Query psy14686
Match_columns 306
No_of_seqs 249 out of 2278
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 18:05:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2E-35 6.7E-40 248.8 20.1 167 37-210 7-186 (196)
2 4f02_A Polyadenylate-binding p 100.0 4.6E-35 1.6E-39 250.7 18.3 159 41-207 13-181 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 4.1E-34 1.4E-38 234.0 18.1 155 44-205 1-165 (166)
4 2cjk_A Nuclear polyadenylated 100.0 1.2E-34 4E-39 237.9 14.0 157 42-206 2-165 (167)
5 1fxl_A Paraneoplastic encephal 100.0 8.9E-34 3E-38 232.2 19.2 154 43-202 2-163 (167)
6 1b7f_A Protein (SXL-lethal pro 100.0 5.5E-34 1.9E-38 234.0 17.6 156 42-203 2-167 (168)
7 3smz_A Protein raver-1, ribonu 100.0 2.8E-33 9.5E-38 249.5 21.1 187 3-209 68-266 (284)
8 2qfj_A FBP-interacting repress 100.0 2.2E-33 7.4E-38 239.8 19.2 163 41-209 26-207 (216)
9 2ghp_A U4/U6 snRNA-associated 100.0 9.5E-34 3.2E-38 253.5 15.1 206 36-250 34-246 (292)
10 3nmr_A Cugbp ELAV-like family 100.0 2.1E-32 7.1E-37 225.9 18.0 156 42-204 2-174 (175)
11 3smz_A Protein raver-1, ribonu 100.0 2.5E-32 8.5E-37 243.4 19.7 197 41-250 20-220 (284)
12 2ghp_A U4/U6 snRNA-associated 100.0 6.1E-32 2.1E-36 241.8 17.4 182 3-207 92-291 (292)
13 2g4b_A Splicing factor U2AF 65 100.0 6.2E-32 2.1E-36 222.7 15.9 151 42-204 3-171 (172)
14 2yh0_A Splicing factor U2AF 65 100.0 4E-31 1.4E-35 222.7 16.0 155 42-208 3-195 (198)
15 1fje_B Nucleolin RBD12, protei 100.0 3.6E-32 1.2E-36 224.9 8.3 157 38-206 8-173 (175)
16 3sde_A Paraspeckle component 1 100.0 1E-29 3.5E-34 224.1 18.0 158 38-208 17-180 (261)
17 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-29 4.6E-34 225.4 18.4 153 39-205 5-281 (282)
18 3tyt_A Heterogeneous nuclear r 100.0 7E-30 2.4E-34 217.2 14.7 144 42-198 3-194 (205)
19 2adc_A Polypyrimidine tract-bi 100.0 4.8E-29 1.6E-33 215.6 14.3 151 40-206 31-227 (229)
20 1qm9_A Polypyrimidine tract-bi 100.0 4.6E-29 1.6E-33 210.5 11.0 148 43-206 3-196 (198)
21 4fxv_A ELAV-like protein 1; RN 99.9 9.6E-22 3.3E-26 147.4 10.9 81 41-121 17-98 (99)
22 4f25_A Polyadenylate-binding p 99.9 6.2E-22 2.1E-26 152.6 10.0 95 41-137 3-113 (115)
23 2kn4_A Immunoglobulin G-bindin 99.9 8.7E-22 3E-26 160.2 10.4 129 72-208 2-151 (158)
24 3s8s_A Histone-lysine N-methyl 99.8 1.9E-20 6.4E-25 143.1 11.3 83 40-122 3-86 (110)
25 2lxi_A RNA-binding protein 10; 99.8 2.3E-21 7.9E-26 143.1 5.3 81 43-123 1-84 (91)
26 3s7r_A Heterogeneous nuclear r 99.8 3.1E-20 1.1E-24 135.6 11.1 82 38-119 6-87 (87)
27 2lkz_A RNA-binding protein 5; 99.8 1.1E-20 3.8E-25 140.4 7.4 83 39-121 5-94 (95)
28 3md3_A Nuclear and cytoplasmic 99.8 1.3E-19 4.3E-24 147.5 13.6 114 3-121 52-166 (166)
29 2dgs_A DAZ-associated protein 99.8 9.3E-20 3.2E-24 136.4 11.3 86 38-123 5-90 (99)
30 2jrs_A RNA-binding protein 39; 99.8 9.4E-20 3.2E-24 138.8 11.5 88 36-123 19-107 (108)
31 3lqv_A PRE-mRNA branch site pr 99.8 3.9E-20 1.3E-24 142.3 9.4 104 40-147 5-109 (115)
32 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-19 3.9E-24 132.4 10.5 81 42-122 5-86 (87)
33 1s79_A Lupus LA protein; RRM, 99.8 6.2E-20 2.1E-24 138.5 9.1 81 40-121 8-88 (103)
34 2cq0_A Eukaryotic translation 99.8 1.6E-19 5.4E-24 136.1 11.1 87 37-123 9-96 (103)
35 3md1_A Nuclear and cytoplasmic 99.8 1.7E-19 5.9E-24 130.3 10.7 79 44-122 2-81 (83)
36 2cqc_A Arginine/serine-rich sp 99.8 1.8E-19 6.1E-24 133.6 10.9 85 37-121 9-94 (95)
37 1x5u_A Splicing factor 3B subu 99.8 1.6E-19 5.5E-24 136.5 10.7 88 36-123 8-96 (105)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.8E-24 131.4 9.8 81 40-120 4-85 (85)
39 2g4b_A Splicing factor U2AF 65 99.8 2.9E-19 9.9E-24 146.5 12.8 109 3-119 62-171 (172)
40 1l3k_A Heterogeneous nuclear r 99.8 3.4E-19 1.2E-23 149.2 13.4 119 3-123 66-184 (196)
41 2rs2_A Musashi-1, RNA-binding 99.8 1E-19 3.5E-24 138.8 9.3 87 37-123 19-105 (109)
42 2cpz_A CUG triplet repeat RNA- 99.8 2E-19 6.9E-24 138.3 11.0 87 37-123 19-106 (115)
43 2dgo_A Cytotoxic granule-assoc 99.8 3.4E-19 1.2E-23 137.1 12.1 88 36-123 8-96 (115)
44 1whw_A Hypothetical protein ri 99.8 2E-19 6.9E-24 134.5 10.5 86 39-124 4-90 (99)
45 1p27_B RNA-binding protein 8A; 99.8 2.4E-19 8.4E-24 135.8 11.1 85 38-122 18-103 (106)
46 2dnz_A Probable RNA-binding pr 99.8 2.5E-19 8.4E-24 132.9 10.8 83 41-123 3-86 (95)
47 2la6_A RNA-binding protein FUS 99.8 2.9E-19 1E-23 133.7 11.3 84 37-120 7-99 (99)
48 2dnm_A SRP46 splicing factor; 99.8 1.5E-19 5.1E-24 136.3 9.6 86 37-122 7-93 (103)
49 2do4_A Squamous cell carcinoma 99.8 4.4E-19 1.5E-23 132.9 12.0 85 38-123 12-97 (100)
50 2dng_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 133.9 11.8 85 38-123 10-94 (103)
51 3ns6_A Eukaryotic translation 99.8 3.6E-20 1.2E-24 139.1 5.9 82 42-123 5-94 (100)
52 1x4h_A RNA-binding protein 28; 99.8 2.7E-19 9.3E-24 136.6 10.9 87 37-123 9-102 (111)
53 2yh0_A Splicing factor U2AF 65 99.8 5.1E-19 1.7E-23 148.4 13.4 120 3-123 62-195 (198)
54 2dh8_A DAZ-associated protein 99.8 1.7E-19 5.8E-24 136.5 9.1 87 37-123 10-96 (105)
55 2x1f_A MRNA 3'-END-processing 99.8 2.7E-19 9.3E-24 133.1 10.0 82 43-124 2-84 (96)
56 3p5t_L Cleavage and polyadenyl 99.8 6.2E-20 2.1E-24 135.0 6.3 79 44-122 2-83 (90)
57 2e5h_A Zinc finger CCHC-type a 99.8 3E-19 1E-23 132.2 10.1 83 38-120 11-94 (94)
58 3ucg_A Polyadenylate-binding p 99.8 4.4E-19 1.5E-23 129.9 10.8 80 43-122 6-85 (89)
59 2i2y_A Fusion protein consists 99.8 1.1E-19 3.7E-24 146.5 8.2 115 3-123 24-149 (150)
60 2cqg_A TDP-43, TAR DNA-binding 99.8 7.7E-19 2.6E-23 132.3 12.1 86 37-123 9-94 (103)
61 1b7f_A Protein (SXL-lethal pro 99.8 9.8E-19 3.3E-23 142.7 13.5 110 3-119 56-168 (168)
62 2dnh_A Bruno-like 5, RNA bindi 99.8 8.1E-19 2.8E-23 132.6 12.0 85 38-123 10-98 (105)
63 1x5s_A Cold-inducible RNA-bind 99.8 3.4E-19 1.2E-23 134.0 9.8 86 38-123 7-93 (102)
64 2kxn_B Transformer-2 protein h 99.8 3.3E-19 1.1E-23 140.1 9.9 88 36-123 39-127 (129)
65 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.1E-19 7.2E-24 135.2 8.3 87 38-124 7-94 (102)
66 1x5t_A Splicing factor 3B subu 99.8 2.5E-19 8.6E-24 133.2 8.6 83 41-123 3-87 (96)
67 2div_A TRNA selenocysteine ass 99.8 4E-19 1.4E-23 132.9 9.7 84 39-122 5-94 (99)
68 2mss_A Protein (musashi1); RNA 99.8 1.5E-19 5E-24 128.2 6.9 75 45-119 1-75 (75)
69 1wg5_A Heterogeneous nuclear r 99.8 5.3E-19 1.8E-23 133.6 10.4 85 38-123 10-95 (104)
70 1oo0_B CG8781-PA, drosophila Y 99.8 4.3E-19 1.5E-23 135.4 9.9 85 38-122 21-106 (110)
71 2khc_A Testis-specific RNP-typ 99.8 4.4E-19 1.5E-23 137.0 10.1 85 36-120 33-118 (118)
72 2dgp_A Bruno-like 4, RNA bindi 99.8 3.4E-19 1.2E-23 134.9 9.3 86 38-123 8-97 (106)
73 2d9p_A Polyadenylate-binding p 99.8 9.1E-19 3.1E-23 131.9 11.5 86 37-124 9-95 (103)
74 1wez_A HnRNP H', FTP-3, hetero 99.8 4.1E-19 1.4E-23 133.8 9.5 83 38-122 10-92 (102)
75 2kn4_A Immunoglobulin G-bindin 99.8 4.7E-19 1.6E-23 143.9 10.5 84 39-122 66-150 (158)
76 2cph_A RNA binding motif prote 99.8 7E-19 2.4E-23 133.4 10.8 87 37-123 9-98 (107)
77 2ywk_A Putative RNA-binding pr 99.8 6.6E-19 2.3E-23 130.6 10.4 82 38-120 11-93 (95)
78 2lea_A Serine/arginine-rich sp 99.8 1.3E-19 4.4E-24 143.6 6.9 110 5-122 17-127 (135)
79 2jwn_A Embryonic polyadenylate 99.8 5.3E-20 1.8E-24 143.5 4.6 111 8-122 5-115 (124)
80 1wi8_A EIF-4B, eukaryotic tran 99.8 5.5E-19 1.9E-23 133.4 9.9 85 38-123 10-95 (104)
81 2cpy_A RNA-binding protein 12; 99.8 2.2E-19 7.7E-24 138.0 7.7 84 38-122 10-94 (114)
82 2cq4_A RNA binding motif prote 99.8 2E-19 7E-24 138.1 7.3 83 40-122 22-104 (114)
83 2cpf_A RNA binding motif prote 99.8 5.6E-19 1.9E-23 131.8 9.5 83 41-123 3-89 (98)
84 1p1t_A Cleavage stimulation fa 99.8 1.7E-19 5.7E-24 136.2 6.6 83 40-122 5-88 (104)
85 1fxl_A Paraneoplastic encephal 99.8 1.4E-18 4.9E-23 141.4 12.7 110 3-119 55-167 (167)
86 2qfj_A FBP-interacting repress 99.8 4.8E-19 1.6E-23 150.6 10.1 120 3-122 81-205 (216)
87 1x4b_A Heterogeneous nuclear r 99.8 2.3E-19 7.9E-24 138.2 7.3 85 40-124 24-108 (116)
88 2dhg_A TRNA selenocysteine ass 99.8 8.7E-19 3E-23 132.2 10.2 85 38-123 4-91 (104)
89 2cqd_A RNA-binding region cont 99.8 1.3E-18 4.3E-23 134.1 11.3 85 37-122 11-96 (116)
90 3n9u_C Cleavage and polyadenyl 99.8 6.6E-19 2.3E-23 142.8 9.8 81 42-122 54-137 (156)
91 1iqt_A AUF1, heterogeneous nuc 99.8 1.9E-19 6.6E-24 127.5 5.5 75 45-119 1-75 (75)
92 2cpe_A RNA-binding protein EWS 99.8 8.1E-19 2.8E-23 134.5 9.5 86 38-123 10-104 (113)
93 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-18 5.3E-23 137.9 11.3 86 38-123 37-123 (139)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.9E-19 9.8E-24 134.1 6.6 85 37-122 13-98 (100)
95 2i2y_A Fusion protein consists 99.8 3E-19 1E-23 144.0 7.0 114 82-207 10-148 (150)
96 2dgw_A Probable RNA-binding pr 99.8 1.8E-18 6.3E-23 127.2 10.6 83 38-122 5-87 (91)
97 2fy1_A RNA-binding motif prote 99.8 1.1E-18 3.9E-23 134.4 9.8 83 40-123 4-87 (116)
98 2cqp_A RNA-binding protein 12; 99.8 6.7E-19 2.3E-23 131.4 8.1 85 38-122 10-95 (98)
99 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.9E-19 1.3E-23 126.6 6.5 76 44-119 1-76 (77)
100 1x4e_A RNA binding motif, sing 99.8 2.5E-19 8.6E-24 130.1 5.6 80 41-120 3-83 (85)
101 1sjq_A Polypyrimidine tract-bi 99.8 9.1E-19 3.1E-23 131.7 8.6 81 39-125 12-95 (105)
102 2kt5_A RNA and export factor-b 99.8 2.8E-18 9.7E-23 133.7 11.7 87 38-125 30-117 (124)
103 4a8x_A RNA-binding protein wit 99.8 1E-18 3.5E-23 127.6 8.6 81 42-122 3-85 (88)
104 3ulh_A THO complex subunit 4; 99.8 2.6E-18 8.8E-23 130.3 11.0 82 38-120 24-106 (107)
105 2m2b_A RNA-binding protein 10; 99.8 3.2E-19 1.1E-23 140.6 6.1 87 36-123 16-109 (131)
106 2dgv_A HnRNP M, heterogeneous 99.8 2.4E-18 8.3E-23 126.8 10.5 83 39-123 4-87 (92)
107 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4E-18 1.4E-22 135.4 12.2 83 37-119 57-140 (140)
108 3ex7_B RNA-binding protein 8A; 99.8 1.5E-18 5.1E-23 135.6 9.5 86 37-122 16-102 (126)
109 2cq3_A RNA-binding protein 9; 99.8 4.6E-18 1.6E-22 128.0 11.9 85 37-123 9-94 (103)
110 2hgm_A HNRPF protein, heteroge 99.8 8.2E-19 2.8E-23 136.8 7.9 84 38-123 37-122 (126)
111 2hgl_A HNRPF protein, heteroge 99.8 7.8E-19 2.7E-23 138.9 7.8 84 38-122 39-125 (136)
112 2db1_A Heterogeneous nuclear r 99.8 9.9E-19 3.4E-23 135.2 8.2 83 39-122 13-98 (118)
113 2cjk_A Nuclear polyadenylated 99.8 8.7E-19 3E-23 143.0 8.3 111 3-122 56-166 (167)
114 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.9E-18 1.3E-22 128.4 11.2 85 37-123 9-94 (103)
115 2nlw_A Eukaryotic translation 99.8 1.9E-18 6.6E-23 130.7 9.5 84 38-123 10-101 (105)
116 2xs2_A Deleted in azoospermia- 99.8 1E-18 3.4E-23 131.5 7.7 81 40-122 6-86 (102)
117 2err_A Ataxin-2-binding protei 99.8 1.6E-18 5.4E-23 132.1 8.8 86 36-123 22-108 (109)
118 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.1E-18 1.4E-22 138.2 11.7 85 38-122 34-119 (156)
119 1wel_A RNA-binding protein 12; 99.8 7.1E-19 2.4E-23 137.2 6.9 85 38-122 20-104 (124)
120 3r27_A HnRNP L, heterogeneous 99.8 2.8E-18 9.6E-23 127.8 9.8 82 37-124 15-99 (100)
121 2ek1_A RNA-binding protein 12; 99.8 7.9E-19 2.7E-23 130.2 6.8 81 40-120 12-93 (95)
122 4fxv_A ELAV-like protein 1; RN 99.8 2.2E-18 7.6E-23 129.0 9.1 79 121-205 19-97 (99)
123 2dnn_A RNA-binding protein 12; 99.8 1.2E-18 4.2E-23 132.6 7.5 81 40-122 13-93 (109)
124 2do0_A HnRNP M, heterogeneous 99.8 6.8E-18 2.3E-22 129.4 11.8 83 38-121 10-93 (114)
125 2wbr_A GW182, gawky, LD47780P; 99.8 4.3E-18 1.5E-22 122.7 9.8 72 42-119 6-78 (89)
