BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14686
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 197 bits (501), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 123/174 (70%), Gaps = 20/174 (11%)
Query: 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESK 96
+EPE +RKLFIGGLDYRT D++LKA FE+WG IVDVVVMKDP TKRSRGFGFITYS S
Sbjct: 24 ITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSS 83
Query: 97 MVDEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQM---DYFG 143
M+DEA +RPH+IDGRVVE KRAVPR+ VK V ++ ++ DYF
Sbjct: 84 MIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQ 143
Query: 144 QYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGE 197
+G I +N+V +KETG KRGFAF+EFDDYD VDK+VL K Q +NG+
Sbjct: 144 HFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQK-------QHQLNGK 190
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 56/82 (68%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+G L ++ S++ +F+ +G IVD+ ++ D T + RGF F+ + + VD+
Sbjct: 120 TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKV 179
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H+++G++V+ K+A+P++
Sbjct: 180 VLQKQHQLNGKMVDVKKALPKQ 201
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSES 95
+ +EPE LRKLFIGGLDYRT DD LKA FE+WG IVDVVVMKDP TKRSRGFGFITYS+S
Sbjct: 16 EITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQS 75
Query: 96 KMVDEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYF 142
M+D A + RPH+IDGR VE KRAVPR+ VK V ++ ++ +YF
Sbjct: 76 YMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYF 135
Query: 143 GQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKV 184
+G I SVN+V++K+TG KRGFAFIEFDDYD VDKI+L K
Sbjct: 136 KDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKT 177
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 20 TVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDP 79
TV P + + ++ +++KLF+GGL +++ L+ +F+ +G+IV V ++ D
Sbjct: 93 TVEPKRAVPRQEIDSPNAGA--TVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDK 150
Query: 80 VTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
T + RGF FI + + VD+ + + H I + ++ K+A+ ++
Sbjct: 151 DTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQ 194
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/163 (61%), Positives = 118/163 (72%), Gaps = 13/163 (7%)
Query: 34 DSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYS 93
++ EPE +RKLFIGGLDYRT D+SLK FEQWGEIVDVVVMKDP TKRSRGFGFITYS
Sbjct: 7 ENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66
Query: 94 ESKMVDEAMSNRPHEIDGRVVETKRAVPR----------EVKVRRVTKVQIALEQ---MD 140
+ MVD+A + RPH++DGRVVE KRAVPR VK V ++ +E+ D
Sbjct: 67 RAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRD 126
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
YF QYGT+ S +V +KET KRGFAF+EFDDYD VDKI L +
Sbjct: 127 YFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSR 169
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 30 KAMEDSQCSEPES---LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRG 86
+A+ ++ PE+ ++KLF+GG+ ++ L+ +F+Q+G +V ++ D T++ RG
Sbjct: 91 RAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRG 150
Query: 87 FGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPR 122
F F+ + + VD+ +R H+I G+ ++ K+A+P+
Sbjct: 151 FAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 112/164 (68%), Gaps = 13/164 (7%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FEQWG++ D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQ---MDYFGQY 145
D +MS RPH++DGRVVE KRAV RE R V ++ E+ DYF Y
Sbjct: 82 DASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGY 141
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEV 189
G IE++ ++ ++++G KRGFAF+ FDD+D VDKIV+ K + +
Sbjct: 142 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINL 185
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + L+ +FE +G+I + VM+D + + RGF F+T+ + VD+
Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+ E K+A+ ++
Sbjct: 176 VVQKYHTINLHNCEVKKALSKQ 197
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V ++ E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE + ++T++ +G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAV 120
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V ++ E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE + ++T++ +G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 112/164 (68%), Gaps = 14/164 (8%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
ED C E E LRKLFIGGL T +++LK F+ QWG++VDVVVM+D TKRSRGFGFITY
Sbjct: 22 EDDIC-ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITY 80
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQ-------M 139
++S MVD A NRPH IDG+ VE KRA+PR + R T + + L+
Sbjct: 81 TKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLR 140
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
+YF Q+G + SV ++T+K TG +RGFAF+EFDDYD VDK +L K
Sbjct: 141 EYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKK 184
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
S++KLF+GGL +++ L+ +F Q+G +V V ++ D T + RGF F+ + + VD+A
Sbjct: 121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA 180
Query: 102 MSNRPHEIDGRVVETKRAV 120
+ + H I V+ K+++
Sbjct: 181 ILKKQHAIKYVHVDVKKSI 199
