29.85 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=30.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
..++..||.|...|+.+.+.|++|+..|..-...+...
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34678889999999999999999988888777665544
No 314
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.16 E-value=53 Score=34.07 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=25.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+..||.-+..+++|+.+|+-..+.+.++..++.++-..|-++
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 3456666666677777666666666666665555555555333
No 315
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=45.96 E-value=65 Score=32.44 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+..|+..+..++.+.+.|+..+..|..+++.++.++..|...+-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888887776654
No 316
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=45.72 E-value=1.2e+02 Score=29.46 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhccCCCCCCC--CCcccceeecCCCcEEE
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF--SQLYKHVFNALRDSDGNPY--SPFEFSLEQTNDGNVEL 311 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl--~~L~q~Vf~~LrD~~G~P~--SP~ey~Lq~~~dG~V~l 311 (357)
-+++-..|..|.+++++|+.+-.....+.+... ......|. .|||| ....|.+.-.=|..||+
T Consensus 144 deDd~~~Ll~ELekIKkER~ee~~~~e~~~~~~~~~~~~~~~~------~~NpLl~~~~~~~~kr~W~ddvvF 210 (244)
T PF04889_consen 144 DEDDTAALLRELEKIKKERAEEKARKEEEKAEEEEKEREENIL------SGNPLLNASGDFKVKRRWDDDVVF 210 (244)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCcccCCCCCCccccCCcccccc
Confidence 345666788888888888866544444443222 22233343 68885 24566666555555555
No 317
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.68 E-value=1.7e+02 Score=24.17 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.-|..+.+.|..++.+|...++.|..++
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555554
No 318
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.65 E-value=2.4e+02 Score=26.16 Aligned_cols=12 Identities=33% Similarity=0.351 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q psy14684 260 EHEYLSQECSRV 271 (357)
Q Consensus 260 Er~~L~~e~~~L 271 (357)
++..|..++.+|
T Consensus 111 ~l~~l~~~~~~l 122 (188)
T PF03962_consen 111 ELEELKKELKEL 122 (188)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 319
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.60 E-value=1.3e+02 Score=24.76 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIRR 221 (357)
Q Consensus 207 ~LSeeQl~lIRdIRR 221 (357)
.++++++..|+.|+.
T Consensus 38 ~Y~~~~l~~l~~I~~ 52 (102)
T cd04789 38 LYPDSDLQRLLLIQQ 52 (102)
T ss_pred eCCHHHHHHHHHHHH
Confidence 356666666665553
No 320
>KOG4848|consensus
Probab=45.48 E-value=3e+02 Score=26.80 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+|||..- .++.++++.+| .+||+--..--.|...++.+++.+++.+-+-+-++...+..-..+.+.-.++++
T Consensus 99 rE~~~~~------~e~~e~l~km~--EslRi~~~~e~~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~e 170 (225)
T KOG4848|consen 99 REFNNAK------KEYKELLKKMR--ESLRILYTKEPEKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLE 170 (225)
T ss_pred HHHHHHH------HHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHH
Confidence 6777653 35677776664 456654444444455888999999999999888888888888888888888888
Q ss_pred HHHHHHhhhcc
Q psy14684 277 QLYKHVFNALR 287 (357)
Q Consensus 277 ~L~q~Vf~~Lr 287 (357)
.|..+|-..+.
T Consensus 171 rli~eiqe~fG 181 (225)
T KOG4848|consen 171 RLIREIQEYFG 181 (225)
T ss_pred HHHHHHHHHhC
Confidence 88888776654
No 321
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.41 E-value=4.1e+02 Score=28.42 Aligned_cols=95 Identities=20% Similarity=0.387 Sum_probs=54.2
Q ss_pred hhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhcc----c------------hHHHHhhhhhHH--------HHHHhHH
Q psy14684 189 NDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGK----N------------KVAAQNCRKRKL--------DQILSLA 244 (357)
Q Consensus 189 deIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgK----N------------RvAAQnCRKRKL--------d~I~~LE 244 (357)
.+|.++||.+=-.-+++..||-+-+.....+|..=- + --++.+-|.+|. +.|..+|
T Consensus 35 ~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e 114 (560)
T PF06160_consen 35 NELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIE 114 (560)
T ss_pred HHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 455666665544444555566655555555543211 0 012333333332 3455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.++..+..+.+.|..--..-+.++.+|+.+|..|-+.+.
T Consensus 115 ~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 115 EDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666667778888888888877766
No 322
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=45.25 E-value=1.4e+02 Score=26.23 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=9.9
Q ss_pred HHHhcCCCCHHHH
Q psy14684 201 ERLSKYDLSETQL 213 (357)
Q Consensus 201 elLs~~~LSeeQl 213 (357)
+|.++..||.+|-
T Consensus 32 elVkkGeln~eEa 44 (108)
T COG3937 32 ELVKKGELNAEEA 44 (108)
T ss_pred HHHHcCCCCHHHH
Confidence 5677888888874
No 323
>PRK11020 hypothetical protein; Provisional
Probab=45.23 E-value=1.4e+02 Score=26.60 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=25.4
Q ss_pred cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy14684 224 KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEH-EYLSQECSRV 271 (357)
Q Consensus 224 KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr-~~L~~e~~~L 271 (357)
+.|.||..-|.- .+.|..+++|++.|..+.++|+..+ ..|.+|...|
T Consensus 18 ~~Klaaa~~rgd-~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l 65 (118)
T PRK11020 18 RHKLAAASLRGD-AEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65 (118)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666654 3455566666666666666655443 3344444333
No 324
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=45.21 E-value=1e+02 Score=27.54 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=50.3
Q ss_pred HHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhc--cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Q psy14684 180 RALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRG--KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHL 257 (357)
Q Consensus 180 ~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRg--KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL 257 (357)
+..++||.-|.|..--.-=. .||..|-+++|+= ++...+ .-+..=...+.+++..+.....-..+|
T Consensus 32 Q~Ah~PyDpd~I~aAD~~vV-----------sEL~~Ls~LK~~y~~~~~~~~-~~~~~l~a~~~e~qsli~~yE~~~~kL 99 (131)
T PF04859_consen 32 QQAHSPYDPDKIQAADEAVV-----------SELRRLSELKRRYRKKQSDPS-PQVARLAAEIQEQQSLIKTYEIVVKKL 99 (131)
T ss_pred HHhcCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCCCCCC-ccccccccchHHHHHHHHHHHHHHHHH
Confidence 45688999998875432221 2233333344422 222222 111123445666666666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 258 MQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 258 ~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+.|+..=..|+..||.+|..+..
T Consensus 100 e~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 100 EAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776654
No 325
>PHA03065 Hypothetical protein; Provisional
Probab=45.15 E-value=61 Score=34.27 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=29.8
Q ss_pred hHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 226 KVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 226 RvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
|-|-++|=+||.+.|..|++.++.|-..-+--..-+..+...+++++-
T Consensus 89 r~a~~~~~kRK~~ei~~l~~~i~~ld~~d~~yEEikt~~~lrI~Kl~F 136 (438)
T PHA03065 89 RKASKNTIKRKREEIEKLEDDIKNLDVDDEMYEEIKTDLELKIDKLSF 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999998875443333222222344444444443
No 326
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=45.05 E-value=50 Score=27.93 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=13.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
+..++.++..|+.++.+|..|++-|++.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554444444333
No 327
>KOG1760|consensus
Probab=44.65 E-value=94 Score=28.06 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRD 288 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD 288 (357)
...|...++.|.+++..|..++..+..++..|....+....|
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgd 124 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFGD 124 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345777888888888888888888888888888777777665
No 328
>KOG1656|consensus
Probab=44.63 E-value=2.1e+02 Score=27.87 Aligned_cols=22 Identities=36% Similarity=0.178 Sum_probs=16.7
Q ss_pred hccchHHHHhhhhhHHHHHHhH
Q psy14684 222 RGKNKVAAQNCRKRKLDQILSL 243 (357)
Q Consensus 222 RgKNRvAAQnCRKRKLd~I~~L 243 (357)
+-|||.+|-.|=|||...-..|
T Consensus 56 ~tkNKR~AlqaLkrKK~~E~qL 77 (221)
T KOG1656|consen 56 GTKNKRMALQALKRKKRYEKQL 77 (221)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 4589999999999987643333
No 329
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.56 E-value=1.1e+02 Score=24.38 Aligned_cols=43 Identities=12% Similarity=0.365 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
+-+..|..+.+.|..++..|...+..+..++..+...+...+.
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466688899999999999999999999999888877665544
No 330
>PF15058 Speriolin_N: Speriolin N terminus
Probab=44.53 E-value=58 Score=31.22 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
..+.|+.++++|.+|+++|++...-||+.- +|.+-
T Consensus 6 ~yeGlrhqierLv~ENeeLKKlVrLirEN~-eLksa 40 (200)
T PF15058_consen 6 NYEGLRHQIERLVRENEELKKLVRLIRENH-ELKSA 40 (200)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHH
Confidence 346789999999999999999999999884 35544
No 331
>PRK10404 hypothetical protein; Provisional
Probab=44.32 E-value=83 Score=26.69 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=26.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHE-YLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~-~L~~e~~~LKqkl~~L~q~V 282 (357)
....|++++..|....+.|+++.. ....+..+||.+++.....+
T Consensus 6 ~~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~a 50 (101)
T PRK10404 6 GDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDV 50 (101)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888776652 33444555555554444333
No 332
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=44.31 E-value=77 Score=26.63 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+..++.++++|..|+++|..|......++.
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888888888888888777777765
No 333
>KOG0161|consensus
Probab=44.26 E-value=1.6e+02 Score=36.69 Aligned_cols=84 Identities=19% Similarity=0.333 Sum_probs=56.3
Q ss_pred hcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 192 INLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLD-QILSLADEVKQMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 192 VnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd-~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
.+.-+++|+..|.+ =+.++.-+...=-...+-++---|-.+.+. +|.+|+++++..+..+.++.+.+..|..++..
T Consensus 1060 ~~~~~~el~~~l~k---ke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKK---KESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46668888888877 333333332211122333344445555555 48888888888888888888888888888888
Q ss_pred HHHHHHHH
Q psy14684 271 VKSQFSQL 278 (357)
Q Consensus 271 LKqkl~~L 278 (357)
|+.+|...