126 2dis_A Unnamed protein product 99.8 3.5E-18 1.2E-22 130.0 9.7 83 41-123 6-93 (109)
127 2cq1_A PTB-like protein L; RRM 99.8 5.5E-18 1.9E-22 127.2 10.6 82 38-125 10-94 (101)
128 2ki2_A SS-DNA binding protein 99.8 5.7E-19 1.9E-23 129.7 4.9 79 44-123 2-81 (90)
129 2dgx_A KIAA0430 protein; RRM d 99.7 3.8E-18 1.3E-22 126.9 9.4 81 40-123 6-91 (96)
130 1x5o_A RNA binding motif, sing 99.7 9.5E-18 3.2E-22 128.7 11.7 84 38-122 20-112 (114)
131 2lmi_A GRSF-1, G-rich sequence 99.7 8.3E-19 2.8E-23 133.2 5.7 84 38-122 6-92 (107)
132 4f02_A Polyadenylate-binding p 99.7 1.9E-18 6.6E-23 147.2 8.2 124 122-251 16-139 (213)
133 3nmr_A Cugbp ELAV-like family 99.7 1.3E-17 4.5E-22 136.8 12.6 110 3-119 58-174 (175)
134 1fje_B Nucleolin RBD12, protei 99.7 5.3E-18 1.8E-22 139.5 10.1 109 3-122 65-174 (175)
135 2krb_A Eukaryotic translation 99.7 2.9E-18 9.8E-23 123.5 7.2 72 43-116 1-80 (81)
136 2cpi_A CCR4-NOT transcription 99.7 5.4E-18 1.9E-22 129.6 9.2 85 39-123 11-102 (111)
137 2dha_A FLJ20171 protein; RRM d 99.7 2E-18 6.8E-23 134.2 6.7 81 41-122 21-105 (123)
138 1x4a_A Splicing factor, argini 99.7 1.1E-17 3.9E-22 127.2 10.8 84 37-123 16-100 (109)
139 2ad9_A Polypyrimidine tract-bi 99.7 5.5E-18 1.9E-22 130.5 8.9 84 37-126 25-111 (119)
140 2a3j_A U1 small nuclear ribonu 99.7 9.4E-18 3.2E-22 131.2 9.9 83 39-124 25-112 (127)
141 1wex_A Hypothetical protein (r 99.7 1.7E-17 5.7E-22 125.2 11.0 83 37-125 9-94 (104)
142 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.5E-17 5.2E-22 136.1 11.2 85 38-122 67-152 (165)
143 3s8s_A Histone-lysine N-methyl 99.7 8.1E-18 2.8E-22 128.4 8.6 83 120-208 5-87 (110)
144 1x4d_A Matrin 3; structural ge 99.7 1.3E-17 4.5E-22 125.1 9.2 79 38-122 10-92 (102)
145 2hvz_A Splicing factor, argini 99.7 6.1E-18 2.1E-22 126.9 7.2 73 44-121 1-74 (101)
146 2fc8_A NCL protein; structure 99.7 2.7E-17 9.2E-22 123.5 10.7 84 37-123 9-93 (102)
147 1fj7_A Nucleolin RBD1, protein 99.7 1E-18 3.5E-23 131.2 2.8 84 39-123 13-96 (101)
148 2voo_A Lupus LA protein; RNA-b 99.7 1.1E-17 3.7E-22 140.5 9.1 118 3-121 65-186 (193)
149 2fc9_A NCL protein; structure 99.7 1.8E-17 6.2E-22 124.3 9.3 82 38-123 10-92 (101)
150 2hgn_A Heterogeneous nuclear r 99.7 2.5E-18 8.6E-23 136.4 4.5 84 38-123 41-124 (139)
151 2lxi_A RNA-binding protein 10; 99.7 3.1E-18 1.1E-22 126.2 4.7 82 122-209 2-85 (91)
152 2dnq_A RNA-binding protein 4B; 99.7 3.7E-17 1.2E-21 120.0 9.9 77 39-123 4-81 (90)
153 3q2s_C Cleavage and polyadenyl 99.7 2.1E-17 7.1E-22 142.4 9.9 81 42-122 67-150 (229)
154 2cpj_A Non-POU domain-containi 99.7 3E-17 1E-21 122.7 9.4 80 38-123 10-90 (99)
155 2ytc_A PRE-mRNA-splicing facto 99.7 5.3E-17 1.8E-21 117.7 9.9 78 37-120 6-85 (85)
156 1x4f_A Matrin 3; structural ge 99.7 2.7E-17 9.3E-22 125.3 8.5 79 39-123 21-103 (112)
157 4f25_A Polyadenylate-binding p 99.7 2.7E-17 9.3E-22 126.5 8.5 80 121-208 5-84 (115)
158 2lcw_A RNA-binding protein FUS 99.5 9E-19 3.1E-23 134.9 0.0 85 39-123 3-96 (116)
159 2la4_A Nuclear and cytoplasmic 99.7 2.6E-17 8.9E-22 123.4 8.0 79 38-122 22-101 (101)
160 1nu4_A U1A RNA binding domain; 99.7 1.4E-17 4.8E-22 123.9 6.5 82 39-123 4-90 (97)
161 1why_A Hypothetical protein ri 99.7 5.6E-17 1.9E-21 120.7 9.7 78 39-122 13-93 (97)
162 2cpx_A Hypothetical protein FL 99.7 8.8E-18 3E-22 129.0 5.4 86 38-123 20-106 (115)
163 2e5j_A Methenyltetrahydrofolat 99.7 5.3E-17 1.8E-21 120.9 9.1 81 38-123 14-95 (97)
164 2xnq_A Nuclear polyadenylated 99.7 8.4E-17 2.9E-21 119.9 10.2 78 37-122 16-95 (97)
165 2jvo_A Nucleolar protein 3; nu 99.7 4.6E-17 1.6E-21 123.8 8.8 79 37-123 25-104 (108)
166 2jvr_A Nucleolar protein 3; RN 99.7 2.3E-17 7.7E-22 125.9 7.1 78 40-121 25-104 (111)
167 2lkz_A RNA-binding protein 5; 99.7 7.1E-18 2.4E-22 125.2 4.0 79 122-206 10-94 (95)
168 1x4c_A Splicing factor, argini 99.7 8.9E-17 3E-21 122.1 9.9 77 40-123 12-94 (108)
169 3p5t_L Cleavage and polyadenyl 99.7 2.6E-17 9E-22 120.8 6.5 81 122-208 2-84 (90)
170 1x4g_A Nucleolysin TIAR; struc 99.7 8.3E-17 2.8E-21 122.4 9.3 79 39-123 21-100 (109)
171 3tyt_A Heterogeneous nuclear r 99.7 1E-16 3.4E-21 135.9 10.7 115 3-119 53-204 (205)
172 1fjc_A Nucleolin RBD2, protein 99.7 3E-17 1E-21 121.9 6.3 80 39-123 12-92 (96)
173 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 4E-21 115.3 9.2 80 122-207 2-81 (83)
174 3d2w_A TAR DNA-binding protein 99.7 6E-17 2E-21 118.8 7.7 79 39-123 7-85 (89)
175 2e5g_A U6 snRNA-specific termi 99.7 1.6E-16 5.5E-21 117.6 10.0 79 40-123 5-83 (94)
176 3bs9_A Nucleolysin TIA-1 isofo 99.7 9.2E-17 3.2E-21 116.9 8.5 81 121-207 6-86 (87)
177 2cpd_A Apobec-1 stimulating pr 99.7 2.3E-16 7.9E-21 117.8 10.5 79 37-123 9-90 (99)
178 1wf1_A RNA-binding protein RAL 99.7 1.4E-16 4.9E-21 121.3 9.4 75 40-122 24-100 (110)
179 2f3j_A RNA and export factor b 99.7 1E-16 3.4E-21 132.7 9.3 84 39-123 84-168 (177)
180 2j8a_A Histone-lysine N-methyl 99.7 7.6E-17 2.6E-21 123.9 7.9 79 44-122 3-96 (136)
181 2dgt_A RNA-binding protein 30; 99.7 1.6E-16 5.3E-21 117.1 9.3 79 38-124 5-84 (92)
182 3sde_A Paraspeckle component 1 99.7 2.2E-16 7.6E-21 138.6 11.8 106 3-122 69-179 (261)
183 1whx_A Hypothetical protein ri 99.7 3.3E-17 1.1E-21 125.2 5.7 83 42-131 9-92 (111)
184 2lea_A Serine/arginine-rich sp 99.7 2.5E-17 8.7E-22 130.3 5.1 117 87-209 6-129 (135)
185 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 5.9E-21 119.4 9.5 78 38-123 6-84 (103)
186 2dnp_A RNA-binding protein 14; 99.7 2E-16 6.7E-21 116.1 9.2 77 38-122 4-81 (90)
187 2fy1_A RNA-binding motif prote 99.7 1.9E-16 6.4E-21 122.0 9.4 86 119-211 5-90 (116)
188 3ns6_A Eukaryotic translation 99.7 3.3E-17 1.1E-21 122.8 4.9 80 121-206 6-92 (100)
189 2dnz_A Probable RNA-binding pr 99.7 1.6E-16 5.6E-21 117.6 8.6 84 120-209 4-87 (95)
190 2dgo_A Cytotoxic granule-assoc 99.7 4.4E-16 1.5E-20 119.5 11.1 86 120-211 14-99 (115)
191 2kvi_A Nuclear polyadenylated 99.7 1.3E-16 4.3E-21 118.6 7.7 76 39-122 6-83 (96)
192 2cq0_A Eukaryotic translation 99.7 2.5E-16 8.5E-21 118.4 9.3 84 120-209 14-97 (103)
193 2e44_A Insulin-like growth fac 99.7 2.3E-16 7.9E-21 117.0 8.8 79 40-122 12-92 (96)
194 3s7r_A Heterogeneous nuclear r 99.7 2.9E-16 1E-20 114.3 9.1 78 119-203 9-86 (87)
195 2div_A TRNA selenocysteine ass 99.7 3E-16 1E-20 117.1 9.3 82 120-207 8-94 (99)
196 1qm9_A Polypyrimidine tract-bi 99.7 3.2E-16 1.1E-20 131.6 10.3 115 3-122 52-197 (198)
197 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.4E-16 4.7E-21 115.4 7.0 79 120-204 6-84 (85)
198 2dh8_A DAZ-associated protein 99.7 4.4E-16 1.5E-20 117.5 10.0 83 120-209 15-97 (105)
199 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.8E-21 118.1 6.6 78 39-123 4-84 (93)
200 1whw_A Hypothetical protein ri 99.7 2.2E-16 7.6E-21 117.8 8.3 84 120-209 7-90 (99)
201 2cpf_A RNA binding motif prote 99.7 3.3E-16 1.1E-20 116.6 9.1 84 120-209 4-90 (98)
202 2adc_A Polypyrimidine tract-bi 99.7 6.5E-16 2.2E-20 133.0 12.3 115 3-122 83-228 (229)
203 1x5t_A Splicing factor 3B subu 99.7 1.7E-16 5.7E-21 117.8 7.4 84 120-209 4-88 (96)
204 2cqc_A Arginine/serine-rich sp 99.7 4E-16 1.4E-20 115.4 9.4 81 120-206 14-94 (95)
205 1s79_A Lupus LA protein; RRM, 99.7 1.1E-16 3.7E-21 120.6 6.3 79 120-206 10-88 (103)
206 3pgw_A U1-A; protein-RNA compl 99.7 6.9E-16 2.4E-20 136.7 12.6 75 41-120 205-281 (282)
207 2cpz_A CUG triplet repeat RNA- 99.7 3.4E-16 1.2E-20 120.1 9.2 83 121-209 25-107 (115)
208 2dnl_A Cytoplasmic polyadenyla 99.7 1.6E-16 5.6E-21 121.9 7.3 78 40-119 5-85 (114)
209 2dgs_A DAZ-associated protein 99.7 3.1E-16 1.1E-20 117.0 8.4 83 120-209 9-91 (99)
210 1wg1_A KIAA1579 protein, homol 99.6 2.4E-16 8.2E-21 115.1 7.6 76 41-123 3-79 (88)
211 2do4_A Squamous cell carcinoma 99.6 4.9E-16 1.7E-20 116.2 9.3 81 121-208 17-97 (100)
212 2mss_A Protein (musashi1); RNA 99.6 1.4E-16 4.9E-21 112.6 6.0 74 123-203 1-74 (75)
213 2x1f_A MRNA 3'-END-processing 99.6 2.8E-16 9.5E-21 116.7 7.6 83 121-209 2-84 (96)
214 1sjr_A Polypyrimidine tract-bi 99.6 7.8E-16 2.7E-20 124.5 10.8 84 39-126 42-128 (164)
215 1p27_B RNA-binding protein 8A; 99.6 4.1E-16 1.4E-20 117.8 8.6 81 121-207 23-103 (106)
216 1x5p_A Negative elongation fac 99.6 8.5E-16 2.9E-20 114.3 10.1 78 38-123 10-88 (97)
217 3ucg_A Polyadenylate-binding p 99.6 5.6E-16 1.9E-20 113.2 8.9 79 121-206 6-84 (89)
218 2jrs_A RNA-binding protein 39; 99.6 4.3E-16 1.5E-20 118.4 8.5 82 120-207 25-106 (108)
219 2e5h_A Zinc finger CCHC-type a 99.6 3E-16 1E-20 115.9 7.4 79 120-204 15-93 (94)
220 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.1E-16 7.1E-21 118.6 6.4 85 120-210 11-95 (102)
221 1x5u_A Splicing factor 3B subu 99.6 3.6E-16 1.2E-20 117.9 7.7 84 120-209 14-97 (105)
222 1wf0_A TDP-43, TAR DNA-binding 99.6 1.5E-16 5.1E-21 116.2 5.3 78 41-124 3-80 (88)
223 1x4e_A RNA binding motif, sing 99.6 1.8E-16 6.1E-21 114.9 5.7 79 120-204 4-82 (85)
224 2la6_A RNA-binding protein FUS 99.6 4.9E-16 1.7E-20 116.0 8.2 79 120-204 12-98 (99)
225 2dnm_A SRP46 splicing factor; 99.6 2.5E-16 8.6E-21 118.4 6.5 83 121-209 13-95 (103)
226 1x4h_A RNA-binding protein 28; 99.6 4.2E-16 1.4E-20 118.7 7.8 84 120-209 14-103 (111)
227 2dhg_A TRNA selenocysteine ass 99.6 1.1E-15 3.9E-20 115.0 10.1 83 120-209 8-92 (104)
228 1x5s_A Cold-inducible RNA-bind 99.6 2E-16 6.9E-21 118.7 5.9 84 120-209 11-94 (102)
229 2hzc_A Splicing factor U2AF 65 99.6 6.2E-16 2.1E-20 112.4 8.3 72 41-118 4-86 (87)
230 3egn_A RNA-binding protein 40; 99.6 9.4E-17 3.2E-21 128.2 4.1 80 40-122 42-130 (143)
231 2cqd_A RNA-binding region cont 99.6 1.1E-15 3.8E-20 117.4 10.0 83 120-209 16-98 (116)
232 3n9u_C Cleavage and polyadenyl 99.6 5.8E-16 2E-20 125.4 8.6 80 121-206 55-136 (156)
233 2ywk_A Putative RNA-binding pr 99.6 8.7E-16 3E-20 113.6 8.7 79 120-205 15-93 (95)
234 1p1t_A Cleavage stimulation fa 99.6 4.8E-16 1.6E-20 117.0 7.4 83 121-209 8-90 (104)
235 2dng_A Eukaryotic translation 99.6 1.3E-15 4.6E-20 114.5 9.9 82 120-209 14-95 (103)
236 1u6f_A Tcubp1, RNA-binding pro 99.6 1E-15 3.5E-20 121.5 9.5 84 121-210 42-125 (139)
237 2dnh_A Bruno-like 5, RNA bindi 99.6 1.1E-15 3.9E-20 115.2 9.2 82 121-209 15-99 (105)
238 2d9p_A Polyadenylate-binding p 99.6 1.1E-15 3.7E-20 114.9 8.9 83 119-209 13-95 (103)
239 2cph_A RNA binding motif prote 99.6 6.5E-16 2.2E-20 116.9 7.7 83 121-209 15-99 (107)
240 1oo0_B CG8781-PA, drosophila Y 99.6 5.6E-16 1.9E-20 117.9 7.3 82 121-208 26-107 (110)
241 4a8x_A RNA-binding protein wit 99.6 3.7E-16 1.3E-20 113.8 6.1 81 120-206 3-84 (88)
242 3pgw_S U1-70K; protein-RNA com 99.6 1E-16 3.5E-21 150.6 3.8 81 121-207 102-182 (437)
243 2kxn_B Transformer-2 protein h 99.6 7.6E-16 2.6E-20 120.8 8.2 83 119-207 44-126 (129)
244 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.1E-16 1.1E-20 111.3 5.3 75 123-204 2-76 (77)
245 2pe8_A Splicing factor 45; RRM 99.6 2.1E-15 7E-20 113.9 10.1 84 41-124 6-96 (105)
246 3pgw_S U1-70K; protein-RNA com 99.6 1.4E-15 4.7E-20 142.8 11.1 83 41-123 100-183 (437)
247 2cq2_A Hypothetical protein LO 99.6 6.3E-16 2.1E-20 117.9 7.1 76 40-121 22-105 (114)
248 2ek1_A RNA-binding protein 12; 99.6 4.1E-16 1.4E-20 115.4 5.9 79 121-205 15-93 (95)
249 2rs2_A Musashi-1, RNA-binding 99.6 9.8E-16 3.3E-20 116.6 8.0 81 120-207 24-104 (109)
250 2dgp_A Bruno-like 4, RNA bindi 99.6 4.5E-16 1.5E-20 117.6 6.0 84 120-209 12-98 (106)
251 2cqg_A TDP-43, TAR DNA-binding 99.6 3.2E-15 1.1E-19 112.3 10.6 81 121-209 15-95 (103)