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V ++ E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE + ++T++ +G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V ++ E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE + ++T++ +G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V ++ E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE + ++T++ +G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V ++ E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE + ++T++ +G KRGFAF+ FDD++ VDKIV+ K
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQK 166
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 109/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR-----VTKVQIA--------LEQMDYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE++ ++ ++++G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 54/82 (65%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E K+A+ ++
Sbjct: 184 VVQKYHTINGHNCEVKKALSKQ 205
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 109/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR-----VTKVQIA--------LEQMDYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE++ ++ ++++G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 54/82 (65%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E K+A+ ++
Sbjct: 184 VVQKYHTINGHNCEVKKALSKQ 205
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 109/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR-----VTKVQIA--------LEQMDYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE++ ++ ++++G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 54/82 (65%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E K+A+ ++
Sbjct: 184 VVQKYHTINGHNCEVKKALSKQ 205
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 109/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQM---DYFGQY 145
D AM+ PH++DGRVVE KRAV RE R V ++ E+ DYF QY
Sbjct: 69 DAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IE + ++T++ +G KRGFAF+ FDD+D VDKIV+ K
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H + G E ++A+P++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 110/162 (67%), Gaps = 13/162 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FEQWG++ D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----------VTKVQIALEQ---MDYFGQY 145
D +MS RPH++DGRVVE KRAV RE R V ++ E+ DY Y
Sbjct: 82 DASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESY 141
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVL 187
G IE++ ++ ++++G KRGFAF+ FDD+D VDKIV+ K +
Sbjct: 142 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 183
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + L+ + E +G+I + VM+D + + RGF F+T+ + VD+
Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E K+A+ ++
Sbjct: 176 VVQKYHTINGHNCEVKKALSKQ 197
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL ++T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE VK V ++ E+ DYF +Y
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G I+++ ++T++++G KRGF F+ FDD+D VDKIVL K
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 161
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +F ++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 158 VLQKYHTINGHNAEVRKALSRQ 179
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 109/159 (68%), Gaps = 13/159 (8%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
+EPE LRKLFIGGL + T D+SL+ FEQWG + D VVM+DP +KRSRGFGF+TY +
Sbjct: 8 NEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIALEQMD--------YFGQ 144
VD AM+ RPH++DGRVVE KRAV RE R V K+ + + D YF Q
Sbjct: 68 VDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQ 127
Query: 145 YGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
YG IE + ++T++ +G KRGFAF+ F+D+D VDKIV+ K
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQK 166
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE---SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVD 72
+V G VV +++ EDS S P +++K+F+GG+ T +D L+ +FEQ+G+I
Sbjct: 78 KVDGRVVEPKRAVSR--EDS--SRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEV 133
Query: 73 VVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ +M D + + RGF F+T+ + VD+ + + H ++ + ++A+ ++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQ 184
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 108/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ F+EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQY 145
D AMS RPH IDGRVVE KRAV RE VK V ++ E+ +YF +Y
Sbjct: 64 DAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G IES ++T+K++G KRGF F+ F+D+D VDKIVL K
Sbjct: 124 GKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQK 161
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 109/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG + D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE VK V ++ E+ +YF +Y
Sbjct: 64 DAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G I+S+ ++T+K++G KRGFAF+ FDD+D VDKIVL K
Sbjct: 124 GKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQK 161
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 113/173 (65%), Gaps = 20/173 (11%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE VK V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198
G I+++ ++T++++G KRGF F+ FDD+D VDKIVL K ING +
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK-------HHTINGHN 181
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKHHTINGHNAEVRKALSRQ 191
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 109/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE VK V ++ E+ DYF +Y
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G I+++ ++T++++G KRGF F+ FDD+D VDKIVL K
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 161
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 158 VLQKYHTINGHNAEVRKALSRQ 179
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 109/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE VK V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G I+++ ++T++++G KRGF F+ FDD+D VDKIVL K
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQ 191
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 109/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE VK V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G I+++ ++T++++G KRGF F+ FDD+D VDKIVL K
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQ 191
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 108/158 (68%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE VK V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
G I+++ ++T++++G KRGF F+ FDD+D VDKI L K
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQK 173
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ H I+G E ++A+ R+
Sbjct: 170 FLQKYHTINGHNAEVRKALSRQ 191
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 13/158 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE+LRK+F+GGL T DD ++ F+ Q+GEI D++VM+DP TKRSRGFGF+T+S V
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIA-----------LEQM--DYFGQY 145
D AM RPH IDG+ V+ KRAVPR+ K R + V E M +YF +Y
Sbjct: 78 DAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKY 137
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
GT+ ++ +K T RGF F+ FDD+D VD+ VL K
Sbjct: 138 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 175
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 10 KLVPGLEVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWG 68
K P + TV P + +D SE S ++L++ G+ +D L +F ++G
Sbjct: 82 KQRPHIIDGKTVDPKRAV---PRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYG 138
Query: 69 EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ ++ D T++ RGFGF+T+ + VD+ + + H ++G + ++ + ++
Sbjct: 139 TVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKD 193
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 98/165 (59%), Gaps = 19/165 (11%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME+SQ L KLFIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+T
Sbjct: 1 MENSQ------LCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVT 54
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIALEQMD------ 140
YS + D AM+ PH +DG VE KRAV RE R +V K+ + + D
Sbjct: 55 YSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDL 114
Query: 141 --YFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
+F Q+GT+E ++ +K++G KRGF F+ F ++D DK + K
Sbjct: 115 IEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVK 159
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 72 VDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEI 129
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E
Sbjct: 130 IADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 14/162 (8%)
Query: 32 MEDSQCSE---PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFG 88
+E CS P K+FIGGL ++T+ +SL+ +F ++G+I + +VMKDP T+RSRGFG
Sbjct: 14 VELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFG 73
Query: 89 FITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQ----------IALEQ 138
F+T+S+ VD+ ++ HE+DG+ V+ K A PR + VT+ + LE
Sbjct: 74 FVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLED 133
Query: 139 M-DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKI 179
+ YF Q+G IE ++ +K+T RGF F+ F DVVDK+
Sbjct: 134 VKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV 175
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K++FEQ+G I D ++M D T R RGFGF+T+ +VD+
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 178 IHFHEINNKMVECKKAQPKEV 198
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 133 QIALEQM-DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
Q + E + DYFG+YG I ++ + T RGF F+ F D + VDK++
Sbjct: 39 QTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVL 87
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 96/165 (58%), Gaps = 19/165 (11%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME+SQ L KLFIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+T
Sbjct: 1 MENSQ------LCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVT 54
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIALEQMD------ 140
YS + D AM+ PH +DG VE KRAV RE R +V K+ + + D
Sbjct: 55 YSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDL 114
Query: 141 --YFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
+F Q+G +E ++ +K++G KRGF F+ F +D DK + K
Sbjct: 115 IEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVK 159
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 72 VDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEI 129
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E
Sbjct: 130 IADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 95/151 (62%), Gaps = 10/151 (6%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL++ T DDSL+ +FEQ+GE++D VM+D T RSRGFGF+T+ K V+E MS
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS- 222