T Consensus 1137 l~~~Lee~ 1144 (1930)
T KOG0161|consen 1137 LKEELEEQ 1144 (1930)
T ss_pred HHHHHHHH
Confidence 88888655
No 334
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.11 E-value=1.1e+02 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
.++..+..-..++..|..|+..|..++.+++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444443
No 335
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=44.08 E-value=53 Score=36.64 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
|......|....+.|..|+..|+.++.++|.+=
T Consensus 60 l~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE 92 (717)
T PF09730_consen 60 LSQLNQELRKECEDLELERKRLREEIKEYKFRE 92 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445555555555555443
No 336
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.00 E-value=2e+02 Score=30.09 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
....+..++..|..+...|..++.++.+++.+|+.+|..|-.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 132 AFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344556777778888888888888888888888888887764
No 337
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=43.87 E-value=71 Score=28.14 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
|..|++....|+.+..++.+++..++..+...
T Consensus 109 L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 109 LEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555543
No 338
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=43.82 E-value=75 Score=26.37 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=20.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.++..||.|.+.|-+..+.+.+++.=....+..+.++.
T Consensus 7 k~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq 44 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQ 44 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555665555555555555555555544444444443
No 339
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=43.66 E-value=89 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=14.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
|..|...+..|..||..|.-|+..|+..+.
T Consensus 24 l~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 24 LGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 344444444455555555555544444433
No 340
>PHA03158 hypothetical protein; Provisional
Probab=43.66 E-value=62 Score=31.51 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHH
Q psy14684 208 LSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKD 252 (357)
Q Consensus 208 LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~ 252 (357)
+|.+|.+.|++-= --||.+|++- .+++.+||+|+++|+.
T Consensus 230 ~t~~EK~~~~kQl-----lka~kkc~~~-s~~~~~leeei~elek 268 (273)
T PHA03158 230 KTAKEKAAILKQL-----LKAAKKCCKN-SEHEKELEEEIEELEK 268 (273)
T ss_pred ecHHHhHHHHHHH-----HHHHHHHhcc-hHHHHHHHHHHHHHHH
Confidence 7888877764332 3478889876 5777888888877654
No 341
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=43.66 E-value=1.6e+02 Score=23.09 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+..|..+|.+|..+...|..++.....|....-++|-..
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455777888888888888877777777777777766543
No 342
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=43.63 E-value=1.5e+02 Score=33.96 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIR 220 (357)
Q Consensus 207 ~LSeeQl~lIRdIR 220 (357)
.||++|...|=+||
T Consensus 405 ~lte~qa~aIlemr 418 (869)
T PRK12758 405 EVTEDDIVRLTEIK 418 (869)
T ss_pred CCCHHHHHHHHHhH
Confidence 37777777776665
No 343
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.61 E-value=3e+02 Score=26.28 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKR 255 (357)
Q Consensus 243 LEdEV~~Lk~Eke 255 (357)
|+.++..|+.++.
T Consensus 228 l~~el~~l~~~~~ 240 (312)
T PF00038_consen 228 LQAELESLRAKNA 240 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhccccchh
Confidence 3333333333333
No 344
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=43.56 E-value=1.7e+02 Score=26.78 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=30.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFN 284 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~ 284 (357)
+..-..+..+|..|+.+.+.|...+..+.+++..++..|..+...-..
T Consensus 21 l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~ 68 (188)
T PF10018_consen 21 LQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADE 68 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455566666677777777766777777777777777666633333
No 345
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.46 E-value=64 Score=38.06 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=35.4
Q ss_pred HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 227 VAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 227 vAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+++.++|.| ..+|.+|+.++..|..+...|..++..|...+..|.+.+.
T Consensus 732 G~~aR~~~R-~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 732 GAAARERAR-LRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655 6778888888888888888777777777776666666543
No 346
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=43.43 E-value=61 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
|+.++..|+.|++.|+-+++-|-+.|.
T Consensus 77 lkkk~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555554444443
No 347
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=43.22 E-value=1.1e+02 Score=30.95 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNP 293 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P 293 (357)
|.|..||-|+..-..|-++|...+..|+.+...+++++.. .+++..-||.+-..|
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~-~~~~~eglrep~kkp 118 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIRE-MREIIEGLREPVKKP 118 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcCC
Confidence 5666777777665555555555555555555555555543 334444555444333
No 348
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.18 E-value=3.7e+02 Score=28.67 Aligned_cols=46 Identities=15% Similarity=0.355 Sum_probs=35.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.|...|.++..+..+.+.|+.--..-+.++.+++.+|..|-+.|.
T Consensus 112 ~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll 157 (569)
T PRK04778 112 SLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL 157 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777778888899999888887776
No 349
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=43.14 E-value=50 Score=27.29 Aligned_cols=62 Identities=8% Similarity=0.029 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 207 ~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+|++++..|+.|+.=.|+ ..=.++.|..+-.....-..+.+.+..+..++..++..||++|
T Consensus 38 ~Yt~~di~~l~~I~~llr~-------~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (99)
T cd04765 38 YYRPKDVELLLLIKHLLYE-------KGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLDLRDQL 99 (99)
T ss_pred eeCHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcC
Confidence 4889999999888752221 1112444444443333333455666677777777777777653
No 350
>KOG3335|consensus
Probab=42.94 E-value=30 Score=32.64 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=18.7
Q ss_pred cchHHHHHHHcCC-----CCChhhHhcCCHHHHHHHH
Q psy14684 172 MTRDEKKARALNI-----PIPVNDIINLPMDEFNERL 203 (357)
Q Consensus 172 ~SRDE~RA~al~I-----PFSvdeIVnLPV~EFNelL 203 (357)
-+|--.||.-++- |++++.-|.+-.|=+-++.
T Consensus 41 ~~r~kmr~lg~g~~v~i~PLnEa~Ave~gadlLgE~~ 77 (181)
T KOG3335|consen 41 TVRLKMRALGLGGPVVIRPLNEAAAVEAGADLLGELF 77 (181)
T ss_pred HHHHHHHHhcCCCCcccCCCCHHHHHHHHHHHHhhHH
Confidence 3444455554443 6777777777666666654
No 351
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=42.80 E-value=87 Score=26.26 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+.-|+..++.|....++|..++..+..++..+.+.+
T Consensus 87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 87 AIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555444443
No 352
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=42.71 E-value=71 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+..|+.+.+.|..++..+..+++.++.++.
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 353
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=42.63 E-value=78 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
.|..+|.|++.|.=.|++|.+.+..|..+++
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544444
No 354
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=42.37 E-value=1.4e+02 Score=27.70 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
-|+.+++.|..|...+..++.++++.+..+++..+..+
T Consensus 29 lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l 66 (204)
T PRK00373 29 LLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDF 66 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777777777665554443
No 355
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=42.36 E-value=83 Score=23.21 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 251 KDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 251 k~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+...+.|..++..|..++..|++++..|-
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555556666666666655554
No 356
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.33 E-value=75 Score=26.26 Aligned_cols=37 Identities=8% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+..|..+.+.|..++..+...+..+..++..|...+.
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555444443
No 357
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=42.32 E-value=2.4e+02 Score=26.02 Aligned_cols=70 Identities=21% Similarity=0.371 Sum_probs=34.0
Q ss_pred HcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14684 181 ALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 181 al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kE 260 (357)
.+.||||- +..=.+.++-..+++ +.|+=...||.|||.+.+++-... |.+ .--||++..+..+.++|..+
T Consensus 88 ~Iri~iP~--lT~E~RkelvK~~k~--~~E~aKv~iRniRr~~~~~iKk~~--k~~----~iseD~~k~~~~~iQkltd~ 157 (176)
T TIGR00496 88 VIRVNFPP--LTEERRKELVKHAKK--IAEQAKVAVRNVRRDANDKVKKLE--KDK----EISEDEERRLQEEIQKLTDE 157 (176)
T ss_pred EEEecCCC--CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh--hcC----CCChhHHHHHHHHHHHHHHH
Confidence 35566652 222223455555555 555556666777766655543211 100 01255666566665555543
No 358
>KOG1029|consensus
Probab=42.30 E-value=1.4e+02 Score=34.27 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=32.5
Q ss_pred hccchHHHHhh-----------hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 222 RGKNKVAAQNC-----------RKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 222 RgKNRvAAQnC-----------RKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
+.||+.+|-.- |..|-..+..|++.++.|..|.+.-+.|+.-+...+.+||.-
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45666666432 233344556677777777777777777766666666666653
No 359
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=42.15 E-value=73 Score=26.91 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
..+..++.++.+|.+++.+|..|++-||...
T Consensus 71 ~~~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 71 SELAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688888889999999998888888776
No 360
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.00 E-value=81 Score=31.27 Aligned_cols=7 Identities=43% Similarity=0.809 Sum_probs=4.4
Q ss_pred HcCCCCC
Q psy14684 181 ALNIPIP 187 (357)
Q Consensus 181 al~IPFS 187 (357)
.|+||+-
T Consensus 91 RmK~PiG 97 (290)
T COG4026 91 RMKIPIG 97 (290)
T ss_pred eeccCCC
Confidence 4677764
No 361
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=41.98 E-value=61 Score=26.37 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=21.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
.+..|+++++.|+.++..+..++..+..++.-|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666666666666665544
No 362
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=41.87 E-value=1.8e+02 Score=33.64 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14684 255 RHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 255 ekL~kEr~~L~~e~~~LKq 273 (357)
++|..++..+..++..++.