252 1x4b_A Heterogeneous nuclear r 99.6 1.6E-15 5.4E-20 116.6 9.0 82 121-209 27-108 (116)
253 3zzy_A Polypyrimidine tract-bi 99.6 2.4E-15 8.3E-20 117.2 10.0 83 39-126 24-110 (130)
254 2ki2_A SS-DNA binding protein 99.6 3.1E-16 1.1E-20 114.9 4.7 81 122-209 2-82 (90)
255 3beg_B Splicing factor, argini 99.6 7.6E-16 2.6E-20 118.3 7.1 74 41-121 14-93 (115)
256 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1E-15 3.5E-20 125.2 8.2 82 122-209 73-154 (165)
257 1wez_A HnRNP H', FTP-3, hetero 99.6 8.2E-16 2.8E-20 115.6 7.1 80 119-207 13-92 (102)
258 2cpe_A RNA-binding protein EWS 99.6 8.7E-16 3E-20 117.5 7.3 84 120-209 14-105 (113)
259 2cqp_A RNA-binding protein 12; 99.6 6.4E-16 2.2E-20 115.0 6.3 81 120-206 14-94 (98)
260 2e5i_A Heterogeneous nuclear r 99.6 5.9E-15 2E-19 114.4 11.8 81 41-127 23-107 (124)
261 3ulh_A THO complex subunit 4; 99.6 1.7E-15 5.8E-20 114.6 8.5 79 120-205 28-106 (107)
262 2krb_A Eukaryotic translation 99.6 1E-15 3.5E-20 110.0 6.9 72 122-201 2-80 (81)
263 2hgn_A Heterogeneous nuclear r 99.6 2.8E-16 9.7E-21 124.6 4.3 113 86-207 2-123 (139)
264 1iqt_A AUF1, heterogeneous nuc 99.6 3.1E-16 1.1E-20 110.8 4.1 74 123-203 1-74 (75)
265 2khc_A Testis-specific RNP-typ 99.6 7.7E-16 2.6E-20 118.7 6.6 78 121-204 40-117 (118)
266 2hgl_A HNRPF protein, heteroge 99.6 4.8E-16 1.7E-20 122.8 5.5 79 120-206 43-124 (136)
267 1sjq_A Polypyrimidine tract-bi 99.6 1.3E-15 4.6E-20 114.4 7.5 80 120-209 15-94 (105)
268 1wi8_A EIF-4B, eukaryotic tran 99.6 1.5E-15 5.2E-20 114.3 7.8 82 120-209 14-96 (104)
269 2m2b_A RNA-binding protein 10; 99.6 6E-16 2E-20 121.7 5.7 80 121-207 23-108 (131)
270 2do0_A HnRNP M, heterogeneous 99.6 5.4E-15 1.8E-19 113.1 10.8 82 121-209 15-96 (114)
271 2dgv_A HnRNP M, heterogeneous 99.6 3.3E-15 1.1E-19 109.8 9.2 81 120-208 7-87 (92)
272 2jwn_A Embryonic polyadenylate 99.6 3.3E-15 1.1E-19 116.1 9.6 79 121-206 36-114 (124)
273 2cpi_A CCR4-NOT transcription 99.6 1.6E-15 5.5E-20 115.7 7.6 84 119-208 13-102 (111)
274 2cq3_A RNA-binding protein 9; 99.6 3.8E-15 1.3E-19 111.9 9.1 83 120-210 14-96 (103)
275 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1E-15 3.4E-20 114.6 5.9 81 119-207 17-98 (100)
276 2diu_A KIAA0430 protein; struc 99.6 3.6E-15 1.2E-19 108.4 8.4 74 42-125 8-87 (96)
277 2cqi_A Nucleolysin TIAR; RNA r 99.6 3E-15 1E-19 112.5 8.1 83 120-210 14-96 (103)
278 2dgx_A KIAA0430 protein; RRM d 99.6 1.6E-15 5.4E-20 112.7 6.5 80 120-208 8-91 (96)
279 2dis_A Unnamed protein product 99.6 2.9E-15 9.8E-20 113.7 8.0 83 121-209 8-94 (109)
280 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.6E-15 1.6E-19 120.0 9.6 84 120-209 38-121 (156)
281 2dgw_A Probable RNA-binding pr 99.6 4.9E-15 1.7E-19 108.7 8.7 80 120-208 9-88 (91)
282 2bz2_A Negative elongation fac 99.6 3.7E-15 1.3E-19 115.5 8.4 78 38-123 34-112 (121)
283 3ex7_B RNA-binding protein 8A; 99.6 1.8E-15 6.3E-20 117.9 6.6 84 121-210 22-105 (126)
284 2cq4_A RNA binding motif prote 99.6 1.1E-15 3.8E-20 117.1 5.1 81 121-208 25-105 (114)
285 1wg5_A Heterogeneous nuclear r 99.6 2.7E-15 9.4E-20 113.1 7.1 78 121-206 15-93 (104)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.1E-15 1E-19 118.6 7.6 79 120-204 62-140 (140)
287 2wbr_A GW182, gawky, LD47780P; 99.6 1.6E-15 5.4E-20 109.3 5.3 72 122-205 8-79 (89)
288 2cpy_A RNA-binding protein 12; 99.6 1.4E-15 4.9E-20 116.6 5.0 81 120-208 14-95 (114)
289 2j8a_A Histone-lysine N-methyl 99.6 4.9E-15 1.7E-19 113.9 7.4 82 121-206 2-95 (136)
290 2nlw_A Eukaryotic translation 99.6 3.7E-15 1.3E-19 112.5 6.7 79 121-207 15-100 (105)
291 3q2s_C Cleavage and polyadenyl 99.6 5.6E-15 1.9E-19 127.1 8.3 81 120-206 67-149 (229)
292 2db1_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 114.9 6.5 78 121-206 17-97 (118)
293 2dnn_A RNA-binding protein 12; 99.6 4.5E-15 1.5E-19 112.8 6.6 75 122-205 17-91 (109)
294 2kt5_A RNA and export factor-b 99.6 6.7E-15 2.3E-19 114.4 7.5 80 121-207 35-114 (124)
295 1x5o_A RNA binding motif, sing 99.6 1E-14 3.5E-19 111.6 8.3 71 120-197 24-94 (114)
296 2xs2_A Deleted in azoospermia- 99.5 5.7E-15 2E-19 110.7 6.7 77 121-206 9-85 (102)
297 2err_A Ataxin-2-binding protei 99.5 5.3E-15 1.8E-19 112.4 5.9 79 121-207 29-107 (109)
298 1x4a_A Splicing factor, argini 99.5 1.3E-14 4.4E-19 110.2 8.0 81 120-209 21-101 (109)
299 2cq1_A PTB-like protein L; RRM 99.5 9.3E-15 3.2E-19 109.5 6.9 80 121-210 15-94 (101)
300 2dha_A FLJ20171 protein; RRM d 99.5 7.3E-15 2.5E-19 114.0 6.3 77 121-205 23-103 (123)
301 1wel_A RNA-binding protein 12; 99.5 3.1E-15 1.1E-19 116.4 4.0 80 121-207 25-104 (124)
302 3lqv_A PRE-mRNA branch site pr 99.5 1.6E-15 5.6E-20 116.3 2.4 81 120-209 7-87 (115)
303 2hgm_A HNRPF protein, heteroge 99.5 6.8E-15 2.3E-19 114.5 5.7 76 121-205 42-119 (126)
304 2lmi_A GRSF-1, G-rich sequence 99.5 3E-15 1E-19 113.4 3.5 79 120-206 10-91 (107)
305 2fc9_A NCL protein; structure 99.5 1.5E-14 5.3E-19 108.1 6.9 80 120-209 14-93 (101)
306 2ad9_A Polypyrimidine tract-bi 99.5 1.3E-14 4.5E-19 111.6 6.5 77 121-209 31-109 (119)
307 3u1l_A PRE-mRNA-splicing facto 99.5 2.2E-14 7.5E-19 123.4 8.3 78 39-122 130-229 (240)
308 2jvr_A Nucleolar protein 3; RN 99.5 1.2E-14 4.2E-19 110.6 5.9 77 121-207 28-105 (111)
309 2lcw_A RNA-binding protein FUS 99.3 1.1E-15 3.7E-20 117.5 0.0 84 120-209 6-97 (116)
310 1x4c_A Splicing factor, argini 99.5 4.9E-14 1.7E-18 106.8 9.1 76 121-209 15-95 (108)
311 1fj7_A Nucleolin RBD1, protein 99.5 1.5E-15 5E-20 113.8 0.2 81 121-209 17-97 (101)
312 2dnq_A RNA-binding protein 4B; 99.5 4.1E-14 1.4E-18 103.6 8.0 76 120-209 7-82 (90)
313 2dit_A HIV TAT specific factor 99.5 9E-14 3.1E-18 106.1 10.1 84 37-124 9-104 (112)
314 3r27_A HnRNP L, heterogeneous 99.5 1.8E-14 6.1E-19 107.2 5.7 74 121-206 21-96 (100)
315 2hvz_A Splicing factor, argini 99.5 2.3E-14 7.8E-19 107.2 6.2 76 123-209 2-77 (101)
316 2fc8_A NCL protein; structure 99.5 5.8E-14 2E-18 105.1 8.4 81 120-209 14-94 (102)
317 1wex_A Hypothetical protein (r 99.5 2.8E-14 9.6E-19 107.4 6.7 79 121-209 15-93 (104)
318 2a3j_A U1 small nuclear ribonu 99.5 2E-14 6.8E-19 112.2 6.0 79 121-208 29-111 (127)
319 1x4g_A Nucleolysin TIAR; struc 99.5 3.4E-14 1.2E-18 107.9 7.1 78 121-210 25-102 (109)
320 1x4d_A Matrin 3; structural ge 99.5 1.5E-14 5E-19 108.4 4.9 76 121-208 15-93 (102)
321 1fjc_A Nucleolin RBD2, protein 99.5 2.1E-14 7.2E-19 106.3 5.7 78 121-209 16-93 (96)
322 1why_A Hypothetical protein ri 99.5 5E-14 1.7E-18 104.6 6.8 76 121-208 17-94 (97)
323 2la4_A Nuclear and cytoplasmic 99.5 5.8E-14 2E-18 105.0 7.1 74 121-206 27-100 (101)
324 2ytc_A PRE-mRNA-splicing facto 99.5 8.5E-14 2.9E-18 100.6 7.7 73 120-204 11-84 (85)
325 2dgu_A Heterogeneous nuclear r 99.5 7.4E-14 2.5E-18 104.8 7.6 78 120-211 10-87 (103)
326 2cpx_A Hypothetical protein FL 99.5 7.5E-15 2.6E-19 112.5 2.2 84 121-210 25-108 (115)
327 2cpj_A Non-POU domain-containi 99.5 5E-14 1.7E-18 105.0 6.2 78 120-209 14-91 (99)
328 2voo_A Lupus LA protein; RNA-b 99.5 2.4E-13 8.4E-18 113.8 10.7 105 94-206 63-186 (193)
329 2jvo_A Nucleolar protein 3; nu 99.5 8.3E-14 2.9E-18 105.6 7.0 76 120-209 30-105 (108)
330 1x4f_A Matrin 3; structural ge 99.5 3.5E-14 1.2E-18 108.0 4.7 78 120-207 24-102 (112)
331 1jmt_A Splicing factor U2AF 35 99.5 2.4E-14 8.3E-19 107.8 3.5 71 48-119 20-103 (104)
332 2f3j_A RNA and export factor b 99.5 6.7E-14 2.3E-18 115.6 6.3 80 121-207 88-167 (177)
333 2e5j_A Methenyltetrahydrofolat 99.5 5.5E-14 1.9E-18 104.4 5.2 77 120-207 18-94 (97)
334 3d2w_A TAR DNA-binding protein 99.5 1.2E-13 4.1E-18 101.0 6.9 75 119-206 9-83 (89)
335 2xnq_A Nuclear polyadenylated 99.5 1.4E-13 4.8E-18 102.3 7.4 74 120-207 21-95 (97)
336 3v4m_A Splicing factor U2AF 65 99.4 1.3E-13 4.4E-18 104.0 7.1 81 42-122 4-97 (105)
337 1nu4_A U1A RNA binding domain; 99.4 3E-14 1E-18 105.7 3.5 79 121-208 8-90 (97)
338 2e5g_A U6 snRNA-specific termi 99.4 4.7E-13 1.6E-17 98.7 9.9 75 121-207 8-82 (94)
339 2dnp_A RNA-binding protein 14; 99.4 1.4E-13 4.8E-18 100.6 6.7 76 120-209 8-83 (90)
340 2dgt_A RNA-binding protein 30; 99.4 2.4E-13 8.1E-18 99.8 7.9 76 120-209 9-84 (92)
341 2dnl_A Cytoplasmic polyadenyla 99.4 7.2E-14 2.5E-18 107.0 5.2 63 120-183 7-72 (114)
342 1whx_A Hypothetical protein ri 99.4 8.9E-14 3E-18 106.0 5.6 75 121-207 10-84 (111)
343 2kvi_A Nuclear polyadenylated 99.4 1.2E-13 4.2E-18 102.3 6.1 76 120-209 9-85 (96)
344 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.1E-12 3.6E-17 97.9 11.1 74 43-122 10-90 (100)
345 2pe8_A Splicing factor 45; RRM 99.4 2.6E-13 8.9E-18 102.3 7.7 79 122-206 9-93 (105)
346 1wf1_A RNA-binding protein RAL 99.4 1.8E-13 6.3E-18 103.9 6.7 72 122-207 28-100 (110)
347 1wg1_A KIAA1579 protein, homol 99.4 1.5E-13 5.3E-18 100.1 5.7 74 121-207 5-78 (88)
348 2cpd_A Apobec-1 stimulating pr 99.4 4.6E-13 1.6E-17 99.7 8.4 75 121-209 15-91 (99)
349 3ue2_A Poly(U)-binding-splicin 99.4 3.6E-13 1.2E-17 103.6 7.9 81 42-122 19-109 (118)
350 3egn_A RNA-binding protein 40; 99.4 4.6E-14 1.6E-18 112.4 2.6 79 121-208 45-131 (143)
351 2cq2_A Hypothetical protein LO 99.4 1.3E-13 4.4E-18 105.0 4.7 73 121-205 25-104 (114)
352 2cqh_A IGF-II mRNA-binding pro 99.4 1.4E-13 4.8E-18 101.3 4.7 77 120-209 7-85 (93)
353 1sjr_A Polypyrimidine tract-bi 99.4 3.5E-13 1.2E-17 108.9 7.3 76 122-207 47-124 (164)
354 1x5p_A Negative elongation fac 99.4 9.5E-13 3.3E-17 97.6 8.9 75 121-209 15-89 (97)
355 3beg_B Splicing factor, argini 99.4 2.7E-13 9.2E-18 104.0 6.1 68 121-201 16-83 (115)
356 3zzy_A Polypyrimidine tract-bi 99.4 6.3E-13 2.2E-17 103.5 8.1 75 122-207 29-106 (130)
357 1wf0_A TDP-43, TAR DNA-binding 99.4 3.6E-13 1.2E-17 98.0 5.4 75 120-207 4-78 (88)
358 2e44_A Insulin-like growth fac 99.4 3.3E-13 1.1E-17 99.8 5.4 77 121-207 15-92 (96)
359 1jmt_A Splicing factor U2AF 35 99.4 4.1E-13 1.4E-17 101.1 5.5 72 126-204 20-103 (104)
360 2hzc_A Splicing factor U2AF 65 99.4 1E-12 3.4E-17 95.2 6.4 70 120-202 5-85 (87)
361 3v4m_A Splicing factor U2AF 65 99.3 7.4E-13 2.5E-17 99.8 4.8 71 130-206 24-96 (105)
362 2diu_A KIAA0430 protein; struc 99.3 1.6E-12 5.4E-17 94.5 6.2 73 124-212 12-89 (96)
363 2e5i_A Heterogeneous nuclear r 99.3 2.3E-12 8E-17 99.7 7.5 73 123-207 27-102 (124)
364 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.7E-11 6E-16 91.3 10.2 83 111-209 10-92 (100)
365 3tht_A Alkylated DNA repair pr 99.3 4.2E-12 1.4E-16 114.9 8.1 74 40-119 15-96 (345)
366 2bz2_A Negative elongation fac 99.3 3.3E-12 1.1E-16 98.8 5.8 74 121-208 39-112 (121)
367 3u1l_A PRE-mRNA-splicing facto 99.3 4.6E-12 1.6E-16 109.0 6.6 78 120-209 133-231 (240)
368 3ue2_A Poly(U)-binding-splicin 99.2 7.5E-12 2.6E-16 96.2 6.2 67 134-206 38-108 (118)
369 2dit_A HIV TAT specific factor 99.2 1.9E-11 6.4E-16 93.1 8.2 79 120-208 14-103 (112)
370 3s6e_A RNA-binding protein 39; 99.2 4.6E-11 1.6E-15 91.1 7.9 77 41-121 5-92 (114)
371 3s6e_A RNA-binding protein 39; 99.1 7.6E-11 2.6E-15 89.9 4.4 63 134-206 30-92 (114)
372 2dnr_A Synaptojanin-1; RRM dom 99.1 5.9E-10 2E-14 80.3 8.5 74 41-122 5-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.0 7.5E-10 2.6E-14 84.8 8.5 76 39-120 14-94 (121)
374 3tht_A Alkylated DNA repair pr 99.0 2.2E-10 7.4E-15 103.6 5.6 65 118-194 15-81 (345)
375 3dxb_A Thioredoxin N-terminall 98.9 3.5E-09 1.2E-13 90.2 7.8 69 55-123 141-214 (222)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 2.8E-09 9.7E-14 77.1 5.7 74 40-121 12-94 (95)
