Query psy14684
Match_columns 357
No_of_seqs 185 out of 333
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 18:03:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lz1_A Nuclear factor erythroi 100.0 8.7E-35 3E-39 236.2 1.6 74 167-240 16-89 (90)
2 2kz5_A Transcription factor NF 100.0 2.2E-34 7.5E-39 234.1 2.0 75 167-241 16-90 (91)
3 1skn_P DNA-binding domain of S 100.0 1.7E-32 6E-37 223.2 6.8 78 168-245 13-90 (92)
4 3a5t_A Transcription factor MA 99.9 3.5E-30 1.2E-34 215.5 -2.6 99 182-282 4-102 (107)
5 2wt7_B Transcription factor MA 99.9 2.1E-27 7.3E-32 193.6 9.0 89 189-279 1-89 (90)
6 2wt7_A Proto-oncogene protein 99.4 7E-13 2.4E-17 100.6 8.8 60 217-276 2-61 (63)
7 1jnm_A Proto-oncogene C-JUN; B 99.4 4.5E-13 1.5E-17 101.1 5.4 59 218-276 2-60 (62)
8 1t2k_D Cyclic-AMP-dependent tr 99.3 4.5E-12 1.6E-16 95.2 7.7 58 218-275 2-59 (61)
9 1ci6_A Transcription factor AT 99.2 7.9E-11 2.7E-15 89.6 8.1 61 216-276 1-61 (63)
10 2dgc_A Protein (GCN4); basic d 98.9 6.9E-10 2.4E-14 84.7 5.2 51 218-268 10-60 (63)
11 1dh3_A Transcription factor CR 98.8 2.9E-09 1E-13 79.3 4.0 51 217-267 1-51 (55)
12 1hjb_A Ccaat/enhancer binding 98.6 6.6E-08 2.2E-12 78.3 7.7 66 218-283 16-81 (87)
13 1gu4_A CAAT/enhancer binding p 98.6 6.1E-08 2.1E-12 77.1 6.0 59 219-277 17-75 (78)
14 1gd2_E Transcription factor PA 98.0 8.9E-06 3.1E-10 63.5 6.6 60 219-278 10-69 (70)
15 3lay_A Zinc resistance-associa 95.2 0.088 3E-06 47.1 9.2 75 206-294 66-147 (175)
16 2jee_A YIIU; FTSZ, septum, coi 93.5 0.28 9.7E-06 39.3 7.6 43 237-279 19-61 (81)
17 2c9l_Y EB1, zebra, BZLF1 trans 93.3 0.21 7.2E-06 37.9 6.2 24 219-242 3-26 (63)
18 2yy0_A C-MYC-binding protein; 91.3 0.28 9.6E-06 36.2 4.7 32 245-276 19-50 (53)
19 3m91_A Proteasome-associated A 89.9 1.2 4.1E-05 32.8 7.0 42 237-278 8-49 (51)
20 2oqq_A Transcription factor HY 89.9 1 3.5E-05 32.3 6.3 38 239-276 4-41 (42)
21 2oxj_A Hybrid alpha/beta pepti 89.6 0.41 1.4E-05 32.9 4.0 28 239-266 2-29 (34)
22 3m48_A General control protein 89.6 0.4 1.4E-05 32.8 3.9 27 240-266 2-28 (33)
23 1kd8_B GABH BLL, GCN4 acid bas 89.4 0.7 2.4E-05 32.1 5.0 31 239-269 2-32 (36)
24 1kd8_A GABH AIV, GCN4 acid bas 89.1 0.45 1.5E-05 33.1 3.9 31 239-269 2-32 (36)
25 3c3f_A Alpha/beta peptide with 87.5 0.69 2.4E-05 31.8 4.0 28 239-266 2-29 (34)
26 3itf_A Periplasmic adaptor pro 86.6 4 0.00014 35.3 9.3 59 201-261 39-104 (145)
27 1nkp_B MAX protein, MYC proto- 86.2 0.91 3.1E-05 35.1 4.6 31 248-278 50-80 (83)
28 1nlw_A MAD protein, MAX dimeri 86.2 1.2 4.1E-05 34.9 5.3 33 238-277 47-79 (80)
29 3s9g_A Protein hexim1; cyclin 85.6 1.6 5.6E-05 36.4 6.0 30 237-266 64-93 (104)
30 3c3g_A Alpha/beta peptide with 85.4 1 3.6E-05 30.7 4.0 27 240-266 2-28 (33)
31 1wle_A Seryl-tRNA synthetase; 85.4 3.5 0.00012 41.9 9.7 29 248-276 119-147 (501)
32 1nkp_A C-MYC, MYC proto-oncoge 85.4 1.5 5.3E-05 34.7 5.7 34 237-270 51-84 (88)
33 2bni_A General control protein 85.2 0.99 3.4E-05 31.0 3.8 28 239-266 2-29 (34)
34 1nlw_A MAD protein, MAX dimeri 85.1 2 6.7E-05 33.7 6.1 26 257-282 52-77 (80)
35 3mq7_A Bone marrow stromal ant 84.7 3.8 0.00013 35.1 8.0 36 207-249 33-68 (121)
36 1uo4_A General control protein 84.5 1.1 3.8E-05 30.8 3.8 28 239-266 2-29 (34)
37 3m9b_A Proteasome-associated A 83.7 1.4 4.6E-05 41.8 5.4 44 237-280 53-96 (251)
38 3efg_A Protein SLYX homolog; x 83.6 3.3 0.00011 32.5 6.8 45 238-282 14-58 (78)
39 2p22_C Protein SRN2; endosome, 83.5 2.3 7.8E-05 38.4 6.6 23 183-206 28-50 (192)
40 2hy6_A General control protein 83.4 1.7 5.8E-05 29.9 4.3 29 239-267 2-30 (34)
41 2wq1_A General control protein 83.3 1.5 5E-05 30.0 4.0 27 240-266 2-28 (33)
42 3o0z_A RHO-associated protein 83.0 11 0.00037 33.8 10.7 47 233-279 85-131 (168)
43 1t2k_D Cyclic-AMP-dependent tr 82.9 3.8 0.00013 30.1 6.5 39 245-283 22-60 (61)
44 2wt7_A Proto-oncogene protein 82.7 4 0.00014 30.4 6.6 39 245-283 23-61 (63)
45 3oja_B Anopheles plasmodium-re 82.6 9.3 0.00032 37.6 11.1 8 286-293 578-585 (597)
46 2jee_A YIIU; FTSZ, septum, coi 82.6 5.6 0.00019 31.8 7.8 42 241-282 37-78 (81)
47 1nkp_B MAX protein, MYC proto- 82.4 2.9 9.8E-05 32.3 6.0 35 237-271 46-80 (83)
48 2v4h_A NF-kappa-B essential mo 82.1 7.2 0.00025 32.9 8.6 50 233-282 57-106 (110)
49 3w03_C DNA repair protein XRCC 81.2 1.8 6.1E-05 39.2 5.0 41 236-276 143-183 (184)
50 3lss_A Seryl-tRNA synthetase; 80.7 2.1 7E-05 43.6 5.8 47 227-273 21-72 (484)
51 1jnm_A Proto-oncogene C-JUN; B 79.6 2.2 7.5E-05 31.6 4.2 39 245-283 22-60 (62)
52 3oja_A Leucine-rich immune mol 79.1 4.3 0.00015 39.3 7.3 43 239-281 436-478 (487)
53 3gpv_A Transcriptional regulat 78.7 13 0.00044 31.3 9.3 36 247-283 97-132 (148)
54 1lwu_C Fibrinogen gamma chain; 78.1 5.6 0.00019 38.5 7.7 52 230-282 5-56 (323)
55 3hnw_A Uncharacterized protein 78.0 7.8 0.00027 33.2 7.8 41 239-279 90-130 (138)
56 3mq9_A Bone marrow stromal ant 77.8 7.9 0.00027 37.3 8.7 51 228-278 419-469 (471)
57 4dzn_A Coiled-coil peptide CC- 77.7 5.4 0.00019 26.7 5.2 28 246-273 3-30 (33)
58 3u06_A Protein claret segregat 77.6 5 0.00017 39.7 7.4 36 240-275 5-40 (412)
59 3mq7_A Bone marrow stromal ant 77.0 16 0.00056 31.2 9.3 53 218-276 57-109 (121)
60 2yy0_A C-MYC-binding protein; 76.8 4.9 0.00017 29.5 5.3 31 252-282 19-49 (53)
61 1nkp_A C-MYC, MYC proto-oncoge 76.4 9.2 0.00032 30.2 7.3 44 236-279 40-86 (88)
62 3m91_A Proteasome-associated A 76.3 9.4 0.00032 28.0 6.7 40 244-283 8-47 (51)
63 3nmd_A CGMP dependent protein 76.3 4.8 0.00016 31.7 5.4 9 196-204 21-29 (72)
64 3qne_A Seryl-tRNA synthetase, 76.1 3.7 0.00013 41.7 6.1 20 262-281 81-100 (485)
65 2xdj_A Uncharacterized protein 75.9 10 0.00035 30.1 7.4 48 240-287 22-69 (83)
66 4etp_A Kinesin-like protein KA 75.9 2.6 8.9E-05 41.4 4.8 36 240-275 5-40 (403)
67 4h22_A Leucine-rich repeat fli 75.4 12 0.00043 31.1 8.0 46 238-283 37-82 (103)
68 2r2v_A GCN4 leucine zipper; co 75.3 4 0.00014 28.0 4.1 29 239-267 2-30 (34)
69 3he5_A Synzip1; heterodimeric 75.3 15 0.00051 26.5 7.3 36 240-275 5-47 (49)
70 1ci6_A Transcription factor AT 75.0 9.6 0.00033 28.4 6.7 35 246-280 24-58 (63)
71 2w6b_A RHO guanine nucleotide 74.4 20 0.0007 26.9 8.1 45 236-284 8-52 (56)
72 2dgc_A Protein (GCN4); basic d 73.9 4.5 0.00015 30.4 4.6 32 245-276 30-61 (63)
73 3oeo_A Spheroplast protein Y; 73.8 2.8 9.4E-05 35.6 3.8 90 201-292 27-132 (138)
74 3iv1_A Tumor susceptibility ge 73.7 20 0.00068 28.5 8.5 58 219-279 12-73 (78)
75 3hnw_A Uncharacterized protein 73.4 13 0.00046 31.7 8.0 45 239-283 83-127 (138)
76 2zqm_A Prefoldin beta subunit 73.1 13 0.00044 29.4 7.4 44 236-279 68-111 (117)
77 3gp4_A Transcriptional regulat 73.1 20 0.0007 30.0 9.0 16 202-217 54-69 (142)
78 1deb_A APC protein, adenomatou 72.9 9.9 0.00034 28.3 6.1 25 241-265 6-30 (54)
79 1fxk_C Protein (prefoldin); ar 72.4 14 0.00046 30.3 7.6 49 234-282 84-132 (133)
80 1kd8_B GABH BLL, GCN4 acid bas 71.1 10 0.00034 26.4 5.3 32 246-277 2-33 (36)
81 4b4t_K 26S protease regulatory 71.0 7.2 0.00025 38.6 6.6 42 238-279 49-90 (428)
82 3s4r_A Vimentin; alpha-helix, 70.9 7.9 0.00027 31.0 5.7 36 244-279 55-90 (93)
83 3oja_B Anopheles plasmodium-re 69.8 14 0.00047 36.4 8.3 42 240-281 539-580 (597)
84 1go4_E MAD1 (mitotic arrest de 69.1 8.9 0.0003 31.7 5.7 32 246-277 13-44 (100)
85 1go4_E MAD1 (mitotic arrest de 69.0 8.6 0.00029 31.8 5.6 19 240-258 21-39 (100)
86 3he5_B Synzip2; heterodimeric 68.6 19 0.00066 26.2 6.7 40 246-285 11-50 (52)
87 3u5c_P 40S ribosomal protein S 67.7 2 6.9E-05 37.6 1.7 37 186-222 20-63 (142)
88 3w03_C DNA repair protein XRCC 67.6 12 0.00039 33.9 6.6 33 237-269 151-183 (184)
89 3swy_A Cyclic nucleotide-gated 66.6 20 0.00069 25.9 6.4 40 239-281 6-45 (46)
90 3ra3_B P2F; coiled coil domain 66.3 4.8 0.00016 26.2 2.8 25 248-272 3-27 (28)
91 1deb_A APC protein, adenomatou 66.1 18 0.00061 27.0 6.2 37 247-283 5-41 (54)
92 3swk_A Vimentin; cytoskeleton, 65.4 12 0.00042 29.5 5.7 14 239-252 22-35 (86)
93 1gd2_E Transcription factor PA 65.2 13 0.00045 28.7 5.7 37 245-281 29-65 (70)
94 3a7o_A Autophagy protein 16; c 64.8 17 0.00057 28.8 6.2 46 235-280 29-74 (75)
95 3ghg_A Fibrinogen alpha chain; 64.8 25 0.00084 36.7 9.1 42 242-283 114-155 (562)
96 1ses_A Seryl-tRNA synthetase; 64.7 15 0.00051 36.2 7.4 28 249-276 68-95 (421)
97 1hjb_A Ccaat/enhancer binding 64.3 15 0.00052 29.4 6.1 38 249-287 40-77 (87)
98 1a93_A Coiled coil, LZ, MYC pr 64.2 10 0.00035 26.0 4.2 29 250-278 5-33 (34)
99 4dzn_A Coiled-coil peptide CC- 63.4 15 0.00051 24.6 4.8 29 253-281 3-31 (33)
100 2oxj_A Hybrid alpha/beta pepti 63.4 16 0.00053 25.1 5.0 29 247-275 3-31 (34)
101 1kd8_A GABH AIV, GCN4 acid bas 62.0 10 0.00035 26.3 4.0 30 247-276 3-32 (36)
102 4etp_A Kinesin-like protein KA 61.7 22 0.00075 34.9 7.9 44 238-281 10-53 (403)
103 3q8t_A Beclin-1; autophagy, AT 61.5 33 0.0011 27.6 7.6 43 239-281 26-68 (96)
104 3c3g_A Alpha/beta peptide with 61.3 18 0.00062 24.7 5.0 30 247-276 2-31 (33)
105 1fxk_A Prefoldin; archaeal pro 61.3 12 0.00043 29.1 5.0 40 237-276 64-103 (107)
106 3ol1_A Vimentin; structural ge 61.1 23 0.00078 29.3 6.8 58 213-273 19-76 (119)
107 1jcd_A Major outer membrane li 60.8 47 0.0016 24.4 7.6 37 239-275 5-41 (52)
108 2dq0_A Seryl-tRNA synthetase; 60.5 35 0.0012 34.0 9.2 9 270-278 87-95 (455)
109 3qh9_A Liprin-beta-2; coiled-c 59.7 48 0.0017 26.6 8.1 43 241-283 22-64 (81)
110 2xus_A Breast cancer metastasi 59.6 21 0.00073 26.1 5.5 41 231-271 3-44 (49)
111 1fzc_C Fibrin; blood coagulati 59.5 5 0.00017 38.8 2.9 45 237-281 3-47 (319)
112 3q4f_C DNA repair protein XRCC 59.3 9.2 0.00031 34.8 4.4 26 237-262 160-185 (186)
113 3u1c_A Tropomyosin alpha-1 cha 59.0 40 0.0014 27.1 7.8 30 243-272 42-71 (101)
114 3c3f_A Alpha/beta peptide with 58.9 21 0.00071 24.5 5.0 30 247-276 3-32 (34)
115 3u06_A Protein claret segregat 58.7 28 0.00097 34.3 8.2 50 239-288 18-69 (412)
116 3m9b_A Proteasome-associated A 58.3 11 0.00039 35.5 5.0 43 244-287 53-95 (251)
117 1fmh_A General control protein 58.2 20 0.00068 24.0 4.7 27 241-267 4-30 (33)
118 3o39_A Periplasmic protein rel 58.0 25 0.00087 28.9 6.5 23 203-225 13-35 (108)
119 3s4r_A Vimentin; alpha-helix, 57.8 60 0.0021 25.9 8.5 39 237-275 55-93 (93)
120 1dh3_A Transcription factor CR 57.8 42 0.0014 24.4 7.0 30 253-282 23-52 (55)
121 2w6b_A RHO guanine nucleotide 57.1 52 0.0018 24.7 7.4 32 242-273 7-38 (56)
122 3gp4_A Transcriptional regulat 56.8 85 0.0029 26.1 11.4 6 186-191 60-65 (142)
123 1l8d_A DNA double-strand break 56.2 30 0.001 27.3 6.5 40 237-276 63-102 (112)
124 3hh0_A Transcriptional regulat 56.1 21 0.00071 30.1 5.9 30 247-276 82-111 (146)
125 3htk_A Structural maintenance 55.9 52 0.0018 23.4 7.8 33 246-278 20-52 (60)
126 1l8d_A DNA double-strand break 55.7 34 0.0012 27.0 6.8 39 240-278 5-43 (112)
127 3m48_A General control protein 55.7 13 0.00044 25.4 3.5 29 247-275 2-30 (33)
128 2fxo_A Myosin heavy chain, car 55.5 34 0.0012 28.4 7.0 40 239-278 84-123 (129)
129 2xdj_A Uncharacterized protein 55.4 34 0.0012 27.1 6.6 37 237-273 26-62 (83)
130 1am9_A Srebp-1A, protein (ster 54.8 20 0.00067 27.8 5.1 17 239-255 51-67 (82)
131 3swf_A CGMP-gated cation chann 54.4 38 0.0013 26.7 6.6 43 238-283 7-49 (74)
132 1m1j_C Fibrinogen gamma chain; 53.7 48 0.0016 33.0 8.9 46 235-280 88-133 (409)
133 1gu4_A CAAT/enhancer binding p 53.3 24 0.00082 27.7 5.3 30 250-279 41-70 (78)
134 4e61_A Protein BIM1; EB1-like 53.2 22 0.00075 29.7 5.3 33 250-282 23-58 (106)
135 2wq1_A General control protein 52.9 30 0.001 23.6 5.0 29 247-275 2-30 (33)
136 2zqm_A Prefoldin beta subunit 52.9 45 0.0015 26.2 7.1 44 245-288 70-113 (117)
137 2dfs_A Myosin-5A; myosin-V, in 52.2 59 0.002 35.9 10.1 29 239-267 985-1013(1080)
138 1joc_A EEA1, early endosomal a 51.8 53 0.0018 27.2 7.6 39 237-275 10-48 (125)
139 2hy6_A General control protein 51.6 24 0.00083 24.2 4.4 30 247-276 3-32 (34)
140 2w83_C C-JUN-amino-terminal ki 51.5 29 0.00098 27.6 5.5 41 241-281 33-73 (77)
141 2lw9_A Unconventionnal myosin- 51.4 37 0.0013 25.1 5.6 24 235-258 3-26 (51)
142 4h22_A Leucine-rich repeat fli 51.2 56 0.0019 27.2 7.5 47 237-283 29-75 (103)
143 2ve7_C Kinetochore protein NUF 50.4 21 0.0007 33.1 5.3 98 177-283 99-200 (250)
144 3he4_A Synzip6; heterodimeric 50.4 19 0.00066 26.5 4.0 45 223-273 8-52 (56)
145 2wt7_B Transcription factor MA 50.0 44 0.0015 27.1 6.5 32 246-277 49-80 (90)
146 3tnu_A Keratin, type I cytoske 49.7 1E+02 0.0035 25.4 9.1 65 211-275 52-121 (131)
147 3ol1_A Vimentin; structural ge 49.6 1.1E+02 0.0037 25.2 10.4 34 242-275 66-99 (119)
148 2akf_A Coronin-1A; coiled coil 49.4 23 0.0008 23.7 4.0 25 242-266 3-27 (32)
149 2bni_A General control protein 49.3 24 0.00081 24.2 4.1 30 247-276 3-32 (34)
150 1ses_A Seryl-tRNA synthetase; 49.2 72 0.0025 31.3 9.3 33 253-285 65-97 (421)
151 3q8t_A Beclin-1; autophagy, AT 49.2 78 0.0027 25.3 7.9 21 208-228 16-36 (96)
152 1uii_A Geminin; human, DNA rep 48.8 71 0.0024 25.7 7.5 27 248-274 49-75 (83)
153 2ke4_A CDC42-interacting prote 48.8 57 0.002 26.4 7.1 20 239-258 23-42 (98)
154 3q0x_A Centriole protein; cent 48.5 71 0.0024 29.6 8.6 56 228-283 168-223 (228)
155 3l4f_A RHO guanine nucleotide 48.4 89 0.003 23.8 7.6 48 237-288 6-53 (61)
156 2v66_B Nuclear distribution pr 48.3 38 0.0013 28.3 6.1 36 239-274 36-71 (111)
157 1ic2_A Tropomyosin alpha chain 48.1 87 0.003 24.0 7.8 14 244-257 40-53 (81)
158 1fxk_A Prefoldin; archaeal pro 48.0 60 0.002 25.1 7.0 42 245-286 65-106 (107)
159 1i84_S Smooth muscle myosin he 47.8 63 0.0022 35.6 9.4 10 34-43 555-564 (1184)
160 1r8d_A Transcription activator 47.5 70 0.0024 25.0 7.4 26 249-274 79-104 (109)
161 1wle_A Seryl-tRNA synthetase; 47.3 1.4E+02 0.0046 30.4 11.1 33 253-285 117-149 (501)
162 3swf_A CGMP-gated cation chann 47.2 90 0.0031 24.6 7.7 46 242-287 4-49 (74)
163 3nmd_A CGMP dependent protein 47.2 82 0.0028 24.6 7.4 32 237-268 32-63 (72)
164 3i00_A HIP-I, huntingtin-inter 47.1 65 0.0022 27.1 7.4 39 240-278 42-80 (120)
165 3cve_A Homer protein homolog 1 47.1 1E+02 0.0034 24.1 8.0 27 239-265 22-48 (72)
166 2zdi_C Prefoldin subunit alpha 47.1 50 0.0017 27.7 6.8 46 236-281 96-141 (151)
167 1uo4_A General control protein 46.9 31 0.001 23.7 4.3 29 247-275 3-31 (34)
168 3efg_A Protein SLYX homolog; x 46.5 31 0.0011 26.9 5.0 43 239-281 22-64 (78)
169 1zvu_A Topoisomerase IV subuni 46.5 35 0.0012 36.5 7.0 51 197-258 372-422 (716)
170 2dq3_A Seryl-tRNA synthetase; 46.3 22 0.00075 35.0 5.1 24 238-261 30-53 (425)
171 2efr_A General control protein 46.1 1.5E+02 0.0052 25.9 10.8 45 239-283 106-150 (155)
172 1ik9_A DNA repair protein XRCC 45.9 69 0.0024 29.1 8.0 12 271-282 187-198 (213)
173 3cvf_A Homer-3, homer protein 45.6 89 0.003 24.7 7.5 28 239-266 28-55 (79)
174 2inr_A DNA topoisomerase 4 sub 45.6 58 0.002 33.5 8.2 33 188-220 409-447 (514)
175 2veb_A Protoglobin; hemoprotei 45.4 53 0.0018 29.8 7.1 27 194-220 20-46 (195)
176 3a7p_A Autophagy protein 16; c 45.2 84 0.0029 27.7 8.1 36 240-275 98-133 (152)
177 3vbb_A Seryl-tRNA synthetase, 44.9 46 0.0016 34.2 7.3 37 237-273 33-69 (522)
178 3plt_A Sphingolipid long chain 44.9 1.9E+02 0.0064 27.1 10.8 7 188-194 61-67 (234)
179 3s9g_A Protein hexim1; cyclin 44.8 88 0.003 26.1 7.6 27 245-271 65-91 (104)
180 2l5g_A GPS2 protein, G protein 44.7 23 0.00079 24.8 3.5 17 239-255 16-32 (38)
181 1a93_B MAX protein, coiled coi 44.6 33 0.0011 23.5 4.2 21 241-261 10-30 (34)
182 4dk0_A Putative MACA; alpha-ha 44.6 1E+02 0.0035 28.1 9.1 26 253-278 123-148 (369)
183 3tnu_B Keratin, type II cytosk 44.5 1.3E+02 0.0045 24.7 10.7 33 239-271 83-115 (129)
184 2wuj_A Septum site-determining 44.3 20 0.00067 26.3 3.4 19 255-273 37-55 (57)
185 1gmj_A ATPase inhibitor; coile 44.3 1.2E+02 0.0042 24.3 8.9 27 253-279 52-78 (84)
186 2r2v_A GCN4 leucine zipper; co 44.1 54 0.0018 22.5 5.2 30 247-276 3-32 (34)
187 4emc_A Monopolin complex subun 44.0 63 0.0022 29.5 7.3 19 297-315 116-138 (190)
188 3ra3_A P1C; coiled coil domain 44.0 11 0.00039 24.4 1.7 19 260-278 8-26 (28)
189 1hlo_A Protein (transcription 43.9 16 0.00053 28.0 2.9 23 237-259 56-78 (80)
190 3o0z_A RHO-associated protein 43.8 1.3E+02 0.0045 26.8 9.2 48 212-265 77-124 (168)
191 2xv5_A Lamin-A/C; structural p 43.4 98 0.0034 23.9 7.4 50 233-283 7-56 (74)
192 1lwu_C Fibrinogen gamma chain; 42.9 60 0.0021 31.4 7.5 33 243-275 24-56 (323)
193 2l5g_B Putative uncharacterize 42.1 46 0.0016 23.7 4.8 32 249-280 6-37 (42)
194 2w6a_A ARF GTPase-activating p 41.9 64 0.0022 24.7 5.9 41 224-264 19-60 (63)
195 3lf9_A 4E10_D0_1IS1A_001_C (T1 41.9 1.6E+02 0.0056 25.1 10.5 66 193-258 14-92 (121)
196 3i00_A HIP-I, huntingtin-inter 41.9 1.5E+02 0.0053 24.7 10.3 45 228-272 37-81 (120)
197 2xv5_A Lamin-A/C; structural p 41.9 76 0.0026 24.6 6.5 43 241-283 8-50 (74)
198 1gmj_A ATPase inhibitor; coile 41.7 78 0.0027 25.4 6.7 30 244-273 50-79 (84)
199 3a7p_A Autophagy protein 16; c 41.6 93 0.0032 27.4 7.8 43 237-279 81-123 (152)
200 3u59_A Tropomyosin beta chain; 41.6 1.3E+02 0.0044 23.8 8.1 27 243-269 42-68 (101)
201 1t6f_A Geminin; coiled-coil, c 41.5 48 0.0016 23.1 4.7 28 251-278 6-33 (37)
202 1a93_B MAX protein, coiled coi 41.4 30 0.001 23.7 3.6 28 250-277 5-32 (34)
203 2wvr_A Geminin; DNA replicatio 41.4 44 0.0015 30.9 5.9 29 237-265 114-142 (209)
204 2wuj_A Septum site-determining 41.3 26 0.00089 25.6 3.6 28 240-267 29-56 (57)
