RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14684
         (357 letters)



>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
          Length = 74

 Score =  117 bits (294), Expect = 1e-33
 Identities = 29/70 (41%), Positives = 42/70 (60%)

Query: 171 QMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQ 230
           + ++DE+ A    +P+    I  + + E  + L    LSE Q  LIR IRRRGKNKVAA+
Sbjct: 2   RQSKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAAR 61

Query: 231 NCRKRKLDQI 240
            CR+R+ D+ 
Sbjct: 62  TCRQRRTDRH 71


>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
           flexneri [TaxId: 623]}
          Length = 247

 Score = 29.1 bits (65), Expect = 0.70
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 17/105 (16%)

Query: 161 DFAARKSEEEQMTRDEKKARALNIPIPVNDIIN----LPMDEFNERLSK----------- 205
           DF     E   +  D +  R L  P  V  +++    + M    E++             
Sbjct: 63  DFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMP-RMEKIMAAAGPLAVTFHR 121

Query: 206 -YDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQ 249
            +D+    L  + ++   G  +V     +   L  +  + + +  
Sbjct: 122 AFDMCANPLYTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAH 166


>d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi
           [TaxId: 1708]}
          Length = 366

 Score = 28.4 bits (63), Expect = 1.5
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 7/85 (8%)

Query: 233 RKRKLDQILSLADEVKQMKDKK-----R--HLMQEHEYLSQECSRVKSQFSQLYKHVFNA 285
               LD I  LAD  ++          R  H      +          ++ +LY+     
Sbjct: 140 LVAYLDDIAELADASRRDDGTLIPIVFRPWHENAGSWFWWGAAYGSPGEYQELYRFTVEY 199

Query: 286 LRDSDGNPYSPFEFSLEQTNDGNVE 310
           LRD  G     + +       GN +
Sbjct: 200 LRDVKGVSNFLYAWGPGGGFGGNRD 224


>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 27.4 bits (61), Expect = 2.3
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)

Query: 143 RNYSKDKTAKYIEKLKMVDFA-------ARKSEEEQMTRDEKKAR 180
           R    ++    I  L   DF        A+    +QM+++EK   
Sbjct: 83  RKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKI 127


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 27.2 bits (60), Expect = 3.2
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 23/140 (16%)

Query: 151 AKYIEKLKMVDFAARKSEEEQMTRDEKKARALNIPIPVNDIINLPMD---------EFNE 201
           A  +  +  +    R +      +    A    +      +     D         EF  
Sbjct: 355 AVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGV 414

Query: 202 RLSKYDLSETQLSLIRDIRRR-----GKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRH 256
           R   Y L+E Q   I D+R +        K+  +        ++L    E+ ++      
Sbjct: 415 RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE------YKELLDQIAELLRILGSADR 468

Query: 257 LMQEHEYLSQECSRVKSQFS 276
           LM   E + +E   V+ QF 
Sbjct: 469 LM---EVIREELELVREQFG 485


>d2icwg1 a.202.1.1 (G:1-213) Superantigen MAM {Mycoplasma
           arthritidis [TaxId: 2111]}
          Length = 213

 Score = 25.8 bits (56), Expect = 8.2
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 226 KVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQEC-SRVKSQFSQLYKHVFN 284
           K+  +N +K +   + +L + V   K+ +      ++  ++E     K + +Q Y+H F 
Sbjct: 2   KLRVENPKKAQKHFVQNLNNVVFTNKELEDIYNLSNKEETKEVLKLFKLKVNQFYRHAFG 61

Query: 285 ALRDSDG 291
            + D +G
Sbjct: 62  IVNDYNG 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.125    0.352 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,241,426
Number of extensions: 54318
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 19
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)