377 3dxb_A Thioredoxin N-terminall 98.8 1.9E-08 6.5E-13 85.6 10.4 106 89-205 100-211 (222)
378 1owx_A Lupus LA protein, SS-B, 98.7 1.6E-08 5.6E-13 77.3 6.0 75 119-203 16-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.6 4E-08 1.4E-12 70.6 5.8 56 136-206 30-85 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.4 1.5E-07 5.1E-12 68.1 3.7 55 136-205 39-93 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.3 1E-05 3.4E-10 59.2 10.5 87 40-134 5-99 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.1 1.2E-05 4E-10 59.4 7.8 72 41-118 19-96 (117)
383 2l9w_A U4/U6 snRNA-associated- 97.8 3.1E-05 1.1E-09 57.1 6.2 71 121-203 21-96 (117)
384 1wwh_A Nucleoporin 35, nucleop 97.5 0.00035 1.2E-08 52.6 7.6 74 40-120 21-95 (119)
385 1whv_A Poly(A)-specific ribonu 97.5 0.00036 1.2E-08 50.4 7.1 53 43-104 16-68 (100)
386 1uw4_A UPF3X; nonsense mediate 97.3 0.0013 4.4E-08 47.3 8.0 68 44-111 2-72 (91)
387 3ctr_A Poly(A)-specific ribonu 97.1 0.00094 3.2E-08 48.3 5.7 52 45-104 7-58 (101)
388 1wey_A Calcipressin 1; structu 97.1 0.0017 5.7E-08 47.6 6.9 74 43-122 5-84 (104)
389 2dhx_A Poly (ADP-ribose) polym 96.3 0.022 7.5E-07 41.5 8.2 69 120-203 7-80 (104)
390 1wey_A Calcipressin 1; structu 96.3 0.013 4.3E-07 42.9 7.0 75 119-205 3-82 (104)
391 3pq1_A Poly(A) RNA polymerase; 96.2 0.0027 9.2E-08 59.3 3.9 64 43-112 53-116 (464)
392 3p3d_A Nucleoporin 53; structu 96.2 0.0048 1.6E-07 47.1 4.3 78 43-121 7-98 (132)
393 1wwh_A Nucleoporin 35, nucleop 96.2 0.02 6.8E-07 43.0 7.6 62 121-196 24-85 (119)
394 1whv_A Poly(A)-specific ribonu 95.9 0.016 5.6E-07 41.7 5.6 50 124-181 18-67 (100)
395 1uw4_A UPF3X; nonsense mediate 95.7 0.056 1.9E-06 38.6 7.8 67 123-195 3-71 (91)
396 2l08_A Regulator of nonsense t 95.6 0.011 3.9E-07 42.7 3.8 70 42-111 8-80 (97)
397 3ctr_A Poly(A)-specific ribonu 95.0 0.028 9.7E-07 40.6 4.5 50 124-181 8-57 (101)
398 3pq1_A Poly(A) RNA polymerase; 93.1 0.044 1.5E-06 51.1 2.9 54 122-181 54-107 (464)
399 2l08_A Regulator of nonsense t 92.6 0.13 4.4E-06 37.1 4.1 69 122-196 10-80 (97)
400 2ljs_A Trypsin inhibitor 3; be 92.5 0.034 1.2E-06 29.7 0.7 11 293-303 20-30 (30)
401 3d45_A Poly(A)-specific ribonu 90.9 0.52 1.8E-05 44.6 7.5 53 43-104 440-492 (507)
402 3p3d_A Nucleoporin 53; structu 88.5 0.27 9.3E-06 37.4 2.8 72 124-203 10-95 (132)
403 1h9h_I EETI-II, trypsin inhibi 77.5 0.72 2.5E-05 25.9 0.8 13 292-304 17-29 (36)
404 2po8_A Mcoti-II; oxidative fol 76.1 0.8 2.7E-05 25.4 0.7 13 292-304 16-28 (34)
405 1lu0_A CMTI-I, trypsin inhibit 71.4 1.3 4.3E-05 23.9 0.7 11 292-302 18-28 (29)
406 1rpb_A Tricyclic peptide RP 71 62.9 3 0.0001 21.2 1.1 11 296-306 1-11 (26)
407 3d45_A Poly(A)-specific ribonu 61.7 13 0.00044 35.0 6.1 50 124-181 442-491 (507)
408 1h9i_I EETI-II, trypsin inhibi 50.8 5 0.00017 22.4 0.8 13 292-304 17-29 (36)
409 1xn9_A 30S ribosomal protein S 40.4 87 0.003 22.3 6.2 48 53-101 28-80 (101)
410 1ywx_A 30S ribosomal protein S 38.1 91 0.0031 22.3 6.0 47 53-100 28-79 (102)
411 2v94_A RPS24, 30S ribosomal pr 35.8 1E+02 0.0034 22.3 6.0 48 53-101 37-89 (107)
412 2c4b_A Barnase mcoeeti fusion; 32.8 13 0.00043 28.5 0.8 13 292-304 131-143 (143)
413 4e8u_A Putative uncharacterize 30.2 1.1E+02 0.0037 24.2 5.8 46 55-103 33-81 (172)
414 2i9x_A Putative septation prot 25.4 1.1E+02 0.0039 21.1 4.6 26 147-172 5-30 (87)
415 3u5c_Y RP50, 40S ribosomal pro 25.4 2.2E+02 0.0074 21.4 6.6 47 53-100 33-84 (135)
416 3j21_T 50S ribosomal protein L 24.4 1.8E+02 0.006 20.0 6.5 53 47-102 26-80 (86)
417 3ts2_A Protein LIN-28 homolog 23.8 16 0.00055 28.2 -0.1 28 136-171 2-29 (148)
418 2ia9_A Putative septation prot 21.7 1.4E+02 0.0048 21.2 4.6 26 147-172 5-30 (100)
419 2i9z_A Putative septation prot 20.9 1.5E+02 0.0052 21.2 4.6 26 147-172 5-30 (105)
420 3mfb_A Uncharacterized protein 20.7 1.5E+02 0.0053 22.9 5.0 37 55-91 3-42 (157)
421 2xzm_P RPS24E; ribosome, trans 20.6 2E+02 0.007 22.0 5.5 48 53-101 31-83 (149)
422 2i9x_A Putative septation prot 20.5 1.5E+02 0.005 20.5 4.4 26 69-94 5-30 (87)
423 3fut_A Dimethyladenosine trans 20.5 1E+02 0.0034 26.1 4.3 52 44-112 111-162 (271)
424 3swz_A Steroid 17-alpha-hydrox 20.4 1.2E+02 0.0042 27.2 5.3 59 46-113 17-79 (494)
425 1vq8_S 50S ribosomal protein L 20.3 2.1E+02 0.0073 19.5 5.6 52 47-101 25-78 (85)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2e-35 Score=248.80 Aligned_cols=167 Identities=50% Similarity=0.870 Sum_probs=151.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
+.++...++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.++++|.+|++.++..+.|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 45566789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred eeccc-------------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcC
Q psy14686 117 KRAVP-------------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183 (306)
Q Consensus 117 ~~~~~-------------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~ 183 (306)
.++.+ ++++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~-- 164 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-- 164 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH--
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH--
Confidence 88753 469999999999999999999999999999999999899999999999999999999995
Q ss_pred cceeccCceEecCcccccccCcccccc
Q psy14686 184 VVVLEVDQEVINGEDHRTHGTHQEAKV 210 (306)
Q Consensus 184 ~~~~~~~~~~i~g~~i~v~~~~~~~~~ 210 (306)
.++..+.|+.+.+.++..+...
T Consensus 165 -----~~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 165 -----QKYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp -----CSCCEETTEECEEEECC-----
T ss_pred -----hCCcEECCEEEEEEecCChhHh
Confidence 3678899999999877655443
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.6e-35 Score=250.75 Aligned_cols=159 Identities=18% Similarity=0.372 Sum_probs=147.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
.+.+||||+|||+++||++|+++|++||+|.+|+|++++.+|+++|||||+|.++++|.+|++. ++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3568999999999999999999999999999999999999999999999999999999999988 999999999999887
Q ss_pred cc---------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccC
Q psy14686 120 VP---------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVD 190 (306)
Q Consensus 120 ~~---------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~ 190 (306)
.. .+++|+|||+.+++++|+++|++||.|.+++|++|. +.++|||||+|.+.++|++|+. .+|
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~------~ln 164 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE------KMN 164 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHH------HHT
T ss_pred cccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHH------HhC
Confidence 54 469999999999999999999999999999999985 5589999999999999999997 789
Q ss_pred ceEecCcccccccCccc
Q psy14686 191 QEVINGEDHRTHGTHQE 207 (306)
Q Consensus 191 ~~~i~g~~i~v~~~~~~ 207 (306)
+..|.|+.+.|.++..+
T Consensus 165 g~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TCEETTEECEEEECCCH
T ss_pred CCEECCEEEEEEEcCCC
Confidence 99999999999877544
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-34 Score=233.95 Aligned_cols=155 Identities=21% Similarity=0.377 Sum_probs=145.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccc-
Q psy14686 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVP- 121 (306)
Q Consensus 44 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~- 121 (306)
|+|||+|||+++|+++|+++|++||+|.+|++++++ +++++|||||+|.++++|.+|++. ++..+.|+.+.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999998 588999999999999999999966 99999999999988754
Q ss_pred --------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceE
Q psy14686 122 --------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEV 193 (306)
Q Consensus 122 --------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~ 193 (306)
..++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|+. .+++..
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~ 153 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD------SMQGQD 153 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH------HHTTCE
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH------HhCCCc
Confidence 359999999999999999999999999999999999999999999999999999999997 789999
Q ss_pred ecCcccccccCc
Q psy14686 194 INGEDHRTHGTH 205 (306)
Q Consensus 194 i~g~~i~v~~~~ 205 (306)
+.|+.+++.++.
T Consensus 154 ~~g~~i~v~~a~ 165 (166)
T 3md3_A 154 LNGRPLRINWAA 165 (166)
T ss_dssp ETTEECEEEESC
T ss_pred cCCcEEEEEecC
Confidence 999999998764
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.2e-34 Score=237.91 Aligned_cols=157 Identities=34% Similarity=0.675 Sum_probs=146.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeeccc
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVP 121 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~~~ 121 (306)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.++++|.+|++. +..+.|+.|.+.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999995 6789999999988754
Q ss_pred -------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe
Q psy14686 122 -------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI 194 (306)
Q Consensus 122 -------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i 194 (306)
.+++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+ .+++..+
T Consensus 81 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~-------~~~~~~~ 153 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC-------QNKFIDF 153 (167)
T ss_dssp HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH-------HCSEECS
T ss_pred hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH-------hCCCEEe
Confidence 46999999999999999999999999999999999889999999999999999999998 4688889
Q ss_pred cCcccccccCcc
Q psy14686 195 NGEDHRTHGTHQ 206 (306)
Q Consensus 195 ~g~~i~v~~~~~ 206 (306)
.|+.+.+.++..
T Consensus 154 ~g~~i~V~~a~p 165 (167)
T 2cjk_A 154 KDRKIEIKRAEP 165 (167)
T ss_dssp SSSCEEEEECCC
T ss_pred CCeEEEEeecCC
Confidence 999999987654
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.9e-34 Score=232.18 Aligned_cols=154 Identities=22% Similarity=0.421 Sum_probs=144.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccc
Q psy14686 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVP 121 (306)
Q Consensus 43 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~ 121 (306)
.++|||+|||+++|+++|+++|++||+|.++++++++.+|+++|||||+|.++++|.+|++. ++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998999999999999999999999996 99999999999998764
Q ss_pred -------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe
Q psy14686 122 -------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI 194 (306)
Q Consensus 122 -------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i 194 (306)
.+++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|+. .+++..+
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~------~l~g~~~ 155 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK------GLNGQKP 155 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH------HHTTCCC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHH------HhcCCcc
Confidence 458999999999999999999999999999999998899999999999999999999997 7889899
Q ss_pred cCcccccc
Q psy14686 195 NGEDHRTH 202 (306)
Q Consensus 195 ~g~~i~v~ 202 (306)
.|+.+.+.