205 3ghg_C Fibrinogen gamma chain; 41.2 89 0.0031 31.3 8.6 54 228-281 81-134 (411)
206 1gk6_A Vimentin; intermediate 41.1 1E+02 0.0034 22.6 6.8 45 238-283 7-51 (59)
207 3ilw_A DNA gyrase subunit A; D 41.0 61 0.0021 33.1 7.4 22 199-220 388-409 (470)
208 2eqb_B RAB guanine nucleotide 40.5 1.2E+02 0.0041 24.9 7.8 25 259-283 40-64 (97)
209 3oa7_A Head morphogenesis prot 40.2 64 0.0022 29.8 6.7 58 222-282 17-74 (206)
210 3trt_A Vimentin; cytoskeleton, 40.2 1.1E+02 0.0039 22.7 7.6 52 223-277 23-74 (77)
211 1x79_B RAB GTPase binding effe 40.1 1.6E+02 0.0056 24.6 10.3 84 196-284 8-91 (112)
212 2xv9_A ABA-1A1 repeat UNIT; li 39.8 1.3E+02 0.0045 25.8 8.3 46 198-248 13-58 (134)
213 3ku8_A GYRA14, DNA gyrase subu 39.6 15 0.0005 32.4 2.4 16 205-220 106-121 (156)
214 4akg_A Glutathione S-transfera 39.0 37 0.0013 41.2 6.3 7 10-16 1212-1218(2695)
215 2xkj_E Topoisomerase IV; type 39.0 42 0.0014 36.2 6.2 23 198-220 667-689 (767)
216 2dq0_A Seryl-tRNA synthetase; 38.3 89 0.0031 31.1 8.1 35 246-280 70-104 (455)
217 1m5y_A SurviVal protein, survi 38.2 77 0.0026 29.5 7.3 38 177-214 62-109 (408)
218 3aon_A V-type sodium ATPase su 38.1 1E+02 0.0035 27.6 7.8 40 247-286 33-72 (217)
219 3a2a_A Voltage-gated hydrogen 38.1 68 0.0023 24.2 5.4 36 244-279 10-45 (58)
220 2w83_C C-JUN-amino-terminal ki 38.0 44 0.0015 26.6 4.6 36 239-274 38-73 (77)
221 2v71_A Nuclear distribution pr 38.0 2.3E+02 0.0078 25.6 10.5 33 239-271 89-121 (189)
222 1wt6_A Myotonin-protein kinase 37.9 85 0.0029 25.1 6.3 29 242-270 42-70 (81)
223 3rrk_A V-type ATPase 116 kDa s 37.9 64 0.0022 30.0 6.6 39 240-278 94-135 (357)
224 1yzm_A FYVE-finger-containing 37.8 48 0.0016 24.4 4.5 27 234-260 24-50 (51)
225 3ra3_A P1C; coiled coil domain 37.8 36 0.0012 22.1 3.4 23 250-272 5-27 (28)
226 2oqq_A Transcription factor HY 37.6 79 0.0027 22.6 5.4 26 241-266 13-38 (42)
227 2p22_A Suppressor protein STP2 37.5 1.2E+02 0.0042 27.0 8.0 38 241-278 52-89 (174)
228 1g6u_A Domain swapped dimer; d 37.5 1.1E+02 0.0038 21.9 6.6 23 256-278 24-46 (48)
229 2w6a_A ARF GTPase-activating p 37.3 1.4E+02 0.0047 22.9 7.6 41 241-281 16-56 (63)
230 3vem_A Helicase protein MOM1; 37.3 1.3E+02 0.0043 25.5 7.6 46 235-283 58-103 (115)
231 3htk_A Structural maintenance 37.1 1.1E+02 0.0037 21.7 8.1 39 239-277 6-44 (60)
232 2lw1_A ABC transporter ATP-bin 37.1 1.2E+02 0.0041 23.4 7.1 20 262-281 59-78 (89)
233 2fxo_A Myosin heavy chain, car 37.1 1.6E+02 0.0053 24.3 8.2 46 238-283 76-121 (129)
234 1use_A VAsp, vasodilator-stimu 37.0 81 0.0028 22.8 5.5 24 253-276 8-32 (45)
235 2aze_B Transcription factor E2 36.9 53 0.0018 26.8 5.2 37 245-281 6-42 (106)
236 3kyp_A Pfnaps, nucleosome asse 36.7 55 0.0019 29.0 5.7 17 237-253 2-18 (193)
237 2yko_A LINE-1 ORF1P; RNA-bindi 36.7 73 0.0025 29.8 6.7 35 239-273 14-48 (233)
238 3rgc_A Possible periplasmic pr 36.4 45 0.0015 29.4 5.1 38 177-214 43-90 (252)
239 1x8y_A Lamin A/C; structural p 36.4 1.3E+02 0.0045 23.4 7.3 38 238-275 35-72 (86)
240 4b4t_J 26S protease regulatory 36.0 50 0.0017 32.6 5.8 43 237-279 24-66 (405)
241 1dip_A Delta-sleep-inducing pe 36.0 36 0.0012 27.1 3.9 30 245-274 15-44 (78)
242 2cwo_A P21, RNA silencing supp 36.0 25 0.00084 31.2 3.2 36 169-205 31-69 (197)
243 1ykh_B RNA polymerase II holoe 35.9 72 0.0025 26.8 6.1 32 250-281 97-128 (132)
244 3jsv_C NF-kappa-B essential mo 35.9 96 0.0033 25.4 6.5 45 237-281 39-83 (94)
245 2wvr_A Geminin; DNA replicatio 35.8 1.1E+02 0.0036 28.4 7.5 29 246-274 116-144 (209)
246 4b4t_M 26S protease regulatory 35.7 36 0.0012 33.8 4.8 37 242-278 36-72 (434)
247 1t3j_A Mitofusin 1; coiled coi 35.6 1.1E+02 0.0039 24.9 6.9 35 240-278 49-83 (96)
248 2c5k_T Syntaxin TLG1, T-snare 35.4 94 0.0032 24.8 6.4 85 193-281 2-90 (95)
249 3gpv_A Transcriptional regulat 35.4 1.8E+02 0.0061 24.2 8.4 33 242-274 99-131 (148)
250 3mud_A DNA repair protein XRCC 35.0 1.3E+02 0.0044 27.0 7.8 29 244-272 134-162 (175)
251 3lpx_A GYRA, DNA gyrase, A sub 35.0 52 0.0018 33.9 5.9 16 205-220 417-432 (500)
252 1a93_A Coiled coil, LZ, MYC pr 34.8 58 0.002 22.2 4.2 30 242-271 4-33 (34)
253 3vkg_A Dynein heavy chain, cyt 34.7 1.2E+02 0.0041 37.7 9.7 49 228-276 2025-2073(3245)
254 1ic2_A Tropomyosin alpha chain 34.5 1.5E+02 0.0052 22.6 7.3 39 239-277 21-59 (81)
255 2zdi_C Prefoldin subunit alpha 34.4 38 0.0013 28.4 4.1 38 242-279 6-46 (151)
256 1yke_B RNA polymerase II holoe 34.3 76 0.0026 27.5 6.1 35 249-283 96-130 (151)
257 1z0k_B FYVE-finger-containing 34.1 39 0.0013 26.2 3.7 27 234-260 42-68 (69)
258 2ve7_C Kinetochore protein NUF 33.9 22 0.00075 32.9 2.7 44 232-275 135-178 (250)
259 3cvf_A Homer-3, homer protein 33.8 1.7E+02 0.006 23.0 7.6 34 241-274 23-56 (79)
260 1deq_A Fibrinogen (alpha chain 33.7 2.2E+02 0.0074 28.6 9.8 27 237-263 133-159 (390)
261 1i84_S Smooth muscle myosin he 33.7 45 0.0015 36.7 5.5 9 211-219 871-879 (1184)
262 1ykh_B RNA polymerase II holoe 33.6 79 0.0027 26.6 5.9 34 239-272 93-126 (132)
263 3he5_A Synzip1; heterodimeric 33.4 1.2E+02 0.0041 21.8 5.9 20 248-267 6-25 (49)
264 3u1c_A Tropomyosin alpha-1 cha 33.4 1.8E+02 0.0063 23.1 7.9 37 239-275 24-60 (101)
265 1uii_A Geminin; human, DNA rep 33.0 1.2E+02 0.004 24.4 6.4 26 252-277 46-71 (83)
266 3a2a_A Voltage-gated hydrogen 32.9 1.2E+02 0.0041 22.9 6.0 11 209-219 9-19 (58)
267 2qyw_A Vesicle transport throu 32.8 1.9E+02 0.0064 23.1 9.0 22 260-281 79-100 (102)
268 3kqg_A Langerin, C-type lectin 32.7 73 0.0025 26.2 5.6 25 235-259 13-37 (182)
269 4e61_A Protein BIM1; EB1-like 32.7 2.1E+02 0.0072 23.8 8.2 33 237-269 17-49 (106)
270 1jcd_A Major outer membrane li 32.6 1.5E+02 0.005 21.7 6.5 37 239-275 12-48 (52)
271 1yke_B RNA polymerase II holoe 32.6 81 0.0028 27.3 5.9 34 239-272 93-126 (151)
272 3ppm_A Fatty-acid amide hydrol 32.5 37 0.0013 34.8 4.4 37 178-214 55-91 (573)
273 3okq_A BUD site selection prot 32.2 2.5E+02 0.0085 24.5 8.9 50 225-274 8-76 (141)
274 3iv1_A Tumor susceptibility ge 32.1 1.9E+02 0.0064 22.9 8.2 48 231-278 11-58 (78)
275 1j1d_B Troponin T, TNT; THIN f 32.0 2.1E+02 0.007 23.6 8.0 60 224-283 26-87 (106)
276 4ath_A MITF, microphthalmia-as 32.0 1.2E+02 0.004 24.3 6.3 23 235-257 36-58 (83)
277 3fs3_A Nucleosome assembly pro 31.8 55 0.0019 32.2 5.3 17 236-252 54-70 (359)
278 3qao_A LMO0526 protein, MERR-l 31.7 1.6E+02 0.0056 26.7 8.2 27 250-276 81-107 (249)
279 3vem_A Helicase protein MOM1; 31.6 1.3E+02 0.0045 25.4 6.8 20 264-283 66-85 (115)
280 2dq3_A Seryl-tRNA synthetase; 31.4 52 0.0018 32.3 5.1 33 248-280 71-103 (425)
281 1wt6_A Myotonin-protein kinase 31.2 2E+02 0.0069 23.0 7.7 43 241-283 27-69 (81)
282 2zvf_A Alanyl-tRNA synthetase; 31.0 83 0.0028 26.2 5.7 26 242-267 29-54 (171)
283 3v86_A De novo design helix; c 30.9 84 0.0029 20.2 4.2 16 243-258 5-20 (27)
284 1q06_A Transcriptional regulat 30.8 2.2E+02 0.0075 23.2 8.9 23 250-272 84-106 (135)
285 3tnu_B Keratin, type II cytosk 30.8 2.2E+02 0.0076 23.3 10.6 30 247-276 77-106 (129)
286 4dzo_A Mitotic spindle assembl 30.5 2.4E+02 0.0081 23.5 8.6 13 263-275 15-27 (123)
287 3cve_A Homer protein homolog 1 30.3 1.9E+02 0.0066 22.4 7.8 34 241-274 17-50 (72)
288 1x8y_A Lamin A/C; structural p 30.3 1.9E+02 0.0066 22.4 7.4 29 247-275 30-58 (86)
289 3plt_A Sphingolipid long chain 30.2 1.6E+02 0.0056 27.4 7.9 19 210-228 103-121 (234)
290 1r8e_A Multidrug-efflux transp 30.0 1.4E+02 0.0047 26.3 7.2 28 250-277 84-111 (278)
291 3q4f_C DNA repair protein XRCC 30.0 75 0.0026 28.9 5.4 32 238-269 154-185 (186)
292 3rmi_A Chorismate mutase prote 29.9 1.3E+02 0.0044 24.5 6.4 36 239-274 13-48 (114)
293 3mtu_E Head morphogenesis prot 29.7 78 0.0027 25.1 4.8 22 239-260 45-66 (77)
294 3vmx_A Voltage-gated hydrogen 29.7 1.6E+02 0.0053 21.5 6.0 35 244-278 3-37 (48)
295 2qih_A Protein USPA1; trimeric 29.6 2E+02 0.007 25.3 7.9 44 240-283 42-85 (157)
296 1u7l_A Vacuolar ATP synthase s 29.4 1.5E+02 0.0052 29.4 8.0 73 243-315 127-201 (392)
297 2j69_A Bacterial dynamin-like 29.3 1E+02 0.0036 31.8 7.1 37 243-279 357-393 (695)
298 1wlq_A Geminin; coiled-coil; 2 29.3 1.2E+02 0.0041 24.3 5.9 21 250-270 43-63 (83)
299 2vz4_A Tipal, HTH-type transcr 29.2 1.4E+02 0.0049 23.3 6.5 25 250-274 79-103 (108)
300 2yko_A LINE-1 ORF1P; RNA-bindi 29.2 1.1E+02 0.0036 28.7 6.5 45 239-283 7-51 (233)
301 3qne_A Seryl-tRNA synthetase, 29.2 2E+02 0.0069 29.2 9.0 34 247-280 73-106 (485)
302 3j20_T 30S ribosomal protein S 29.1 35 0.0012 29.4 3.0 20 186-205 11-30 (132)
303 2zxx_A Geminin; coiled-coil, c 29.0 1.5E+02 0.0052 23.5 6.4 16 245-260 41-56 (79)
304 1wcn_A Transcription elongatio 28.4 45 0.0015 25.1 3.2 41 174-218 18-58 (70)
305 3tnu_A Keratin, type I cytoske 28.2 2.5E+02 0.0085 23.1 10.0 57 222-278 49-110 (131)
306 3viq_B Mating-type switching p 28.1 1.6E+02 0.0054 23.6 6.5 24 242-265 5-28 (85)
307 2y39_A Nickel and cobalt resis 28.0 2.7E+02 0.0093 23.5 9.6 68 202-282 15-86 (118)
308 3ni0_A Bone marrow stromal ant 27.9 2.4E+02 0.0081 23.3 7.6 70 198-279 18-87 (99)
309 1j1d_C Troponin I, TNI; THIN f 27.9 85 0.0029 27.0 5.2 37 238-274 72-108 (133)
310 4abm_A Charged multivesicular 27.7 2E+02 0.0069 22.3 6.9 27 211-239 31-57 (79)
311 3l4f_A RHO guanine nucleotide 27.5 2E+02 0.007 21.8 6.8 46 242-287 4-49 (61)
312 1ybz_A Chorismate mutase; cons 27.5 1.5E+02 0.0052 23.3 6.3 35 240-274 19-53 (91)
313 2fic_A Bridging integrator 1; 27.4 3.1E+02 0.011 23.9 9.1 13 221-233 152-164 (251)
314 2vkl_A RV0948C/MT0975; helical 27.4 1.4E+02 0.0046 23.4 5.9 35 240-274 14-48 (90)
315 4b4t_K 26S protease regulatory 27.3 88 0.003 30.9 5.9 46 241-287 45-90 (428)
316 1g6u_A Domain swapped dimer; d 27.3 1.7E+02 0.0059 20.9 6.2 33 249-281 4-42 (48)
317 2nov_A DNA topoisomerase 4 sub 27.3 54 0.0019 33.6 4.5 19 201-219 404-422 (496)
318 2ve7_A Kinetochore protein HEC 27.3 45 0.0015 31.6 3.7 83 237-321 184-284 (315)
319 1j1d_C Troponin I, TNI; THIN f 27.2 2.5E+02 0.0087 24.0 8.0 63 221-283 39-103 (133)
320 1fxk_C Protein (prefoldin); ar 26.9 1.7E+02 0.0057 23.7 6.6 39 240-278 3-41 (133)
321 2wg5_A General control protein 26.8 58 0.002 26.4 3.8 14 301-314 53-66 (109)
322 3a5c_G V-type ATP synthase sub 26.8 1.2E+02 0.004 27.5 6.2 43 245-287 23-65 (223)
323 3zs9_C Golgi to ER traffic pro 26.7 51 0.0017 23.1 2.9 18 207-224 3-20 (38)
324 1am9_A Srebp-1A, protein (ster 26.7 1.8E+02 0.0061 22.3 6.4 36 235-270 37-75 (82)
325 1m1j_B Fibrinogen beta chain; 26.5 2.4E+02 0.0083 28.6 9.0 19 264-282 173-191 (464)
326 2lw1_A ABC transporter ATP-bin 26.3 2.2E+02 0.0076 21.9 7.0 18 257-274 61-78 (89)
327 2fup_A Hypothetical protein PA 26.2 2.6E+02 0.0089 22.6 9.0 6 304-309 140-145 (157)
328 3mov_A Lamin-B1; LMNB1, B-type 26.1 2.5E+02 0.0086 22.4 7.9 37 239-275 45-81 (95)
329 4g2k_A General control protein 26.0 1.7E+02 0.0057 25.1 6.5 29 243-271 19-47 (125)
330 4gkw_A Spindle assembly abnorm 25.9 3.4E+02 0.012 23.8 9.5 31 246-276 47-77 (167)
331 3jsv_C NF-kappa-B essential mo 25.8 58 0.002 26.7 3.6 23 229-251 14-36 (94)
332 2j5u_A MREC protein; bacterial 25.8 29 0.00098 32.0 2.0 14 245-258 26-39 (255)
333 3oja_A Leucine-rich immune mol 25.8 2.1E+02 0.0073 27.4 8.2 30 248-277 438-467 (487)
334 2p22_A Suppressor protein STP2 25.7 1.1E+02 0.0038 27.3 5.7 26 254-279 58-83 (174)
335 1ytz_T Troponin T; muscle, THI 25.7 1.7E+02 0.0058 24.1 6.5 41 238-278 49-89 (107)
336 2xcs_B DNA gyrase subunit B, D 25.6 72 0.0025 34.0 5.2 8 222-229 601-608 (692)
337 3t97_B Nuclear pore complex pr 25.6 1.9E+02 0.0065 22.2 6.2 34 251-284 16-49 (65)
338 3mud_A DNA repair protein XRCC 25.3 1.2E+02 0.0041 27.3 5.8 34 229-262 133-166 (175)
339 2pnv_A Small conductance calci 25.2 90 0.0031 22.1 4.0 29 248-276 12-40 (43)
340 2zxx_A Geminin; coiled-coil, c 25.2 2.4E+02 0.0082 22.3 6.9 28 247-274 36-63 (79)
341 2d8d_A Aroag, phospho-2-dehydr 25.2 1.6E+02 0.0055 22.4 5.9 35 240-274 5-39 (90)
342 1qvr_A CLPB protein; coiled co 24.9 2.1E+02 0.007 30.0 8.5 21 238-258 401-421 (854)
343 2wg5_A General control protein 24.8 62 0.0021 26.3 3.6 23 257-279 12-34 (109)
344 3mq9_A Bone marrow stromal ant 24.8 3.6E+02 0.012 25.7 9.6 32 252-283 436-467 (471)
345 4ani_A Protein GRPE; chaperone 24.7 1.5E+02 0.005 27.1 6.5 12 288-299 162-173 (213)
346 3sja_C Golgi to ER traffic pro 24.6 1.7E+02 0.0059 22.4 5.8 20 264-283 37-56 (65)
347 3kin_B Kinesin heavy chain; mo 24.6 1.1E+02 0.0037 25.2 5.1 21 251-271 95-115 (117)
348 2ayu_A Nucleosome assembly pro 24.2 1.3E+02 0.0046 29.9 6.6 38 236-283 95-132 (417)
349 1zxa_A CGMP-dependent protein 24.2 1.3E+02 0.0044 23.2 5.1 10 266-275 39-48 (67)
350 2er8_A Regulatory protein Leu3 24.0 33 0.0011 24.8 1.6 20 238-257 49-68 (72)
351 3rrk_A V-type ATPase 116 kDa s 23.9 2.2E+02 0.0074 26.4 7.6 33 235-267 223-255 (357)
352 1fmh_A General control protein 23.8 1.1E+02 0.0039 20.4 4.1 25 256-280 5-29 (33)
353 3kin_B Kinesin heavy chain; mo 23.8 20 0.00069 29.6 0.5 29 248-276 85-113 (117)
354 2k48_A Nucleoprotein; viral pr 23.4 3.2E+02 0.011 22.9 7.6 20 260-279 83-102 (107)
355 1r8e_A Multidrug-efflux transp 23.4 3.2E+02 0.011 23.9 8.3 31 242-272 83-113 (278)
356 1ecm_A Endo-oxabicyclic transi 23.2 1.7E+02 0.0059 23.0 5.9 34 240-273 7-40 (109)
357 4ati_A MITF, microphthalmia-as 23.0 51 0.0017 27.2 2.8 35 237-271 73-110 (118)
358 2zvf_A Alanyl-tRNA synthetase; 22.8 1.1E+02 0.0038 25.4 5.0 24 238-261 32-55 (171)
359 1cun_A Protein (alpha spectrin 22.6 3.2E+02 0.011 22.5 12.1 70 214-283 79-170 (213)
360 2ve7_A Kinetochore protein HEC 22.6 1.4E+02 0.0048 28.2 6.1 32 242-273 182-213 (315)
361 2l5g_A GPS2 protein, G protein 22.5 96 0.0033 21.7 3.6 19 246-264 16-34 (38)
362 1m1j_A Fibrinogen alpha subuni 22.5 4.9E+02 0.017 26.8 10.2 44 240-283 113-156 (491)
363 3swk_A Vimentin; cytoskeleton, 22.3 2.8E+02 0.0096 21.6 8.6 54 225-278 26-82 (86)
364 3lhp_S 4E10_D0_1ISEA_004_N (T9 22.3 3E+02 0.01 23.4 7.5 71 168-258 24-102 (123)
365 1x79_B RAB GTPase binding effe 22.3 3.3E+02 0.011 22.7 7.6 37 250-286 43-79 (112)
366 2pih_A Protein YMCA; regulate 22.0 3.6E+02 0.012 22.7 8.0 7 287-293 118-124 (151)
367 2vz4_A Tipal, HTH-type transcr 21.9 1.8E+02 0.0063 22.6 5.8 23 243-265 79-101 (108)
368 3pxg_A Negative regulator of g 21.4 2.1E+02 0.0072 27.7 7.3 42 239-280 395-441 (468)
369 3fb2_A Spectrin alpha chain, b 21.4 3.7E+02 0.013 22.7 8.4 69 215-283 93-183 (218)
370 1wlq_A Geminin; coiled-coil; 2 21.3 3.1E+02 0.011 21.9 7.0 26 239-264 39-64 (83)
371 2e50_A Protein SET; histone ch 21.3 2.5E+02 0.0085 25.4 7.3 18 235-252 30-47 (225)
372 1p9i_A Cortexillin I/GCN4 hybr 21.0 1.3E+02 0.0045 19.8 3.9 17 263-279 10-26 (31)
373 1gk4_A Vimentin; intermediate 20.9 2.9E+02 0.0098 21.2 7.3 43 238-280 19-61 (84)
374 4gkw_A Spindle assembly abnorm 20.9 1.6E+02 0.0054 25.9 5.5 26 238-263 11-36 (167)
375 3ghg_A Fibrinogen alpha chain; 20.8 2.5E+02 0.0084 29.4 7.8 9 275-283 178-186 (562)
376 2dnx_A Syntaxin-12; snare, HAB 20.8 3.5E+02 0.012 22.2 9.9 39 249-287 88-126 (130)
377 2efk_A CDC42-interacting prote 20.7 3.2E+02 0.011 24.1 7.8 31 251-281 115-145 (301)
378 1j1d_B Troponin T, TNT; THIN f 20.6 1.8E+02 0.0063 23.9 5.7 34 238-271 56-89 (106)
379 3qao_A LMO0526 protein, MERR-l 20.6 2.1E+02 0.0073 25.9 6.7 34 241-274 79-112 (249)
380 3vkg_A Dynein heavy chain, cyt 20.5 1.8E+02 0.0062 36.2 7.8 37 242-278 2018-2054(3245)
381 1joc_A EEA1, early endosomal a 20.5 2.5E+02 0.0084 23.1 6.5 18 253-270 19-36 (125)
382 1zhc_A Hypothetical protein HP 20.4 1.6E+02 0.0055 22.5 5.0 17 254-270 46-62 (76)
383 3fpp_A Macrolide-specific effl 20.4 2.5E+02 0.0086 25.3 7.2 17 259-275 128-144 (341)
384 3ibp_A Chromosome partition pr 20.4 1.3E+02 0.0043 29.3 5.3 56 239-294 4-61 (302)
385 2efl_A Formin-binding protein 20.4 3.3E+02 0.011 24.0 7.8 27 255-281 126-152 (305)
386 1zww_A SH3-containing GRB2-lik 20.3 2.3E+02 0.0079 25.3 6.8 38 198-237 138-175 (256)
387 4eah_A Formin-like protein 3, 20.3 5.9E+02 0.02 24.6 10.6 102 175-278 88-205 (402)
388 3thf_A Protein shroom; coiled- 20.1 2.6E+02 0.009 25.4 7.0 46 234-283 15-60 (190)
389 3bas_A Myosin heavy chain, str 20.0 3.1E+02 0.011 21.3 10.3 8 269-276 73-80 (89)
390 3l4q_C Phosphatidylinositol 3- 20.0 3.2E+02 0.011 24.3 7.5 19 193-214 51-69 (170)
391 3sjb_C Golgi to ER traffic pro 20.0 2E+02 0.0069 23.4 5.7 30 250-279 54-83 (93)
No 1
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=236.25 Aligned_cols=74 Identities=66% Similarity=1.003 Sum_probs=71.3
Q ss_pred hhhhhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHH
Q psy14684 167 SEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQI 240 (357)
Q Consensus 167 ~~~~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I 240 (357)
..+..+||||+||++++||||+||||||||+|||+||++++||++|+++|||||||||||+|||||||||+|.|
T Consensus 16 ~~~~~~srDE~ra~~~~LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld~I 89 (90)
T 2lz1_A 16 RLEAHLTRDELRAKALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLENI 89 (90)
T ss_dssp CCCCCCCHHHHHHHHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCSCC
T ss_pred chhhccchhHHHHHHcCCCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999875
No 2
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=99.98 E-value=2.2e-34 Score=234.13 Aligned_cols=75 Identities=60% Similarity=0.979 Sum_probs=71.9