T Consensus 824 ~~~~~ei~~l~~~~~~~~~ 842 (1163)
T COG1196 824 ERLEQEIEELEEEIEELEE 842 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 363
>PF14282 FlxA: FlxA-like protein
Probab=41.80 E-value=1.1e+02 Score=25.87 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 259 QEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 259 kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
..+..|..++..|..+|..|....-
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665543
No 364
>KOG2011|consensus
Probab=41.78 E-value=1.5e+02 Score=34.64 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=69.0
Q ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHH--------------HHHHHHH
Q psy14684 195 PMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDK--------------KRHLMQE 260 (357)
Q Consensus 195 PV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~E--------------kekL~kE 260 (357)
.++++-.+|.+ ||..|+-.+|.+- =++|-+=....++...+|.........+ .+.|+.-
T Consensus 197 lmd~~is~Lta--mSdSqvR~fRhTa-----Tl~~mklmt~Lv~va~~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~ 269 (1048)
T KOG2011|consen 197 LMDDLISWLTA--MSDSQVRAFRHTA-----TLAAMKLMTALVSVALNLSSHNDKTSKQLEAERNKSRGNRARLESLLML 269 (1048)
T ss_pred hHHHHHHHHHH--hccccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 47788888988 8999988886554 6888888888888888888744333333 5778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhccCC
Q psy14684 261 HEYLSQECSRVKSQFSQLYKHVF-NALRDS 289 (357)
Q Consensus 261 r~~L~~e~~~LKqkl~~L~q~Vf-~~LrD~ 289 (357)
+.++...++++...+..++..|| .+.||-
T Consensus 270 r~etqe~~d~i~~mi~~if~sVFVHRYRDV 299 (1048)
T KOG2011|consen 270 RKETQEQQDEIESMINDIFDSVFVHRYRDV 299 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeeecccC
Confidence 88899999999999999999999 467764
No 365
>KOG1962|consensus
Probab=41.69 E-value=63 Score=31.21 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy14684 264 LSQECSRVKSQFSQ 277 (357)
Q Consensus 264 L~~e~~~LKqkl~~ 277 (357)
+......|+.+.+.
T Consensus 177 ~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 177 AQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 366
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=41.63 E-value=2.4e+02 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=27.5
Q ss_pred HHHHHcCCCCChhhHhc----------CCHHHHHHHHhcCCCCHHHH
Q psy14684 177 KKARALNIPIPVNDIIN----------LPMDEFNERLSKYDLSETQL 213 (357)
Q Consensus 177 ~RA~al~IPFSvdeIVn----------LPV~EFNelLs~~~LSeeQl 213 (357)
+-|+.++|-+|.++|-. ++.++|.+.|...++|.+++
T Consensus 64 q~A~~~gi~vsd~ev~~~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 110 (413)
T PRK10770 64 QMAQKMGVKISDEQLDQAIANIAAQNNMTLDQMRSRLAYDGLNYNTY 110 (413)
T ss_pred HHHHHcCCCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCHHHH
Confidence 46888999999999854 56677777777777776543
No 367
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.35 E-value=1.1e+02 Score=29.69 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+-+-..+.+|..|..++..++..|+.|++.|+.-=-+||..|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666666665544566554
No 368
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=40.93 E-value=4.1e+02 Score=28.17 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=18.3
Q ss_pred cCCCCHHHHHHHHHHHHhccch----HHHHhhhhhH
Q psy14684 205 KYDLSETQLSLIRDIRRRGKNK----VAAQNCRKRK 236 (357)
Q Consensus 205 ~~~LSeeQl~lIRdIRRRgKNR----vAAQnCRKRK 236 (357)
.|.|+++=.+..+.-||+-++| .++-+.|.|+
T Consensus 276 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (429)
T PRK00247 276 KYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRN 311 (429)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778877666665555544433 3555555544
No 369
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.84 E-value=3.1e+02 Score=25.61 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+..|+.++..++...++|...+..|...+.+++.+-.
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555433
No 370
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=40.74 E-value=1.6e+02 Score=26.40 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 261 HEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 261 r~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+..+..+++.|...|..|-++++
T Consensus 62 l~~l~~~l~~l~~eL~~Lr~~~l 84 (126)
T PF07028_consen 62 LKELKQELDVLSKELQALRKEYL 84 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 371
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=40.72 E-value=1.2e+02 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=0.4
Q ss_pred HhcCCHHHHHHHHhcCCCCHHHH
Q psy14684 191 IINLPMDEFNERLSKYDLSETQL 213 (357)
Q Consensus 191 IVnLPV~EFNelLs~~~LSeeQl 213 (357)
+|-.|+--|.+|.++-.+=++++
T Consensus 24 ~~Pv~i~GF~dL~~R~~~Q~~~~ 46 (141)
T PF13874_consen 24 LIPVPIIGFEDLKKRVEAQEEEI 46 (141)
T ss_dssp ----------------------H
T ss_pred eeeehhhhHHHHHHHHHHHHHHH
Confidence 66667888888888833333333
No 372
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=40.68 E-value=55 Score=34.93 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=33.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+.+|..++.+|..+|++|..-..+.+.++..|+.+|..|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p 44 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQP 44 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356777888888888888888888888888888888877654
No 373
>KOG4343|consensus
Probab=40.61 E-value=45 Score=36.47 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
|..|+.|-++|+.|+-.|++.+..|..|...+
T Consensus 311 Lq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 311 LQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 45555555556666666666555555554443
No 374
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=40.26 E-value=3e+02 Score=25.27 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcc
Q psy14684 202 RLSKYDLSETQLSLIRDIRRRGK 224 (357)
Q Consensus 202 lLs~~~LSeeQl~lIRdIRRRgK 224 (357)
++...+||++|...|++|+....
T Consensus 52 ~~~~l~lT~~Qrqqi~~i~~~~~ 74 (160)
T COG3678 52 MFKGLDLTRAQRQQIRDLMQAQR 74 (160)
T ss_pred ccccccccHHHHHHHHHHHHHHH
Confidence 44567799999999999987655
No 375
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=40.19 E-value=85 Score=31.26 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=27.8
Q ss_pred hHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy14684 235 RKLDQILSLADEV-KQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGN 292 (357)
Q Consensus 235 RKLd~I~~LEdEV-~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~ 292 (357)
||++---.|.++- ..+..|+.+|.++...|..+++.|++.++.- |-.++|-+|.
T Consensus 203 rrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~----~l~~~Dm~G~ 257 (289)
T COG4985 203 RRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELERQ----FLYLVDMQGE 257 (289)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc----eEEEEccCCC
Confidence 3343333344333 2255566666666666666666666555421 2246666665
No 376
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=40.04 E-value=44 Score=35.04 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
+.++++..+.++.+++++++..+..+++..|..|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~Gsl 396 (448)
T PF05761_consen 363 SSSELRPDISELRKERRELRREMKELFNPQFGSL 396 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-TTT-BS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence 5667888888999999999999999998777654
No 377
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.98 E-value=1.2e+02 Score=31.18 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+..+......|..+..+|..++.+|+..+..+
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444445555555555544443
No 378
>PHA01750 hypothetical protein
Probab=39.87 E-value=55 Score=26.77 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
...|++.|+.|.+.+...+..|.+.+.+++.++..
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 35678888888888888888899999888888753
No 379
>PF14282 FlxA: FlxA-like protein
Probab=39.69 E-value=1.1e+02 Score=25.85 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14684 268 CSRVKSQFSQLYKHVF 283 (357)
Q Consensus 268 ~~~LKqkl~~L~q~Vf 283 (357)
+..|..++..|...|.
T Consensus 53 ~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 380
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=39.68 E-value=1.6e+02 Score=26.92 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
=..-|+.+++-|..|...+..+..+++..+..++..++..|
T Consensus 16 g~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l 56 (196)
T PF01813_consen 16 GHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSL 56 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447777777777777888888888888777777776554
No 381
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.53 E-value=92 Score=33.93 Aligned_cols=49 Identities=24% Similarity=0.349 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDG 291 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G 291 (357)
.++.+++.|..+..++..|+.+...+..++.+.+. +...++..|.|++.
T Consensus 346 ~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ 394 (594)
T PF05667_consen 346 ELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEE 394 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHH
Confidence 33344444444444444444444444445544543 45555555666554
No 382
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=39.51 E-value=66 Score=24.87 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLM-QEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~-kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.++.+.+|..|...+- .++..+...+..+|..|..|.++
T Consensus 37 a~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 37 AEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443333332 45556666666666666665543
No 383
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.43 E-value=1.5e+02 Score=26.12 Aligned_cols=43 Identities=5% Similarity=-0.033 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFN 284 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~ 284 (357)
.....+..|+.+..+.....+.-...+.+|+..+..+-..+=.
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666666666666554443
No 384
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=39.27 E-value=1.8e+02 Score=26.59 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 251 KDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 251 k~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+.++..|...+..|..+...|..++.
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444433
No 385
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=39.20 E-value=76 Score=31.03 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=17.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHE----YLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~----~L~~e~~~LKqkl 275 (357)
...+|+.|-++|+.|+.+|..+.. +|++|+++||+-|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555444432222 2455555555544
No 386
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.09 E-value=2e+02 Score=25.58 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=21.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+|+.|.+.+++..+-.+....|+..+...+..++..+..+...|
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555555555444444444555555555555555544444333
No 387
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=39.08 E-value=58 Score=26.84 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 256 HLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 256 kL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
.|.+|+.+|+.++++|+..|+.+.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555566666655555555443
No 388
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=38.93 E-value=1.1e+02 Score=33.21 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=35.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
-+.=||++|+++-.+.+.|+.++..+.+.+.+++..|..+-.+
T Consensus 364 I~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 364 INKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556888999999999999999999999988888888766544
No 389
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=38.82 E-value=1.1e+02 Score=25.67 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
.||+|+..|....+...+|...|.++
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 34455555555555444444444444
No 390
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=38.73 E-value=97 Score=23.93 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMK-DKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk-~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.|..+|-|+..+. ..+..+...+...+.+++.|+..|
T Consensus 40 ~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 40 LLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555544 455555555555555555555554
No 391
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.69 E-value=95 Score=31.86 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
......+|......|..++.+|+.++..|...+...
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777888888888888888888887776644
No 392
>KOG2189|consensus
Probab=38.49 E-value=97 Score=35.18 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=53.6
Q ss_pred hhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHH----HHHh---------------HHHHHH
Q psy14684 188 VNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLD----QILS---------------LADEVK 248 (357)
Q Consensus 188 vdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd----~I~~---------------LEdEV~ 248 (357)
+-+|-.+..=.|..|=.. .|.-|..++++|||=..= -||+. .|.. .-.++.
T Consensus 26 vaeLGelGlvqFrDLN~~--v~afQR~fv~evrRcdem--------eRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~ 95 (829)
T KOG2189|consen 26 VAELGELGLVQFRDLNPD--VSAFQRKFVNEVRRCDEM--------ERKLRFLESEIKKAGIPLPDLDESPPAPPPREII 95 (829)
T ss_pred HHHhhccCeeEeeeCCCc--cCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCCCCCccccCCCCCchHHH
Confidence 344555555555555333 888999999999974320 01111 0100 135666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+|+.+.++|..|..++....++|+.++.+|...