T Consensus 156 ~g~~~~i~ 163 (167)
T 1fxl_A 156 SGATEPIT 163 (167)
T ss_dssp TTCSSCCE
T ss_pred CCCccceE
Confidence 98774443
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.5e-34 Score=233.97 Aligned_cols=156 Identities=21% Similarity=0.349 Sum_probs=145.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecc
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAV 120 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~ 120 (306)
+.++|||+|||+++|+++|+++|++||+|.++++++++.+|+++|||||+|.++++|.+|++. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999986 9999999999999876
Q ss_pred c-------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceE
Q psy14686 121 P-------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEV 193 (306)
Q Consensus 121 ~-------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~ 193 (306)
+ ..++|+|||..+++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|+. .+++..
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~ 155 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS------ALNNVI 155 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH------HHTTCC
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH------HhcCCE
Confidence 4 469999999999999999999999999999999998889999999999999999999997 788888
Q ss_pred ecC--ccccccc
Q psy14686 194 ING--EDHRTHG 203 (306)
Q Consensus 194 i~g--~~i~v~~ 203 (306)
+.| +.+++.+
T Consensus 156 ~~g~~~~l~V~~ 167 (168)
T 1b7f_A 156 PEGGSQPLSVRL 167 (168)
T ss_dssp CTTCSSCCEEEE
T ss_pred ecCCCeEEEEEe
Confidence 877 6776654
No 7
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.8e-33 Score=249.50 Aligned_cols=187 Identities=12% Similarity=0.158 Sum_probs=171.2
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
+.++.|++.++|..+.|+++.+...+ ..++|||+|||+++|+++|+++|++||+|.+++++.++.+|
T Consensus 68 ~~A~~A~~~l~~~~~~g~~i~v~~~~-------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 68 EQAEAAINAFHQSRLRERELSVQLQP-------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECC-------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred HHHHHHHHHcCCCeeCCeEEEEEecC-------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 46789999999999999999987532 35799999999999999999999999999999999999899
Q ss_pred CcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecccc----------ceeeccccccc-chHHHHHHhccCCCeeE
Q psy14686 83 RSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPR----------EVKVRRVTKVQ-IALEQMDYFGQYGTIES 150 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~----------~~~v~nl~~~~-~e~~l~~~F~~~G~I~~ 150 (306)
+++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.+. .++|+|||..+ ++++|+++|++||.|.+
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~ 214 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTF 214 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEE
Confidence 9999999999999999999966 999999999999987653 58999999996 89999999999999999
Q ss_pred EEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCccccc
Q psy14686 151 VNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQEAK 209 (306)
Q Consensus 151 v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~~~~ 209 (306)
++|++++ +|.++|+|||+|.+.++|.+|+. .+++..+.|+.+++.++.....
T Consensus 215 v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 215 CQLACGQ-DGQLKGFAVLEYETAEMAEEAQQ------QADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEECS-SCCEEEEEEEECSSHHHHHHHHH------HHTTCEETTEECEEEECCSSSC
T ss_pred EEEEECC-CCCcccEEEEEeCCHHHHHHHHH------HhCCCccCCeEEEEEEecCCCc
Confidence 9999986 69999999999999999999997 7899999999999998765443
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.2e-33 Score=239.80 Aligned_cols=163 Identities=20% Similarity=0.401 Sum_probs=148.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
...++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.++++|.+|++. ++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3468999999999999999999999999999999999988999999999999999999999996 999999999999775
Q ss_pred cc------------------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHh
Q psy14686 120 VP------------------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVL 181 (306)
Q Consensus 120 ~~------------------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~ 181 (306)
.. +.++|+|||..+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 43 469999999999999999999999999999999999899999999999999999999997
Q ss_pred cCcceeccCceEecCcccccccCccccc
Q psy14686 182 DKVVVLEVDQEVINGEDHRTHGTHQEAK 209 (306)
Q Consensus 182 ~~~~~~~~~~~~i~g~~i~v~~~~~~~~ 209 (306)
.+++..+.|+.+++.++...+.
T Consensus 186 ------~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 186 ------SMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp ------HHTTCBCSSSBCEEEECSSCSS
T ss_pred ------HccCCEeCCcEEEEEEecCCCC
Confidence 7899999999999997765543
No 9
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=9.5e-34 Score=253.51 Aligned_cols=206 Identities=11% Similarity=0.118 Sum_probs=170.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEE
Q psy14686 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVE 115 (306)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~ 115 (306)
....+...++|||+|||+++|+++|+++|++||+|.+|++++++. + ++|||||+|.++++|.+|++.++..+.|+.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 345667889999999999999999999999999999999999873 3 58999999999999999998899999999999
Q ss_pred EeeccccceeecccccccchHHHHHHhccCC-CeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe
Q psy14686 116 TKRAVPREVKVRRVTKVQIALEQMDYFGQYG-TIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI 194 (306)
Q Consensus 116 v~~~~~~~~~v~nl~~~~~e~~l~~~F~~~G-~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i 194 (306)
|.++...+++|+|||..+++++|+++|++|| .|.++++++++. |.++|||||+|.+.++|++|+. .+++..+
T Consensus 112 v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~------~l~g~~~ 184 (292)
T 2ghp_A 112 VSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVE------KLNGLKI 184 (292)
T ss_dssp EEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH------HHTTCEE
T ss_pred EEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHH------HhCCCEe
Confidence 9999999999999999999999999999999 999999999875 8899999999999999999997 6899999
Q ss_pred cCcccccccCccccccCC-----CcccccccCCCccc-CCCCchhhhccCCCceEEEEEecc
Q psy14686 195 NGEDHRTHGTHQEAKVDG-----VTTTNQTHGTIREV-VGMDNSKVVAGEIKEVGVVSLVVD 250 (306)
Q Consensus 195 ~g~~i~v~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~fg~~g~i~~v~~~~~ 250 (306)
.|+.+.+.++........ .......+++++.. ..++.+..+|+.||.+..+.+..+
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~ 246 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG 246 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec
Confidence 999999987654433221 22344557888888 899999999999999999987655
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.1e-32 Score=225.86 Aligned_cols=156 Identities=21% Similarity=0.350 Sum_probs=138.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC--CcceEEEEEecChHHHHHHHHc-CCCccC---CcEEE
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK--RSRGFGFITYSESKMVDEAMSN-RPHEID---GRVVE 115 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g--~~kg~afV~f~~~~~a~~Al~~-~~~~~~---g~~i~ 115 (306)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+| +++|||||+|.++++|++|++. ++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998776 8999999999999999999987 776665 57777
Q ss_pred Eeeccc--------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCccee
Q psy14686 116 TKRAVP--------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVL 187 (306)
Q Consensus 116 v~~~~~--------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~ 187 (306)
+.++.+ ++++|+|||..+++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~------ 154 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIK------ 154 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHH------
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHH------
Confidence 776543 469999999999999999999999999999999996 59999999999999999999998
Q ss_pred ccCceEec---CcccccccC
Q psy14686 188 EVDQEVIN---GEDHRTHGT 204 (306)
Q Consensus 188 ~~~~~~i~---g~~i~v~~~ 204 (306)
.+|+..+. ++++.+.++
T Consensus 155 ~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 155 AMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHTTSCCCTTCSSCCEEEEC
T ss_pred HhcCCcccCCCCCCeEEEec
Confidence 66766554 377777654
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.5e-32 Score=243.35 Aligned_cols=197 Identities=13% Similarity=0.206 Sum_probs=175.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
.+.++|||+|||+++|+++|+++|++|| |.++.+ ++++|||||+|.++++|.+|++. ++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3468999999999999999999999999 999987 45788999999999999999987 999999999999987
Q ss_pred cc-cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VP-REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~-~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
.+ .+++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|+. .+++..+.|+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~------~l~~~~~~g~~ 166 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKS------DLLGKPLGPRT 166 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH------HHTTCEETTEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHH------HhCCCEeCCcE
Confidence 54 479999999999999999999999999999999999999999999999999999999997 78889999999
Q ss_pred cccccCccccccCC-CcccccccCCCcccC-CCCchhhhccCCCceEEEEEecc
Q psy14686 199 HRTHGTHQEAKVDG-VTTTNQTHGTIREVV-GMDNSKVVAGEIKEVGVVSLVVD 250 (306)
Q Consensus 199 i~v~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~fg~~g~i~~v~~~~~ 250 (306)
+.+.++........ .......+++++... .++.+..+|+.+|.+..+.+..+
T Consensus 167 i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 167 LYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred EEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 99988765543332 334456688999985 78999999999999998887665
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=6.1e-32 Score=241.76 Aligned_cols=182 Identities=13% Similarity=0.232 Sum_probs=158.6
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccC-CEEEEEEeeCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWG-EIVDVVVMKDPVT 81 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~ 81 (306)
..++.|++ ++|..+.|+++.+... ..++|||+|||+++|+++|+++|++|| +|.+|+++.++.
T Consensus 92 ~~A~~A~~-~~~~~~~g~~i~v~~~--------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~- 155 (292)
T 2ghp_A 92 DGALAAIT-KTHKVVGQNEIIVSHL--------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF- 155 (292)
T ss_dssp HHHHHHHT-TTTCEETTEECEEEEC--------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----
T ss_pred HHHHHHHH-hCCcEeCCcEEEEEEC--------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-
Confidence 46788995 9999999999888653 368999999999999999999999999 999999999874
Q ss_pred CCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccc--------------cceeecccccc-cchHHHHHHhccC
Q psy14686 82 KRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVP--------------REVKVRRVTKV-QIALEQMDYFGQY 145 (306)
Q Consensus 82 g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~--------------~~~~v~nl~~~-~~e~~l~~~F~~~ 145 (306)
|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.+ ..++|+|||.. +++++|+++|++|
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~ 235 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGF 235 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGG
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhcc
Confidence 88999999999999999999996 99999999999998643 46899999999 9999999999999
Q ss_pred CCeeEEEEEecCC-CCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCccc
Q psy14686 146 GTIESVNMVTNKE-TGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQE 207 (306)
Q Consensus 146 G~I~~v~v~~d~~-~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~~ 207 (306)
|.|.+++++++.. ||.++|||||+|.+.++|.+|+ .+++..+.|+.+.+.++..+
T Consensus 236 G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-------~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 236 GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-------QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-------GGTTEEETTEEEEEEECCCC
T ss_pred CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-------HhcCCEECCcEEEEEEecCC
Confidence 9999999999876 5999999999999999999998 57888899999999877653
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=6.2e-32 Score=222.69 Aligned_cols=151 Identities=17% Similarity=0.416 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccC
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQW----G-------EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEID 110 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~ 110 (306)
+.++|||+|||+++|+++|+++|++| | .|.++++. +++|||||+|.++++|.+|+..++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 46899999999999999999999999 6 77877764 3578999999999999999966999999
Q ss_pred CcEEEEeeccc-------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcC
Q psy14686 111 GRVVETKRAVP-------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDK 183 (306)
Q Consensus 111 g~~i~v~~~~~-------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~ 183 (306)
|+.+.|.++.+ .+++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+.
T Consensus 77 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-- 154 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA-- 154 (172)
T ss_dssp TEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH--
T ss_pred CceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--
Confidence 99999998754 579999999999999999999999999999999998899999999999999999999997
Q ss_pred cceeccCceEecCcccccccC
Q psy14686 184 VVVLEVDQEVINGEDHRTHGT 204 (306)
Q Consensus 184 ~~~~~~~~~~i~g~~i~v~~~ 204 (306)
.+++..+.|+.+.+.++
T Consensus 155 ----~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 155 ----GLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ----HHTTCEETTEECEEEEC
T ss_pred ----HcCCCEECCeEEEEEeC
Confidence 78999999999998765
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=4e-31 Score=222.73 Aligned_cols=155 Identities=17% Similarity=0.404 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccC
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQW----G-------EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEID 110 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~ 110 (306)
..++|||+|||+++|+++|+++|++| | .|.++++ ++++|||||+|.++++|++|++.++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 6666664 45689999999999999999966999999
Q ss_pred CcEEEEeeccc---------------------------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCce
Q psy14686 111 GRVVETKRAVP---------------------------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKR 163 (306)
Q Consensus 111 g~~i~v~~~~~---------------------------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~k 163 (306)
|+.|.|.++.+ .+++|+|||..+++++|+++|++||.|.++++++++.+|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 99999987643 468999999999999999999999999999999998899999
Q ss_pred EEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCcccc
Q psy14686 164 GFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQEA 208 (306)
Q Consensus 164 G~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~~~ 208 (306)
|||||+|.+.++|++|+. .+++..+.|+.+++.++....
T Consensus 157 g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIA------GLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEESSSSHHHHHHH------HHTTCEETTEECEEEESCCCC
T ss_pred eEEEEEECCHHHHHHHHH------HcCCCEECCEEEEEEECCCCC
Confidence 999999999999999997 789999999999999776543
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.6e-32 Score=224.94 Aligned_cols=157 Identities=21% Similarity=0.274 Sum_probs=139.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEe
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~ 117 (306)
.++...++|||+|||+++|+++|+++|++||.+.. .++.+..+|+++|||||+|.++++|.+|++.++..+.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 35567899999999999999999999999998766 33444457899999999999999999999879999999999999
Q ss_pred eccc---------cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceec
Q psy14686 118 RAVP---------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLE 188 (306)
Q Consensus 118 ~~~~---------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~ 188 (306)
++.+ ++++|+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+. .
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~------~ 155 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE------E 155 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH------H
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH------H
Confidence 8764 469999999999999999999999988766 4679999999999999999999997 7
Q ss_pred cCceEecCcccccccCcc
Q psy14686 189 VDQEVINGEDHRTHGTHQ 206 (306)
Q Consensus 189 ~~~~~i~g~~i~v~~~~~ 206 (306)
+++..+.|+.+++.++..
T Consensus 156 l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HTEEEETTEEEEEEECSS
T ss_pred hCCCEECCeEEEEEecCC
Confidence 899999999999987754
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1e-29 Score=224.07 Aligned_cols=158 Identities=22% Similarity=0.351 Sum_probs=140.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|++.+ ++|||||+|.++++|.+|+.. ++..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 4456678999999999999999999999999999999864 468999999999999999996 999999999999
Q ss_pred eeccc-cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceecc-CceEe
Q psy14686 117 KRAVP-REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEV-DQEVI 194 (306)
Q Consensus 117 ~~~~~-~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~-~~~~i 194 (306)
.++.+ .+++|+|||..+++++|+++|++||.|.++++++| .+|+++|||||+|.+.++|.+|+. .+ ++..+
T Consensus 91 ~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~------~l~~~~~~ 163 (261)
T 3sde_A 91 RFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE------RCGDGAFL 163 (261)
T ss_dssp EECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHH------HHHHSCEE
T ss_pred eecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHH------HhcCCeEE
Confidence 99866 57999999999999999999999999999999999 589999999999999999999997 55 34444
Q ss_pred c---CcccccccCcccc
Q psy14686 195 N---GEDHRTHGTHQEA 208 (306)
Q Consensus 195 ~---g~~i~v~~~~~~~ 208 (306)
. ++++.+.++....
T Consensus 164 ~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SSSSCCBCEEEECCCEE
T ss_pred ecCCCceEEEeeccccC
Confidence 3 7788887765543
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.3e-29 Score=225.43 Aligned_cols=153 Identities=20% Similarity=0.326 Sum_probs=138.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLK----AFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRV 113 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~ 113 (306)
+....++|||+|||+++|+++|+ ++|++||+|.+|++++ +|+++|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45668999999999999999977 8999999999999886 688999999999999999999977 999999999
Q ss_pred EEEeeccc------------------------------------------------------------------------
Q psy14686 114 VETKRAVP------------------------------------------------------------------------ 121 (306)
Q Consensus 114 i~v~~~~~------------------------------------------------------------------------ 121 (306)
|.|.++..