Q ss_pred hhhhhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHH
Q psy14684 167 SEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQIL 241 (357)
Q Consensus 167 ~~~~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~ 241 (357)
.+++.+||||+||++++||||+|+||+|||+|||+||++++||++|+++|||||||||||||||||||||+|.|.
T Consensus 16 ~~~~~~srDE~ra~~l~lPfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~I~ 90 (91)
T 2kz5_A 16 ARGEAGSRDERRALAMKIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLETIV 90 (91)
T ss_dssp CCCCCCCHHHHHHHHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC
T ss_pred hhhhhhchhHHHHHHhCCCCCHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999874
No 3
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=99.97 E-value=1.7e-32 Score=223.23 Aligned_cols=78 Identities=37% Similarity=0.591 Sum_probs=73.0
Q ss_pred hhhhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHH
Q psy14684 168 EEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLAD 245 (357)
Q Consensus 168 ~~~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEd 245 (357)
.+..+||||+||++++||||++|||+|||+|||+||++++||++|+++||+||||+|||+|||+|||||++.++.|+.
T Consensus 13 ~~~~~srDE~ra~al~lPfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 13 KRGRQSKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp --CCCCHHHHHHHHTTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred cccccchhHHHHHHhCCCCCHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999999874
No 4
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=99.95 E-value=3.5e-30 Score=215.53 Aligned_cols=99 Identities=19% Similarity=0.388 Sum_probs=90.0
Q ss_pred cCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14684 182 LNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEH 261 (357)
Q Consensus 182 l~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr 261 (357)
..+|||+|+||+|||+|||++|. +||++|+..||++|||+|||+|||+||+||++++.+||+++..|+.+.+.|..|+
T Consensus 4 ~~~~~sd~~Lv~m~v~elN~~L~--~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En 81 (107)
T 3a5t_A 4 MGTSLTDEELVTMSVRELNQHLR--GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASEN 81 (107)
T ss_dssp CCCCCCHHHHHHSCHHHHHHTTT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTT
T ss_pred CCCCCCHHHHhcCCHHHHHHHHh--CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999996 5999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14684 262 EYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 262 ~~L~~e~~~LKqkl~~L~q~V 282 (357)
..|..|++.|+.+|+.|++.+
T Consensus 82 ~~l~~E~~~lk~k~e~L~~~a 102 (107)
T 3a5t_A 82 ASMKLELDALRSKYEALQNFA 102 (107)
T ss_dssp SHHHHTTTSSSSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999543
No 5
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=99.94 E-value=2.1e-27 Score=193.56 Aligned_cols=89 Identities=25% Similarity=0.388 Sum_probs=86.6
Q ss_pred hhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 189 NDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 189 deIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~ 268 (357)
|+||+|||+|||++|. +||.+|+.+||++|||+|||+|||+||+||++++.+||.++..|..+.+.|..|+..+.+++
T Consensus 1 deLv~msVreLN~~L~--gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 1 DQLVSMSVRELNRHLR--GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp CHHHHSCHHHHHTTCT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHc--CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999996 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy14684 269 SRVKSQFSQLY 279 (357)
Q Consensus 269 ~~LKqkl~~L~ 279 (357)
+.|+++|+.|+
T Consensus 79 d~~k~k~~~L~ 89 (90)
T 2wt7_B 79 DAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.41 E-value=7e-13 Score=100.62 Aligned_cols=60 Identities=30% Similarity=0.429 Sum_probs=56.3
Q ss_pred HHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 217 RDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 217 RdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
|..||+++||+||++||.||.+.+.+||++|..|..++..|..++..|..++..|+..|.
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999988774
No 7
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.37 E-value=4.5e-13 Score=101.11 Aligned_cols=59 Identities=31% Similarity=0.518 Sum_probs=52.9
Q ss_pred HHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 218 DIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 218 dIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
..|||++||+||++||.||.+.|.+||++|..|..+++.|..++..|..++..|++.|-
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999988763
No 8
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.31 E-value=4.5e-12 Score=95.22 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=54.9
Q ss_pred HHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 218 DIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 218 dIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
..+|+.+||+||++||.||.+.+..||.+|..|..++..|..++..|..++..|++.|
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999876
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.17 E-value=7.9e-11 Score=89.61 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=51.8
Q ss_pred HHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 216 IRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 216 IRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+|.+|+|.+|++||++||.||.+.+..|+.++..|..+|..|..++..|..|+..|++-|.
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999987664
No 10
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.95 E-value=6.9e-10 Score=84.69 Aligned_cols=51 Identities=31% Similarity=0.433 Sum_probs=43.0
Q ss_pred HHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 218 DIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 218 dIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~ 268 (357)
..|||.+|++||.+||.||.+++.+||.+|..|..+|..|..|+..|..++
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999999999999999987777766665544
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.80 E-value=2.9e-09 Score=79.28 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=44.8
Q ss_pred HHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 217 RDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 217 RdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
|.+||..+||.+|+.||.||...+.+||.+|..|..+|..|..++..|..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999988888777776543
No 12
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.64 E-value=6.6e-08 Score=78.33 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=56.8
Q ss_pred HHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 218 DIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 218 dIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
-.+||.||.+||++||.++......++.++..|..+|..|..++.+|..|+..|++.|.++...++
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 356789999999999999999999999999999999999999999999999999998887765544
No 13
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.59 E-value=6.1e-08 Score=77.08 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=53.8
Q ss_pred HHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 219 IRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 219 IRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
+.||.||.+||++||.++.....+++..+..|..+|..|..++..|..|+..|++.|.+
T Consensus 17 ~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999998876643
No 14
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.04 E-value=8.9e-06 Score=63.50 Aligned_cols=60 Identities=25% Similarity=0.415 Sum_probs=54.3
Q ss_pred HHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 219 IRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 219 IRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.||+..||.|+..-|.||...|.+||.+|..|...++.|..|+..|..++..|...+..|
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999999988888888888888877643
No 15
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=95.20 E-value=0.088 Score=47.06 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy14684 206 YDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLM-------QEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 206 ~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~-------kEr~~L~~e~~~LKqkl~~L 278 (357)
.+||+||.+.|++||..-+.+..+ |-.++..++.|...|. ..+..|.+|+.+|+.++..+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~-------------Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSA-------------LRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999766655443 3333344444444443 35566777777777777666
Q ss_pred HHHHhhhccCCCCCCC
Q psy14684 279 YKHVFNALRDSDGNPY 294 (357)
Q Consensus 279 ~q~Vf~~LrD~~G~P~ 294 (357)
.-+....++.+ |-|+
T Consensus 133 R~k~~~em~Ke-Gip~ 147 (175)
T 3lay_A 133 RVKRDVAMAQA-GIPR 147 (175)
T ss_dssp HHHHHHHHHHT-TCC-
T ss_pred HHHHHHHHHHh-CCCC
Confidence 66666677666 7653
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.47 E-value=0.28 Score=39.33 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=29.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+|.|.-|+-||+.|+.+|..|..|+.++...+..|.+....|+
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788888889999999998877777664444444444443333
No 17
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=93.28 E-value=0.21 Score=37.90 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=18.7
Q ss_pred HHHhccchHHHHhhhhhHHHHHHh
Q psy14684 219 IRRRGKNKVAAQNCRKRKLDQILS 242 (357)
Q Consensus 219 IRRRgKNRvAAQnCRKRKLd~I~~ 242 (357)
.++|-|||+|+.+||-|=...+..
T Consensus 3 e~kryknr~asrk~rakfkn~lqh 26 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQH 26 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999886555443
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.25 E-value=0.28 Score=36.15 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+++.|+.|++.|+.++..|..++++|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888888888888888888888888775
No 19
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=89.88 E-value=1.2 Score=32.79 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=34.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
-+++.+|..++..|..+|++|.........++..|++.|..|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888888888888888888888888888888766
No 20
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.85 E-value=1 Score=32.27 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+.+||..+++|...+..|...+.-|..|...|+|.+.
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 46799999999999999999999999999999998763
No 21
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.61 E-value=0.41 Score=32.88 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=21.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
++..||+.|+.|-.+++.|..|+..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4677888888888888877777776654
No 22
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=89.61 E-value=0.4 Score=32.79 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
+..||+.|+.|..++..|..|+..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567889998888888888888777654
No 23
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.37 E-value=0.7 Score=32.11 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=22.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
++..||+.|+.|..++..|..|+..|+.-+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4667888888888888877777776665443
No 24
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=89.08 E-value=0.45 Score=33.06 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=23.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
++..||+.|+.|-.++..|..|+..|+..+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3567888888888888888888877766554
No 25
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=87.53 E-value=0.69 Score=31.76 Aligned_cols=28 Identities=7% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
++..||+.|+.|-.++..|..|+..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4677888888888888877777776654
No 26
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=86.57 E-value=4 Score=35.28 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=36.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhH-------HHHHHHHHHHHHHHHHHH
Q psy14684 201 ERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSL-------ADEVKQMKDKKRHLMQEH 261 (357)
Q Consensus 201 elLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~L-------EdEV~~Lk~EkekL~kEr 261 (357)
.|+++..||++|..-||+|+...+....+.+ .-..+.+..| |..|..|..+...+..++
T Consensus 39 ~m~~~L~LTdeQkqqir~L~~~~r~~~~~~~--~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e~ 104 (145)
T 3itf_A 39 HMFDGISLTEHQRQQMRDLMQQARHEQPPVN--VSELETMHRLVTAENFDENAVRAQAEKMANEQIAR 104 (145)
T ss_dssp STTTTCCCCHHHHHHHHHHHHHHHHHSCCCC--HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999975543332221 1112334444 456666666666665554
No 27
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=86.18 E-value=0.91 Score=35.10 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
..|+.+++.|..|+..|..++..|+++|..|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555666666666666666543
No 28
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=86.18 E-value=1.2 Score=34.90 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=17.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
+.|..|+++...|..+++ .|..+...|+++|++
T Consensus 47 ~yI~~L~~~~~~l~~e~~-------~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQID-------QLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 455555555555555554 555555555555543
No 29
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.55 E-value=1.6 Score=36.38 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
..+|..|+.+|..|+.||+.|++|+..-.+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467889999999999999988888765544
No 30
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.44 E-value=1 Score=30.71 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
+..||+.|+.|-.++..|..|+..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467888888888888877777766654
No 31
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=85.43 E-value=3.5 Score=41.88 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
..|..+...|..++..|..++.++.+++.
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 32
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=85.39 E-value=1.5 Score=34.73 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=16.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
++.|..|+.+...|..+++.|..++..|..++.+
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444444444433
No 33
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=85.22 E-value=0.99 Score=31.02 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=20.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
++..||+.|+.|-.+++.|..|+..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4667888888888888877777776654
No 34
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=85.13 E-value=2 Score=33.65 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 257 LMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 257 L~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
|..+...+..+++.|+.+...|-+.+
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666666666666665443
No 35
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.70 E-value=3.8 Score=35.07 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHH
Q psy14684 207 DLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQ 249 (357)
Q Consensus 207 ~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~ 249 (357)
.||..|..+. ..-.=|..|-.--+.-...|+.+..+
T Consensus 33 qLTqAQe~l~-------~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 33 ELTEAQKGFQ-------DVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665432 12344555655555555555554444
No 36
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=84.52 E-value=1.1 Score=30.77 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
++..||+.|+.|-.++..|..|+..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567888888888888877777776654
No 37
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=83.74 E-value=1.4 Score=41.78 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=39.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
-+++.+|+.++..|..++++|..++..+++++..|+.++..|.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55677899999999999999999999999999999999998874
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.64 E-value=3.3 Score=32.47 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=35.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
++|.+||..+.-+..-.+.|...+.+..++++.|+.++..|...+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888888887777544
No 39
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=83.46 E-value=2.3 Score=38.39 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.3
Q ss_pred CCCCChhhHhcCCHHHHHHHHhcC
Q psy14684 183 NIPIPVNDIINLPMDEFNERLSKY 206 (357)
Q Consensus 183 ~IPFSvdeIVnLPV~EFNelLs~~ 206 (357)
.+|+|. .|-+||..||.+||...