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIA--------LEQMDYFGQYGTIESVNMVTN 156
+ H +DG++++ KRA+PRE + + K+ + E ++F Q+G + ++ +
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQ-EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMD 281
Query: 157 KETGAKRGFAFIEFDDYDVVDKIVLDKVVVL 187
K+TG RGF F+ +++ V+ + + +
Sbjct: 282 KDTGRPRGFGFVTYENESAVEATMSQPYITI 312
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E K+F+GG+ ++ + FF Q+G ++D +M D T R RGFGF+TY V
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 99 DEAMSNRPHEIDGRVVETKRAVPR 122
+ MS I G+ VE KRA P+
Sbjct: 302 EATMSQPYITIHGKPVEVKRATPK 325
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 100/161 (62%), Gaps = 13/161 (8%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD+ +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQ-----------IALEQMDYFGQYGTIESVNM 153
HE+D + ++ K A PR + + VT+ + + + YF Q+G +E +
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141
Query: 154 VTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI 194
+ +K T RGF F+ F++ DVV+K+ ++ E++ +++
Sbjct: 142 MFDKTTNRHRGFGFVTFENEDVVEKVC--EIHFHEINNKMV 180
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 104 NRPHEIDGRVVETKRAVPREVKVRRVTK 131
HEI+ ++VE K+A P+EV T+
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPPGTR 197
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 92/146 (63%), Gaps = 11/146 (7%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD+ +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQ-----------IALEQMDYFGQYGTIESVNM 153
HE+D + ++ K A PR + + VT+ + + + YF Q+G +E +
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141
Query: 154 VTNKETGAKRGFAFIEFDDYDVVDKI 179
+ +K T RGF F+ F++ DVV+K+
Sbjct: 142 MFDKTTNRHRGFGFVTFENEDVVEKV 167
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 104 NRPHEIDGRVVETKRAVPREVKVRRVTK 131
HEI+ ++VE K+A P+EV T+
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPPGTR 197
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
DYF ++G I ++ + T RGF F+ F D VDK++
Sbjct: 39 DYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 96/149 (64%), Gaps = 10/149 (6%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL++ T +D+L+ +F ++G + D+ +MKDP T RSRGFGF+++ + VDE +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIA--------LEQMDYFGQYGTIESVNMVTN 156
+ H +DG+V++ KRA+PR+ + + K+ + E ++F Q+GTI ++ +
Sbjct: 220 Q-HILDGKVIDPKRAIPRDEQ-DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLD 277
Query: 157 KETGAKRGFAFIEFDDYDVVDKIVLDKVV 185
K+TG RGF F+ +D D VD++ +K +
Sbjct: 278 KDTGQSRGFGFVTYDSADAVDRVCQNKFI 306
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GG+ + FF QWG I+D +M D T +SRGFGF+TY + VD N
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 105 RPHEIDGRVVETKRAVPREVKVR 127
+ + R +E KRA PR ++ +
Sbjct: 304 KFIDFKDRKIEIKRAEPRHMQQK 326
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 92/151 (60%), Gaps = 11/151 (7%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQM-DYFGQYGTI 148
+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+G +
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135
Query: 149 ESVNMVTNKETGAKRGFAFIEFDDYDVVDKI 179
+ ++ +K T RGF F+ F+ D+V+K+
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 166
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREVKVRRVT---KVQIALEQMDYFG------QYGTIESVNMV 154
HEI+ ++VE K+A P+EV + + ++ MD F Y ++
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYA 228
Query: 155 TNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLE 188
+ TG G+ + +F ++ V++ L VL
Sbjct: 229 SRSYTGLAPGYTY-QFPEFR-VERTPLPSAPVLP 260
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN 195
+YFGQ+G ++ ++ + T RGF F+ F D VDK++ E+D + I+
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--RHELDSKTID 91
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 92/151 (60%), Gaps = 11/151 (7%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQMD-YFGQYGTI 148
+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+G +
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 149 ESVNMVTNKETGAKRGFAFIEFDDYDVVDKI 179
+ ++ +K T RGF F+ F+ D+V+K+
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 166
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREVKVRRVT---KVQIALEQMDYFG------QYGTIESVNMV 154
HEI+ ++VE K+A P+EV + + ++ MD F Y ++
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYA 228
Query: 155 TNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLE 188
+ TG G+ + +F ++ V++ L VL
Sbjct: 229 SRSYTGLAPGYTY-QFPEFR-VERTPLPSAPVLP 260
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN 195
+YFGQ+G ++ ++ + T RGF F+ F D VDK++ E+D + I+
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--RHELDSKTID 91
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 92/151 (60%), Gaps = 11/151 (7%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQMD-YFGQYGTI 148
+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+G +
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 149 ESVNMVTNKETGAKRGFAFIEFDDYDVVDKI 179
+ ++ +K T RGF F+ F+ D+V+K+
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 166
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREVKVRRVT---KVQIALEQMDYFG------QYGTIESVNMV 154
HEI+ ++VE K+A P+EV + + ++ MD F Y ++
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYA 228
Query: 155 TNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEV 189