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99987543
Q ss_pred ----------------------------------------------cceeecccccccchHHHHHHhccCCCeeEEEEEe
Q psy14686 122 ----------------------------------------------REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVT 155 (306)
Q Consensus 122 ----------------------------------------------~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~ 155 (306)
+.++|+|||..+++++|+++|++||.|.++++++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 2389999999999999999999999999999986
Q ss_pred cCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEec-CcccccccCc
Q psy14686 156 NKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN-GEDHRTHGTH 205 (306)
Q Consensus 156 d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~-g~~i~v~~~~ 205 (306)
++ +|||||+|.+.++|.+|+. .+|+..+. |+.+++.+++
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~------~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARD------ALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHH------HcCCcEeCCCCEEEEEEec
Confidence 53 5899999999999999997 78999998 9999988764
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=7e-30 Score=217.19 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=130.1
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 42 SLRKLFIGGLD-YRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 42 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
++++|||+||| +++|+++|+++|++||+|.+|+++++ ++|||||+|.++++|++|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 79999999999999999999999865 378999999999999999997 999999999999875
Q ss_pred cc--------------------------------------------cceeecccccccchHHHHHHhccCCCe--eEEEE
Q psy14686 120 VP--------------------------------------------REVKVRRVTKVQIALEQMDYFGQYGTI--ESVNM 153 (306)
Q Consensus 120 ~~--------------------------------------------~~~~v~nl~~~~~e~~l~~~F~~~G~I--~~v~v 153 (306)
.. ++++|+|||..+++++|+++|++||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 31 138899999999999999999999999 89999
Q ss_pred EecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 154 VTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 154 ~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
+++. +.++|+|||+|.+.++|.+||. .+|+..+.|+.
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~------~lng~~~~g~~ 194 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLG------FLNHYQMKNPN 194 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHH------HHTTCEECCSS
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHH------HhCCCCccCCC
Confidence 8875 5667999999999999999998 88998888774
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4.8e-29 Score=215.60 Aligned_cols=151 Identities=13% Similarity=0.262 Sum_probs=136.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 40 PESLRKLFIGGLDY-RTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 40 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
....++|||+|||+ ++|+++|+++|++||+|.+|++++++ +|||||+|.++++|++|++. ++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34578999999999 99999999999999999999999865 78999999999999999985 9999999999998
Q ss_pred eccc------------------------------------------cceeecccccccchHHHHHHhccCC-CeeEEEEE
Q psy14686 118 RAVP------------------------------------------REVKVRRVTKVQIALEQMDYFGQYG-TIESVNMV 154 (306)
Q Consensus 118 ~~~~------------------------------------------~~~~v~nl~~~~~e~~l~~~F~~~G-~I~~v~v~ 154 (306)
++.+ ++++|+|||..+++++|+++|++|| .|.++++.
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 7642 3488999999999999999999999 99999996
Q ss_pred ecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEec-CcccccccCcc
Q psy14686 155 TNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN-GEDHRTHGTHQ 206 (306)
Q Consensus 155 ~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~-g~~i~v~~~~~ 206 (306)
++ ++|||||+|.+.++|.+|+. .+++..+. |+.+++.++..
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~------~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALI------DLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHH------HHTTCBSSSSCBCEEEECSS
T ss_pred EC-----CCcEEEEEECCHHHHHHHHH------HHCCCccCCCCeEEEEEecC
Confidence 53 36899999999999999997 78899898 99999987654
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=4.6e-29 Score=210.54 Aligned_cols=148 Identities=13% Similarity=0.270 Sum_probs=133.9
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecc
Q psy14686 43 LRKLFIGGLDY-RTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAV 120 (306)
Q Consensus 43 ~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~ 120 (306)
+++|||+|||+ ++|+++|+++|++||+|.+|++++++ +|||||+|.++++|.+|++. ++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 68999999999999999985 9999999999998764
Q ss_pred c------------------------------------------cceeecccccccchHHHHHHhccCC-CeeEEEEEecC
Q psy14686 121 P------------------------------------------REVKVRRVTKVQIALEQMDYFGQYG-TIESVNMVTNK 157 (306)
Q Consensus 121 ~------------------------------------------~~~~v~nl~~~~~e~~l~~~F~~~G-~I~~v~v~~d~ 157 (306)
+ +.++|+|||..+++++|+++|++|| .|.++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 2 3488999999999999999999999 9999999754
Q ss_pred CCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEec-CcccccccCcc
Q psy14686 158 ETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN-GEDHRTHGTHQ 206 (306)
Q Consensus 158 ~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~-g~~i~v~~~~~ 206 (306)
.+|+|||+|.+.++|.+|+. .+++..+. |+.+++.++..
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~------~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALI------DLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHH------HHTSSCCSSCCSCCEEEECC
T ss_pred ----CCcEEEEEeCCHHHHHHHHH------HhcCCccCCCCeEEEEeecc
Confidence 37899999999999999997 78888888 89999887643
No 21
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=9.6e-22 Score=147.45 Aligned_cols=81 Identities=22% Similarity=0.437 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
..+++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.++++|++|++. ++..+.|++|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3468999999999999999999999999999999999999999999999999999999999987 999999999999998
Q ss_pred cc
Q psy14686 120 VP 121 (306)
Q Consensus 120 ~~ 121 (306)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=6.2e-22 Score=152.64 Aligned_cols=95 Identities=21% Similarity=0.368 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
...++|||+|||+++|+++|+++|++||+|.+|+|++++ +.+||||||+|.++++|++|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999986 55899999999999999999987 999999999999887
Q ss_pred ccc---------------ceeecccccccchHH
Q psy14686 120 VPR---------------EVKVRRVTKVQIALE 137 (306)
Q Consensus 120 ~~~---------------~~~v~nl~~~~~e~~ 137 (306)
.++ ++||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 542 478999999988763
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=8.7e-22 Score=160.16 Aligned_cols=129 Identities=18% Similarity=0.260 Sum_probs=106.0
Q ss_pred EEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CC-CccCCcEE------EEe-------------eccccceeecccc
Q psy14686 72 DVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RP-HEIDGRVV------ETK-------------RAVPREVKVRRVT 130 (306)
Q Consensus 72 ~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~-~~~~g~~i------~v~-------------~~~~~~~~v~nl~ 130 (306)
+++++++. .+++|||||+|.++++|++|++. ++ ..+.|... ... .....++||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46777765 47999999999999999999976 32 22222211 111 1123579999999
Q ss_pred cccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCcccc
Q psy14686 131 KVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQEA 208 (306)
Q Consensus 131 ~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~~~ 208 (306)
..+++++|+++|++||.|.++++++|+.+|+++|||||+|.+.++|++|+. .+++..+.|+.+++.++....
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD------AMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHH------HSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHH------HhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999998899999999999999999999997 789999999999999876543
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=143.11 Aligned_cols=83 Identities=16% Similarity=0.372 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
+.+.++|||+|||+++|+++|+++|++||+|.+|+|++++.||+++|||||+|.+.++|++|++. |+..+.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999997 99999999999998
Q ss_pred cccc
Q psy14686 119 AVPR 122 (306)
Q Consensus 119 ~~~~ 122 (306)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8653
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-21 Score=143.10 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc--CCCccCCcEEEEeec
Q psy14686 43 LRKLFIGGLDYRTNDDSLKAFFEQWG-EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN--RPHEIDGRVVETKRA 119 (306)
Q Consensus 43 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~--~~~~~~g~~i~v~~~ 119 (306)
+++|||+|||+++||++|+++|++|| +|.+|++++++.+|++||||||+|.++++|++|++. ++..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999999999999999999999999999999986 566799999999998
Q ss_pred cccc
Q psy14686 120 VPRE 123 (306)
Q Consensus 120 ~~~~ 123 (306)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7754
No 26
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=3.1e-20 Score=135.62 Aligned_cols=82 Identities=40% Similarity=0.842 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEe
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~ 117 (306)
.++...++|||+|||+++|+++|+++|++||+|.++++++++.+|+++|||||+|.++++|++|++.++..+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999989999999999999999999999988889999999998
Q ss_pred ec
Q psy14686 118 RA 119 (306)
Q Consensus 118 ~~ 119 (306)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=140.36 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC--EEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCC----ccCC
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGE--IVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPH----EIDG 111 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~----~~~g 111 (306)
......||||+|||+++|+++|+++|++||. |.+|++++|+.+|++||||||+|.++++|++|++. ++. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4456789999999999999999999999995 67999999999999999999999999999999998 664 5899
Q ss_pred cEEEEeeccc
Q psy14686 112 RVVETKRAVP 121 (306)
Q Consensus 112 ~~i~v~~~~~ 121 (306)
|+|.|.+++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 28
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.3e-19 Score=147.50 Aligned_cols=114 Identities=21% Similarity=0.420 Sum_probs=102.5
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
+.++.|++.++|..+.|+++.+....... .......++|||+|||+++|+++|+++|++||.|.++.++.++.+|
T Consensus 52 ~~a~~A~~~l~~~~~~g~~i~v~~~~~~~-----~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 126 (166)
T 3md3_A 52 HDANIALQTLNGKQIENNIVKINWAFQSQ-----QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG 126 (166)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCC-----CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC
T ss_pred HHHHHHHHHcCCCccCCCeeEEEEcCCCC-----CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 46788999999999999999997755432 2345567899999999999999999999999999999999998899
Q ss_pred CcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccc
Q psy14686 83 RSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVP 121 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~ 121 (306)
+++|||||+|.++++|.+|++. ++..+.|+.|.|.++.+
T Consensus 127 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 127 SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999997 99999999999998853
No 29
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.3e-20 Score=136.41 Aligned_cols=86 Identities=37% Similarity=0.735 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEe
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~ 117 (306)
.+....++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.++..+.|+.|.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 44566799999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eccccc
Q psy14686 118 RAVPRE 123 (306)
Q Consensus 118 ~~~~~~ 123 (306)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 987754
No 30
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=9.4e-20 Score=138.78 Aligned_cols=88 Identities=30% Similarity=0.587 Sum_probs=81.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
.+..+...++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.++++|++|++. ++..+.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345566789999999999999999999999999999999999988999999999999999999999986 9999999999
Q ss_pred EEeeccccc
Q psy14686 115 ETKRAVPRE 123 (306)
Q Consensus 115 ~v~~~~~~~ 123 (306)
.|.++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999987753
No 31
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=3.9e-20 Score=142.35 Aligned_cols=104 Identities=17% Similarity=0.303 Sum_probs=94.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
+...++|||+|||+++|+++|+++|++||.|.+|+++.+ +.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999875 45699999999999999999996 99999999999999
Q ss_pred ccccceeecccccccchHHHHHHhccCCC
Q psy14686 119 AVPREVKVRRVTKVQIALEQMDYFGQYGT 147 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~~~F~~~G~ 147 (306)
+.++... .+++....+++++++|++||.
T Consensus 82 a~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF-QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT-TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh-hhhhHhHhHHHHHHHHHHhCC
Confidence 9875433 788888999999999999984
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=132.44 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecc
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAV 120 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~ 120 (306)
+.++|||+|||+++|+++|+++|++||+|.+++++.++.+|+++|||||+|.+.++|++|++. ++..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999997 9999999999999987
Q ss_pred cc
Q psy14686 121 PR 122 (306)
Q Consensus 121 ~~ 122 (306)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 33
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-20 Score=138.50 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
....++|||+|||+++|+++|+++|++||+|.+|++++++. |+++|||||+|.++++|.+|+..++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44578999999999999999999999999999999999986 99999999999999999999999999999999999986
Q ss_pred cc
Q psy14686 120 VP 121 (306)
Q Consensus 120 ~~ 121 (306)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=136.12 Aligned_cols=87 Identities=21% Similarity=0.390 Sum_probs=81.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
..+....++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.++++|++|++. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 44566789999999999999999999999999999999999988999999999999999999999996 99999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99987653
No 35
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.7e-19 Score=130.30 Aligned_cols=79 Identities=27% Similarity=0.519 Sum_probs=76.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecccc
Q psy14686 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPR 122 (306)
Q Consensus 44 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~ 122 (306)
.+|||+|||+++|+++|+++|++||+|.++++++++.+|+++|||||+|.++++|++|++. ++..+.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999999988999999999999999999999997 999999999999998765
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=133.64 Aligned_cols=85 Identities=28% Similarity=0.485 Sum_probs=79.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
...+...++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.++++|.+|++. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 45566789999999999999999999999999999999999998999999999999999999999997 99999999999
Q ss_pred Eeeccc
Q psy14686 116 TKRAVP 121 (306)
Q Consensus 116 v~~~~~ 121 (306)
|.++.+
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 998764
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=136.52 Aligned_cols=88 Identities=25% Similarity=0.431 Sum_probs=81.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
++.+....++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.++++|++|++. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 345566789999999999999999999999999999999999998999999999999999999999997 9999999999
Q ss_pred EEeeccccc
Q psy14686 115 ETKRAVPRE 123 (306)
Q Consensus 115 ~v~~~~~~~ 123 (306)
.|.++.++.
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 999987754
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.4e-19 Score=131.38 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
+.+.++|||+|||+++|+++|+++|++||+|.++++++++.+|+++|||||+|.++++|++|++. ++..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999977 99999999999988
Q ss_pred cc
Q psy14686 119 AV 120 (306)
Q Consensus 119 ~~ 120 (306)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 39
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.80 E-value=2.9e-19 Score=146.55 Aligned_cols=109 Identities=23% Similarity=0.397 Sum_probs=98.3
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
+.+++|+ .++|..+.|+++.+...... ..+...++|||+|||+++|+++|+++|++||+|.++++++++.+|
T Consensus 62 ~~A~~A~-~~~~~~~~g~~i~v~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 133 (172)
T 2g4b_A 62 DETTQAM-AFDGIIFQGQSLKIRRPHDY-------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 133 (172)
T ss_dssp HHHHHHG-GGTTCEETTEECEEECCSSC-------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC
T ss_pred HHHHHHH-HhCCcEecCceeeecCCccc-------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 5678899 89999999999998764432 233457899999999999999999999999999999999998899
Q ss_pred CcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 83 RSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
+++|||||+|.++++|.+|++. ++..+.|+.|.|.++
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 134 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp SEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999997 999999999999986
No 40
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=3.4e-19 Score=149.21 Aligned_cols=119 Identities=24% Similarity=0.496 Sum_probs=98.1
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
+.+++|++. ++..+.|+.+.+.......... .+......++|||+|||+++|+++|+++|++||+|.+++++.++.+|
T Consensus 66 ~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~-~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g 143 (196)
T 1l3k_A 66 EEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQ-RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143 (196)
T ss_dssp HHHHHHHHT-CSCEETTEECEEEECCC------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTC
T ss_pred HHHHHHHhc-CCCEECCEEeeeecccCccccc-ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC
Confidence 467889986 8999999999998765543222 22334466899999999999999999999999999999999998899
Q ss_pred CcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeeccccc
Q psy14686 83 RSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~~~~~ 123 (306)
+++|||||+|.+.++|.+|+..++..+.|+.|.|.++.++.
T Consensus 144 ~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp CEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC---
T ss_pred CccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChh
Confidence 99999999999999999999999999999999999987764
No 41
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=1e-19 Score=138.78 Aligned_cols=87 Identities=41% Similarity=0.814 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
..++...++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++..+..+.|+.|.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999779999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9987653
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=2e-19 Score=138.33 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=80.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
+......++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556778999999999999999999999999999999999998999999999999999999999977 99999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 99987654
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=3.4e-19 Score=137.06 Aligned_cols=88 Identities=26% Similarity=0.470 Sum_probs=81.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
+..+....++|||+|||+++|+++|+++|++||.|.+|++++++.+|+++|||||+|.++++|++|++. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345667789999999999999999999999999999999999988999999999999999999999986 9999999999
Q ss_pred EEeeccccc
Q psy14686 115 ETKRAVPRE 123 (306)
Q Consensus 115 ~v~~~~~~~ 123 (306)
.|.++.++.