T Consensus 28 ~~~LP~-~L~~LS~~eL~~LL~~~ 50 (192)
T 2p22_C 28 NIPLPE-GINLLSSKEIIDLIQTH 50 (192)
T ss_dssp CCCCSS-GGGSCTTHHHHHHHHHC
T ss_pred CCCCCH-HHHhCCHHHHHHHHhCh
Confidence 567765 68889999999998874
No 40
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=83.36 E-value=1.7 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=21.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
++..||+.|+.|-.++..|..|+..|+.-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678888888888888777777776654
No 41
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=83.34 E-value=1.5 Score=30.00 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
+..||+.|+.|-.++..|..|+..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567888888888888877777776654
No 42
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.02 E-value=11 Score=33.78 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=25.2
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 233 RKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 233 RKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
|.+--+.|.+|+..+..|..+.++++.-...+..++..|.++|..|-
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555554443
No 43
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.85 E-value=3.8 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
..+..|..+.+.|..++..|..++..|+..+..|-+.++
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356778888888888888888888888888888876654
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=82.66 E-value=4 Score=30.37 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.+..|..+.+.|..++..|..++..|+..+..|...+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999998888876543
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.55 E-value=9.3 Score=37.56 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=1.9
Q ss_pred ccCCCCCC
Q psy14684 286 LRDSDGNP 293 (357)
Q Consensus 286 LrD~~G~P 293 (357)
+..-++||
T Consensus 578 ~~~~~~~~ 585 (597)
T 3oja_B 578 EAKKNRNP 585 (597)
T ss_dssp HHTTC---
T ss_pred HHHhcCCC
Confidence 33334443
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.55 E-value=5.6 Score=31.83 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=29.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
..|..++..++..++.|..|+.+|..+......+|..|...+
T Consensus 37 ~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 37 NSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666677788888888888888887777553
No 47
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.44 E-value=2.9 Score=32.26 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
++.|..|+.++..|..+++.|..++..|...+..|
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888888888888888887777654
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.14 E-value=7.2 Score=32.88 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=32.9
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 233 RKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 233 RKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+..-+++|..|+.++.--+..-..=...+..+..++.+|.++|..|.+++
T Consensus 57 ~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 57 HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 44557888888888877655544444455566677777777777666554
No 49
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=81.15 E-value=1.8 Score=39.22 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=26.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
-.+-|+-|=+.+..|+.++++|.+|++.|..+.+++.++|+
T Consensus 143 i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 143 IRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555666666666666666666666666666666654
No 50
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=80.70 E-value=2.1 Score=43.57 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=37.0
Q ss_pred HHHHhhhhhH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 227 VAAQNCRKRK-----LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 227 vAAQnCRKRK-----Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
..+++|++|. +|.|..|..+...++.+.+.|+.+++.+.+++.+++.
T Consensus 21 ~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 21 IIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666663 6888899999999999999999999888888876654
No 51
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.57 E-value=2.2 Score=31.59 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.+..|..+.+.|..++..|..++..|+..+..|-+.+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777776655544
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.10 E-value=4.3 Score=39.27 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.......+++.|++++++|++++.++...+.+.+++|..+...
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 3445566777788888888888888888888888888777643
No 53
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=78.75 E-value=13 Score=31.34 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
..-|..+.+.|..++.+|...++.|..++.. |+.+.
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~-~~~~~ 132 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAK-YEDEI 132 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3446666777777777777777777777753 43433
No 54
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=78.12 E-value=5.6 Score=38.55 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=39.2
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 230 QNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 230 QnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
++|++- ++.|..||..|.....+...|...+..+...+++|++++..|...+
T Consensus 5 ~~~~~~-~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 5 KTVQKI-LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 5677778888888888888888888888888888888887777543
No 55
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.04 E-value=7.8 Score=33.16 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.|..|-.++..++.+.+.+.+|+..|.+++++|..++..|-
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555554443
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.77 E-value=7.9 Score=37.26 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=31.3
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 228 AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 228 AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
-|..|-.-.+--...||.+|.+-..+.+.|..|+..|..+++.++.+++.|
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 419 QAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666667777776655566666666666666666666555543
No 57
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=77.66 E-value=5.4 Score=26.75 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
|+..|++|...|++|+..|+-|+..|+|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666666566666666555555554
No 58
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.60 E-value=5 Score=39.68 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=30.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
..+|+.|+..|++++++|.+++.++..++.+++++|
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888888888888888888888888876
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.01 E-value=16 Score=31.19 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=37.6
Q ss_pred HHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 218 DIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 218 dIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.++--++...|.. ..++.+|++||..|.++.+++..|+.+|+++...+..++.
T Consensus 57 tL~~SL~~ekaq~------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 57 ALMASLDAEKAQG------QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 3444455444443 3458889999999988888888888888888777776654
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.80 E-value=4.9 Score=29.48 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 252 DKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 252 ~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
.+.+.|+.|+.+|+.++..|+.++..|...+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777766543
No 61
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=76.40 E-value=9.2 Score=30.20 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=35.2
Q ss_pred HHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 236 KLDQILSLA---DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 236 KLd~I~~LE---dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
|++.+.-|. +=+..|+.+..+|..++..|..+...|+.+|..|.
T Consensus 40 K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 40 KAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444 55778999999999999999999999999998873
No 62
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.27 E-value=9.4 Score=28.00 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++.+..|+.++..|-..+..|...+.+.++++..|..+|-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999999987764
No 63
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.27 E-value=4.8 Score=31.66 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=4.3
Q ss_pred HHHHHHHHh
Q psy14684 196 MDEFNERLS 204 (357)
Q Consensus 196 V~EFNelLs 204 (357)
+.+|+.+|.
T Consensus 21 i~eLq~~L~ 29 (72)
T 3nmd_A 21 LRDLQYALQ 29 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444544444
No 64
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=76.13 E-value=3.7 Score=41.74 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14684 262 EYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 262 ~~L~~e~~~LKqkl~~L~q~ 281 (357)
..|..++.+|..++..+..+
T Consensus 81 ~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444433333
No 65
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=75.94 E-value=10 Score=30.09 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
+.+|...+..|+.|..+|.-.++++.-++..|+++-..+|..+=.+++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777778888888888888889988765555
No 66
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.90 E-value=2.6 Score=41.42 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
|..|+.++..|+++++.|..++..+..++.++++++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666655555554
No 67
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.39 E-value=12 Score=31.11 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
|.+.++|+.+.+++++.....+|...++.....|+.++..|...+-
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777776654443
No 68
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=75.30 E-value=4 Score=28.03 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=21.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
++..||+.|+.|-.++..|..|+..|+.-
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35678888888888888777777766543
No 69
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=75.29 E-value=15 Score=26.49 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEH-------EYLSQECSRVKSQF 275 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr-------~~L~~e~~~LKqkl 275 (357)
+..||.||..|..+++.|++.+ .-|.+++..|+.++
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999888654 34566666666654
No 70
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.01 E-value=9.6 Score=28.43 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+...|..+.+.|..++..|..++..|+..+..|-+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666665543
No 71
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=74.40 E-value=20 Score=26.94 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFN 284 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~ 284 (357)
=+|.+..|-|+|..|++++.+|.+-..+=.+. +.+|+.+...++.
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkA----Rk~LE~~vrk~~k 52 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRA----RKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 36777888888888888888777655444443 3444445444443
No 72
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=73.89 E-value=4.5 Score=30.43 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
..+..|..+.+.|..|+..|..++..|++.|+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777777777777776666554
No 73
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=73.82 E-value=2.8 Score=35.60 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=40.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHH-HH---
Q psy14684 201 ERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSL-------ADEVKQMKDKKRHLMQEHEYLSQE-CS--- 269 (357)
Q Consensus 201 elLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~L-------EdEV~~Lk~EkekL~kEr~~L~~e-~~--- 269 (357)
.|+++.+||++|..-||+|+...+..+.+. -+..+ +.+..| |..|..|..+...+..++.....+ ..
T Consensus 27 ~m~~~L~LT~eQ~~qir~i~~~~r~~~~~~-~~~~r-~~l~~Li~a~~fDeaav~al~~~~~~~~~e~~~~~~~~~~~~~ 104 (138)
T 3oeo_A 27 MMFKDLNLTDAQKQQIREIMKGQRDQMKRP-PLEER-RAMHDIITSDTFDKVKAEAQIAKMEEQRKANMLAHMETQNKIY 104 (138)
T ss_dssp ---CCSCCCTTHHHHHHHHHHHHSSSSCCC-CTTHH-HHHHHHHTCSSCCHHHHHHHHGGGSHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998766544311 11111 223222 345555655555555444322211 11
Q ss_pred -----HHHHHHHHHHHHHhhhccCCCCC
Q psy14684 270 -----RVKSQFSQLYKHVFNALRDSDGN 292 (357)
Q Consensus 270 -----~LKqkl~~L~q~Vf~~LrD~~G~ 292 (357)
+=+.+|...+..-+..++...|.
T Consensus 105 ~vLTPEQr~q~~~~~~kr~~~~~~~~~k 132 (138)
T 3oeo_A 105 NILTPEQKKQFNANFEKRLTERPAAKGK 132 (138)
T ss_dssp TTSCHHHHHHHHHHTC------------
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhccccC
Confidence 12344555555555556666665
No 74
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.68 E-value=20 Score=28.47 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHhccchHHHHhhhhhHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 219 IRRRGKNKVAAQNCRKRKLDQILSLADEVK----QMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 219 IRRRgKNRvAAQnCRKRKLd~I~~LEdEV~----~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+|||.|=++.=-.|= ++.+..-++|+. .|..-.++|.+|...|.+++..|+.+.+.|-
T Consensus 12 LRrrl~E~~~q~qaE---l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAE---LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555544443 222222233333 3555566677777788888888888877664
No 75
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.36 E-value=13 Score=31.68 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.+..++.|+..|+.+...+..+...+.+++.+|+.++..|...+-
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777777777777777777777777776654
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.11 E-value=13 Score=29.39 Aligned_cols=44 Identities=11% Similarity=0.244 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+-+.+..|+..++.+..+.++|......+..++.+++.+|..++
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666666655544
No 77
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=73.10 E-value=20 Score=29.98 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=8.2
Q ss_pred HHhcCCCCHHHHHHHH
Q psy14684 202 RLSKYDLSETQLSLIR 217 (357)
Q Consensus 202 lLs~~~LSeeQl~lIR 217 (357)
.|+..+||-+++..+=
T Consensus 54 ~lr~~G~sL~eIk~~l 69 (142)
T 3gp4_A 54 QMRRAGLSIEALIDYL 69 (142)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 3345556655554443
No 78
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=72.91 E-value=9.9 Score=28.32 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
+.|-.+|+.|+.|+..|.+|...-.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 3455667777777777776665433
No 79
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=72.43 E-value=14 Score=30.29 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=40.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+-.-+.+.-|+..++.|....++|.+....+...+..+.+.+.++++.+
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445677788888888888888888888899999999999988888754
No 80
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=71.11 E-value=10 Score=26.35 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
.+++|..+.+.|+.++..|..+...|+..+..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 36789999999999999999999999887753
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.96 E-value=7.2 Score=38.64 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=33.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.++..||.+++.|..+++.|..|...+.+++..+++++..|.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355668888888888888888888888888888888876654
No 82
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.93 E-value=7.9 Score=31.05 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
|.++..|+.+.+.+..|+..|..+++.|...+..+.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666655555443
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.80 E-value=14 Score=36.36 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=19.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
...||.++..|+.+.+.-++...++.+++..+++++.+|.+.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444555555555555555433
No 84
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.09 E-value=8.9 Score=31.71 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
++..|+.+.+.|..|+..|.++++.|.-+|+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666665543
No 85
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.00 E-value=8.6 Score=31.79 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=8.7
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~ 258 (357)
|..|+.|...|+.+++.|.
T Consensus 21 i~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 86
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=68.60 E-value=19 Score=26.17 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
.+..|+..+-+|.+.-+.|.+-+..|++.+..|-++|-++
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566666666666677777888888888888777643
No 87
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=67.72 E-value=2 Score=37.57 Aligned_cols=37 Identities=5% Similarity=0.349 Sum_probs=29.0
Q ss_pred CChhhHhcCCHHHHHHHHhc-------CCCCHHHHHHHHHHHHh
Q psy14684 186 IPVNDIINLPMDEFNERLSK-------YDLSETQLSLIRDIRRR 222 (357)
Q Consensus 186 FSvdeIVnLPV~EFNelLs~-------~~LSeeQl~lIRdIRRR 222 (357)
++.|||.+||.+||-+||.. .+|+..|..+|+.+|+-
T Consensus 20 ~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrka 63 (142)
T 3u5c_P 20 VDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAA 63 (142)
T ss_dssp CBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHH
T ss_pred ccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHH
Confidence 47899999999999988752 25788888888877753
No 88
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=67.64 E-value=12 Score=33.95 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=28.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
++++.+|+.++..|+.++++|++|.+....+++
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888999999999999999999999888777654
No 89
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=66.56 E-value=20 Score=25.86 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=23.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+..||.-++.|+..-.+|+.|. ...-.+||+++..|-..
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 44556666666666655555443 33456777888777654
No 90
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=66.29 E-value=4.8 Score=26.17 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
..|++++.+|++|+..|.-|+..|.
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 3466777777777777777666553
No 91
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=66.06 E-value=18 Score=26.96 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.++|..+.+.|++|+..|++|+..=...|+.|-.+.+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets 41 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEAS 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhh
Confidence 3567777777777777777777777777776655543
No 92
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=65.40 E-value=12 Score=29.50 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=6.1
Q ss_pred HHHhHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKD 252 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~ 252 (357)
.|.++...+..++.
T Consensus 22 e~dn~~~~~edfk~ 35 (86)
T 3swk_A 22 ERDNLAEDIMRLRE 35 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.24 E-value=13 Score=28.67 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
..+..|..+...|..+...|..++..|+..+..|..+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555554443
No 94
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=64.84 E-value=17 Score=28.78 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=34.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
-|-..|..|++.+.---...|+|.-|+-.|.-|..-|.++|..|.+
T Consensus 29 ~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 29 SKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3456778888777666667788999999999999999999988764
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.78 E-value=25 Score=36.67 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+|+..+..|+.+.+.-+..+..|+..++.++.++..|-..|-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444444444444444455555555544444444443
No 96
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=64.69 E-value=15 Score=36.21 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.|..+...|..++..|..++.++.+++.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 97
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.26 E-value=15 Score=29.40 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.+..+.+.|..|+..|..++..|+..+..|- .+|..+.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr-~ll~~~p 77 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR-NLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCc
Confidence 3666777788888888888888888877655 3443444
No 98
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=64.16 E-value=10 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
|+.+-++|..|.+.|.+....|+++++.|
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566677777777777777777777654
No 99
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=63.38 E-value=15 Score=24.62 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
|...|++|+..|++|+..|+-.+..|.+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44567888888888888888888777653
No 100
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=63.37 E-value=16 Score=25.13 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
..+|..+.+.|..++..|..+...||.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56888999999999999999998888755
No 101
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=61.99 E-value=10 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+++|..+.+.|..++..|..+...|+.-+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 578888889999999888888888887664
No 102
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=61.69 E-value=22 Score=34.85 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+.|..|+.++..|.++.++|+.|+.++...+.+....-..|+++
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544444444333344433
No 103
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=61.55 E-value=33 Score=27.55 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+..||.+-..|..+...|..|...|..+-..++..++.+...
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 104
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=61.33 E-value=18 Score=24.66 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.++|..+.+.|..++..|..|...||.-|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 468889999999999999999998887653
No 105
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.28 E-value=12 Score=29.09 Aligned_cols=40 Identities=5% Similarity=0.199 Sum_probs=20.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
-+.+..|+..++.+..+.+.|......+..++.+++.+|.
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555443
No 106
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=61.05 E-value=23 Score=29.29 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 213 LSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 213 l~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
-.-|.++|+.. ..+..-+-|=.-.|.+++..++.++.+-+.-...+..+..++..||.
T Consensus 19 e~~I~~LR~qi---d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK 76 (119)
T 3ol1_A 19 EEEMRELRRQV---DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 76 (119)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 34466666543 23333344444466777777777666555444444444444444443
No 107
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=60.84 E-value=47 Score=24.42 Aligned_cols=37 Identities=5% Similarity=0.073 Sum_probs=25.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+|..|..+|..|..+.+.|..++..|..++...++.-
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777766666555543
No 108
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.46 E-value=35 Score=34.04 Aligned_cols=9 Identities=11% Similarity=0.446 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy14684 270 RVKSQFSQL 278 (357)
Q Consensus 270 ~LKqkl~~L 278 (357)
+|..++..+
T Consensus 87 ~~~~~~~~~ 95 (455)
T 2dq0_A 87 ELENEVEEL 95 (455)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 109
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.71 E-value=48 Score=26.56 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.+|=.||+.|+-..+.|..|+.+..+.+...|..|..|.+.+.
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3677889999999999998888888888888888777766654
No 110
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=59.58 E-value=21 Score=26.14 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy14684 231 NCRKRKLDQILSLADEVKQMKDKKRHLMQEH-EYLSQECSRV 271 (357)
Q Consensus 231 nCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr-~~L~~e~~~L 271 (357)
-|-+||.+.+.+|.+==++-..=+++|=+|+ .++.+++.++
T Consensus 3 ~~errr~e~ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 3 DYERRRSECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777787777665532222223334444443 4444444444
No 111
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=59.52 E-value=5 Score=38.84 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
||.|..||..|..+..+.+.|...+..+..++.+|++++..|...
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777777776654
No 112
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=59.33 E-value=9.2 Score=34.81 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=18.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHE 262 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~ 262 (357)
|++|.+|+.+...|+.||++|.+|.+
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777777777777777777777653
No 113
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=59.02 E-value=40 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
+|.+|..|...+..|..|+..+...+...+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333333
No 114
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.93 E-value=21 Score=24.49 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
..+|..+.+.|+.++..|..|...||.-|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 578899999999999999999998887653
No 115
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=58.66 E-value=28 Score=34.30 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhccC
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH--VFNALRD 288 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~--Vf~~LrD 288 (357)
++.+|+.++++++.+++.|..+..+...++.+|-..+..|... ||-++|.
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP 69 (412)
T 3u06_A 18 RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRP 69 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 3344555555555555555555545555555555555555433 4455553
No 116
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.26 E-value=11 Score=35.54 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
|+.+.+|+.+.+.|...+..|..+++++++++..|..++- .|+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle-rL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD-RLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 7778888888888888888888899999999988888876 454
No 117
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=58.16 E-value=20 Score=24.01 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
..||.||.+-..++=+|.+|..+|.-+
T Consensus 4 aqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 356666666666666666666655543
No 118
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=57.96 E-value=25 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.1
Q ss_pred HhcCCCCHHHHHHHHHHHHhccc
Q psy14684 203 LSKYDLSETQLSLIRDIRRRGKN 225 (357)
Q Consensus 203 Ls~~~LSeeQl~lIRdIRRRgKN 225 (357)
.++..||++|..-||+||.-.|.
T Consensus 13 ~~~L~LTd~Qk~qir~L~~~~r~ 35 (108)
T 3o39_A 13 FKDLNLTDAQKQQIREIMKGQRD 35 (108)
T ss_dssp CCCSCCCHHHHHHHHHHHHTTTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Confidence 35778999999999999986543
No 119
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=57.83 E-value=60 Score=25.85 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=34.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
-..|.+|...|..+..++.+|.-|+..|..++..+|.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467889999999999999999999999999999998874
No 120
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=57.82 E-value=42 Score=24.42 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
..+.|..++..|..++..|+.++..|...|
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666666666666555433
No 121
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=57.14 E-value=52 Score=24.73 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
.|-+-|-+|+.+.+.|++|...|.+.+++=..
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqk 38 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQR 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655555555554333
No 122
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=56.81 E-value=85 Score=26.14 Aligned_cols=6 Identities=0% Similarity=0.540 Sum_probs=2.4
Q ss_pred CChhhH
Q psy14684 186 IPVNDI 191 (357)
Q Consensus 186 FSvdeI 191 (357)
||.++|
T Consensus 60 ~sL~eI 65 (142)
T 3gp4_A 60 LSIEAL 65 (142)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 333343
No 123
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.24 E-value=30 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+.|...+.++..+..+...|..++..+..++..|+.++.
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777888888788888888887777776
No 124
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=56.06 E-value=21 Score=30.07 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+..|..+.+.|..++..|...++.|...+.