T Consensus 96 dle~~l~klE~el~eln~n~~~L~~n~~eL~E~ 128 (829)
T KOG2189|consen 96 DLEEQLEKLESELRELNANKEALKANYNELLEL 128 (829)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 788888888888888888888888888776543
No 393
>KOG1853|consensus
Probab=38.23 E-value=3.5e+02 Score=27.47 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccceeecCCCcEEEEecCCCCCCCCCCCCCCCcCC
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVELVRRQPPHLASQGHPSTSSKDN 332 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP~ey~Lq~~~dG~V~lVPr~~~~~~~~~~~~~~~~~~ 332 (357)
|++.|+.+++.|+.|...|+|.|.--.++ .+--+.+-|. +|.|-.-.+.|--|-.-|+-...|-+++.-+--
T Consensus 158 Eke~llesvqRLkdEardlrqelavr~kq------~E~pR~~~Ps--s~~~er~dtavqa~~slP~tP~~~gs~~~f~~p 229 (333)
T KOG1853|consen 158 EKEVLLESVQRLKDEARDLRQELAVRTKQ------TERPRIVEPS--SVEAERTDTAVQAPESLPDTPSPGGSKEEFKMP 229 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCcCCcc--chhhhhcchhhcCcccCCCCCCCCCchhhcCCC
Confidence 45556666666666666666665421110 0111112232 466655555555555555555556677777766
Q ss_pred CCCCCC
Q psy14684 333 STLDNN 338 (357)
Q Consensus 333 ~~~~~~ 338 (357)
+++|+.
T Consensus 230 r~~d~~ 235 (333)
T KOG1853|consen 230 RSEDVF 235 (333)
T ss_pred cccccc
Confidence 777764
No 394
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=38.19 E-value=1.2e+02 Score=27.85 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+..++.++..|+.+.+.+......|...+.+|+.++..+...
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666666666665544
No 395
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=38.17 E-value=29 Score=37.03 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
++++|+.|.++|++++..|...+++.+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhh
Confidence 334444444444444444444443333
No 396
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=38.14 E-value=1e+02 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=14.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
.+..|+.+...|+.|+++|+-|+..|.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555555555555555555555544
No 397
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=38.08 E-value=1.6e+02 Score=27.71 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 232 CRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 232 CRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+.||..+.. ...++..|..+-..|...+-++...+..|+.++..|.+.
T Consensus 163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 398
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=38.03 E-value=95 Score=27.36 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
+|..|+.|.+....++....+|...|...++.+
T Consensus 105 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 105 RIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666555555544
No 399
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.97 E-value=1.2e+02 Score=30.48 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+|+.|.+.+..|....-.|.+|..+..+++..+|..+..|..+
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 400
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.68 E-value=1e+02 Score=29.35 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=13.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
|..|+++...|..+.+.|++...+|..+...|+.+
T Consensus 104 i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 104 IETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 33333333333333333333333333333333333
No 401
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=37.57 E-value=86 Score=31.50 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=46.1
Q ss_pred CCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14684 183 NIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHE 262 (357)
Q Consensus 183 ~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~ 262 (357)
....|-+++.+|+++|+..+-.+ + +.+|.+-=+|+..+.+|++.|..|+.
T Consensus 208 ~~~~SrEeL~~Mt~~EL~qL~~~----------L--------------------~~qIq~vfeeLt~~vQEKDsLaSElh 257 (285)
T PF06937_consen 208 HPHYSREELNSMTLDELKQLNEK----------L--------------------LQQIQDVFEELTQQVQEKDSLASELH 257 (285)
T ss_pred ccccCHHHhhhCCHHHHHHHHHH----------H--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999998776543 1 34566667788888888888888876
Q ss_pred HHHHHHHHHHHHHH
Q psy14684 263 YLSQECSRVKSQFS 276 (357)
Q Consensus 263 ~L~~e~~~LKqkl~ 276 (357)
----.|.+|-....
T Consensus 258 VRHVaIEQLlKn~s 271 (285)
T PF06937_consen 258 VRHVAIEQLLKNCS 271 (285)
T ss_pred HHHHHHHHHHHhhc
Confidence 65555555554443
No 402
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=37.57 E-value=1.6e+02 Score=24.04 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=38.5
Q ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHH
Q psy14684 195 PMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADE 246 (357)
Q Consensus 195 PV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdE 246 (357)
.|.||.+|-...-||++|+..|-..|+.-=.++.+..+.+. |-+.=.+-|
T Consensus 4 ~vpele~l~~~~lFt~~EI~~IvkkR~~fEy~L~rr~~~~~--Dfl~YI~yE 53 (83)
T PF08640_consen 4 MVPELEDLERKGLFTKEEIREIVKKRRDFEYKLQRRGKKKS--DFLRYIEYE 53 (83)
T ss_pred hhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHH
Confidence 37899999999999999999998777777777777776665 555444433
No 403
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=37.50 E-value=1.1e+02 Score=25.73 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=10.3
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHL 257 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL 257 (357)
.|+.||+.+.+++...+..
T Consensus 6 eId~lEekl~~cr~~le~v 24 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAV 24 (85)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 4566666665555444433
No 404
>KOG1103|consensus
Probab=37.47 E-value=1e+02 Score=32.49 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=32.0
Q ss_pred HHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 219 IRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 219 IRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.-|..|----|..-|+|-|+.-...|..+..+.-|++.|..|++.+...-..||.....|.
T Consensus 219 ksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLk 279 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLK 279 (561)
T ss_pred ccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555667766655555555555555555555555555444444554444443
No 405
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=37.43 E-value=1.2e+02 Score=29.09 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.++..+....++|+..+..|...+.+++.+...|
T Consensus 106 ~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 106 AELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555555554433
No 406
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.29 E-value=2.3e+02 Score=33.31 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=14.4
Q ss_pred CCCCChhhHhcCCHHHHHHHHhc
Q psy14684 183 NIPIPVNDIINLPMDEFNERLSK 205 (357)
Q Consensus 183 ~IPFSvdeIVnLPV~EFNelLs~ 205 (357)
.-+|+.++-++-=+.++..++..
T Consensus 684 ~R~f~~eee~~~f~~~L~~~~~~ 706 (1311)
T TIGR00606 684 QRVFQTEAELQEFISDLQSKLRL 706 (1311)
T ss_pred CCCCCChhHHHHHHHHHHHHHhc
Confidence 34777777754445666666666
No 407
>KOG0250|consensus
Probab=37.18 E-value=1.7e+02 Score=34.36 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=8.0
Q ss_pred HHHHHHhHHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDK 253 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~E 253 (357)
....+..|+..|..++.+
T Consensus 370 ~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 408
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=37.12 E-value=1.9e+02 Score=24.88 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=33.6
Q ss_pred CCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 194 LPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 194 LPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
|..++||..|.+ | -|--+++.- |.+.+..|...+.....|-+.|..-.+.+.++...|.-
T Consensus 2 l~~ee~ed~Lnk--L---------------~npEl~~sE---rTeaLqqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~v 61 (97)
T PF11418_consen 2 LSLEEHEDILNK--L---------------GNPELTESE---RTEALQQLRESYTSFHSEYEDLTEALEKLTAEKEDLIV 61 (97)
T ss_dssp --HHHHHHHHHH--H---------------H-TTS-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--h---------------CCcccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 556777777776 2 233333332 24445555555555555555555555555555555544
Q ss_pred HHHHHHHH
Q psy14684 274 QFSQLYKH 281 (357)
Q Consensus 274 kl~~L~q~ 281 (357)
-=+.|+.+
T Consensus 62 sNskLFrQ 69 (97)
T PF11418_consen 62 SNSKLFRQ 69 (97)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 44455544
No 409
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.10 E-value=4e+02 Score=25.90 Aligned_cols=17 Identities=0% Similarity=0.116 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14684 262 EYLSQECSRVKSQFSQL 278 (357)
Q Consensus 262 ~~L~~e~~~LKqkl~~L 278 (357)
..+..++..++.++..+
T Consensus 249 ~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 249 TEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 410
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=37.07 E-value=97 Score=24.25 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.|-.+++.+-.+.-.|+.|+..+..++.++|..
T Consensus 3 ~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 3 ELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666666777777777777777765
No 411
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=36.81 E-value=1.5e+02 Score=26.57 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=34.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
..|.+|+.+++.+..|..+|..-+..+....+.||+-|......
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888887665543
No 412
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.69 E-value=1.1e+02 Score=32.22 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
..|..+...|..++..+..+.+++..++..+.
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554443
No 413
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=36.69 E-value=2.2e+02 Score=31.74 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
|+.++..|..|+..|+.++....+++..|-.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433333333333
No 414
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=36.65 E-value=3.2e+02 Score=30.40 Aligned_cols=7 Identities=14% Similarity=0.468 Sum_probs=2.9
Q ss_pred CcEEEEe
Q psy14684 307 GNVELVR 313 (357)
Q Consensus 307 G~V~lVP 313 (357)
|.+.++|
T Consensus 573 gr~tflp 579 (1164)
T TIGR02169 573 GRATFLP 579 (1164)
T ss_pred CCeeecc
Confidence 3344444
No 415
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.64 E-value=1.1e+02 Score=25.01 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 207 ~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L 264 (357)
.+|.+++..|+.|++=... ..=--..+..+..|.+++..|+++...|..|+..|
T Consensus 38 ~Ys~~dv~~l~~I~~L~~~----~G~~l~~i~~~l~l~~~~~~l~~~~~~~~~~~~~~ 91 (98)
T cd01279 38 RYSNNDLELLRQVQRLSQD----EGFNLAGIKRIIELYPQVLLLQCRSCEHATELIGC 91 (98)
T ss_pred eECHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 3788888888877631110 01111234445555566666666666555555443
No 416
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=36.54 E-value=1.4e+02 Score=30.55 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=10.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEH 261 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr 261 (357)
+..|..+++.+...++.+..++
T Consensus 160 ~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 160 ANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444443
No 417
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.54 E-value=2.2e+02 Score=27.39 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+..++..+..+...|..|+..+.++++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554443
No 418
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=36.53 E-value=2e+02 Score=29.20 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred CCCHHHHH--HHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q psy14684 207 DLSETQLS--LIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 207 ~LSeeQl~--lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~ 258 (357)
+||+-|.. -||.+|-|+|- -.+++++=|.||.+|+.+..++.