T Consensus 88 ~V~~a~~~~ 96 (115)
T 2dgo_A 88 RTNWATRKP 96 (115)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999987653
No 44
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=134.49 Aligned_cols=86 Identities=20% Similarity=0.451 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
...+.++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.++++|++|++. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999966 9999999999999
Q ss_pred eccccce
Q psy14686 118 RAVPREV 124 (306)
Q Consensus 118 ~~~~~~~ 124 (306)
++.++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987644
No 45
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=135.76 Aligned_cols=85 Identities=19% Similarity=0.359 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999997 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++.++
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 998764
No 46
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=132.94 Aligned_cols=83 Identities=34% Similarity=0.652 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
...++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.++++|++|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4578999999999999999999999999999999999998999999999999999999999996 999999999999998
Q ss_pred cccc
Q psy14686 120 VPRE 123 (306)
Q Consensus 120 ~~~~ 123 (306)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7653
No 47
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=133.71 Aligned_cols=84 Identities=18% Similarity=0.301 Sum_probs=78.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEE--------EEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCC
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVD--------VVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPH 107 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~ 107 (306)
+..+...++|||+|||+++|+++|+++|++||.|.+ ++++.++.+|+++|||||+|.+.++|++|++. ++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445667899999999999999999999999999999 99999988999999999999999999999986 999
Q ss_pred ccCCcEEEEeecc
Q psy14686 108 EIDGRVVETKRAV 120 (306)
Q Consensus 108 ~~~g~~i~v~~~~ 120 (306)
.+.|+.|+|.+++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999998863
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=136.30 Aligned_cols=86 Identities=30% Similarity=0.556 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
+.+....++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.++++|++|++. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999996 99999999999
Q ss_pred Eeecccc
Q psy14686 116 TKRAVPR 122 (306)
Q Consensus 116 v~~~~~~ 122 (306)
|.++.+.
T Consensus 87 V~~a~~~ 93 (103)
T 2dnm_A 87 VQVARYG 93 (103)
T ss_dssp EEECSSC
T ss_pred EEECCcC
Confidence 9998764
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=132.93 Aligned_cols=85 Identities=16% Similarity=0.384 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|+++.++ +|+++|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999998 899999999999999999999987 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987653
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.1e-19 Score=133.86 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEe
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~ 117 (306)
..+...++|||+|||+++|+++|+++|++|| |.+|++++++.+|+++|||||+|.++++|++|++.++..+.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 4455678999999999999999999999997 999999999989999999999999999999999669999999999999
Q ss_pred eccccc
Q psy14686 118 RAVPRE 123 (306)
Q Consensus 118 ~~~~~~ 123 (306)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 987654
No 51
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.6e-20 Score=139.08 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCC-cE
Q psy14686 42 SLRKLFIGGLDY------RTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDG-RV 113 (306)
Q Consensus 42 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g-~~ 113 (306)
..++|||+|||+ ++++++|+++|++||+|.+|+|++++.||+++|||||+|.++++|++|++. ++..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 999999999999999999999999999999999999999999999999987 9999999 99
Q ss_pred EEEeeccccc
Q psy14686 114 VETKRAVPRE 123 (306)
Q Consensus 114 i~v~~~~~~~ 123 (306)
|.|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999987754
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=136.60 Aligned_cols=87 Identities=23% Similarity=0.463 Sum_probs=80.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-C------CCcc
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-R------PHEI 109 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~------~~~~ 109 (306)
+.+....++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++. + +..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999997 7 9999
Q ss_pred CCcEEEEeeccccc
Q psy14686 110 DGRVVETKRAVPRE 123 (306)
Q Consensus 110 ~g~~i~v~~~~~~~ 123 (306)
.|+.|.|.++.++.
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 99999999987653
No 53
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.80 E-value=5.1e-19 Score=148.37 Aligned_cols=120 Identities=23% Similarity=0.368 Sum_probs=103.5
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccC-------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDS-------------QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGE 69 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~-------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 69 (306)
+.+++|+ .++|..+.|+++.+..+........ +...+...++|||+|||+++|+++|+++|++||+
T Consensus 62 ~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 140 (198)
T 2yh0_A 62 DETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 140 (198)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC
T ss_pred HHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 4678899 8999999999999987654422111 1122356799999999999999999999999999
Q ss_pred EEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccccc
Q psy14686 70 IVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPRE 123 (306)
Q Consensus 70 i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~~ 123 (306)
|.++++++++.+|+++|||||+|.++++|.+|++. ++..+.|+.|.|.++.++.
T Consensus 141 v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 141 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999988999999999999999999999997 9999999999999987653
No 54
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=136.46 Aligned_cols=87 Identities=43% Similarity=0.903 Sum_probs=81.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
..++...++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.++++|++|++.++..+.|+.|.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V 89 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDP 89 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBC
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 34566789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 9987764
No 55
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.7e-19 Score=133.10 Aligned_cols=82 Identities=20% Similarity=0.480 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccc
Q psy14686 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVP 121 (306)
Q Consensus 43 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~ 121 (306)
.++|||+|||+++|+++|+++|++||+|.+++++.++.+|+++|||||+|.+.++|++|++. ++..+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999998999999999999999999999987 99999999999999987
Q ss_pred cce
Q psy14686 122 REV 124 (306)
Q Consensus 122 ~~~ 124 (306)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 643
No 56
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=6.2e-20 Score=135.02 Aligned_cols=79 Identities=19% Similarity=0.366 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecc
Q psy14686 44 RKLFIGGLDYRTNDDSLKAFFEQWG--EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAV 120 (306)
Q Consensus 44 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~ 120 (306)
.+|||+|||+++|+++|+++|++|| +|.+++++.++.+|+++|||||+|.+.++|++|++. ++..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 999999999999999999999999999999999976 9999999999999887
Q ss_pred cc
Q psy14686 121 PR 122 (306)
Q Consensus 121 ~~ 122 (306)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 57
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=132.18 Aligned_cols=83 Identities=23% Similarity=0.500 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+...++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4456788999999999999999999999999999999999998899999999999999999999976 999999999999
Q ss_pred eecc
Q psy14686 117 KRAV 120 (306)
Q Consensus 117 ~~~~ 120 (306)
.+++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 8863
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=4.4e-19 Score=129.90 Aligned_cols=80 Identities=21% Similarity=0.491 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeecccc
Q psy14686 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPR 122 (306)
Q Consensus 43 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~~~~ 122 (306)
.++|||+|||+++|+++|+++|++||+|.+++++.++.+|+++|||||+|.++++|++|+..++..+.|+.|.|.++.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 57999999999999999999999999999999999988999999999999999999999955999999999999998764
No 59
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=1.1e-19 Score=146.54 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=96.9
Q ss_pred hHHHHHHHhc-CCcccCCeeeccccccccccc---------cCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEE
Q psy14686 3 GVMQYIFKLV-PGLEVAGTVVPLAMIINKAME---------DSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVD 72 (306)
Q Consensus 3 ~~~~~A~~~~-~g~~~~g~~~~v~~~~~~~~~---------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 72 (306)
..+++|++++ +|..+.| ++.+..+...... ..........++|||+|||+++|+++|+++|++||+|.+
T Consensus 24 ~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~ 102 (150)
T 2i2y_A 24 ATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRS 102 (150)
T ss_dssp HHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEE
T ss_pred HHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE
Confidence 4567899999 9999999 8888765543211 122344567899999999999999999999999999999
Q ss_pred EEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccccc
Q psy14686 73 VVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPRE 123 (306)
Q Consensus 73 v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~~ 123 (306)
|+++++ ++|||||+|.+.++|.+|++. ++..+.|++|.|.++.++.
T Consensus 103 v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 103 VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999876 578999999999999999996 9999999999999987653
No 60
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.7e-19 Score=132.35 Aligned_cols=86 Identities=33% Similarity=0.555 Sum_probs=79.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
.......++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|++|++. +..+.|+.|.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEE
Confidence 34456678999999999999999999999999999999999998999999999999999999999994 77899999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9987754
No 61
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=9.8e-19 Score=142.71 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=98.8
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
+.++.|++.++|..+.|+++.+..+.+. ......++|||+|||+++|+++|+++|++||+|.++++++++.+|
T Consensus 56 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 128 (168)
T 1b7f_A 56 MDSQRAIKVLNGITVRNKRLKVSYARPG-------GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG 128 (168)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC-------SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC
T ss_pred HHHHHHHHhcCCCEeCCcEEEEEecCCC-------cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC
Confidence 5678999999999999999998775542 234557899999999999999999999999999999999998899
Q ss_pred CcceEEEEEecChHHHHHHHHc-CCCccCC--cEEEEeec
Q psy14686 83 RSRGFGFITYSESKMVDEAMSN-RPHEIDG--RVVETKRA 119 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~-~~~~~~g--~~i~v~~~ 119 (306)
+++|||||+|.+.++|.+|++. ++..+.| ++|.|.++
T Consensus 129 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 129 RPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999997 9999988 99998864
No 62
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=8.1e-19 Score=132.63 Aligned_cols=85 Identities=22% Similarity=0.382 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCC---cE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDG---RV 113 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g---~~ 113 (306)
......++|||+|||+++|+++|+++|++||+|.+|+++.++ +|+++|||||+|.+.++|++|++. ++..+.| +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344568999999999999999999999999999999999998 799999999999999999999987 9999988 99
Q ss_pred EEEeeccccc
Q psy14686 114 VETKRAVPRE 123 (306)
Q Consensus 114 i~v~~~~~~~ 123 (306)
|.|.++.++.
T Consensus 89 l~V~~a~~~~ 98 (105)
T 2dnh_A 89 LVVKFADTDK 98 (105)
T ss_dssp CEEEESCSSC
T ss_pred EEEEECccCc
Confidence 9999987654
No 63
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=133.98 Aligned_cols=86 Identities=38% Similarity=0.682 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
....+.++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.++++|.+|++. ++..+.|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3455678999999999999999999999999999999999998999999999999999999999977 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9987654
No 64
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=3.3e-19 Score=140.06 Aligned_cols=88 Identities=27% Similarity=0.494 Sum_probs=81.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
...++.+.++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.++++|++|++. ++..+.|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345566789999999999999999999999999999999999998999999999999999999999997 9999999999
Q ss_pred EEeeccccc
Q psy14686 115 ETKRAVPRE 123 (306)
Q Consensus 115 ~v~~~~~~~ 123 (306)
.|.++.++.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999987653
No 65
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=135.15 Aligned_cols=87 Identities=29% Similarity=0.519 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999999988999999999999999999999987 999999999999
Q ss_pred eeccccce
Q psy14686 117 KRAVPREV 124 (306)
Q Consensus 117 ~~~~~~~~ 124 (306)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99877643
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=133.16 Aligned_cols=83 Identities=25% Similarity=0.470 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEE-EEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDV-VVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
.+.++|||+|||+++|+++|+++|++||+|.++ ++++++.+|+++|||||+|.++++|++|++. ++..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999996 99999999999999
Q ss_pred ccccc
Q psy14686 119 AVPRE 123 (306)
Q Consensus 119 ~~~~~ 123 (306)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87654
No 67
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=132.89 Aligned_cols=84 Identities=15% Similarity=0.354 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEE-EEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcE---
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIV-DVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRV--- 113 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~--- 113 (306)
.....++|||+|||+++|+++|+++|++||+|. ++++++++.+|+++|||||+|.++++|++|++. ++..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 999999998999999999999999999999997 999999999
Q ss_pred -EEEeecccc
Q psy14686 114 -VETKRAVPR 122 (306)
Q Consensus 114 -i~v~~~~~~ 122 (306)
|+|.++.+.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999988764
No 68
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.5e-19 Score=128.22 Aligned_cols=75 Identities=40% Similarity=0.772 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 45 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
+|||+|||+++|+++|+++|++||+|.+++++.++.+|+++|||||+|.++++|++|++.++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999998999999999999999999999999999999999999864
No 69
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=133.60 Aligned_cols=85 Identities=16% Similarity=0.337 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEE-EEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVD-VVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||.|.+ |+|+.+ .+|+++|||||+|.++++|++|++.++..+.||.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34456789999999999999999999999999998 899988 5899999999999999999999999999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9887654
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=4.3e-19 Score=135.39 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
....+.++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999996 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++.++
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 998764
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.4e-19 Score=137.04 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=78.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
.+.+....++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++. ++..+.|+.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344566789999999999999999999999999999999999988999999999999999999999997 9999999999
Q ss_pred EEeecc
Q psy14686 115 ETKRAV 120 (306)
Q Consensus 115 ~v~~~~ 120 (306)
+|.+++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 998763
No 72
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=3.4e-19 Score=134.94 Aligned_cols=86 Identities=29% Similarity=0.472 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCcc---CCcE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEI---DGRV 113 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~---~g~~ 113 (306)
..+...++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|.+|++. ++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4556789999999999999999999999999999999999998999999999999999999999987 88887 8899
Q ss_pred EEEeeccccc
Q psy14686 114 VETKRAVPRE 123 (306)
Q Consensus 114 i~v~~~~~~~ 123 (306)
|.|.++.++.
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999987654
No 73
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=131.93 Aligned_cols=86 Identities=23% Similarity=0.402 Sum_probs=79.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
...+.+.++|||+|||+++|+++|+++|++||+|.+|+++.+ +|+++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345567899999999999999999999999999999999998 799999999999999999999997 99999999999
Q ss_pred Eeeccccce
Q psy14686 116 TKRAVPREV 124 (306)
Q Consensus 116 v~~~~~~~~ 124 (306)
|.++.++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999877543
No 74
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=133.77 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEe
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~ 117 (306)
..+...++|||+|||+++|++||+++|++||.+ +|+|++++ +|+++|||||+|.++++|++||+.++..+.||.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 445667899999999999999999999999954 99999998 8999999999999999999999889999999999999
Q ss_pred ecccc
Q psy14686 118 RAVPR 122 (306)
Q Consensus 118 ~~~~~ 122 (306)
.+.+.
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 87654
No 75
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=4.7e-19 Score=143.91 Aligned_cols=84 Identities=32% Similarity=0.584 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
.....++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999987 9999999999999
Q ss_pred ecccc
Q psy14686 118 RAVPR 122 (306)
Q Consensus 118 ~~~~~ 122 (306)
++.++
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 98765
No 76
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=133.40 Aligned_cols=87 Identities=20% Similarity=0.418 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeC-CCCCCcceEEEEEecChHHHHHHHHc--CCCccCCcE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKD-PVTKRSRGFGFITYSESKMVDEAMSN--RPHEIDGRV 113 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~kg~afV~f~~~~~a~~Al~~--~~~~~~g~~ 113 (306)
+......++|||+|||+++|+++|+++|++||+|.+|+++.+ +.+|+++|||||+|.+.++|++|++. ++..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567899999999999999999999999999999999998 78899999999999999999999987 799999999
Q ss_pred EEEeeccccc
Q psy14686 114 VETKRAVPRE 123 (306)
Q Consensus 114 i~v~~~~~~~ 123 (306)
|.|.++.++.
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999997754
No 77
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=130.60 Aligned_cols=82 Identities=24% Similarity=0.465 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+...++|||+|||+++|+++|+++|++||+|.+|+++.++. |+++|||||+|.++++|.+|++. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 4455678999999999999999999999999999999999984 99999999999999999999996 999999999999
Q ss_pred eecc
Q psy14686 117 KRAV 120 (306)
Q Consensus 117 ~~~~ 120 (306)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9875
No 78
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1.3e-19 Score=143.58 Aligned_cols=110 Identities=26% Similarity=0.411 Sum_probs=81.8
Q ss_pred HHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCc
Q psy14686 5 MQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRS 84 (306)
Q Consensus 5 ~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~ 84 (306)
...|++.++|....|..-. ....++.++...++|||+|||+++|+++|+++|++||+|.+|+++.++.+|++
T Consensus 17 ~~~a~~~~~g~~~~g~~~~--------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~ 88 (135)
T 2lea_A 17 RGSHMASMTGGQQMGRGSM--------SYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKES 88 (135)
T ss_dssp ------------------C--------CSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSC
T ss_pred hhhhhhhccCCCCCCCCCC--------CcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCcc
Confidence 4568888888766655311 12223455667899999999999999999999999999999999999889999
Q ss_pred ceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecccc
Q psy14686 85 RGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPR 122 (306)
Q Consensus 85 kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~ 122 (306)
+|||||+|.+.++|++|++. ++..+.|+.|.|.++.+.
T Consensus 89 ~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 89 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999999987 999999999999998764
No 79
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=5.3e-20 Score=143.50 Aligned_cols=111 Identities=18% Similarity=0.334 Sum_probs=88.4
Q ss_pred HHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceE
Q psy14686 8 IFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGF 87 (306)
Q Consensus 8 A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~ 87 (306)
|++.++|..+.|........... .........++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++||
T Consensus 5 ~~~~~~g~~~~g~~~~~~~~~~~----~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~ 80 (124)
T 2jwn_A 5 CMQTTHSKMTAGAYTEGPPQPLS----AEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY 80 (124)
T ss_dssp CSCCCCCCCCCSCSCCCSCCSCC----HHHHHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEE
T ss_pred hhhhcCCcccCCccCCCCCCCcc----ccccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccE
Confidence 45567777776653222111110 01112234689999999999999999999999999999999999889999999
Q ss_pred EEEEecChHHHHHHHHcCCCccCCcEEEEeecccc
Q psy14686 88 GFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPR 122 (306)
Q Consensus 88 afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~~~~ 122 (306)
|||+|.+.++|++|++.++..+.|+.|.|.++.+.