T Consensus 82 ~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 82 LRQMHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555566655555555544
No 125
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=55.92 E-value=52 Score=23.42 Aligned_cols=33 Identities=3% Similarity=0.038 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.+..+..+.+.+.....++...+..++..+..|
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444
No 126
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.75 E-value=34 Score=26.95 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=29.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+.++++++..+..+...|..++..+..++..++..+..|
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777778888888888888888888888777654
No 127
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=55.66 E-value=13 Score=25.39 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
..+|..+.+.|..|+..|..|...|+.-|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35788889999999999999988887654
No 128
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=55.51 E-value=34 Score=28.42 Aligned_cols=40 Identities=18% Similarity=0.412 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.|.+|+..+......+..|..+...|..++..|+..+..|
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666666666666554
No 129
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.37 E-value=34 Score=27.06 Aligned_cols=37 Identities=3% Similarity=0.076 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
..+|..|+.||..|+-+.|.+..++..+.+....+-.
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666554444433
No 130
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=54.78 E-value=20 Score=27.79 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=6.4
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKR 255 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~Eke 255 (357)
.|..|+.++..|..+++
T Consensus 51 YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 131
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=54.45 E-value=38 Score=26.69 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=25.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.+..||.-++.|+.+.-+|+.|.. ..-.+||+++..|-+.|-
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666665543 334456666666655544
No 132
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.75 E-value=48 Score=33.02 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=33.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+=++.|..||.-|.....+...|......+...++.|++++..|..
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3466777888777777777777777777777778888887777754
No 133
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=53.27 E-value=24 Score=27.70 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+..+.+.|..|+..|..++..|+..+..|-
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666543
No 134
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=53.16 E-value=22 Score=29.71 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQF---SQLYKHV 282 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl---~~L~q~V 282 (357)
|..+...|+..+..|.+|++-+=.|| +-|++..
T Consensus 23 L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 23 LNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444433 3344443
No 135
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=52.94 E-value=30 Score=23.56 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.++|..+.+.|..++..|..|...|+.-|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 46788899999999999998888887654
No 136
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.90 E-value=45 Score=26.18 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRD 288 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD 288 (357)
+-+..|....+.|..++..|...+..+..++..|...+...+..
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666899999999999999999999999999998887776653
No 137
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=52.24 E-value=59 Score=35.90 Aligned_cols=29 Identities=17% Similarity=0.388 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
.+..|++++..|+.+.+++.+|...+...
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444444333
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.81 E-value=53 Score=27.18 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
++.....|.||..|+.+...|.+........+.++....
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~ 48 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGREN 48 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 566777788888888888888877766655555554443
No 139
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=51.64 E-value=24 Score=24.17 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+++|....+.|..++..|..+...|+.-+.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 578889999999999999999988887654
No 140
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.53 E-value=29 Score=27.63 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+|=..|+.|-+|++-|..|+..+...+.+++.++..|-.+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777777777777777777666544
No 141
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=51.43 E-value=37 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=19.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~ 258 (357)
|.++.|..||.|+..|+.+++.-.
T Consensus 3 rQ~EEILRLErEIE~Lqrqke~~~ 26 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRMKEQQE 26 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999998887433
No 142
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=51.15 E-value=56 Score=27.20 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+=+|+.|-+.+..+......|.+|..+..+++..+|..+..|...+-
T Consensus 29 ~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 29 MYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888888888888888888888888888888776644
No 143
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=50.42 E-value=21 Score=33.09 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=48.2
Q ss_pred HHHHHcCC-CCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhh---hhhHHHHHHhHHHHHHHHHH
Q psy14684 177 KKARALNI-PIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNC---RKRKLDQILSLADEVKQMKD 252 (357)
Q Consensus 177 ~RA~al~I-PFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnC---RKRKLd~I~~LEdEV~~Lk~ 252 (357)
+-.+..++ .|+.-+|++=...-+...|+. =+-++ |=|.--......| ....++++..|+.|...+++
T Consensus 99 ~~l~~~gv~DFtl~DL~kP~~~Rt~~iLSa------lINF~---~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~ 169 (250)
T 2ve7_C 99 SFLPICRVNDFETADILCPKAKRTSRFLSG------IINFI---HFREACRETYMEFLWQYKSSADKMQQLNAAHQEALM 169 (250)
T ss_dssp HHHHHTTCCCCCHHHHHSCCHHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcHhHhcCCchHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455665 799999999888888888875 22232 2121111111111 22344555555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.++|+.++.+...+....+..+.+||..|-
T Consensus 170 ~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt 200 (250)
T 2ve7_C 170 KLERLEKEVDEDTTVTIPSAVYVAQLYHQVS 200 (250)
T ss_dssp SCC-------------CTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 6666666665555555555556677887775
No 144
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=50.37 E-value=19 Score=26.50 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=25.8
Q ss_pred ccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 223 GKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 223 gKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
.|||||-.- ..-..||.-|..|...+..|.+.+..|.+.+..|..
T Consensus 8 lknrvaykl------kenaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 8 LKNRVAYKL------KENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp ---CCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 478887533 333445555677777777777777766666655543
No 145
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.97 E-value=44 Score=27.05 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
++..|..++..|..|+..|..|+.++...+..
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555543
No 146
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.71 E-value=1e+02 Score=25.44 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhhH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 211 TQLSLIRDIRRRGKNKVAAQNCRKRK-----LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 211 eQl~lIRdIRRRgKNRvAAQnCRKRK-----Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.++.-++..+.-.-+.++-...|.-. -..|..||.++..++.+.++.++|-..|..-.-.|-..+
T Consensus 52 ~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 52 IELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433332211 123445555555555555555555554444443443333
No 147
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=49.62 E-value=1.1e+02 Score=25.17 Aligned_cols=34 Identities=3% Similarity=0.134 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+|.++..|+...+.+---+..|...++.|++.|
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444433344444444444433
No 148
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=49.39 E-value=23 Score=23.73 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
.||+++..|..-.++|++....|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667776666666655555544443
No 149
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=49.26 E-value=24 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.++|..+.+.|+.++..|..|...||.-|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 468889999999999999999998887653
No 150
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=49.24 E-value=72 Score=31.34 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
+.+.|+.|...|..++.+|..++..+..++...
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666777776666666655543
No 151
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.16 E-value=78 Score=25.32 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHhccchHH
Q psy14684 208 LSETQLSLIRDIRRRGKNKVA 228 (357)
Q Consensus 208 LSeeQl~lIRdIRRRgKNRvA 228 (357)
|-.++-.++..+..=.|++-+
T Consensus 16 l~~eE~~L~~eL~~lEke~~~ 36 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKV 36 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 455555566555554454443
No 152
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=48.80 E-value=71 Score=25.66 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
..|..+.+.|..|+..|+.++.+|+.-
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555444443
No 153
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=48.78 E-value=57 Score=26.43 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=13.0
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~ 258 (357)
.|.+|+.+++.....++-|.
T Consensus 23 Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 23 QLEERSRELQKEVDQREALK 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777776666666555
No 154
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=48.52 E-value=71 Score=29.63 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 228 AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 228 AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.+.|=++-......|+..+.+.+.|+..+....+++++.+.++++.+..+.-+|.
T Consensus 168 yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T 3q0x_A 168 FLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 33444444445667788888888888888888888888888888888877665543
No 155
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=48.39 E-value=89 Score=23.85 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=28.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRD 288 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD 288 (357)
.|.+..|-++|..|++++.++.+= ..+....+..|+.+...+....-|
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~----le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKS----LEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhccC
Confidence 456667777777777777666533 334444555566666665555443
No 156
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=48.30 E-value=38 Score=28.34 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.|..|++++..|+..++.|+.-+..|....+.|...
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 577899999999999999888888888777776554
No 157
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=48.14 E-value=87 Score=23.96 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy14684 244 ADEVKQMKDKKRHL 257 (357)
Q Consensus 244 EdEV~~Lk~EkekL 257 (357)
|.+|..|+.....|
T Consensus 40 E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 40 EDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 158
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=48.01 E-value=60 Score=25.11 Aligned_cols=42 Identities=12% Similarity=0.282 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
+-+..|....+.|..++..|...+..+..++..|...+...+
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455668889999999999999999999999988887766544
No 159
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=47.80 E-value=63 Score=35.56 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=4.4
Q ss_pred hhhhhhhhcc
Q psy14684 34 AQKKYHLYGR 43 (357)
Q Consensus 34 aqkk~~~~gk 43 (357)
.+|=|+.||+
T Consensus 555 ~~kl~~~~~~ 564 (1184)
T 1i84_S 555 VEKLIQEQGN 564 (1184)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHHhCC
Confidence 3444444443
No 160
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=47.49 E-value=70 Score=25.05 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.|..+.+.|..++.+|...+..|...
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (109)
T 1r8d_A 79 ALQSQKEILMKKKQRMDEMIQTIDRT 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444443
No 161
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.31 E-value=1.4e+02 Score=30.37 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~ 285 (357)
+.+.|+.|...|..++.+|..++..+..++...
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666777766666666665543
No 162
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=47.18 E-value=90 Score=24.56 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
+||+.|..|..-.+.|+...+.|..+......+|.+-...+-..++
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666777777777777766677777777666666555545544444
No 163
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.15 E-value=82 Score=24.65 Aligned_cols=32 Identities=6% Similarity=0.084 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQEC 268 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~ 268 (357)
.+.|...+..++.|..+.+.+..++..|..++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333333333333333333333
No 164
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.15 E-value=65 Score=27.05 Aligned_cols=39 Identities=13% Similarity=0.364 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
|..|+..|..|..+.+.-..++..+..+...|+..+..|
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444445555554443
No 165
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=47.14 E-value=1e+02 Score=24.06 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=11.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
++..||.++..-+.+.+.+..|+..+.
T Consensus 22 ~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 22 QLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 166
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=47.08 E-value=50 Score=27.69 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.-+.+..|+..++.|....++|......+...+..+...+..|++.
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777788888888888888888888888888887754
No 167
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=46.93 E-value=31 Score=23.69 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.++|..+.|.|..++..|..|...||.-|
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46788899999999999999998888654
No 168
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=46.49 E-value=31 Score=26.90 Aligned_cols=43 Identities=0% Similarity=-0.011 Sum_probs=27.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
++.-+|+-|++|....-+..+++..|.+.+..|.+++..+-..
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455666777777777777777778888888888888776643
No 169
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=46.46 E-value=35 Score=36.47 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q psy14684 197 DEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 197 ~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~ 258 (357)
+-...|+..+.||+.|.+.|=++|=| |-.+++ +..|+.|.++|..+.+.|+
T Consensus 372 ~~k~~L~~~f~lse~QA~aIL~mrL~----------rLt~le-~~kl~~E~~eL~~~i~~l~ 422 (716)
T 1zvu_A 372 EPKPALMSRFGLTETQAEAILELKLR----------HLAKLE-EMKIRGEQSELEKERDQLQ 422 (716)
T ss_dssp SHHHHHHHSTTCCTTHHHHHHTCCGG----------GGSHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHhhHHH----------HhhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 34678888999999999988766521 111222 3456666666666666555
No 170
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=46.30 E-value=22 Score=35.02 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=9.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEH 261 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr 261 (357)
+.+..|..+...++.+.+.|+.++
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~ 53 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSER 53 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 171
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=46.07 E-value=1.5e+02 Score=25.88 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.|+.||+++..-+.+...+..+......++..|..+|-.|-++|-
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 566777777766666666777777766777777777766666664
No 172
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=45.86 E-value=69 Score=29.08 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy14684 271 VKSQFSQLYKHV 282 (357)
Q Consensus 271 LKqkl~~L~q~V 282 (357)
=|.|+..|.+.+
T Consensus 187 KK~KIR~lq~~L 198 (213)
T 1ik9_A 187 KKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 334444444333
No 173
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.65 E-value=89 Score=24.72 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=12.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
++..||.++..-+.+.+++..|+..+..
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 174
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=45.58 E-value=58 Score=33.55 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=20.0
Q ss_pred hhhHhcC------CHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy14684 188 VNDIINL------PMDEFNERLSKYDLSETQLSLIRDIR 220 (357)
Q Consensus 188 vdeIVnL------PV~EFNelLs~~~LSeeQl~lIRdIR 220 (357)
.|++|.+ +-+.-..|++++.||+.|...|=++|
T Consensus 409 id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~ 447 (514)
T 2inr_A 409 LDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQ 447 (514)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTSSCCHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhch
Confidence 3566544 22334556667888888877765443
No 175
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=45.44 E-value=53 Score=29.77 Aligned_cols=27 Identities=4% Similarity=0.084 Sum_probs=23.1
Q ss_pred CCHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy14684 194 LPMDEFNERLSKYDLSETQLSLIRDIR 220 (357)
Q Consensus 194 LPV~EFNelLs~~~LSeeQl~lIRdIR 220 (357)
+++.+|.++.+.+.||+++.+.||.+.
T Consensus 20 i~m~~le~Lk~~~~fTeeD~~~L~~l~ 46 (195)
T 2veb_A 20 FNLEDLKLLKEAVMFTAEDEEYIQKAG 46 (195)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCHHHHHHHHHhH
Confidence 446889999999999999999997665
No 176
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.22 E-value=84 Score=27.71 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+..|.+|+..|+-+...|......|..|.+.|=+++
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655555555555555554443
No 177
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=44.91 E-value=46 Score=34.19 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=31.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
+|.+..|..+...++.+.+.|+.+++.+.+++.+++.
T Consensus 33 vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~ 69 (522)
T 3vbb_A 33 VDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMK 69 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888889999899999999999888888888877643
No 178
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=44.88 E-value=1.9e+02 Score=27.05 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=3.9
Q ss_pred hhhHhcC
Q psy14684 188 VNDIINL 194 (357)
Q Consensus 188 vdeIVnL 194 (357)
+|+|.++
T Consensus 61 dddl~DI 67 (234)
T 3plt_A 61 DDDVSDV 67 (234)
T ss_dssp CHHHHHH
T ss_pred CchHHHH
Confidence 5555554
No 179
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=44.75 E-value=88 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
..|..|..+.++|..|++.|..+....
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555554433
No 180
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.68 E-value=23 Score=24.80 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=6.9
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKR 255 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~Eke 255 (357)
+|..|+.++..|+.|+.
T Consensus 16 Qi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKH 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 181
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=44.61 E-value=33 Score=23.48 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEH 261 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr 261 (357)
...+.++++|+.+|..|..++
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHH
Confidence 344445555555555444443
No 182
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=44.60 E-value=1e+02 Score=28.14 Aligned_cols=26 Identities=4% Similarity=0.088 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+.+.++.++..+..++..++..+..+
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a 148 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443
No 183
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.49 E-value=1.3e+02 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=15.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
.|..||.++..++.+.++..+|-..|..-.-.|
T Consensus 83 ~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 115 (129)
T 3tnu_B 83 KLAELEEALQKAKQDMARLLREYQELMNTKLAL 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444444333333
No 184
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=44.30 E-value=20 Score=26.26 Aligned_cols=19 Identities=5% Similarity=0.218 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14684 255 RHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 255 ekL~kEr~~L~~e~~~LKq 273 (357)
+.|.+|+..|+.++..|++
T Consensus 37 ~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 37 EIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444433
No 185
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=44.26 E-value=1.2e+02 Score=24.30 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 253 KKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
+.+.-..|+..|..+++..+.++..|-
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444555555555555555554
No 186
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=44.12 E-value=54 Score=22.48 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.++|..+.+.|..++..|..|...|+.-|.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 568888999999999999999888887654
No 187
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.03 E-value=63 Score=29.47 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=10.8
Q ss_pred cccceee----cCCCcEEEEecC
Q psy14684 297 FEFSLEQ----TNDGNVELVRRQ 315 (357)
Q Consensus 297 ~ey~Lq~----~~dG~V~lVPr~ 315 (357)
-+|.|-. ..+..|.-||.-
T Consensus 116 l~ykL~i~k~~~~~~e~~Y~P~l 138 (190)
T 4emc_A 116 MDYKLGFVKGQAQVTEVIYAPVL 138 (190)
T ss_dssp CCEEEEEC-----CCEEEEEECC
T ss_pred EEEEEeeccCCCCCceEEEeccc
Confidence 4566654 234577778864
No 188
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.03 E-value=11 Score=24.42 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14684 260 EHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 260 Er~~L~~e~~~LKqkl~~L 278 (357)
|+..|.+.+..|++++..|
T Consensus 8 endaleqkiaalkqkiasl 26 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 3334445555555555544
No 189
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.93 E-value=16 Score=27.99 Aligned_cols=23 Identities=9% Similarity=0.080 Sum_probs=11.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQ 259 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~k 259 (357)
++.|..|+.++..|..+++.|.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555554443
No 190
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=43.80 E-value=1.3e+02 Score=26.77 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 212 QLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 212 Ql~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
+++--|.-|+++...++=-.+ +|..|+.|++.++....++..|+..|.
T Consensus 77 ~L~qEr~~r~q~se~~~elq~------ri~~L~~El~~~k~~~~k~~~e~r~L~ 124 (168)
T 3o0z_A 77 ILEAERRDRGHDSEMIGDLQA------RITSLQEEVKHLKHNLEKVEGERKEAQ 124 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677776666555 456666666665554444444444433
No 191
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=43.45 E-value=98 Score=23.90 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=35.7
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 233 RKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 233 RKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
|...-..|..||.++.+++.+.+...+|-+.|..-.-.|-..+. -|+..+
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa-tYRkLL 56 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH-AYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34445677888888888888888888888877777666666664 354444
No 192
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=42.92 E-value=60 Score=31.36 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+.++..|+...+.+...+.+|...+.+|..++
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555554
No 193
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.15 E-value=46 Score=23.75 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+|-++.++.-+|++.....+.+|+.++..|..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777778888888888888888877763
No 194
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=41.94 E-value=64 Score=24.69 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=19.8
Q ss_pred cchHHHHhhhhhHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 224 KNKVAAQNCRKRKLDQ-ILSLADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 224 KNRvAAQnCRKRKLd~-I~~LEdEV~~Lk~EkekL~kEr~~L 264 (357)
||-+||.-.|--.+-+ -.+|.+|+.-|+.+..+|..|+..|
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 5556665544333222 2345555555555555555554444
No 195
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=41.91 E-value=1.6e+02 Score=25.05 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHhc----CCCCHHH-HHHHHHHHH-hccchHHHHhhhhhHHHHHHhHH-------HHHHHHHHHHHHHH
Q psy14684 193 NLPMDEFNERLSK----YDLSETQ-LSLIRDIRR-RGKNKVAAQNCRKRKLDQILSLA-------DEVKQMKDKKRHLM 258 (357)
Q Consensus 193 nLPV~EFNelLs~----~~LSeeQ-l~lIRdIRR-RgKNRvAAQnCRKRKLd~I~~LE-------dEV~~Lk~EkekL~ 258 (357)
.-+|+.|...|++ ..||+|- .+++|.++. -..-|||-.|+|..=.+.|..|+ |++..++.+.++|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLT 92 (121)
T 3lf9_A 14 DKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLT 92 (121)
T ss_dssp HHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHH
Confidence 3457777777764 6789886 467888888 44889999999999888888774 56666666666555
No 196
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.91 E-value=1.5e+02 Score=24.74 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 228 AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 228 AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
=||++=-.=..+|..||.++..-+..+++.+-|...|..++..++
T Consensus 37 E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 37 ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444456777777777777666666666666666666553
No 197
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=41.88 E-value=76 Score=24.56 Aligned_cols=43 Identities=5% Similarity=-0.069 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
..++..+..|..+..+++.+.+....+.++|-.---.|-.+|-
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455444444444444444444333334444443
No 198
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.66 E-value=78 Score=25.44 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
+++++.-+.+.++|..++......+..|+.
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555555555555555555544
No 199
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.59 E-value=93 Score=27.43 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=21.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
...|..|+.++..-..-.+.|.-|...|..+...+.+++..|.
T Consensus 81 ~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 81 EQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444455555555555555555544443
No 200
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=41.58 E-value=1.3e+02 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
+|.+|..|+.....|..+...+...+.
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333
No 201
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.52 E-value=48 Score=23.07 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 251 KDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 251 k~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
-.|+++|.+++.+-..++..||++=.+|
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4577888888888777888877765554
No 202
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=41.44 E-value=30 Score=23.71 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
++.++....+++.+|+++...|.+++..
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666666543
No 203
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.38 E-value=44 Score=30.92 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=14.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
|+....|..+|..|..+...|+.|+.+|+
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444443
No 204
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=41.27 E-value=26 Score=25.60 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=15.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
+..+.+++..|..++..|+.++..|..+
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666666665543
No 205
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=41.18 E-value=89 Score=31.28 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 228 AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 228 AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+|..=-++=++.+..||.-+.........|+.........+..|++.+..|...
T Consensus 81 ~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 81 AATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333456888888888888878888888877778888888888888877644
No 206
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=41.09 E-value=1e+02 Score=22.59 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
..|..||.++..++.+.++..+|-+.|..-.-.|-..+. -|+...
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa-tYRkLL 51 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA-TYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHH
Confidence 456778888888888888888777777666666666654 244433
No 207
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=40.97 E-value=61 Score=33.06 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=13.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHH
Q psy14684 199 FNERLSKYDLSETQLSLIRDIR 220 (357)
Q Consensus 199 FNelLs~~~LSeeQl~lIRdIR 220 (357)
-..|+..+.||+.|.+.|=++|
T Consensus 388 ~~~L~~~f~lse~Qa~aIl~mr 409 (470)
T 3ilw_A 388 RAGLIELLDIDEIQAQAILDMQ 409 (470)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCB
T ss_pred HHHHHHhcCCCHHHHHHHHHhH
Confidence 3455566677777777665554
No 208
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.53 E-value=1.2e+02 Score=24.92 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 259 QEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 259 kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
..+.....++..+.+.|+.|.-.+|
T Consensus 40 ~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 40 ELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555
No 209
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=40.20 E-value=64 Score=29.76 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=46.1
Q ss_pred hccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 222 RGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 222 RgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~V 282 (357)
+.-|-.-||.-| .+.++.|+.+......+-..|..-.+.|.+|++.|+.+|..|....