+ TG G+ + +F ++ V + V+ E+
Sbjct: 229 SRSYTGLAPGYTY-QFPEFRVERSPLPSAPVLPEL 262
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN 195
+YFGQ+G ++ ++ + T RGF F+ F D VDK++ E+D + I+
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--RHELDSKTID 91
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 28/163 (17%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V +++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMD------------------------ 140
RPH +DGR ++ K PR ++ R ++ + +Q +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPER-SRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129
Query: 141 ---YFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
YF ++G + V M+ + E RGF FI F+D VD+ V
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 29 NKAMEDSQCSEP--ESLR--KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRS 84
++ E Q EP E+ R K+F+GG+ + + LK +F ++G + +VV++ D +R
Sbjct: 95 SRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRP 154
Query: 85 RGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR 127
RGFGFIT+ + + VD+A++ H+I G+ VE KRA PR+ K +
Sbjct: 155 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQ 197
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLE 188
YF QYG + ++ +K T RGF F++F D + V ++ + L+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLD 76
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 25/165 (15%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRV-----------------TKVQIA-------- 135
+++RPH +DGR ++ K PR ++ R K+ +
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGE 126
Query: 136 LEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
E +YF ++G + V M+ + E RGF FI F+D VD+ V
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 56/81 (69%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + + VD+A++
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 105 RPHEIDGRVVETKRAVPREVK 125
H+I G+ VE KRA PR+ K
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSK 194
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLE 188
YF QYG + ++ +K T RGF F++F D + V ++ + L+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLD 76
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 25/165 (15%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRV-----------------TKVQIA-------- 135
+++RPH +DGR ++ K PR ++ R K+ +
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 136 LEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
E +YF ++G + V M+ + E RGF FI F+D VD+ V
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 57/83 (68%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + + VD+A++
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 105 RPHEIDGRVVETKRAVPREVKVR 127
H+I G+ VE KRA PR+ K +
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSKSQ 196
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLE 188
YF QYG + ++ +K T RGF F++F D + V ++ + L+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLD 76
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 9/147 (6%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMD--------YFGQYGTIESVNMVTN 156
+ H+++G+V++ KRA + K V K+ + D YFG +G +ES+ + +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Query: 157 KETGAKRGFAFIEFDDYDVVDKIVLDK 183
+T +RGF FI F + + V KI+ K
Sbjct: 217 NKTNKRRGFCFITFKEEEPVKKIMEKK 243
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 9/147 (6%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMD--------YFGQYGTIESVNMVTN 156
+ H+++G+V++ KRA + K V K+ + D YFG +G +ES+ + +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Query: 157 KETGAKRGFAFIEFDDYDVVDKIVLDK 183
+T +RGF FI F + + V KI+ K
Sbjct: 217 NKTNKRRGFCFITFKEEEPVKKIMEKK 243
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 10/151 (6%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + +S V++
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQ--MDYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFGQ+G IE++
Sbjct: 132 VLDQKEHRLDGRVIDPKKAM--AMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189
Query: 153 MVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
+ + + +RGF FI F + D V K++ K
Sbjct: 190 LPIDPKLNKRRGFVFITFKEEDPVKKVLEKK 220
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F Q+GEI + + DP + RGF FIT+ E V +
Sbjct: 156 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 216 VLEKKFHTVSGSKCEIKVAQPKEV 239
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 88/147 (59%), Gaps = 9/147 (6%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++G++VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMD--------YFGQYGTIESVNMVTN 156
+ H+++G+V++ KRA + K V K+ + D YFG +G +ES+ + +
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 214
Query: 157 KETGAKRGFAFIEFDDYDVVDKIVLDK 183
+T +RGF FI F + + V KI+ K
Sbjct: 215 NKTNKRRGFCFITFKEEEPVKKIMEKK 241
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 237 IMEKKYHNVGLSKCEIKVAMSKE 259
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 89/148 (60%), Gaps = 7/148 (4%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P S K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ VD
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 100 EAMSNRPHEIDGRVVETKRA-------VPREVKVRRVTKVQIALEQMDYFGQYGTIESVN 152
+ + + H++DG++++ KRA P++V V ++ + +YFG +G IE++
Sbjct: 107 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 166