T Consensus 59 YLTPLQQKEV~iRHLkakLke----------s~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 59 YLTPLQQKEVCIRHLKAKLKE----------SENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred hcChHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 36666654 25666555542 12333444555555555554443
No 419
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=36.45 E-value=2.8e+02 Score=24.90 Aligned_cols=67 Identities=12% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccceeecCCC-cEEE
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDG-NVEL 311 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP~ey~Lq~~~dG-~V~l 311 (357)
.=+..|..+.+-+..|...|......+..++..|..-+...+..-...-+.-..|++...... +|.|
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~g~~ki~t~~~tisirk~~~sv~I 114 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAAGIKKIKTPLFTISIRKNPPSVEI 114 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeecCceEEEEecCCCCeEe
Confidence 345668888899999999999999999999999988888776654444455566666665544 6666
No 420
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.33 E-value=1.5e+02 Score=24.42 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+++-++-|....+.|..+...+..++..+..++..|...
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666666666666655543
No 421
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.30 E-value=12 Score=40.62 Aligned_cols=51 Identities=22% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc-cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14684 210 ETQLSLIRDIRRRG-KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEH 261 (357)
Q Consensus 210 eeQl~lIRdIRRRg-KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr 261 (357)
.+|++.+|...-|. |=-..+++||+ |++-+..|..+|+.|+.++..|...+
T Consensus 297 rDElD~lR~~a~r~~klE~~ve~YKk-KLed~~~lk~qvk~Lee~N~~l~e~~ 348 (713)
T PF05622_consen 297 RDELDELREKADRADKLENEVEKYKK-KLEDLEDLKRQVKELEEDNAVLLETK 348 (713)
T ss_dssp -----------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555443 44456688886 68888888888887777776555333
No 422
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=36.14 E-value=81 Score=25.01 Aligned_cols=19 Identities=16% Similarity=0.539 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L 264 (357)
.+..|..++..|..|+..|
T Consensus 22 ~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 423
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=35.98 E-value=4.3e+02 Score=27.01 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
.|..|+.+...++.+.++|.+|+..|.
T Consensus 143 ~i~~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 143 KIERLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence 344455544445555555555554433
No 424
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=35.94 E-value=1.3e+02 Score=30.64 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=40.0
Q ss_pred HHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q psy14684 179 ARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 179 A~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~ 258 (357)
++.+..+=+++.-+-+.-..|+..|.. |+++=.+.| +.|..|+.+++.|..+..-+.
T Consensus 116 G~~v~~i~tn~KYLIvn~~~F~~rf~~----------Ied~~~~kK-------------~~I~~L~~qisaLdkqi~ai~ 172 (308)
T PF06717_consen 116 GRPVPDIKTNDKYLIVNDQDFNYRFNQ----------IEDEYNRKK-------------NKIPGLNKQISALDKQIVAIN 172 (308)
T ss_pred CCcCCccccCCcEEEecchhHHHHHHH----------HHHHHHHHh-------------hhhHHHHHHHHHHHHHHHHHH
Confidence 334444455666677777889887665 655554444 556778888877777777666
Q ss_pred HHHHH
Q psy14684 259 QEHEY 263 (357)
Q Consensus 259 kEr~~ 263 (357)
+++..
T Consensus 173 Kkid~ 177 (308)
T PF06717_consen 173 KKIDR 177 (308)
T ss_pred HHHHh
Confidence 55543
No 425
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.86 E-value=2.8e+02 Score=27.59 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 264 LSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 264 L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.+.|.++|...|..||..-+...|
T Consensus 223 fmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 223 FMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677778888877665555
No 426
>KOG2391|consensus
Probab=35.72 E-value=1.7e+02 Score=30.35 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=26.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy14684 238 DQILSLADEVKQMKDKKRHLM-------QEHEYLSQECSRVKSQFSQLYKHVFNALRDSD 290 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~-------kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~ 290 (357)
+.+..|..+.+.|++..|.|+ .+++.|++++..|+..+.-|-..|-..|.+-+
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 344555555555555555555 44444555555555555545555555444433
No 427
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=35.51 E-value=2.3e+02 Score=29.02 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.|+.....|+.+++.|..++..+..++..+++++..|..++-
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (398)
T PTZ00454 19 DLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVK 60 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555554443
No 428
>PF13166 AAA_13: AAA domain
Probab=35.44 E-value=3.3e+02 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=15.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
.|..++.++..+..+...+.+++.+|..+
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444
No 429
>PRK15396 murein lipoprotein; Provisional
Probab=35.32 E-value=2.2e+02 Score=23.44 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
.+..|..+|..|..+.++|..+...++......++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665555444444
No 430
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=35.10 E-value=39 Score=28.36 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14684 260 EHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 260 Er~~L~~e~~~LKqkl~~L 278 (357)
++.....|...|++++..|
T Consensus 45 evtr~A~EN~rL~ee~rrl 63 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555566666655443
No 431
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=35.07 E-value=3.9e+02 Score=27.13 Aligned_cols=43 Identities=19% Similarity=0.421 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+.+|-.++..|+.+...+..++..|..+.+++..++..+|+.
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~ 201 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEE 201 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777766666666666666666666554
No 432
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=34.84 E-value=1.7e+02 Score=28.09 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
+.=..-|+.+++.|..|...+..+..+++..+.+.+..++..+.
T Consensus 23 ~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~ 66 (211)
T COG1394 23 RRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLA 66 (211)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345578888888888888888888888888888888776543
No 433
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=34.73 E-value=50 Score=29.77 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=17.7
Q ss_pred CChhhHhcCCHHHHHHHHhc
Q psy14684 186 IPVNDIINLPMDEFNERLSK 205 (357)
Q Consensus 186 FSvdeIVnLPV~EFNelLs~ 205 (357)
++.|+|.+||.+||-+||..
T Consensus 12 ~~l~~L~~m~~~~~~~l~~a 31 (134)
T PRK04038 12 YTLEELQEMSLEEFAELLPA 31 (134)
T ss_pred cCHHHHHcCCHHHHHHHcch
Confidence 67899999999999999764
No 434
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.65 E-value=2.3e+02 Score=22.33 Aligned_cols=42 Identities=10% Similarity=0.216 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
..|++|+...+..+-.+..........+.+|.+++..|-.++
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667766666666666666665555566666655555444
No 435
>PF14645 Chibby: Chibby family
Probab=34.56 E-value=1e+02 Score=26.80 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+...|+.++..|..|++.|+-+++-|-+.|
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDML 101 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDML 101 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444
No 436
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.29 E-value=2.1e+02 Score=22.28 Aligned_cols=37 Identities=8% Similarity=0.274 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+++.++.|......+..++..+...+++++....=+.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566566666666666666666654333
No 437
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=34.14 E-value=84 Score=31.78 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 243 LADEVKQMKDKKRHLMQ---E-HEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~k---E-r~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.|..+.+|+.+.+.|+. + ...+..++..|++++..|.+++++.|.
T Consensus 8 fe~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 56 (316)
T TIGR00513 8 FEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKIFSNLG 56 (316)
T ss_pred hhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444444432 1 123556666666666666666555443
No 438
>PRK07857 hypothetical protein; Provisional
Probab=34.09 E-value=1.2e+02 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.+.+|-.+++++-.+.-+|+.|+..+..++.++|.+
T Consensus 29 ~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~ 64 (106)
T PRK07857 29 EIDELREEIDRLDAEILALVKRRTEVSQAIGKARMA 64 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566666666667777777777777777764
No 439
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=34.07 E-value=2.3e+02 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
..|..+...|..++.+|...++.|.
T Consensus 76 ~~l~~~~~~l~~~i~~l~~~~~~l~ 100 (103)
T cd01106 76 EALREQKELLEEKKERLDKLIKTID 100 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455545555555544444443
No 440
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=34.03 E-value=79 Score=28.62 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+||+-+..+..+.+.+..+...+.++++.++.++..-++.|
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kv 83 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKV 83 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceE
Confidence 68888888888888888888888888888888887666553
No 441
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.02 E-value=1.2e+02 Score=27.16 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
|+++.++|..|.+.+..++..-+..+.....-
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555444444433
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.80 E-value=3e+02 Score=32.32 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
++.....|+.+++.|..+.+.|..++..+..++..+...+
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3334445555555555555555444444444444443333
No 443
>KOG2010|consensus
Probab=33.77 E-value=1.7e+02 Score=30.49 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=34.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFN 284 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~ 284 (357)
|.+.++|..+..-..+.+.+.+|...++..+..|..++++|.+.+-+
T Consensus 154 D~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 154 DVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777788888888888887777777777777766554
No 444
>KOG0994|consensus
Probab=33.77 E-value=2.2e+02 Score=34.38 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=27.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+|++.|.+||.+...-.+..+.+..|+..|.+++.++.+-+
T Consensus 1707 ~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1707 EKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 67788888887776666666666666666666655554444
No 445
>PRK12704 phosphodiesterase; Provisional
Probab=33.76 E-value=3.9e+02 Score=28.60 Aligned_cols=6 Identities=33% Similarity=0.534 Sum_probs=2.2
Q ss_pred cEEEEe
Q psy14684 308 NVELVR 313 (357)
Q Consensus 308 ~V~lVP 313 (357)
+|-+|+
T Consensus 210 ~~~~v~ 215 (520)
T PRK12704 210 TVSVVN 215 (520)
T ss_pred ceeeee
Confidence 333333
No 446
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=33.72 E-value=62 Score=28.23 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=5.8
Q ss_pred CCCCCCCCCcccc
Q psy14684 288 DSDGNPYSPFEFS 300 (357)
Q Consensus 288 D~~G~P~SP~ey~ 300 (357)
++.|.+++|....