T Consensus 17 ~~~~~~~~~~~~---~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 17 KLLDPELAQSER---TEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHCTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HhcCHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 334444566554 4666778999999999999999999999999999999999987443
No 210
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.20 E-value=1.1e+02 Score=22.70 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=25.7
Q ss_pred ccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 223 GKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 223 gKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
.|||.=|...=+.|++ +|...+..-..+....+.|+.+|++.++.|.-.|..
T Consensus 23 ~knr~EaE~~y~~k~e---el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 23 AKNLQEAEEWYKSKFA---DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666666555555554 344444443333444444555555555555554443
No 211
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.11 E-value=1.6e+02 Score=24.57 Aligned_cols=84 Identities=12% Similarity=0.063 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 196 MDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 196 V~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
++.+|.++.. -.+||+..+..|...-- .+..-+.--.-+|..|...+..-......|.+...++..+...--.+|
T Consensus 8 ~~~lq~~~~q---l~~qL~k~~~~r~~Le~--~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 8 VKKLQLMLRQ---ANDQLEKTMKDKQELED--FIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655 33477766666643321 122222222234445555444444444444444444433333333333
Q ss_pred HHHHHHHhh
Q psy14684 276 SQLYKHVFN 284 (357)
Q Consensus 276 ~~L~q~Vf~ 284 (357)
..=-..|+.
T Consensus 83 t~~Re~V~~ 91 (112)
T 1x79_B 83 MQSREQVSE 91 (112)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 332333443
No 212
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=39.85 E-value=1.3e+02 Score=25.77 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHH
Q psy14684 198 EFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVK 248 (357)
Q Consensus 198 EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~ 248 (357)
-|..+|+= ||++|...|+.+..-||.+...+. +=++.-..|..+++
T Consensus 13 ~~~~~LsW--Lt~eQk~EI~kMk~~gksk~~v~~---KI~efye~l~gd~K 58 (134)
T 2xv9_A 13 SLDTHLKW--LSQEQKDELLKMKKDGKAKKELEA---KILHYYDELEGDAK 58 (134)
T ss_dssp GTTTTTTT--SCHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHTCCHHHH
T ss_pred HHHHHHHH--CCHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcccHHH
Confidence 35566665 999999999999999887766553 33444444444443
No 213
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=39.60 E-value=15 Score=32.35 Aligned_cols=16 Identities=44% Similarity=0.553 Sum_probs=14.2
Q ss_pred cCCCCHHHHHHHHHHH
Q psy14684 205 KYDLSETQLSLIRDIR 220 (357)
Q Consensus 205 ~~~LSeeQl~lIRdIR 220 (357)
.|.||+.|...|=++|
T Consensus 106 ~f~LSe~QA~AILdmR 121 (156)
T 3ku8_A 106 LYYLTEQQAQAILDLR 121 (156)
T ss_dssp EEECCHHHHHHHHTCB
T ss_pred CCCCCHHHHHHHHHhH
Confidence 5889999999998776
No 214
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=39.04 E-value=37 Score=41.16 Aligned_cols=7 Identities=0% Similarity=-0.211 Sum_probs=3.3
Q ss_pred cccccCC
Q psy14684 10 QYFYSMG 16 (357)
Q Consensus 10 ~~~~s~~ 16 (357)
-|||.++
T Consensus 1212 ~~dy~~~ 1218 (2695)
T 4akg_A 1212 YSTIVIA 1218 (2695)
T ss_dssp SCCCBCC
T ss_pred eeEEEEE
Confidence 3555443
No 215
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=39.02 E-value=42 Score=36.18 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Q psy14684 198 EFNERLSKYDLSETQLSLIRDIR 220 (357)
Q Consensus 198 EFNelLs~~~LSeeQl~lIRdIR 220 (357)
-...|+..+.||+.|.+.|=++|
T Consensus 667 ~k~~L~~~f~lse~qa~aIl~mr 689 (767)
T 2xkj_E 667 PKPVLMEHFNIDEIQAEAILELK 689 (767)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHSC
T ss_pred hHHHHHHhcCCCHHHHHHHHHhH
Confidence 45677777889999998887665
No 216
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.27 E-value=89 Score=31.08 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+...|..+...|..++..|..++.++.+++..+..
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777778888888888888888876653
No 217
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=38.18 E-value=77 Score=29.52 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHcCCCCChhhHh----------cCCHHHHHHHHhcCCCCHHHHH
Q psy14684 177 KKARALNIPIPVNDII----------NLPMDEFNERLSKYDLSETQLS 214 (357)
Q Consensus 177 ~RA~al~IPFSvdeIV----------nLPV~EFNelLs~~~LSeeQl~ 214 (357)
+-|+.++|.+|+++|- +++.+.|...|+..++|.++..
T Consensus 62 q~A~~~gi~vs~~ev~~~i~~~~~~~~~~~~~~~~~L~~~g~t~~~~~ 109 (408)
T 1m5y_A 62 QMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYR 109 (408)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHcCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHH
Confidence 4577899999998874 5788999999999999988764
No 218
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=38.10 E-value=1e+02 Score=27.63 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
..-|+.+++.|..|...+..++.++++.+..+++.++..|
T Consensus 33 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l 72 (217)
T 3aon_A 33 HKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDF 72 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777788888888888888888888888777766543
No 219
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.10 E-value=68 Score=24.21 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
|..+..|++.+..|...++.|.....+..|.++.|.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666555555555555443
No 220
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.02 E-value=44 Score=26.59 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=13.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
++++|-.|...|+.|.+.+..-+..+...+.+|.+.
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 221
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=38.01 E-value=2.3e+02 Score=25.58 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
.|..|++++..|+..++.|...+..|....+.|
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456666666666666666665555444444333
No 222
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.95 E-value=85 Score=25.13 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
.++.++.....+++.|+.|+..|..++.+
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455444444444444433
No 223
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.86 E-value=64 Score=29.98 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ---FSQL 278 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk---l~~L 278 (357)
+.+++..+..+..+...|..++.+|..++.+|++. +..|
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L 135 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL 135 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44455555666666666666666666666666666 5554
No 224
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=37.80 E-value=48 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=20.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kE 260 (357)
.||+|.+..|+.-+.+|+.+.+++..+
T Consensus 24 ~~r~DEV~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 24 AGRMDEVRTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456899999999888888888877643
No 225
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=37.80 E-value=36 Score=22.07 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
|.-|++.|.+.+..|++.+..|+
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 34444444444445555554444
No 226
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.58 E-value=79 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=14.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQ 266 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~ 266 (357)
.+||....+|......|.+|+..|++
T Consensus 13 k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555555555555554
No 227
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=37.52 E-value=1.2e+02 Score=27.00 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
..|......|+...+.|.++...|.++++.|+.+...+
T Consensus 52 ~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 52 EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888889999999999999888865544
No 228
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.51 E-value=1.1e+02 Score=21.86 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 256 HLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 256 kL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.|..|.+.|.+.+..|+.+++.|
T Consensus 24 aleselqalekklaalksklqal 46 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555554443
No 229
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.29 E-value=1.4e+02 Score=22.88 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.++...+..-..+.+.|.+-+..|..|+..|..++..|..+
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 34445555566677777777777777777777777777654
No 230
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=37.26 E-value=1.3e+02 Score=25.54 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=31.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+|++-+.++|.|+.+++.+-+.|++|.+. +-..-+..++.++..||
T Consensus 58 kklqLkse~e~E~ae~k~KYD~~lqe~es---e~~~kkK~le~~~~kV~ 103 (115)
T 3vem_A 58 KKSILKAELERKMAEVQAEFRRKFHEVEA---EHNTRTTKIEKDKNLVI 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 37888899999999999999988877642 22222334444555554
No 231
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.14 E-value=1.1e+02 Score=21.68 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
.+..|+..+..+..+...+..+...+...+..+...|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~ 44 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNT 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 232
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.13 E-value=1.2e+02 Score=23.44 Aligned_cols=20 Identities=5% Similarity=0.255 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14684 262 EYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 262 ~~L~~e~~~LKqkl~~L~q~ 281 (357)
..|..++..+...|..++..
T Consensus 59 ~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 59 QKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666543
No 233
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.13 E-value=1.6e+02 Score=24.33 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.....||..+..|....+.....+..|......|.+.+..|-..+-
T Consensus 76 ~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 76 KNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888888888888888888888888888888876654
No 234
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=37.04 E-value=81 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=15.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH
Q psy14684 253 KKRHLMQEH-EYLSQECSRVKSQFS 276 (357)
Q Consensus 253 EkekL~kEr-~~L~~e~~~LKqkl~ 276 (357)
+.++|++|+ .++++|++++|+.+=
T Consensus 8 dle~~KqEIL~E~RkElqK~K~EII 32 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKEEII 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555 667777777777653
No 235
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=36.92 E-value=53 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.++..|+.|.+.|..+=..|...+..+++.|..|...
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666666666666666666666666666543
No 236
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=36.74 E-value=55 Score=29.02 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=10.2
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDK 253 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~E 253 (357)
++.+..|+.+++.|..+
T Consensus 2 ~~~L~~iQ~e~~~l~~~ 18 (193)
T 3kyp_A 2 MQDFEDIQKDIEQLDIK 18 (193)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35566666666665554
No 237
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=36.70 E-value=73 Score=29.78 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
+|.+||+.+..+.+.-+...+.+..+...+.+|++
T Consensus 14 rIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 14 RVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655555555555555555555554443
No 238
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=36.42 E-value=45 Score=29.36 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=28.3
Q ss_pred HHHHHcCCCCChhhHhc----------CCHHHHHHHHhcCCCCHHHHH
Q psy14684 177 KKARALNIPIPVNDIIN----------LPMDEFNERLSKYDLSETQLS 214 (357)
Q Consensus 177 ~RA~al~IPFSvdeIVn----------LPV~EFNelLs~~~LSeeQl~ 214 (357)
+-|+.++|.+|+++|-. |+.++|...|...++|.++..
T Consensus 43 q~A~~~gi~vsd~ev~~~i~~~~~~~~~s~~~~~~~L~~~g~t~~~~~ 90 (252)
T 3rgc_A 43 SQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFR 90 (252)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHTTCCHHHHHHHTCC---CHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHH
Confidence 56778899999877644 488999999999999988763
No 239
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.39 E-value=1.3e+02 Score=23.35 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
..|..||.++..++.+.++..+|-+.|..-.-.|-..+
T Consensus 35 ~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35666777777777777766666665555444444444
No 240
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.04 E-value=50 Score=32.65 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
...|.++|.++..+.....+|..++..|..+...+++++..|.
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888877778888888888888887777776443
No 241
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=35.99 E-value=36 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
+||+.|+.+...|...+.+|..|..-||.-
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666554
No 242
>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head, tail-TO-tail, all alpha helical binding protein, RNA binding protein; 3.30A {Beet yellows virus}
Probab=35.99 E-value=25 Score=31.24 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=27.4
Q ss_pred hhhcchHH---HHHHHcCCCCChhhHhcCCHHHHHHHHhc
Q psy14684 169 EEQMTRDE---KKARALNIPIPVNDIINLPMDEFNERLSK 205 (357)
Q Consensus 169 ~~~~SRDE---~RA~al~IPFSvdeIVnLPV~EFNelLs~ 205 (357)
.+.+||.| +|.++++..-+-.+|... |+|||++.+-
T Consensus 31 sra~srsesllrrvkelgtns~qseisec-i~efnela~f 69 (197)
T 2cwo_A 31 SRALSRSESLLRRVKELGTNSQQSEISEC-VDEFNELASF 69 (197)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCHHHHHHH-HHHHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHhcCCCchhHHHHH-HHHHHHHhhh
Confidence 45667777 677888888887787776 8999998653
No 243
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.93 E-value=72 Score=26.82 Aligned_cols=32 Identities=6% Similarity=0.101 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
|..|++...+|+.+..++.+.+..++..+...
T Consensus 97 L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 97 LQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555443
No 244
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=35.86 E-value=96 Score=25.40 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
+++|..|+.++.--+..-..=...+..+..++.+|..++..|.+.
T Consensus 39 ~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 39 METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 466777766665543333322334445555566666666655544
No 245
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.78 E-value=1.1e+02 Score=28.37 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
|-..|..+.+.|..|+..|+.++.+|+.-
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444444443
No 246
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.75 E-value=36 Score=33.78 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.||.++..|+.+.++|..|+..+..++.++++++..+
T Consensus 36 ~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~ 72 (434)
T 4b4t_M 36 LLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNN 72 (434)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777777888888888888888777777644
No 247
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.64 E-value=1.1e+02 Score=24.94 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=18.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
..+|++|+++|..+...|. .+..+.+.||.+..-|
T Consensus 49 ~~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLE----KMQNNSKLLRNKAVQL 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHH
Confidence 3566666666666666554 3334444455544433
No 248
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=35.38 E-value=94 Score=24.84 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy14684 193 NLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHL----MQEHEYLSQEC 268 (357)
Q Consensus 193 nLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL----~kEr~~L~~e~ 268 (357)
+|+.|=|+....- ..+|+..|.++..+ +|.---..-++-=.+.+.+|+..+.+|..-..-. ..|+..=++-+
T Consensus 2 ~~s~DPF~~V~~D---~~~ql~~l~~~~~~-~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v 77 (95)
T 2c5k_T 2 NNSEDPFQQVVKD---TKEQLNRINNYITR-HNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQV 77 (95)
T ss_dssp ---CCHHHHHHHH---HHHHHHHHHHHHHH-TCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHH
T ss_pred CCCCCcHHHHHHH---HHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4666778877776 77888888776543 2220001233333334444444444444433321 11222233344
Q ss_pred HHHHHHHHHHHHH
Q psy14684 269 SRVKSQFSQLYKH 281 (357)
Q Consensus 269 ~~LKqkl~~L~q~ 281 (357)
..++.+|..|...
T Consensus 78 ~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 78 KNIKQQLDALKLR 90 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 249
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.37 E-value=1.8e+02 Score=24.20 Aligned_cols=33 Identities=3% Similarity=0.079 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
-|+..+..|..+.+.|..-+..|...++.+++.
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444444444444443
No 250
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=35.04 E-value=1.3e+02 Score=27.03 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
++.|..|+.++++|..++...+.+...+.
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433333333333333333
No 251
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=35.02 E-value=52 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=10.5
Q ss_pred cCCCCHHHHHHHHHHH
Q psy14684 205 KYDLSETQLSLIRDIR 220 (357)
Q Consensus 205 ~~~LSeeQl~lIRdIR 220 (357)
.+.||+.|...|=++|
T Consensus 417 ~f~lse~Qa~aIl~mr 432 (500)
T 3lpx_A 417 LYYLTAEQAKAIVDLQ 432 (500)
T ss_dssp ----CHHHHHHHHTCB
T ss_pred ccCCCHHHHHHHHHhH
Confidence 3889999999997775
No 252
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=34.76 E-value=58 Score=22.23 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
.|+.+-..|..++++|.+...+|...+..|
T Consensus 4 slq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 4 GVQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666778888888888888888877765
No 253
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.75 E-value=1.2e+02 Score=37.71 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=32.1
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 228 AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 228 AAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+|+.-=..+.+.+.+||+++..|+.+-+.+.+|++.|+.+++..+.+|.
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556667777777777777777777777777766666655543
No 254
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.48 E-value=1.5e+02 Score=22.55 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
+...++.++........++..|+..|.+.+..|...|..
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555444433
No 255
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.37 E-value=38 Score=28.44 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRV---KSQFSQLY 279 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L---Kqkl~~L~ 279 (357)
+|+.++.+|....++|..+...|...+..| ..++..+-
T Consensus 6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~ 46 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVR 46 (151)
T ss_dssp SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777777777 66665533
No 256
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.33 E-value=76 Score=27.45 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.|..|++...+|+.+..++.+.+..++..+...|.
T Consensus 96 ~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 96 MLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666677777777777777776655
No 257
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=34.09 E-value=39 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=21.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kE 260 (357)
.+|+|.+..||.-+++|+.+..+|..+
T Consensus 42 ~~r~DEV~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 42 AGRMDEVRTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355999999999999988888876543
No 258
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=33.94 E-value=22 Score=32.89 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=17.6
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 232 CRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 232 CRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
-|.-++....++-.+.+.+..+.+.|..|+..+++++++|+.++
T Consensus 135 FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 135 FREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 259
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=33.80 E-value=1.7e+02 Score=23.02 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.+||+.|..|+.+.+.-+.++..+..++..+-+.
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665565565555555444
No 260
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.72 E-value=2.2e+02 Score=28.58 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=17.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEY 263 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~ 263 (357)
+..|..|+..|+.++.+.++|...+.-
T Consensus 133 ~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 133 VQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777777777777766643
No 261
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.68 E-value=45 Score=36.69 Aligned_cols=9 Identities=0% Similarity=-0.200 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy14684 211 TQLSLIRDI 219 (357)
Q Consensus 211 eQl~lIRdI 219 (357)
+++..+.++
T Consensus 871 ~~L~~le~~ 879 (1184)
T 1i84_S 871 ERQQKAEAE 879 (1184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 262
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.55 E-value=79 Score=26.58 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
+|..||.|......+++...+|...|...++.+-
T Consensus 93 ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 93 KIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666655555543
No 263
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.40 E-value=1.2e+02 Score=21.78 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e 267 (357)
.+|..+...|..|+..|.+.
T Consensus 6 aqlenevaslenenetlkkk 25 (49)
T 3he5_A 6 AQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHh
Confidence 33444444444444444443
No 264
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.37 E-value=1.8e+02 Score=23.14 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+...++.+++.+..+..++..|+..|.+.+..+...|
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 265
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.01 E-value=1.2e+02 Score=24.40 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 252 DKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 252 ~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
.||++|..++..|..++..||+.+..
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444443
No 266
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.89 E-value=1.2e+02 Score=22.89 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=4.6
Q ss_pred CHHHHHHHHHH
Q psy14684 209 SETQLSLIRDI 219 (357)
Q Consensus 209 SeeQl~lIRdI 219 (357)
++.|+..+|+|
T Consensus 9 se~q~~kLKq~ 19 (58)
T 3a2a_A 9 SERQLLRLKQM 19 (58)
T ss_dssp --CHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555444
No 267
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=32.84 E-value=1.9e+02 Score=23.08 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14684 260 EHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 260 Er~~L~~e~~~LKqkl~~L~q~ 281 (357)
.+..+...+..+|..|..|..+
T Consensus 79 ~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 79 FRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3556777777777777776654
No 268
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=32.72 E-value=73 Score=26.18 Aligned_cols=25 Identities=8% Similarity=0.323 Sum_probs=15.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQ 259 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~k 259 (357)
+.++.+..|+..|..|+.+.++|..
T Consensus 13 ~~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 13 SDLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666665544
No 269
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.69 E-value=2.1e+02 Score=23.80 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
...|..|..++..|+...+.|.+||...-..+.
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777765443333
No 270
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=32.57 E-value=1.5e+02 Score=21.75 Aligned_cols=37 Identities=5% Similarity=0.108 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.+..|-.+|.+|..+...|..++...+.|..+.-++|
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666666665555555544
No 271
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.55 E-value=81 Score=27.29 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=18.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
+|..||.|......++++..+|...|...++.+-
T Consensus 93 ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 93 KIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555555555555554444443
No 272
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=32.45 E-value=37 Score=34.80 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHH
Q psy14684 178 KARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLS 214 (357)
Q Consensus 178 RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~ 214 (357)
+-+.-.-++..++|.+|+..++.++|+...||..|+.
T Consensus 55 ~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~ 91 (573)
T 3ppm_A 55 RFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVF 91 (573)
T ss_dssp HHHHHCTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHH
T ss_pred hccccCCCCChhhhhhCCHHHHHHHHHcCCCCHHHHH
Confidence 3334445677899999999999999999999999985
No 273
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=32.16 E-value=2.5e+02 Score=24.46 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=24.1
Q ss_pred chHHHHhhhhhHHH-------HHHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q psy14684 225 NKVAAQNCRKRKLD-------QILSLADEVKQMKD------------KKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 225 NRvAAQnCRKRKLd-------~I~~LEdEV~~Lk~------------EkekL~kEr~~L~~e~~~LKqk 274 (357)
||.+--+|+++=-+ .+++|++-|+.|+. +.+.+.+++..+..++..|++-
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~ 76 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEF 76 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666655333 34444444444332 2333445555555555555443
No 274
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=32.13 E-value=1.9e+02 Score=22.87 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 231 NCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 231 nCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.=|.|-.+.+..-+.|+..|+.-.+.|..-...|..-+.+|.+.-..|
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l 58 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEV 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666656555555444444444444333
No 275
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=32.04 E-value=2.1e+02 Score=23.62 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=40.6
Q ss_pred cchHHHHhhhhhHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 224 KNKVAAQNCRKRKLDQ--ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 224 KNRvAAQnCRKRKLd~--I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
|-|+=|.+|----++. ...|++-..+|-.....|..|+-.|...+..-...+..|-..|+
T Consensus 26 KkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (106)
T 1j1d_B 26 KKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87 (106)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHH
Confidence 5677788885444443 45666666677777777777777777666666666666666665
No 276
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=31.96 E-value=1.2e+02 Score=24.29 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=15.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHL 257 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL 257 (357)
+-+|.|..|+.++..++++..++
T Consensus 36 ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 36 ASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888887777766655433
No 277
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=31.75 E-value=55 Score=32.24 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=9.0
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy14684 236 KLDQILSLADEVKQMKD 252 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~ 252 (357)
+++.+..||.++..|..