Query: 153 MVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+ + +T +RGF FI + D + V K++
Sbjct: 167 LPMDTKTNERRGFCFITYTDEEPVKKLL 194
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 133 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 193 LLESRYHQIGSGKCEIKVAQPKEV 216
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 87/143 (60%), Gaps = 7/143 (4%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ VD+ +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 105 RPHEIDGRVVETKRA-------VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNK 157
+ H++DG++++ KRA P++V V ++ + +YFG +G IE++ + +
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDT 268
Query: 158 ETGAKRGFAFIEFDDYDVVDKIV 180
+T +RGF FI + D + V K++
Sbjct: 269 KTNERRGFCFITYTDEEPVKKLL 291
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 230 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 290 LLESRYHQIGSGKCEIKVAQPKEV 313
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 87/143 (60%), Gaps = 7/143 (4%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ VD+ +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 105 RPHEIDGRVVETKRA-------VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNK 157
+ H++DG++++ KRA P++V V ++ + +YFG +G IE++ + +
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDT 149
Query: 158 ETGAKRGFAFIEFDDYDVVDKIV 180
+T +RGF FI + D + V K++
Sbjct: 150 KTNERRGFCFITYTDEEPVKKLL 172
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 111 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 170
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 171 LLESRYHQIGSGKCEIKVAQPKEV 194
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 86/143 (60%), Gaps = 7/143 (4%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE++D + DPVT RSRGFGF+ + ++ VD+ +
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 105 RPHEIDGRVVETKRA-------VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNK 157
+ H++DG++++ KRA P++V V ++ + YFG +G IE++ + +
Sbjct: 95 KEHKLDGKLIDPKRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDT 154
Query: 158 ETGAKRGFAFIEFDDYDVVDKIV 180
+T +RGF F+ + D + V K++
Sbjct: 155 KTNERRGFCFVTYTDEEPVQKLL 177
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 26 MIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSR 85
+I K + Q EP +K+F+GGL T ++ +K +F +GEI ++ + D T R
Sbjct: 103 LIDPKRAKALQGKEPP--KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERR 160
Query: 86 GFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREV 124
GF F+TY++ + V + + +R H+I E K A P+EV
Sbjct: 161 GFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKEV 199
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 11/158 (6%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLF+GGL + T ++L +F ++G+I+D VVMK+ + RSRGFGF+T+++ V+ + N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 105 RPHEIDGRVVETKRAVPREV-KVRRVTKVQIALEQMD----------YFGQYGTIESVNM 153
PH +DGR ++ K PR + K ++ ++ L + +F +YG + V +
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127
Query: 154 VTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQ 191
+ ++E RGF F+ F++ V+ + ++ + L Q
Sbjct: 128 MYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQ 165
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GGL + L+ FF ++G++ +VV+M D K+SRGFGF+++ E V+ +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 105 RPHEIDGRVVETKRAVPRE 123
R ++G+ VE K+A PR+
Sbjct: 157 RYINLNGKQVEIKKAEPRD 175
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 7/150 (4%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + ++ V++
Sbjct: 66 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 125
Query: 101 AMSNRPHEIDGRVVETKRAVP-REVKVRRVTKVQIALEQ------MDYFGQYGTIESVNM 153
+ + H +DGRV++ K+A+ ++ V+++ + E +YFG++G IE++ +
Sbjct: 126 VLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIEL 185
Query: 154 VTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183
+ + +RGF FI F + + V K++ K
Sbjct: 186 PMDPKLNKRRGFVFITFKEEEPVKKVLEKK 215
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 41 ESLRKLFIGGLDYRT-NDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
+ ++K+F+GGL+ + ++ ++ +F ++GEI + + DP + RGF FIT+ E + V
Sbjct: 150 DPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Query: 100 EAMSNRPHEIDGRVVETKRAVPREV 124
+ + + H + G E K A P+EV
Sbjct: 210 KVLEKKFHTVSGSKCEIKVAQPKEV 234
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 87/143 (60%), Gaps = 7/143 (4%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ V++ +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 105 RPHEIDGRVVETKRA-------VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNK 157
+ H++DG++++ KRA P++V V ++ + +YFG +G IE++ + +
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDT 150
Query: 158 ETGAKRGFAFIEFDDYDVVDKIV 180
+T +RGF FI + D + V K++
Sbjct: 151 KTNERRGFCFITYTDEEPVKKLL 173
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 112 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 172 LLESRYHQIGSGKCEIKVAQPKEV 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,650,403
Number of Sequences: 539616
Number of extensions: 4354845
Number of successful extensions: 14382
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 12467
Number of HSP's gapped (non-prelim): 1671
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)