T Consensus 114 ~~~G~~FDp~~he 126 (165)
T PF01025_consen 114 EPVGEPFDPNLHE 126 (165)
T ss_dssp --TSSB--TTTEE
T ss_pred CCCCCCCCHHHhe
Confidence 4558888886443
No 447
>KOG4603|consensus
Probab=33.69 E-value=3.7e+02 Score=25.80 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=37.5
Q ss_pred CCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHH--HHHHHHHH
Q psy14684 183 NIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKD--KKRHLMQE 260 (357)
Q Consensus 183 ~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~--EkekL~kE 260 (357)
+|=|-+.+...|+-++=-..|.+ .+ .|=..|-+--+|.||. .|.|++.|.. -.+.++.+
T Consensus 64 KIY~a~QDqF~~~~~eel~~ld~------~i-----~~l~ek~q~l~~t~s~--------veaEik~L~s~Lt~eemQe~ 124 (201)
T KOG4603|consen 64 KIYFADQDQFDMVSDEELQVLDG------KI-----VALTEKVQSLQQTCSY--------VEAEIKELSSALTTEEMQEE 124 (201)
T ss_pred eeEeecHHhhcCCChHHHHHHhH------HH-----HHHHHHHHHHHHHHHH--------HHHHHHHHHHhcChHHHHHH
Confidence 67777777777755443333332 11 1224455555666654 3444444333 23344445
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14684 261 HEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 261 r~~L~~e~~~LKqkl~~ 277 (357)
+++|.++...++++|..
T Consensus 125 i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 125 IQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555554443
No 448
>KOG4797|consensus
Probab=33.68 E-value=2.5e+02 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=10.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
..|..++.+|...+..|.+|+..|+
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 449
>KOG0239|consensus
Probab=33.65 E-value=3.5e+02 Score=30.06 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=11.6
Q ss_pred ccchHHHHhhhhhHHHHHHhHHHHHHH
Q psy14684 223 GKNKVAAQNCRKRKLDQILSLADEVKQ 249 (357)
Q Consensus 223 gKNRvAAQnCRKRKLd~I~~LEdEV~~ 249 (357)
.+++-....|...+.. |..|+.++..
T Consensus 227 ~~~~~l~~~~~~~~~~-i~~l~~~l~~ 252 (670)
T KOG0239|consen 227 RNIKPLEGLESTIKKK-IQALQQELEE 252 (670)
T ss_pred HhhhhhhhhhhHHHHH-HHHHHHHHHH
Confidence 3444444555444333 4444444444
No 450
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=33.62 E-value=2.4e+02 Score=25.34 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=27.1
Q ss_pred cchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy14684 224 KNKVAAQNCRKRKLDQILSLADEVKQMKDKKRH 256 (357)
Q Consensus 224 KNRvAAQnCRKRKLd~I~~LEdEV~~Lk~Ekek 256 (357)
-++.+|.-|-..-++.+.+|+..+.+++++-+.
T Consensus 7 ~l~~~~~e~~~e~lee~~ek~eq~~~~r~~e~~ 39 (128)
T COG2916 7 TLRAMARETYLELLEEMLEKEEQVVQERQEEEA 39 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999888887776553
No 451
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.44 E-value=1.7e+02 Score=27.58 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 257 LMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 257 L~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+.+|+.+.+.+++.++.++..|-+.
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555444433
No 452
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=33.37 E-value=3e+02 Score=23.24 Aligned_cols=48 Identities=27% Similarity=0.503 Sum_probs=28.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
+..+..|..+.+.-.. ...+..++..+.++++.-+++.. ..+.||+.|
T Consensus 37 ~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~-v~k~v~q~l 84 (106)
T PF05837_consen 37 AQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWR-VMKNVFQAL 84 (106)
T ss_pred HHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4444555544443333 44566677777777777777764 566777654
No 453
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.28 E-value=3.8e+02 Score=26.93 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSL-----ADEVKQMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~L-----EdEV~~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
.+.+..|-+-..+=..++++|-.+--..++|.++=.-.-..+.++..- .++++.++.+...+..++.....++.+
T Consensus 150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 150 DENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q psy14684 271 VKSQFSQLYKHV 282 (357)
Q Consensus 271 LKqkl~~L~q~V 282 (357)
+++++..|-..|
T Consensus 230 ~~~~l~~l~~~I 241 (312)
T smart00787 230 LEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHH
No 454
>PRK10698 phage shock protein PspA; Provisional
Probab=33.27 E-value=1.8e+02 Score=27.49 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=25.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+.+..|+.++..+....++|......|...+.+++.+-..|
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666666554444
No 455
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.22 E-value=1.3e+02 Score=30.57 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHh-ccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q psy14684 209 SETQLSLIRDIRRR-GKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHE--------------YLSQECSRVKS 273 (357)
Q Consensus 209 SeeQl~lIRdIRRR-gKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~--------------~L~~e~~~LKq 273 (357)
+.+...+|.++-+- .+|.. .+.==+--+|...+|..|-+..+++.++|..|.. .|..|+.-|++
T Consensus 125 ~~ere~lV~qLEk~~~q~~q-Le~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~e 203 (319)
T PF09789_consen 125 PHEREDLVEQLEKLREQIEQ-LERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKE 203 (319)
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence 37777778777431 11111 1111112233333344444444444444443322 24455666666
Q ss_pred HHHHHHHHH
Q psy14684 274 QFSQLYKHV 282 (357)
Q Consensus 274 kl~~L~q~V 282 (357)
+|.++..++
T Consensus 204 rl~q~qeE~ 212 (319)
T PF09789_consen 204 RLKQLQEEK 212 (319)
T ss_pred HHHHHHHHH
Confidence 666655543
No 456
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=33.12 E-value=1.2e+02 Score=21.48 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
|..+++.|.+.+++|+..+.+|+.
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555556666666666666666554
No 457
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.92 E-value=66 Score=26.06 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=20.8
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 230 QNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 230 QnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
|+||.- +..+-+++.-+++...+.+.|..++...+.-+..++++
T Consensus 38 q~ar~~-i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 38 QKARAA-IRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHH-HHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344433 33444444555555555555554444444444444443
No 458
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=32.79 E-value=2e+02 Score=26.88 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=7.5
Q ss_pred CCCCHHHHHHH
Q psy14684 206 YDLSETQLSLI 216 (357)
Q Consensus 206 ~~LSeeQl~lI 216 (357)
-.||++|.+.+
T Consensus 24 ~~LsEeE~eeL 34 (162)
T PF04201_consen 24 EGLSEEEREEL 34 (162)
T ss_pred ccCCHHHHHHH
Confidence 35888887654
No 459
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=32.55 E-value=1.4e+02 Score=25.53 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=20.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+++-.|+|-.-|+....+|..++..|..++.+++.++
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555556666666666666666666555544
No 460
>PRK14011 prefoldin subunit alpha; Provisional
Probab=32.55 E-value=2.5e+02 Score=25.25 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=27.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.+..|+..++.|....++|..-+.++..+++++...+..-++.+-
T Consensus 88 eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~ 133 (144)
T PRK14011 88 EVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIE 133 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666655555554443
No 461
>PRK14154 heat shock protein GrpE; Provisional
Probab=32.40 E-value=1.7e+02 Score=28.07 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=7.8
Q ss_pred CC-CCCCCCCccc
Q psy14684 288 DS-DGNPYSPFEF 299 (357)
Q Consensus 288 D~-~G~P~SP~ey 299 (357)
++ -|.|++|...
T Consensus 156 ~~~~G~~FDP~~H 168 (208)
T PRK14154 156 NPNPGDPFDPALH 168 (208)
T ss_pred cCCCCCCCChhHh
Confidence 45 3888888543
No 462
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=32.29 E-value=4.6e+02 Score=26.84 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=25.4
Q ss_pred CCCCChhhHh---------cCCHHHHHHHHhcCCCCHHHHHHHHHH
Q psy14684 183 NIPIPVNDII---------NLPMDEFNERLSKYDLSETQLSLIRDI 219 (357)
Q Consensus 183 ~IPFSvdeIV---------nLPV~EFNelLs~~~LSeeQl~lIRdI 219 (357)
.+.+|.++|+ .|+++-+..|+.-.+ |++|+..|+.-
T Consensus 91 ~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~P-t~eE~~~l~~~ 135 (432)
T smart00498 91 KLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAP-TKEELKKLREY 135 (432)
T ss_pred hcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCc-CHHHHHHHHHh
Confidence 3467777774 477777777776544 88888888665
No 463
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=32.18 E-value=1.3e+02 Score=28.87 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy14684 239 QILSLADEVKQMKDK-KRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNP 293 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~E-kekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P 293 (357)
++.+.++++..|... ..+-+.+..+|..-+.+++..-+.+..+++..+.+++|..
T Consensus 146 q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~~e~~~ 201 (221)
T PF10376_consen 146 QVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSEEEGEK 201 (221)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 455566666666552 2334444456777777777666666666667777756643
No 464
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=32.17 E-value=1.7e+02 Score=23.95 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHH
Q psy14684 207 DLSETQLSLIRDIRR 221 (357)
Q Consensus 207 ~LSeeQl~lIRdIRR 221 (357)
.+|++++..|+-||+
T Consensus 38 ~Y~~~~v~~l~~I~~ 52 (99)
T cd04772 38 IYTDKHIAALRAYRA 52 (99)
T ss_pred ecCHHHHHHHHHHHH
Confidence 367777777777764
No 465
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=32.16 E-value=53 Score=25.77 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=26.2
Q ss_pred hhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q psy14684 189 NDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGK 224 (357)
Q Consensus 189 deIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgK 224 (357)
++|-.|+|+||.+.+.- =+.|+++++..+.+-+
T Consensus 16 ~dLs~lSv~EL~~RIa~---L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 16 EDLSLLSVEELEERIAL---LEAEIARLEAAIAKKS 48 (59)
T ss_pred CCchhcCHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45888999999999985 6788888887776443
No 466
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=32.10 E-value=3.3e+02 Score=23.42 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCCCHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLS 214 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~ 214 (357)
.=|++|..+..+++++-.
T Consensus 26 k~~~~LVkkGe~~~ee~k 43 (118)
T TIGR01837 26 KFFNRLVKEGELAEKRGQ 43 (118)
T ss_pred HHHHHHHHhccccHHHHH
Confidence 347888888888888763
No 467
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=32.06 E-value=15 Score=35.81 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.|.+....+.+|+.-.+-|+.|+..|++|+..|+..-..|.
T Consensus 123 ~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL~ 163 (243)
T PF08961_consen 123 RIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARLL 163 (243)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444443
No 468
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=31.90 E-value=1.1e+02 Score=25.47 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 252 DKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 252 ~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+.|+|..|++.+..|+++|+..|.
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~ 43 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILA 43 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999985
No 469
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=31.76 E-value=2.1e+02 Score=28.98 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=31.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
++..++..+|+.+...|..++.+.+.....|...+..+.....-+.