T Consensus 54 rI~aLk~lQ~E~~~le~ 70 (359)
T 3fs3_A 54 TLKKLKLYQKEYYDYES 70 (359)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555555444
No 278
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=31.71 E-value=1.6e+02 Score=26.66 Aligned_cols=27 Identities=4% Similarity=0.185 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
|..+.+.|..++.+|...+..|...+.
T Consensus 81 L~~~~~~L~~~~~~L~~~~~~l~~~i~ 107 (249)
T 3qao_A 81 LDMQRHLLIEKKQRIETMLATLDLTIK 107 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 279
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=31.65 E-value=1.3e+02 Score=25.44 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy14684 264 LSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 264 L~~e~~~LKqkl~~L~q~Vf 283 (357)
+.+|+.+++.++..+.+++-
T Consensus 66 ~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 66 LERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655543
No 280
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.42 E-value=52 Score=32.34 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
..|..+...|..++..|..++.++.+++..+..
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 71 TEIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666777777777777665553
No 281
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.16 E-value=2e+02 Score=22.96 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
..+.+|+...+..+..+.++..+....+.+|...+..|-..+.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665555555555555555555555555554444
No 282
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.95 E-value=83 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.214 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
+|.+.|..|..++..|++|+..|..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 283
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=30.94 E-value=84 Score=20.21 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLM 258 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~ 258 (357)
|.+||-+|+-|...|+
T Consensus 5 lkdevgelkgevralk 20 (27)
T 3v86_A 5 LKDEVGELKGEVRALK 20 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHH
Confidence 4444444444443333
No 284
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=30.84 E-value=2.2e+02 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
|..+.+.|..++.+|...++.|.
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~ 106 (135)
T 1q06_A 84 TLEKVAEIERHIEELQSMRDQLL 106 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 285
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.81 E-value=2.2e+02 Score=23.29 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
+..++.....|..++..++.++...-+.+.
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333
No 286
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=30.51 E-value=2.4e+02 Score=23.53 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy14684 263 YLSQECSRVKSQF 275 (357)
Q Consensus 263 ~L~~e~~~LKqkl 275 (357)
.+.+.+++||+-|
T Consensus 15 ~~ekr~~RLKevF 27 (123)
T 4dzo_A 15 SAELKNQRLKEVF 27 (123)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 287
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.32 E-value=1.9e+02 Score=22.44 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.+||+.|..|+++.+.-+.++..+..++..+-+.
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666655555444
No 288
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.31 E-value=1.9e+02 Score=22.42 Aligned_cols=29 Identities=3% Similarity=-0.004 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
+..++.....|..|+.+++.++....+.+
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EY 58 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEY 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333333
No 289
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.24 E-value=1.6e+02 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhccchHH
Q psy14684 210 ETQLSLIRDIRRRGKNKVA 228 (357)
Q Consensus 210 eeQl~lIRdIRRRgKNRvA 228 (357)
|+.+.-+|+.|.+.-++++
T Consensus 103 E~svqp~R~~R~~l~~~I~ 121 (234)
T 3plt_A 103 EASVQPSRDRKEKITDEIA 121 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 290
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=30.02 E-value=1.4e+02 Score=26.27 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
|..+.+.|..++.+|...+..|...+..
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (278)
T 1r8e_A 84 YTEQERQIREKLDFLSALEQTISLVKKR 111 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666666665554
No 291
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.99 E-value=75 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=26.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECS 269 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~ 269 (357)
+-|.-.=+++..|+.+++.|++|+++|.++.+
T Consensus 154 ELi~~~L~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 154 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44666778999999999999999999988753
No 292
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=29.91 E-value=1.3e+02 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
.+..|-.+++.+-.+.-.|+.+|..+..++.++|..
T Consensus 13 ~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 13 ELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666667777777777777777777777654
No 293
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=29.71 E-value=78 Score=25.13 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=11.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQE 260 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kE 260 (357)
.|++||+++...+.+...+..+
T Consensus 45 TIDDLEDkL~~eKEK~k~i~ee 66 (77)
T 3mtu_E 45 EYNDLEEKVAHAKEENLNMHQM 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4566666555444444444443
No 294
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.65 E-value=1.6e+02 Score=21.54 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 244 ADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 244 EdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
|..+..|+.-++.|...+.+|.....++.+.+..|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34455555556655555555555555555554444
No 295
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=29.63 E-value=2e+02 Score=25.28 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
|.+|...+..-+...+.|.+.+..|..+.+.+-..+..|...|+
T Consensus 42 i~en~~~iakNqadI~~L~~dI~dLd~~v~l~~RdIgsL~ddVa 85 (157)
T 2qih_A 42 ANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVA 85 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhcchhhHHH
Confidence 66666666666677777777777777776666666777766666
No 296
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=29.38 E-value=1.5e+02 Score=29.39 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCCCCCcccceeecCCCc-EEEEecC
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSD-GNPYSPFEFSLEQTNDGN-VELVRRQ 315 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~-G~P~SP~ey~Lq~~~dG~-V~lVPr~ 315 (357)
|.+=++.|..+..++..+......+.+.+|.+|+.|-+.--..|..-+ ..-+.|++|-+.--.=-+ +++||++
T Consensus 127 L~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~~iV~~edfv~dSEyL~TllVvVPk~ 201 (392)
T 1u7l_A 127 IKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKS 201 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeeeHHHhcCHHHccCccccceEEEEEEeCc
Confidence 444466677777778888888888888888988888876544554433 456788877431111113 3788874
No 297
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=29.33 E-value=1e+02 Score=31.84 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
|+.+...++.+.+++..+..++.+...++++.+..+.
T Consensus 357 l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~ 393 (695)
T 2j69_A 357 LEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTR 393 (695)
T ss_dssp HTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555444444444333
No 298
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=29.29 E-value=1.2e+02 Score=24.34 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~ 270 (357)
|..+.+.+..|+..|+.++.+
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 299
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.25 E-value=1.4e+02 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
|..+.+.|..++.+|...++.|...
T Consensus 79 l~~~~~~l~~~i~~l~~~~~~l~~~ 103 (108)
T 2vz4_A 79 LRRQHELLSARIGKLQKMAAAVEQA 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555544444443
No 300
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=29.19 E-value=1.1e+02 Score=28.68 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
+++++|+.+..|....+.+.+..+.....+..+.+.|..|...+=
T Consensus 7 Rvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367788888889888888888888888888888888888887754
No 301
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.15 E-value=2e+02 Score=29.16 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
...|..+...|..++..|..++.++.+++..+..
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888888876653
No 302
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.15 E-value=35 Score=29.43 Aligned_cols=20 Identities=10% Similarity=0.439 Sum_probs=17.1
Q ss_pred CChhhHhcCCHHHHHHHHhc
Q psy14684 186 IPVNDIINLPMDEFNERLSK 205 (357)
Q Consensus 186 FSvdeIVnLPV~EFNelLs~ 205 (357)
++.|||.+||.+||-+|+..
T Consensus 11 ~~ld~L~~ms~~~l~~L~~a 30 (132)
T 3j20_T 11 YTLEQLMNMSLEELARLFPA 30 (132)
T ss_dssp SCHHHHHHHHHHHHHHHSCH
T ss_pred CcHHHHHcCCHHHHHHHhhH
Confidence 57899999999999998763
No 303
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.02 E-value=1.5e+02 Score=23.46 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLMQE 260 (357)
Q Consensus 245 dEV~~Lk~EkekL~kE 260 (357)
.+|.+++.+...|+.|
T Consensus 41 ~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 304
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=28.42 E-value=45 Score=25.12 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=31.8
Q ss_pred hHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHH
Q psy14684 174 RDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRD 218 (357)
Q Consensus 174 RDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRd 218 (357)
.+-....+.+| .|++.|..+++++|-..+ ++|++....|..
T Consensus 18 ~~~~kL~e~Gi-~TvedlA~~~~~eL~~i~---gise~kA~~ii~ 58 (70)
T 1wcn_A 18 DLAFKLAARGV-CTLEDLAEQGIDDLADIE---GLTDEKAGALIM 58 (70)
T ss_dssp HHHHHHHTTTC-CSHHHHHTSCHHHHHTSS---SCCHHHHHHHHH
T ss_pred HHHHHHHHcCC-CcHHHHHcCCHHHHHHcc---CCCHHHHHHHHH
Confidence 34455566665 699999999999998865 599999988743
No 305
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.21 E-value=2.5e+02 Score=23.08 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=28.5
Q ss_pred hccchHHHHhhhhhHHH-HHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 222 RGKNKVAAQNCRKRKLD-QILSLAD----EVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 222 RgKNRvAAQnCRKRKLd-~I~~LEd----EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+..-.+.++.+.+..|+ .|.++|. ++..++.....|..++..++.++...-..+..|
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556655555554 3334332 344455555555555555555555544444444
No 306
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.11 E-value=1.6e+02 Score=23.64 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
.|+.++..|+.+..+|.+++.++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666655555554
No 307
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=27.97 E-value=2.7e+02 Score=23.45 Aligned_cols=68 Identities=6% Similarity=0.038 Sum_probs=39.2
Q ss_pred HHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy14684 202 RLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQE----HEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 202 lLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kE----r~~L~~e~~~LKqkl~~ 277 (357)
+-....||++|...|..|+.+=+ .++..||.++.....+.-.+... --+....++++-...+.
T Consensus 15 vh~~L~Lt~~Q~~~leaie~~fa-------------~~r~~le~emRaan~~La~ai~~~~~~~p~V~aaid~~h~~mG~ 81 (118)
T 2y39_A 15 LHEAVPLDANEREILELKEDAFA-------------QRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGD 81 (118)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 44567899999999999986544 23345555555544444433320 02334455555555555
Q ss_pred HHHHH
Q psy14684 278 LYKHV 282 (357)
Q Consensus 278 L~q~V 282 (357)
|....
T Consensus 82 LQkeT 86 (118)
T 2y39_A 82 LQRAT 86 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 308
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.95 E-value=2.4e+02 Score=23.32 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=43.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 198 EFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 198 EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
..+.+|.. .||..|..+. ....-|..|-.--+.-...|+.++.+-. +-.+.+.+|.-|+..|+++|..
T Consensus 18 NvT~lLq~-qLT~Aq~~l~-------~~eaQAaTCNqTV~tL~~SL~kekaq~q----~qq~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 18 NTTHLLQR-QLTRTQDSLL-------QAETQANSCNLTVVTLQESLEKKVSQAL----EQQARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHH-HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455543 5777776653 2356678888877777777777766532 2223456777777777777765
Q ss_pred HH
Q psy14684 278 LY 279 (357)
Q Consensus 278 L~ 279 (357)
+.
T Consensus 86 a~ 87 (99)
T 3ni0_A 86 LR 87 (99)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 309
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=27.89 E-value=85 Score=26.97 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
++|..||+|.-+|.....+-..|+..|...+..|+.+
T Consensus 72 ~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gK 108 (133)
T 1j1d_C 72 ARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcc
Confidence 4455666666666555555555555555555555443
No 310
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=27.71 E-value=2e+02 Score=22.26 Aligned_cols=27 Identities=33% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhhHHHH
Q psy14684 211 TQLSLIRDIRRRGKNKVAAQNCRKRKLDQ 239 (357)
Q Consensus 211 eQl~lIRdIRRRgKNRvAAQnCRKRKLd~ 239 (357)
+|++.-|+-= .|||-+|-.|=+||.-.
T Consensus 31 ~e~~~Ak~~~--~knK~~Al~aLkrKK~~ 57 (79)
T 4abm_A 31 QELTAAKKHG--TKNKRAALQALKRKKRY 57 (79)
T ss_dssp HHHHHHHHHT--TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HcCHHHHHHHHHHHhHH
Confidence 4555554432 58888999998887654
No 311
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=27.49 E-value=2e+02 Score=21.84 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.|.+-|=+|+-|...|.+|...+.+.+.+-...=..|-.-|...+.
T Consensus 4 SLVDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k 49 (61)
T 3l4f_A 4 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777788888877777777777777766666666655554444
No 312
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=27.49 E-value=1.5e+02 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
+..|-.+++.+-.+.-.|+.++..+..++.++|..
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777777777777777777776653
No 313
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=27.42 E-value=3.1e+02 Score=23.93 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=5.6
Q ss_pred HhccchHHHHhhh
Q psy14684 221 RRGKNKVAAQNCR 233 (357)
Q Consensus 221 RRgKNRvAAQnCR 233 (357)
+|.+=++---+||
T Consensus 152 KR~~k~lDyD~~~ 164 (251)
T 2fic_A 152 KRGRKLVDYDSAR 164 (251)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHH
Confidence 3444444444443
No 314
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=27.38 E-value=1.4e+02 Score=23.40 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
+.+|-.+++.+-.+.-.|+.++..+..++.++|..
T Consensus 14 L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 14 IDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666677777777777777777754
No 315
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.31 E-value=88 Score=30.87 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.+|...++.|+.+.+-|..|...++.++..++.++..+..++- .++
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~-~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVK-RIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHc
Confidence 5677888888888888888888888888888888887777764 444
No 316
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.31 E-value=1.7e+02 Score=20.89 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 249 QMKDKKRHLM------QEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 249 ~Lk~EkekL~------kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.|+.|.+.|+ .|...|..|++.|..++..|...
T Consensus 4 alkselqalkkegfspeelaaleselqalekklaalksk 42 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 35677788888888888777644
No 317
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=27.28 E-value=54 Score=33.58 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=11.5
Q ss_pred HHHhcCCCCHHHHHHHHHH
Q psy14684 201 ERLSKYDLSETQLSLIRDI 219 (357)
Q Consensus 201 elLs~~~LSeeQl~lIRdI 219 (357)
.|++++.||+.|.+.|=++
T Consensus 404 ~L~~~f~lse~qa~~IL~m 422 (496)
T 2nov_A 404 NLKVSYDFTEEQAEAIVTL 422 (496)
T ss_dssp SCCC-CCCCHHHHHHHHTC
T ss_pred HHHHhcCCCHHHHHHHHhC
Confidence 3445577888877666444
No 318
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.26 E-value=45 Score=31.63 Aligned_cols=83 Identities=25% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhh-hccC--CC-----------CCCCCCcc
Q psy14684 237 LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRV----KSQFSQLYKHVFN-ALRD--SD-----------GNPYSPFE 298 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L----Kqkl~~L~q~Vf~-~LrD--~~-----------G~P~SP~e 298 (357)
.+.|..|+.+...|+.|.++|.+++..+.+...+. +..+ .+|++... ++.- .+ .+|-.+-.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~-~~~~~~LGl~ie~~~~d~lkf~F~~id~~d~~re~~ 262 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSA-DLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFM 262 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH-HHHHHHSCCCCC----------CCCC---CCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHcceEEEeccCCeEEEEEEecCCCCCCceEE
Confidence 55677777777777777777777766666553332 2222 34544332 1111 11 12222223
Q ss_pred cceeecCCCcEEEEecCCCCCCC
Q psy14684 299 FSLEQTNDGNVELVRRQPPHLAS 321 (357)
Q Consensus 299 y~Lq~~~dG~V~lVPr~~~~~~~ 321 (357)
+.|..+ +|..+-|....|.+-.
T Consensus 263 f~l~~~-~~~~Y~v~~c~P~l~~ 284 (315)
T 2ve7_A 263 FSLHLN-EARDYEVSDSAPHLEG 284 (315)
T ss_dssp -----------------------
T ss_pred EEEEec-CCCceEEEecCCCCcc
Confidence 344433 2778888888887653
No 319
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=27.17 E-value=2.5e+02 Score=23.99 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=40.2
Q ss_pred HhccchHHHHhhhhhHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 221 RRGKNKVAAQNCRKRKLDQ--ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 221 RRgKNRvAAQnCRKRKLd~--I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.-.|-|+=|.+|---.++. ...|++-..+|-.....|..|+-.|......-...+..|-..|+
T Consensus 39 ~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~ 103 (133)
T 1j1d_C 39 RGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (133)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHH
Confidence 3456788899996665554 46666666667676777777776666555555555555555554
No 320
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.86 E-value=1.7e+02 Score=23.68 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=24.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+..|.....+++.+.+.|...+..|...+.+++.-++.|
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l 41 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666655554
No 321
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=26.79 E-value=58 Score=26.44 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=9.2
Q ss_pred eeecCCCcEEEEec
Q psy14684 301 LEQTNDGNVELVRR 314 (357)
Q Consensus 301 Lq~~~dG~V~lVPr 314 (357)
+-.+..|.-++|+-
T Consensus 53 iVk~s~g~~~~V~v 66 (109)
T 2wg5_A 53 VVKSSTGPKFVVNT 66 (109)
T ss_dssp EEEETTSCEEEECB
T ss_pred EEEeCCCCEEEEEc
Confidence 44466777777766
No 322
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=26.78 E-value=1.2e+02 Score=27.51 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 245 DEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 245 dEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
.=..-|+.+++.|..|...+..++.++++.+..+++.++..|.
T Consensus 23 rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~ 65 (223)
T 3a5c_G 23 KGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALL 65 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345588888888999999999999999999888888775544
No 323
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=26.73 E-value=51 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHhcc
Q psy14684 207 DLSETQLSLIRDIRRRGK 224 (357)
Q Consensus 207 ~LSeeQl~lIRdIRRRgK 224 (357)
.||+++..+|+..||-.|
T Consensus 3 els~~ekaRlrRERR~aK 20 (38)
T 3zs9_C 3 ELTEAEKRRLLRERRQKK 20 (38)
T ss_dssp -CCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 489999999998887654
No 324
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.67 E-value=1.8e+02 Score=22.28 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=19.3
Q ss_pred hHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVK---QMKDKKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 235 RKLd~I~~LEdEV~---~Lk~EkekL~kEr~~L~~e~~~ 270 (357)
.|++...-|+.-|+ .|+.+.+.|..|+..|..++++
T Consensus 37 ~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 37 AKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666665554 3555555555555444444433
No 325
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=26.54 E-value=2.4e+02 Score=28.57 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14684 264 LSQECSRVKSQFSQLYKHV 282 (357)
Q Consensus 264 L~~e~~~LKqkl~~L~q~V 282 (357)
|...++.|+.+|..|...|
T Consensus 173 L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 173 LRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 326
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.28 E-value=2.2e+02 Score=21.89 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14684 257 LMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 257 L~kEr~~L~~e~~~LKqk 274 (357)
|..++..+..++..+-.+
T Consensus 61 l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 61 VLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 327
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=26.17 E-value=2.6e+02 Score=22.59 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=0.0
Q ss_pred cCCCcE
Q psy14684 304 TNDGNV 309 (357)
Q Consensus 304 ~~dG~V 309 (357)
++||..
T Consensus 140 ~~~G~~ 145 (157)
T 2fup_A 140 DSRGGT 145 (157)
T ss_dssp ------
T ss_pred CCCCCc
Confidence 455543
No 328
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.10 E-value=2.5e+02 Score=22.40 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl 275 (357)
.|..||.++.+++.+.++..+|-..|..-.-.|...+
T Consensus 45 ~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EI 81 (95)
T 3mov_A 45 MLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEI 81 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444444444333
No 329
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=25.99 E-value=1.7e+02 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
||+.|+++-.+.=.+..|++++++-+..|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~L 47 (125)
T 4g2k_A 19 IEDKIEEILSKIYHIENEIARIKKLIGNL 47 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444443333333333443333333333
No 330
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.89 E-value=3.4e+02 Score=23.83 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.|++|+..+.--.+|+..|++++..+..+|.
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence 3444555554445555555555555554443
No 331
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=25.83 E-value=58 Score=26.69 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=9.8
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHH
Q psy14684 229 AQNCRKRKLDQILSLADEVKQMK 251 (357)
Q Consensus 229 AQnCRKRKLd~I~~LEdEV~~Lk 251 (357)
|..|=..|-+.|+.|..++..++
T Consensus 14 aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 14 AEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333334444444444444433
No 332
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.77 E-value=29 Score=31.95 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy14684 245 DEVKQMKDKKRHLM 258 (357)
Q Consensus 245 dEV~~Lk~EkekL~ 258 (357)
.|.+.|++|+.+|.
T Consensus 26 ~eN~~Lk~e~~~l~ 39 (255)
T 2j5u_A 26 TENQHLKERLEELA 39 (255)
T ss_dssp CTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 333
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.76 E-value=2.1e+02 Score=27.37 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFSQ 277 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~ 277 (357)
+..+.+.++|++|++.++.++.++..++..
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 334444555555555555555555555543
No 334
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.68 E-value=1.1e+02 Score=27.25 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 254 KRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 254 kekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
.++|..++..|.+++..|...+..|-
T Consensus 58 ~~~L~~~~~~Le~~~~~L~~~i~~l~ 83 (174)
T 2p22_A 58 KNHLRAVEQAIEQTMHSLNAQIDVLT 83 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 335
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=25.67 E-value=1.7e+02 Score=24.11 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
+...+|-+.+..|..++=.|...+..-..++.+|+.++..|
T Consensus 49 e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 49 DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
No 336
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=25.57 E-value=72 Score=34.03 Aligned_cols=8 Identities=13% Similarity=0.131 Sum_probs=3.5
Q ss_pred hccchHHH
Q psy14684 222 RGKNKVAA 229 (357)
Q Consensus 222 RgKNRvAA 229 (357)
..+++-.|
T Consensus 601 ~s~~~~~a 608 (692)
T 2xcs_B 601 ESDTDKVA 608 (692)
T ss_dssp TCSSHHHH
T ss_pred hCCCHHHH
Confidence 44444333
No 337
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.56 E-value=1.9e+02 Score=22.18 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14684 251 KDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFN 284 (357)
Q Consensus 251 k~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~ 284 (357)
..+..+|.+........+.+.|.++.+|...|+.
T Consensus 16 ~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLk 49 (65)
T 3t97_B 16 SEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444445556666677777777777666653
No 338
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.32 E-value=1.2e+02 Score=27.26 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14684 229 AQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHE 262 (357)
Q Consensus 229 AQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~ 262 (357)
|-+|-.+-...|+.||+++...+.+...+..|..
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666666555555555554433
No 339
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.25 E-value=90 Score=22.10 Aligned_cols=29 Identities=3% Similarity=0.138 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
.+|....+.|.+.+..|...++.|...|+
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555444444455544444444443
No 340
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.19 E-value=2.4e+02 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 247 VKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 247 V~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
-..|..+.+.+..|+..|+.+...|+.-
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555554444433
No 341
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=25.16 E-value=1.6e+02 Score=22.42 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=25.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
+.+|-.+++.+-.+.-.|+.++..+..++.++|..
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777888887777764
No 342
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=24.90 E-value=2.1e+02 Score=30.01 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=11.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLM 258 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~ 258 (357)
..+..|+..+.+|..+++.|.
T Consensus 401 ~~l~~~~~~~~~~~~~~~~~~ 421 (854)
T 1qvr_A 401 EEIDALERKKLQLEIEREALK 421 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555554443
No 343
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=24.81 E-value=62 Score=26.26 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 257 LMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 257 L~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
|+.++..|++++..+++++..|.
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455556666666666554
No 344
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.76 E-value=3.6e+02 Score=25.66 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 252 DKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 252 ~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.++.+-++.+.+|..++.+|.++|+.+.-+|-
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445566677777777777776665554
No 345
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.71 E-value=1.5e+02 Score=27.14 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=9.0
Q ss_pred CCCCCCCCCccc
Q psy14684 288 DSDGNPYSPFEF 299 (357)
Q Consensus 288 D~~G~P~SP~ey 299 (357)
++.|.|++|+.+
T Consensus 162 ~~~Ge~FDP~~H 173 (213)
T 4ani_A 162 EAVGKPFDPYLH 173 (213)
T ss_dssp CCSSSCCCTTTE
T ss_pred CCCCCCCCHHHc
Confidence 567999999644
No 346
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.62 E-value=1.7e+02 Score=22.42 Aligned_cols=20 Identities=5% Similarity=0.159 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy14684 264 LSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 264 L~~e~~~LKqkl~~L~q~Vf 283 (357)
|.+.++.|...|+.|-..+-
T Consensus 37 L~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 37 NNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55556666666665554443
No 347
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.62 E-value=1.1e+02 Score=25.17 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14684 251 KDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 251 k~EkekL~kEr~~L~~e~~~L 271 (357)
..+.+.|+.++..|..|+.++
T Consensus 95 ~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 95 KEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444443
No 348
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=24.22 E-value=1.3e+02 Score=29.93 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=19.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 236 KLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 236 KLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
++..+..|+.++..|..+ +.+++-+|..++..||+.+|
T Consensus 95 rI~aLk~lQ~e~~~le~e----------f~~ev~eLE~Ky~~~~~PLy 132 (417)
T 2ayu_A 95 KLLSLKTLQSELFEVEKE----------FQVEMFELENKFLQKYKPIW 132 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444432 33455555556666666555
No 349
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.19 E-value=1.3e+02 Score=23.15 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy14684 266 QECSRVKSQF 275 (357)
Q Consensus 266 ~e~~~LKqkl 275 (357)
.++.+|+.++
T Consensus 39 ~eI~eLr~~L 48 (67)
T 1zxa_A 39 EEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 350
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=24.00 E-value=33 Score=24.81 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHL 257 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL 257 (357)
..|..||.+|..|+...+.|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666777666666655544
No 351
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=23.91 E-value=2.2e+02 Score=26.37 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=22.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKDKKRHLMQEHEYLSQE 267 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e 267 (357)
.-.+.+..|+.++..|..+.+.+..++..+...
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777666655
No 352
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=23.85 E-value=1.1e+02 Score=20.36 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 256 HLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 256 kL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+|.+|..+...+.-+|.+.+.+|-.
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555666666666666666665543
No 353
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.77 E-value=20 Score=29.58 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 248 KQMKDKKRHLMQEHEYLSQECSRVKSQFS 276 (357)
Q Consensus 248 ~~Lk~EkekL~kEr~~L~~e~~~LKqkl~ 276 (357)
++|..+.+++..++..|+..+..|..++.
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544
No 354
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.45 E-value=3.2e+02 Score=22.87 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14684 260 EHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 260 Er~~L~~e~~~LKqkl~~L~ 279 (357)
++..|...+.+||.++..+.
T Consensus 83 ~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 83 AVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444
No 355
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=23.41 E-value=3.2e+02 Score=23.90 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
-|+..+..|.++.++|.+-+..|...+..++
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444444444444443
No 356
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=23.20 E-value=1.7e+02 Score=23.04 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=18.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
+.+|-.+++.+-.+.-.|+.++..+..++.++|.
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~ 40 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKL 40 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555553
No 357
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=22.98 E-value=51 Score=27.21 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=10.7
Q ss_pred HHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy14684 237 LDQILSLADEVKQMKDK---KRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 237 Ld~I~~LEdEV~~Lk~E---kekL~kEr~~L~~e~~~L 271 (357)
++.|..|+.++..|..+ +.+|..++..|...+++|
T Consensus 73 ieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 73 VDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666543 233334444444444333
No 358
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.84 E-value=1.1e+02 Score=25.43 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=11.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEH 261 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr 261 (357)
+.+..|.++++.|+.+.++|+.+.
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 359
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=22.62 E-value=3.2e+02 Score=22.46 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=41.5
Q ss_pred HHHHHHHHhccchHHHHhhhhhHHHHHHhHH---HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH
Q psy14684 214 SLIRDIRRRGKNKVAAQNCRKRKLDQILSLA---DEVKQM-------------------KDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 214 ~lIRdIRRRgKNRvAAQnCRKRKLd~I~~LE---dEV~~L-------------------k~EkekL~kEr~~L~~e~~~L 271 (357)
..+..+..+=.+-...-.||+++|+....+. .++..+ ....+.|+++...+..++...
T Consensus 79 ~~~~~l~~~w~~L~~~~~~R~~~Le~~~~~~~f~~~~~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~ 158 (213)
T 1cun_A 79 QRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVH 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666778888888754433 222221 123345566667777777777
Q ss_pred HHHHHHHHHHHh
Q psy14684 272 KSQFSQLYKHVF 283 (357)
Q Consensus 272 Kqkl~~L~q~Vf 283 (357)
...+..|...+-
T Consensus 159 ~~~i~~l~~~~~ 170 (213)
T 1cun_A 159 KDRVNDVCANGE 170 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
No 360
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.55 E-value=1.4e+02 Score=28.22 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKS 273 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKq 273 (357)
..+.+++.|..+++.|..|+++|.+++..++.
T Consensus 182 ~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 182 VDAFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567777777777777777777666555444
No 361
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.52 E-value=96 Score=21.69 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14684 246 EVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 246 EV~~Lk~EkekL~kEr~~L 264 (357)
+|..|+.+.+.|+.|+.+|
T Consensus 16 Qi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 362
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.49 E-value=4.9e+02 Score=26.81 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 240 ILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 240 I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
..+||..+.-|+.....-..-+..|+..++.++.++..|-..|-
T Consensus 113 S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 113 STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444455555555555555555555544
No 363
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.34 E-value=2.8e+02 Score=21.61 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=36.4
Q ss_pred chHHHHhhhhhHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 225 NKVAAQNCRKRKLD---QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 225 NRvAAQnCRKRKLd---~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
-+.+|...|.|=-+ ....+|.++..|+...+.+---+..|...+..|++.+.-|
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665433 3456777777777777777777777777777777776644
No 364
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=22.30 E-value=3e+02 Score=23.39 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=37.7
Q ss_pred hhhhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHH-hccchHHHHhhhhhHHHHHHhH---
Q psy14684 168 EEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRR-RGKNKVAAQNCRKRKLDQILSL--- 243 (357)
Q Consensus 168 ~~~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRR-RgKNRvAAQnCRKRKLd~I~~L--- 243 (357)
-+..+.|=..--..+.||||.+| -+ .+++|.++. -..-|||-.|.|..=++.+..|
T Consensus 24 ~~~~~n~~~~~~~~IRl~iPTEE----RR----------------keLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd 83 (123)
T 3lhp_S 24 VEAFKNKLDKFKAAVRKVFPTEE----RI----------------KDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKD 83 (123)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHH----HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhcCCCeEEeeCCCHH----HH----------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhc
Confidence 34445554444556777777211 12 234444554 2355666666666656666655
Q ss_pred ----HHHHHHHHHHHHHHH
Q psy14684 244 ----ADEVKQMKDKKRHLM 258 (357)
Q Consensus 244 ----EdEV~~Lk~EkekL~ 258 (357)
|+++..++.+.++|.
T Consensus 84 ~eiSEDe~k~~e~eIQKLT 102 (123)
T 3lhp_S 84 KEINWFDISQSLWDVQKLT 102 (123)
T ss_dssp TTSCGGGHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 345555555555554
No 365
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.28 E-value=3.3e+02 Score=22.71 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAL 286 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~L 286 (357)
-+.+...|......-...+..|++.|.++...|-..|
T Consensus 43 ~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL 79 (112)
T 1x79_B 43 SSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555667777777777777666544
No 366
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=22.02 E-value=3.6e+02 Score=22.72 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=3.4
Q ss_pred cCCCCCC
Q psy14684 287 RDSDGNP 293 (357)
Q Consensus 287 rD~~G~P 293 (357)
.-+.|+|
T Consensus 118 ~v~tg~p 124 (151)
T 2pih_A 118 ITSTGGD 124 (151)
T ss_dssp HHHTCCC
T ss_pred cCCCCCC
Confidence 3455554
No 367
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.86 E-value=1.8e+02 Score=22.59 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 243 LADEVKQMKDKKRHLMQEHEYLS 265 (357)
Q Consensus 243 LEdEV~~Lk~EkekL~kEr~~L~ 265 (357)
|+..+..|..+.++|..-+..|.
T Consensus 79 l~~~~~~l~~~i~~l~~~~~~l~ 101 (108)
T 2vz4_A 79 LRRQHELLSARIGKLQKMAAAVE 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 368
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.44 E-value=2.1e+02 Score=27.69 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLM-----QEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~-----kEr~~L~~e~~~LKqkl~~L~q 280 (357)
.|..|+.++..|..+++.+. ....+|..+..+++++++.+..
T Consensus 395 ~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~ 441 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKK 441 (468)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888877776554 3345677777777777776653
No 369
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=21.41 E-value=3.7e+02 Score=22.66 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=35.5
Q ss_pred HHHHHHHhccchHHHHhhhhhHHHHHHhHH---HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 215 LIRDIRRRGKNKVAAQNCRKRKLDQILSLA---DEVKQ-------------------MKDKKRHLMQEHEYLSQECSRVK 272 (357)
Q Consensus 215 lIRdIRRRgKNRvAAQnCRKRKLd~I~~LE---dEV~~-------------------Lk~EkekL~kEr~~L~~e~~~LK 272 (357)
.+..++.+-.+=..+-.+|+.+|++...|. .++.. -....+.|+++...+..++....
T Consensus 93 ~l~~L~~~w~~L~~~~~~R~~~L~q~l~l~~F~~d~~~~~~WL~~~e~~L~~~~~g~s~~~ve~ll~~h~~f~~~l~~~~ 172 (218)
T 3fb2_A 93 KLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQE 172 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 344455555555666778888888755543 22222 12234456666667777787777
Q ss_pred HHHHHHHHHHh
Q psy14684 273 SQFSQLYKHVF 283 (357)
Q Consensus 273 qkl~~L~q~Vf 283 (357)
.++..|....-
T Consensus 173 ~~v~~l~~~~~ 183 (218)
T 3fb2_A 173 EKIAALQAFAD 183 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777765443
No 370
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.35 E-value=3.1e+02 Score=21.93 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYL 264 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L 264 (357)
....|..+|..+..+...|+.|+.+|
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 371
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=21.27 E-value=2.5e+02 Score=25.42 Aligned_cols=18 Identities=11% Similarity=0.477 Sum_probs=10.1
Q ss_pred hHHHHHHhHHHHHHHHHH
Q psy14684 235 RKLDQILSLADEVKQMKD 252 (357)
Q Consensus 235 RKLd~I~~LEdEV~~Lk~ 252 (357)
+.++.+..++.+++.|..
T Consensus 30 ~~l~~L~~iQ~e~~~l~~ 47 (225)
T 2e50_A 30 EAIEHIDEVQNEIDRLNE 47 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335566666666665544
No 372
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=20.95 E-value=1.3e+02 Score=19.83 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14684 263 YLSQECSRVKSQFSQLY 279 (357)
Q Consensus 263 ~L~~e~~~LKqkl~~L~ 279 (357)
.|..|..+|+.+++.|.
T Consensus 10 sleaenkqlkakveell 26 (31)
T 1p9i_A 10 SLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 373
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.92 E-value=2.9e+02 Score=21.21 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYK 280 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q 280 (357)
+.-...+.++..++.....|..++..++.++....+.+..|.+
T Consensus 19 e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 19 EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=20.92 E-value=1.6e+02 Score=25.94 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=16.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEY 263 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~ 263 (357)
+.|.+|+.+++.|..+.+.-+.|..-
T Consensus 11 ~~ia~L~~D~~s~~~eleEnqeEL~i 36 (167)
T 4gkw_A 11 DEVADLKQDTESLQKQLEENQEELEI 36 (167)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766665555433
No 375
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.85 E-value=2.5e+02 Score=29.40 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q psy14684 275 FSQLYKHVF 283 (357)
Q Consensus 275 l~~L~q~Vf 283 (357)
|+.+.+++-
T Consensus 178 Y~~~QKQLe 186 (562)
T 3ghg_A 178 YEDQQKQLE 186 (562)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 376
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.83 E-value=3.5e+02 Score=22.18 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14684 249 QMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287 (357)
Q Consensus 249 ~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~Lr 287 (357)
..+-..++|.+|-.....+-+.+..++.+..+..+...+
T Consensus 88 ~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~~ar 126 (130)
T 2dnx_A 88 QQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARSG 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445567888888888888888888888777766665554
No 377
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=20.75 E-value=3.2e+02 Score=24.15 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 251 KDKKRHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 251 k~EkekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.....+|.+++.....++...|.++..++++
T Consensus 115 ~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 115 FQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 378
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.64 E-value=1.8e+02 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 238 DQILSLADEVKQMKDKKRHLMQEHEYLSQECSRV 271 (357)
Q Consensus 238 d~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~L 271 (357)
++|..||+|.=+|.....+-..|+..|...+..|
T Consensus 56 ~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 56 QTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 4556666666666555554444444444444443
No 379
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=20.56 E-value=2.1e+02 Score=25.88 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 241 LSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQ 274 (357)
Q Consensus 241 ~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqk 274 (357)
..|+..+..|..+.++|..-+..|...+..++..
T Consensus 79 ~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~ 112 (249)
T 3qao_A 79 VALDMQRHLLIEKKQRIETMLATLDLTIKNEKGE 112 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455666666666666666666666666666554
No 380
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.53 E-value=1.8e+02 Score=36.18 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 242 SLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 242 ~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.+|.++...+.+...++.++.++..++++|+.+|+.+
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555555443
No 381
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.48 E-value=2.5e+02 Score=23.08 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14684 253 KKRHLMQEHEYLSQECSR 270 (357)
Q Consensus 253 EkekL~kEr~~L~~e~~~ 270 (357)
|.++|+.++.+|.+.++.
T Consensus 19 e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 382
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=20.41 E-value=1.6e+02 Score=22.48 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14684 254 KRHLMQEHEYLSQECSR 270 (357)
Q Consensus 254 kekL~kEr~~L~~e~~~ 270 (357)
.++|++++-.|+-++..
T Consensus 46 l~~LKk~KL~LKDeI~~ 62 (76)
T 1zhc_A 46 VSHMKKQKLKLKDEIHS 62 (76)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 33333333333333333
No 383
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.41 E-value=2.5e+02 Score=25.28 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14684 259 QEHEYLSQECSRVKSQF 275 (357)
Q Consensus 259 kEr~~L~~e~~~LKqkl 275 (357)
.++..+..++..++..+
T Consensus 128 a~l~~~~a~l~~a~a~l 144 (341)
T 3fpp_A 128 AQIGTIDAQIKRNQASL 144 (341)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 384
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.37 E-value=1.3e+02 Score=29.29 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCCC
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL--YKHVFNALRDSDGNPY 294 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L--~q~Vf~~LrD~~G~P~ 294 (357)
+|.+|+.++..+...+..|..+..+|..++.+|..+--.+ ++....+|++-.|-.+
T Consensus 4 ~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~ 61 (302)
T 3ibp_A 4 MIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEF 61 (302)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcC
Confidence 5678888888888888888888888888888888775433 2345566766555443
No 385
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=20.37 E-value=3.3e+02 Score=23.96 Aligned_cols=27 Identities=22% Similarity=0.173 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 255 RHLMQEHEYLSQECSRVKSQFSQLYKH 281 (357)
Q Consensus 255 ekL~kEr~~L~~e~~~LKqkl~~L~q~ 281 (357)
.++.+++.....++...|.++..++++
T Consensus 126 ~k~~k~~~~~~~~l~KaK~~Y~~~~~e 152 (305)
T 2efl_A 126 RKAQQHIETCWKQLESSKRRFERDCKE 152 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 386
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=20.35 E-value=2.3e+02 Score=25.34 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHH
Q psy14684 198 EFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKL 237 (357)
Q Consensus 198 EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKL 237 (357)
.|+.=|.. |.+.++..|...|++.-++.-.--+-+.|+
T Consensus 138 ~~l~pl~~--~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~ 175 (256)
T 1zww_A 138 NFIDPLQN--LHDKDLREIQHHLKKLEGRRLDFGYKKKRQ 175 (256)
T ss_dssp HTHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444443 344567777777776655544443333333
No 387
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=20.35 E-value=5.9e+02 Score=24.61 Aligned_cols=102 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHcCC-----CCChhhHh---------cCCHHHHHHHHhcCCCCHHHHHHHHHHHHhcc--chHHHHhhhhhHHH
Q psy14684 175 DEKKARALNI-----PIPVNDII---------NLPMDEFNERLSKYDLSETQLSLIRDIRRRGK--NKVAAQNCRKRKLD 238 (357)
Q Consensus 175 DE~RA~al~I-----PFSvdeIV---------nLPV~EFNelLs~~~LSeeQl~lIRdIRRRgK--NRvAAQnCRKRKLd 238 (357)
|-+||..++| .+|.++|+ .|+++-+..+++..+ |++|+..|+.-..-.+ +.++-.-==--.+.
T Consensus 88 d~kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~P-t~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~ 166 (402)
T 4eah_A 88 EANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLP-TEAEVKLLRQYERERQPLEELAAEDRFMLLFS 166 (402)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCC-CHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCC-CHHHHHHHHHhhccCCchhhccHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 239 QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQL 278 (357)
Q Consensus 239 ~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L 278 (357)
.|..++..+..|.-..+ .......+...+..+..-+.+|
T Consensus 167 ~ip~~~~Rl~~l~f~~~-f~~~~~~l~~~l~~v~~A~~~l 205 (402)
T 4eah_A 167 KVERLTQRMAGMAFLGN-FQDNLQMLTPQLNAIIAASASV 205 (402)
T ss_dssp HSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
No 388
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=20.07 E-value=2.6e+02 Score=25.39 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=32.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14684 234 KRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVF 283 (357)
Q Consensus 234 KRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf 283 (357)
.||.+-|..|...+..|+.+.+.|..|...- +.+...+..+.+++|
T Consensus 15 ~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N----~~lG~~vea~V~~~c 60 (190)
T 3thf_A 15 QKMDELIKHLNQKIVSLKREQQTISEECSAN----DRLGQDLFAKLAEKV 60 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHh
Confidence 5778899999999999999999888776543 344444444444444
No 389
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.02 E-value=3.1e+02 Score=21.28 Aligned_cols=8 Identities=0% Similarity=0.231 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy14684 269 SRVKSQFS 276 (357)
Q Consensus 269 ~~LKqkl~ 276 (357)
..|..++.
T Consensus 73 ~eLE~~l~ 80 (89)
T 3bas_A 73 YHLENEVA 80 (89)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 390
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.02 E-value=3.2e+02 Score=24.26 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=12.5
Q ss_pred cCCHHHHHHHHhcCCCCHHHHH
Q psy14684 193 NLPMDEFNERLSKYDLSETQLS 214 (357)
Q Consensus 193 nLPV~EFNelLs~~~LSeeQl~ 214 (357)
...++.||+.++. =++|+.
T Consensus 51 r~AieAF~E~ik~---FeeQ~~ 69 (170)
T 3l4q_C 51 RTAIEAFNETIKI---FEEQGQ 69 (170)
T ss_dssp HHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHH
Confidence 3457788888886 456654
No 391
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.00 E-value=2e+02 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14684 250 MKDKKRHLMQEHEYLSQECSRVKSQFSQLY 279 (357)
Q Consensus 250 Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~ 279 (357)
|+++.++|..|++.+..++..-+..|..+.
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F~~~~ 83 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAFQAHL 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777665443
Done!