T Consensus 104 k~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 104 KRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777777777777776655443
No 470
>KOG1510|consensus
Probab=31.73 E-value=2.1e+02 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
.|+.+...-..|++.|..+.+.|...++.+
T Consensus 95 kLq~en~e~~~el~~~v~~~e~Ll~~vq~~ 124 (139)
T KOG1510|consen 95 KLQEENEEVALELEELVSKGEKLLEQVQSL 124 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444443333333333333
No 471
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=31.67 E-value=38 Score=27.75 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=25.9
Q ss_pred hhhHhcCCHHH---HHHHHhcCCCCHHHHHHHHHHHHhcc
Q psy14684 188 VNDIINLPMDE---FNERLSKYDLSETQLSLIRDIRRRGK 224 (357)
Q Consensus 188 vdeIVnLPV~E---FNelLs~~~LSeeQl~lIRdIRRRgK 224 (357)
.+.||.|.-+| |...-..|+|+|.|+..| +|+..|
T Consensus 2 ~~riIeMAweDRtpFeaI~~~fGL~E~eVi~l--MR~~lk 39 (72)
T TIGR03643 2 IDRIIEMAWEDRTPFEAIEQQFGLSEKEVIKL--MRQNLK 39 (72)
T ss_pred HHHHHHHHHccCCCHHHHHHHHCCCHHHHHHH--HHhhcC
Confidence 35666666554 777778899999999655 787776
No 472
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=31.61 E-value=3e+02 Score=25.53 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 228 AAQNCRKRKLDQILSLADEVKQMKDKKRHL-------MQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 228 AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL-------~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
++-+=|.+.......++.++..++.+.++| ...+..+..++.++..++..+...
T Consensus 105 ~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~ 165 (216)
T cd07627 105 AAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKE 165 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.58 E-value=1e+02 Score=23.72 Aligned_cols=13 Identities=15% Similarity=0.412 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLM 258 (357)
Q Consensus 246 EV~~Lk~EkekL~ 258 (357)
|+..|..+.++|.
T Consensus 5 E~~rL~Kel~kl~ 17 (66)
T PF10458_consen 5 EIERLEKELEKLE 17 (66)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 474
>PF12938 M_domain: M domain of GW182
Probab=31.49 E-value=1.8e+02 Score=28.61 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHH
Q psy14684 208 LSETQLSLIRDI 219 (357)
Q Consensus 208 LSeeQl~lIRdI 219 (357)
|....+.+|.++
T Consensus 144 L~pqtL~LLnQL 155 (235)
T PF12938_consen 144 LAPQTLTLLNQL 155 (235)
T ss_pred CCHHHHHHHHHH
Confidence 677777777666
No 475
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.29 E-value=1.7e+02 Score=29.78 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=37.6
Q ss_pred hcCCHHHHHHHHhcCCCCHHHHHHHHHHHH-h---ccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 192 INLPMDEFNERLSKYDLSETQLSLIRDIRR-R---GKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 192 VnLPV~EFNelLs~~~LSeeQl~lIRdIRR-R---gKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
..||..-|...-.. +.|++.|+..|. | .-+--||-.=-|+|.+. -..++..|++|+..|......|.+.
T Consensus 10 eGL~~~aLqKIqel----E~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~---ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 10 EGLPTRALQKIQEL----EQQLDKLKKERQQRQFQLESLEAALQKQKQKVEE---EKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred ccCCHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 45566666655443 667777765552 1 11223333333333221 1234444555555555555555555
Q ss_pred HHHHHHHHH
Q psy14684 268 CSRVKSQFS 276 (357)
Q Consensus 268 ~~~LKqkl~ 276 (357)
++.|-..|.
T Consensus 83 rqKlshdlq 91 (307)
T PF10481_consen 83 RQKLSHDLQ 91 (307)
T ss_pred HHHhhHHHh
Confidence 555555443
No 476
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=31.24 E-value=1.2e+02 Score=28.89 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHH
Q psy14684 177 KKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQL 213 (357)
Q Consensus 177 ~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl 213 (357)
+.|++++|-+++++|-+. .++|...|...++|.+..
T Consensus 43 q~A~~~gi~v~~~ev~~~-~e~~~~~L~~~G~~~~~~ 78 (256)
T TIGR02933 43 RAADEIGVVIPPSLLEEA-PQALAQALDEQALDAAER 78 (256)
T ss_pred HHHHHcCCCCCHHHHHHH-HHHHHHHHHHcCCCHHHH
Confidence 678899999999999888 899999999999998775
No 477
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=31.14 E-value=1.1e+02 Score=30.91 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 263 YLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 263 ~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.+..|+..|+.++..|..++|+.|.
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~l~ 56 (319)
T PRK05724 32 DLSEEIERLEKKLEELTKKIYSNLT 56 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566677777777777666665543
No 478
>smart00340 HALZ homeobox associated leucin zipper.
Probab=31.12 E-value=1.3e+02 Score=22.56 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
|...-+.|..||.+|++|+++|++
T Consensus 10 LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566788888888888888765
No 479
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=31.10 E-value=38 Score=27.80 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=24.9
Q ss_pred hhHhcCCHHH---HHHHHhcCCCCHHHHHHHHHHHHhcc
Q psy14684 189 NDIINLPMDE---FNERLSKYDLSETQLSLIRDIRRRGK 224 (357)
Q Consensus 189 deIVnLPV~E---FNelLs~~~LSeeQl~lIRdIRRRgK 224 (357)
+.||.|.-+| |...-..++|+|.|+..| +|+..|
T Consensus 2 ~riIeMAweDRtpFeaI~~qfGl~E~eVi~l--MR~~Lk 38 (73)
T PF10985_consen 2 SRIIEMAWEDRTPFEAIERQFGLSEKEVIKL--MRKELK 38 (73)
T ss_pred HHHHHHHHccCCCHHHHHHHHCCCHHHHHHH--HHhhcC
Confidence 4566665554 777778899999999655 777766
No 480
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=30.82 E-value=1.7e+02 Score=24.15 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=31.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEH---EYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr---~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.|..+.+.|..|+.+.+.|..-. .+|...++.+-.+|..|-..|-
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~ 59 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVN 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776543 4477777777777776665543
No 481
>PRK01156 chromosome segregation protein; Provisional
Probab=30.80 E-value=3.9e+02 Score=29.64 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHH-HHh-----------HHHHHHHHHHHHHHHHHHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQ-ILS-----------LADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~-I~~-----------LEdEV~~Lk~EkekL~kEr~~L 264 (357)
.+++..+..+.-=..++..+...-+..++++-.-.....++.. |.. +..+++.+..+.+.|..++..|
T Consensus 349 ~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l 428 (895)
T PRK01156 349 DDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q psy14684 265 SQECSRVKSQFSQLYKHVFNALRDSDGNPYSP 296 (357)
Q Consensus 265 ~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP 296 (357)
..++.+++..+..|- .+...|. ++|.||
T Consensus 429 ~~~i~~l~~~~~el~-~~~~~l~---~~~~Cp 456 (895)
T PRK01156 429 NQRIRALRENLDELS-RNMEMLN---GQSVCP 456 (895)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhc---cCCCCC
No 482
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=30.79 E-value=1.6e+02 Score=23.28 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
..|-.+++.+-.+.-.|+.++..+..++.++|..
T Consensus 3 ~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~ 36 (74)
T TIGR01808 3 DTLREEIDRLDAEILALVKRRAEISQAIGKARMA 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777777777777777777777764
No 483
>PF09236 AHSP: Alpha-haemoglobin stabilising protein; InterPro: IPR015317 Alpha-haemoglobin stabilising protein (AHSP) acts a molecular chaperone for free alpha-haemoglobin, preventing the harmful aggregation of alpha-haemoglobin during normal erythroid cell development: it specifically protects free alpha-haemoglobin from precipitation. AHSP adopts a helical secondary structure consisting of an elongated antiparallel three alpha-helix bundle []. ; GO: 0030492 hemoglobin binding, 0006457 protein folding, 0020027 hemoglobin metabolic process, 0030097 hemopoiesis, 0050821 protein stabilization; PDB: 1Y01_A 1XZY_A 3OVU_A 1W0A_A 3IA3_C 1Z8U_A 1W0B_A 1W09_A.
Probab=30.68 E-value=93 Score=26.46 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.5
Q ss_pred ChhhHhcCCHHHHHHHHhcCCCC
Q psy14684 187 PVNDIINLPMDEFNERLSKYDLS 209 (357)
Q Consensus 187 SvdeIVnLPV~EFNelLs~~~LS 209 (357)
+..+||++-+.|||-||..--++
T Consensus 2 ~NkDlIs~gmkeFn~lLnqQvF~ 24 (89)
T PF09236_consen 2 ANKDLISTGMKEFNVLLNQQVFD 24 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-CC
T ss_pred ccHHHHHHHHHHHHHHHhHhhcC
Confidence 35789999999999999875554
No 484
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=30.67 E-value=3.3e+02 Score=25.45 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~ 258 (357)
.+..|+.||..+....+...
T Consensus 150 K~~~~~~ev~~~e~~~~~a~ 169 (224)
T cd07623 150 KLDQAQQEIKEWEAKVDRGQ 169 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 485
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.59 E-value=1.8e+02 Score=28.71 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
.|..++..++.+..+|..|+..+...++.++
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777776666666
No 486
>KOG3091|consensus
Probab=30.58 E-value=1.3e+02 Score=32.46 Aligned_cols=85 Identities=15% Similarity=0.318 Sum_probs=42.3
Q ss_pred hHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 190 DIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 190 eIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
.+|=.||-=|++|.++..+=++++..- | ++|..++++|.+|+ ++.......|.
T Consensus 327 kliPVpvvGF~dL~~R~K~Q~q~~~~~---r-----------------~ri~~i~e~v~eLq-------k~~ad~~~KI~ 379 (508)
T KOG3091|consen 327 KLIPVPVVGFEDLRQRLKVQDQEVKQH---R-----------------IRINAIGERVTELQ-------KHHADAVAKIE 379 (508)
T ss_pred cccceeccchHHHHHHHHHHHHHHHHH---H-----------------HHHHHHHHHHHHHH-------hhhhhHHHHHH
Confidence 344566777777777754444444332 1 22344444554444 22234444455
Q ss_pred HHHHHHHHHHHHHhhhc-----cCCCCCCCCCcccce
Q psy14684 270 RVKSQFSQLYKHVFNAL-----RDSDGNPYSPFEFSL 301 (357)
Q Consensus 270 ~LKqkl~~L~q~Vf~~L-----rD~~G~P~SP~ey~L 301 (357)
++|.|...|...|++-+ -..-|.|+.|.|=.|
T Consensus 380 ~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 380 EAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Confidence 55555555554444321 133566777766544
No 487
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=30.52 E-value=3.5e+02 Score=23.20 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 208 LSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEH-EYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 208 LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr-~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
++++++..|+.|+ +.-.-...-.-+..+.++.++-..-..+...++.++ ..+.+++.+|......|...+-...
T Consensus 39 Y~~~~~~~l~~I~-----~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (133)
T cd04787 39 YSEKDLSRLRFIL-----SARQLGFSLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQWQ 113 (133)
T ss_pred CCHHHHHHHHHHH-----HHHHcCCCHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCC
Q psy14684 287 RDSDGNP 293 (357)
Q Consensus 287 rD~~G~P 293 (357)
...++.|
T Consensus 114 ~~~~~~~ 120 (133)
T cd04787 114 QMPDGAP 120 (133)
T ss_pred hCCCCCC
No 488
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=30.41 E-value=1.5e+02 Score=32.34 Aligned_cols=46 Identities=28% Similarity=0.334 Sum_probs=30.0
Q ss_pred HHhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 240 ILSLADEVKQMKDKKRHLM-----------------QEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~-----------------kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
|..-|.|++.|+...+.|. .|+.+|.++++.+.-+...|...|++.
T Consensus 339 ie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~ 401 (622)
T COG5185 339 IELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSR 401 (622)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 3344555555655555444 677778888888877777777777654
No 489
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=30.25 E-value=3.5e+02 Score=23.12 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 208 LSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSL--------ADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 208 LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~L--------EdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
.|++++..|+.|+ ..-.-...-..+..+..+ ++-..-|..+.+.|..++++|...+..|.+.+..
T Consensus 39 Y~~~~l~~l~~I~-----~lr~lG~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T TIGR02047 39 YTVGHVERLAFIR-----NCRTLDMSLAEIRQLLRYQDKPEKSCSDVNALLDEHISHVRARIIKLQALIEQLVDLRGR 111 (127)
T ss_pred CCHHHHHHHHHHH-----HHHHcCCCHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 490
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=30.24 E-value=1.6e+02 Score=30.91 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRH---------LMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~Ekek---------L~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+++.+||.+++.+...... ++.+...|.+++..|++++.-|...+
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l 223 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENML 223 (475)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=30.12 E-value=2e+02 Score=26.90 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+...+|++|+++|..+.+.|. .+....+.||.+...|..+.
T Consensus 120 ~~~~eL~~eI~~L~~~i~~le----~~~~~~k~LrnKa~~L~~eL 160 (171)
T PF04799_consen 120 QTKNELEDEIKQLEKEIQRLE----EIQSKSKTLRNKANWLESEL 160 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
No 492
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=29.95 E-value=1.6e+02 Score=24.67 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+..|......|+.+.+.|...+..|...+.+++.-+..|
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.89 E-value=2.7e+02 Score=28.10 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 195 PMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 195 PV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.++++++-|+. +|..|+ .+.|..+++.+..++...+.|.+++..|..++..+...
T Consensus 56 ~ld~~~~kl~~--Ms~~ql-----------------------~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 56 SLDELKEKLKE--MSSTQL-----------------------RANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred hhHHHHHHHHh--cCHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q psy14684 275 FSQ 277 (357)
Q Consensus 275 l~~ 277 (357)
+..
T Consensus 111 ~~~ 113 (301)
T PF06120_consen 111 LAE 113 (301)
T ss_pred Hhc
No 494
>KOG2185|consensus
Probab=29.83 E-value=2e+02 Score=30.74 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 221 RRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLM-----------------QEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 221 RRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~-----------------kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
|+ ||+--|+..-|-+--....+|+||..|+.+.-+|+ .......+++..|..+...|.+++.
T Consensus 397 rk-kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~ 475 (486)
T KOG2185|consen 397 RK-KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQV 475 (486)
T ss_pred hh-hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q ss_pred hh
Q psy14684 284 NA 285 (357)
Q Consensus 284 ~~ 285 (357)
++
T Consensus 476 sr 477 (486)
T KOG2185|consen 476 SR 477 (486)
T ss_pred hh
No 495
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=29.73 E-value=4e+02 Score=24.44 Aligned_cols=74 Identities=27% Similarity=0.394 Sum_probs=0.0
Q ss_pred cCCCCChhhHhcCCHHHHHHHHhcCCCCHHHH-HHHHHHHHhc-cchHHHHhhhhhHHHHHHh-------HHHHHHHHHH
Q psy14684 182 LNIPIPVNDIINLPMDEFNERLSKYDLSETQL-SLIRDIRRRG-KNKVAAQNCRKRKLDQILS-------LADEVKQMKD 252 (357)
Q Consensus 182 l~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl-~lIRdIRRRg-KNRvAAQnCRKRKLd~I~~-------LEdEV~~Lk~ 252 (357)
+.||||- ||+|-. +++|.+++-. +-|++..|-|..-++.+.. -||++..+..
T Consensus 94 iri~iP~-------------------lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~ 154 (179)
T cd00520 94 IRVNLPP-------------------LTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEE 154 (179)
T ss_pred EEecCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqk 274 (357)
+.++|..+-..-..++-+-|++
T Consensus 155 ~iqkltd~~i~~id~~~~~Kek 176 (179)
T cd00520 155 DLQKLTDEYIKKIDELLKSKEK 176 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=29.58 E-value=1.8e+02 Score=24.46 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.+..|..+|..|..+.++|..+.+.++...+.-+++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~E 60 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSE 60 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG3270|consensus
Probab=29.57 E-value=1.3e+02 Score=29.78 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=0.0
Q ss_pred CHHHHHHHHh--cCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHH
Q psy14684 195 PMDEFNERLS--KYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLA------DEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 195 PV~EFNelLs--~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LE------dEV~~Lk~EkekL~kEr~~L~~ 266 (357)
+|+|+|++++ --+.-+.-+++ +|+...|. ...+.|+...++|-++...+.-
T Consensus 78 sv~El~~l~a~r~~d~~~Q~i~l---------------------ldQv~~l~~l~~~~~~~e~L~~~~e~l~r~nl~~~p 136 (244)
T KOG3270|consen 78 SVDELNELLAERDKDAEEQFIEL---------------------LDQVQKLNGLEVARKIQEKLVKSVEKLARENLEKEP 136 (244)
T ss_pred hhHHHHHhhhhhchhhhHHHHHH---------------------HHHHHHhhccchhHHHHHHHHHHHHHhcccchhhcc
Q ss_pred HHHHHHHHHHHHH
Q psy14684 267 ECSRVKSQFSQLY 279 (357)
Q Consensus 267 e~~~LKqkl~~L~ 279 (357)
.+.++++.+..++
T Consensus 137 ~l~el~~~~~~~~ 149 (244)
T KOG3270|consen 137 ALVELRNQASDIF 149 (244)
T ss_pred chHHHHhhhhhhh
No 498
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=29.56 E-value=3.5e+02 Score=27.19 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHH-----HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14684 189 NDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVA-----AQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEY 263 (357)
Q Consensus 189 deIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvA-----AQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~ 263 (357)
|.|+|+| .++-.+|.. |++-++. +.+|+++..-++. -+.--.-+.+....|+.++++|...-+-+.+|...
T Consensus 12 d~l~n~P-~et~~~~t~--l~~iD~k-~~d~~k~l~q~~si~k~~~~~~~~t~~e~ed~l~k~i~Ell~~a~~~~~~~~~ 87 (271)
T COG5034 12 DHLANVP-SETDIRFTE--LSEIDAK-VCDIIKNLRQMISILKKIIDLDSQTYEEVEDGLLKEIRELLLKAIYIQKEKSD 87 (271)
T ss_pred HHHHhCC-hhhhhhhhh--hhhhhHH-HHHHHHHHHHHHHHHHHHhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 264 LSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 264 L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
|...+..+..++..++..=+.+.
T Consensus 88 l~d~~~~l~~Rh~~~~d~~~a~~ 110 (271)
T COG5034 88 LADRAEKLLRRHRKLLDDRIAKR 110 (271)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhh
No 499
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=29.51 E-value=2.7e+02 Score=21.58 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=0.0
Q ss_pred CChhhHhc-----CCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14684 186 IPVNDIIN-----LPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 186 FSvdeIVn-----LPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kE 260 (357)
|.+++++. .++.++..+..+ |..+-...-.++| ++...|.|.= ..--++|..|+.....|...
T Consensus 6 fd~~~~~~~~l~~~s~~~i~~~~~~--L~~~i~~~~~eLr-----~~V~~nY~~f-----I~as~~I~~m~~~~~~l~~~ 73 (87)
T PF08700_consen 6 FDVDEYFKDLLKNSSIKEIRQLENK--LRQEIEEKDEELR-----KLVYENYRDF-----IEASDEISSMENDLSELRNL 73 (87)
T ss_pred CCHHHHHHHHHhhCCHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q psy14684 261 HEYLSQECSRVKS 273 (357)
Q Consensus 261 r~~L~~e~~~LKq 273 (357)
...+...+..+.+
T Consensus 74 l~~l~~~~~~l~~ 86 (87)
T PF08700_consen 74 LSELQQSIQSLQE 86 (87)
T ss_pred HHHHHHHHHHhhc
No 500
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.41 E-value=3.7e+02 Score=30.16 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred CChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 186 IPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 186 FSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
|.+-++..||-+=.++.-.. |++++..+-+-|.+=...|...+ +....++.....++..+++|..+...|.
T Consensus 491 ~~iA~~~Glp~~ii~~A~~~--~~~~~~~~~~li~~l~~~~~~~e-------~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 491 FEIAKRLGLPENIIEEAKKL--IGEDKEKLNELIASLEELERELE-------QKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHhCcCHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q psy14684 266 QECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 266 ~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.+..++.++...-++++....+
T Consensus 562 ~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 562 EEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Done!