T Consensus 81 afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 81 AYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp EEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred EEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 99999999999999966999999999999998754
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-19 Score=133.41 Aligned_cols=85 Identities=21% Similarity=0.425 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCC-CCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVT-KRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++|| |.+|+++.++.+ |+++|||||+|.++++|++|+..++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEE
Confidence 3345678999999999999999999999999 999999999887 99999999999999999999955999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 89 ~~a~~~~ 95 (104)
T 1wi8_A 89 DVADQAQ 95 (104)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9987654
No 81
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-19 Score=137.99 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCE-EEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEI-VDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
..+...++|||+|||+++|+++|+++|++||.| .+|+|+.++ +|+++|||||+|.+.++|++||+.++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 445667999999999999999999999999999 899999998 999999999999999999999999999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++.++
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998764
No 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-19 Score=138.10 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
....++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|++|+..++..+.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34568999999999999999999999999999999999998899999999999999999999955999999999999998
Q ss_pred ccc
Q psy14686 120 VPR 122 (306)
Q Consensus 120 ~~~ 122 (306)
.++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
No 83
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=131.84 Aligned_cols=83 Identities=27% Similarity=0.503 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCC---CCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPV---TKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
.+.++|||+|||+++|+++|+++|++||+|.+|+++.++. +++++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999876 669999999999999999999997 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987653
No 84
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-19 Score=136.16 Aligned_cols=83 Identities=29% Similarity=0.590 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
....++|||+|||+++|+++|+++|++||+|.+++++.++.+|+++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999986 99999999999999
Q ss_pred cccc
Q psy14686 119 AVPR 122 (306)
Q Consensus 119 ~~~~ 122 (306)
+.++
T Consensus 85 a~~~ 88 (104)
T 1p1t_A 85 AASE 88 (104)
T ss_dssp TTCT
T ss_pred CCCc
Confidence 8764
No 85
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.4e-18 Score=141.36 Aligned_cols=110 Identities=22% Similarity=0.377 Sum_probs=97.3
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
+.++.|++.++|..+.|+++.+....+.. .....++|||+|||+++|+++|+++|++||+|.+++++.++.+|
T Consensus 55 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 127 (167)
T 1fxl_A 55 KDAEKAINTLNGLRLQTKTIKVSYARPSS-------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 127 (167)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCC-------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred HHHHHHHHHcCCCccCCceEEEEecCCCc-------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC
Confidence 56889999999999999999997755432 23456899999999999999999999999999999999998899
Q ss_pred CcceEEEEEecChHHHHHHHHc-CCCccCCcE--EEEeec
Q psy14686 83 RSRGFGFITYSESKMVDEAMSN-RPHEIDGRV--VETKRA 119 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~--i~v~~~ 119 (306)
+++|||||+|.+.++|.+|++. ++..+.|+. |.|.++
T Consensus 128 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 128 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999999997 999999975 777654
No 86
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=4.8e-19 Score=150.57 Aligned_cols=120 Identities=20% Similarity=0.459 Sum_probs=102.4
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccC----CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDS----QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKD 78 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 78 (306)
+.+++|++.++|..+.|+.+.|....+...... ........++|||+|||.++|+++|+++|++||+|.+++++++
T Consensus 81 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 160 (216)
T 2qfj_A 81 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD 160 (216)
T ss_dssp HHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC
T ss_pred HHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec
Confidence 468899999999999999999876554332111 0112345689999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecccc
Q psy14686 79 PVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPR 122 (306)
Q Consensus 79 ~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~ 122 (306)
+.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.++
T Consensus 161 ~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 161 PTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred CCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 88999999999999999999999997 999999999999998765
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=138.25 Aligned_cols=85 Identities=61% Similarity=1.090 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
+...++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|++|++.++..+.|+.|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred cccce
Q psy14686 120 VPREV 124 (306)
Q Consensus 120 ~~~~~ 124 (306)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87643
No 88
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.7e-19 Score=132.23 Aligned_cols=85 Identities=22% Similarity=0.408 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCc-cCCcEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQ-WGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHE-IDGRVV 114 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~-~~g~~i 114 (306)
.++...++|||+|||+++|+++|+++|++ ||+|.+|+++.++ +|+++|||||+|.+.++|.+|++. ++.. +.|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34556789999999999999999999999 9999999999998 999999999999999999999996 9988 999999
Q ss_pred EEeeccccc
Q psy14686 115 ETKRAVPRE 123 (306)
Q Consensus 115 ~v~~~~~~~ 123 (306)
.|.++.++.
T Consensus 83 ~v~~a~~~~ 91 (104)
T 2dhg_A 83 RLSVAIPKA 91 (104)
T ss_dssp CCCBCCCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 89
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=134.06 Aligned_cols=85 Identities=36% Similarity=0.696 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
+......++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.++++|++|++. ++ .+.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999 65 89999999
Q ss_pred Eeecccc
Q psy14686 116 TKRAVPR 122 (306)
Q Consensus 116 v~~~~~~ 122 (306)
|.++.+.
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9998653
No 90
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=142.85 Aligned_cols=81 Identities=15% Similarity=0.363 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWG--EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
..++|||+|||+++|+++|+++|++|| +|.+|+++.|+.+|+++|||||+|.+.++|++||+. ++..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999 99999999999999
Q ss_pred cccc
Q psy14686 119 AVPR 122 (306)
Q Consensus 119 ~~~~ 122 (306)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8764
No 91
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=1.9e-19 Score=127.55 Aligned_cols=75 Identities=32% Similarity=0.592 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 45 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
+|||+|||+++|+++|+++|++||+|.+++++.++.+|+++|||||+|.++++|++|++.++..+.|+.+.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 689999999999999999999999999999999998999999999999999999999999999999999988764
No 92
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.1e-19 Score=134.47 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEE--------EEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCc
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIV--------DVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHE 108 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~ 108 (306)
.+....++|||+|||+++|+++|+++|++||.|. .|+++.++.+|+++|||||+|.++++|++|++. ++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4556789999999999999999999999999999 699999988999999999999999999999997 9999
Q ss_pred cCCcEEEEeeccccc
Q psy14686 109 IDGRVVETKRAVPRE 123 (306)
Q Consensus 109 ~~g~~i~v~~~~~~~ 123 (306)
+.|+.|.|.++.++.
T Consensus 90 ~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGSKLKVSLARKKP 104 (113)
T ss_dssp ETTEECEEECSSCCC
T ss_pred cCCCEEEEEECCCCC
Confidence 999999999987654
No 93
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=137.87 Aligned_cols=86 Identities=24% Similarity=0.497 Sum_probs=80.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
.++...++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456679999999999999999999999999999999999998999999999999999999999997 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9987654
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-19 Score=134.10 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=74.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCC-CCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDP-VTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~ 115 (306)
+......++|||+|||+++|+++|+++|++|| |.+|+++.++ .+|+++|||||+|.+.++|.+|+..++..+.|+.|.
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~ 91 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR 91 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence 34456789999999999999999999999999 9999999998 589999999999999999999996699999999999
Q ss_pred Eeecccc
Q psy14686 116 TKRAVPR 122 (306)
Q Consensus 116 v~~~~~~ 122 (306)
|.++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998765
No 95
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=3e-19 Score=143.98 Aligned_cols=114 Identities=25% Similarity=0.307 Sum_probs=101.9
Q ss_pred CCcceEEEEEecChHHHHHHHHc--CCCccCCcEEEEeeccc-----------------------cceeecccccccchH
Q psy14686 82 KRSRGFGFITYSESKMVDEAMSN--RPHEIDGRVVETKRAVP-----------------------REVKVRRVTKVQIAL 136 (306)
Q Consensus 82 g~~kg~afV~f~~~~~a~~Al~~--~~~~~~g~~i~v~~~~~-----------------------~~~~v~nl~~~~~e~ 136 (306)
.+.+|+++|+|.+.++|++|++. ++..+.| .+.+.++.. +++||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 46789999999999999999976 7889999 888877543 469999999999999
Q ss_pred HHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCccc
Q psy14686 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQE 207 (306)
Q Consensus 137 ~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~~ 207 (306)
+|+++|++||.|.+++++++ ++|||||+|.+.++|++|+. .+++..+.|+.+++.++...
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVR------ELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHH------HHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHH------HcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999875 68999999999999999997 78889999999999876543
No 96
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=127.23 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEe
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~ 117 (306)
..+...++|||+|||+++|+++|+++|++| .|.+|+++++ .+|+++|||||+|.++++|++|++.++..+.|+.|.|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 345567899999999999999999999999 9999999999 58999999999999999999999999999999999999
Q ss_pred ecccc
Q psy14686 118 RAVPR 122 (306)
Q Consensus 118 ~~~~~ 122 (306)
++.++
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98765
No 97
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=134.45 Aligned_cols=83 Identities=35% Similarity=0.626 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
....++|||+|||+++|+++|+++|++||+|.+|.++.++ +|+++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999998 899999999999999999999987 99999999999999
Q ss_pred ccccc
Q psy14686 119 AVPRE 123 (306)
Q Consensus 119 ~~~~~ 123 (306)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87643
No 98
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.7e-19 Score=131.40 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||.|.++.++.++.+|+++|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3445678999999999999999999999999999998998888999999999999999999999977 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++..+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 988654
No 99
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-19 Score=126.56 Aligned_cols=76 Identities=43% Similarity=0.900 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 44 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
++|||+|||+++|+++|+++|++||+|.++++++++.+|+++|||||+|.++++|++|++..+..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999998999999999999999999999999449999999999876
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-19 Score=130.14 Aligned_cols=80 Identities=20% Similarity=0.470 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
.+.++|||+|||+++|+++|+++|++||+|.+++++.++.+|+++|||||+|.++++|++|++. ++..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4578999999999999999999999999999999999988999999999999999999999997 999999999888765
Q ss_pred c
Q psy14686 120 V 120 (306)
Q Consensus 120 ~ 120 (306)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=131.74 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc---CCCccCCcEEE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN---RPHEIDGRVVE 115 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~---~~~~~~g~~i~ 115 (306)
.+.+.++|||+|||+++||++|+++|++||+|.+|+++++ ||||||+|.++++|++|++. ++..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4556789999999999999999999999999999999864 68999999999999999995 35889999999
Q ss_pred Eeecccccee
Q psy14686 116 TKRAVPREVK 125 (306)
Q Consensus 116 v~~~~~~~~~ 125 (306)
|.++.++.+.
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876544
No 102
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.8e-18 Score=133.72 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=80.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|+++.++ +|+++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 445677899999999999999999999999999999999998 899999999999999999999996 999999999999
Q ss_pred eecccccee
Q psy14686 117 KRAVPREVK 125 (306)
Q Consensus 117 ~~~~~~~~~ 125 (306)
.++.+....
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 998775443
No 103
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=127.56 Aligned_cols=81 Identities=17% Similarity=0.413 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCC-cceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKR-SRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
..++|||+|||+++|+++|+++|++||+|.+++++.++.++. ++|||||+|.++++|++|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999887666 999999999999999999997 999999999999988
Q ss_pred ccc
Q psy14686 120 VPR 122 (306)
Q Consensus 120 ~~~ 122 (306)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 104
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.6e-18 Score=130.31 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=77.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|+++.++ +|+++|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445668999999999999999999999999999999999998 999999999999999999999997 999999999999
Q ss_pred eecc
Q psy14686 117 KRAV 120 (306)
Q Consensus 117 ~~~~ 120 (306)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 105
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=140.56 Aligned_cols=87 Identities=22% Similarity=0.327 Sum_probs=79.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEE--EEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCC----c
Q psy14686 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVD--VVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPH----E 108 (306)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~----~ 108 (306)
++......++|||+|||+++|+++|+++|++||+|.. |+|++++.+|++||||||+|.+. +|.+|+.. ++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445567889999999999999999999999999976 99999999999999999999999 99999998 998 9
Q ss_pred cCCcEEEEeeccccc
Q psy14686 109 IDGRVVETKRAVPRE 123 (306)
Q Consensus 109 ~~g~~i~v~~~~~~~ 123 (306)
+.|+.|.|.++.++.
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999987653
No 106
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.4e-18 Score=126.76 Aligned_cols=83 Identities=14% Similarity=0.322 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
.....++|||+|||+++|+++|+++|++||+|.+++++++ +|+++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999984 789999999999999999999997 9999999999999
Q ss_pred eccccc
Q psy14686 118 RAVPRE 123 (306)
Q Consensus 118 ~~~~~~ 123 (306)
++.+..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 987653
No 107
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=135.43 Aligned_cols=83 Identities=29% Similarity=0.514 Sum_probs=76.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
...+...++|||+|||+++|+++|+++|++||+|.++++++++.+|+++|||||+|.++++|++|++. ++..+.|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999976 99999999999
Q ss_pred Eeec
Q psy14686 116 TKRA 119 (306)
Q Consensus 116 v~~~ 119 (306)
|.++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9864
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1.5e-18 Score=135.62 Aligned_cols=86 Identities=19% Similarity=0.343 Sum_probs=79.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
+......++|||+|||+++|+++|+++|++||+|.+|.++.++.+|+++|||||+|.++++|++|++. ++..+.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34455688999999999999999999999999999999999988999999999999999999999986 99999999999
Q ss_pred Eeecccc
Q psy14686 116 TKRAVPR 122 (306)
Q Consensus 116 v~~~~~~ 122 (306)
|.++.++
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 9998764
No 109
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=128.04 Aligned_cols=85 Identities=28% Similarity=0.563 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
.......++|||+|||+++|+++|+++|++||+|.+|+++.++. .++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999863 4899999999999999999997 99999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 87 v~~a~~~~ 94 (103)
T 2cq3_A 87 VNNATARV 94 (103)
T ss_dssp EEECCSSC
T ss_pred EEEcccCC
Confidence 99987754
No 110
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=8.2e-19 Score=136.77 Aligned_cols=84 Identities=19% Similarity=0.403 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEE--EEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIV--DVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVE 115 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~ 115 (306)
..+...++|||+|||+++|+++|+++|++| .|. +|+|+.++. |+++|||||+|.++++|++|++.++..+.||.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 345567899999999999999999999999 677 999999986 9999999999999999999999988999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|..+.++.
T Consensus 115 V~~a~~~e 122 (126)
T 2hgm_A 115 VFKSSQEE 122 (126)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 98886543
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=7.8e-19 Score=138.92 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---EEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGE---IVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVV 114 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i 114 (306)
.++...++|||+|||+++|+++|+++|++||. |.+|+|++++. |+++|||||+|.++++|++|++.++..+.||.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34556789999999999999999999999999 89999999986 999999999999999999999999999999999
Q ss_pred EEeecccc
Q psy14686 115 ETKRAVPR 122 (306)
Q Consensus 115 ~v~~~~~~ 122 (306)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99988654
No 112
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=9.9e-19 Score=135.23 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---EEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGE---IVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVE 115 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~ 115 (306)
.....++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.++++|++|++.++..+.||.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 3456789999999999999999999999999 89999999985 9999999999999999999999999999999999
Q ss_pred Eeecccc
Q psy14686 116 TKRAVPR 122 (306)
Q Consensus 116 v~~~~~~ 122 (306)
|.++.++
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 113
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=8.7e-19 Score=142.98 Aligned_cols=111 Identities=32% Similarity=0.575 Sum_probs=97.0
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
..++.|++. +..+.|+.+.+.....+.. ....++|||+|||+++|+++|+++|++||+|.+++++.++.+|
T Consensus 56 ~~a~~A~~~--~~~~~g~~i~v~~~~~~~~-------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g 126 (167)
T 2cjk_A 56 SSVDEVVKT--QHILDGKVIDPKRAIPRDE-------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG 126 (167)
T ss_dssp HHHHHHHHS--CCEETTEECCCEECCCHHH-------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS
T ss_pred HHHHHHHhc--ccccCCeEcccccccchhh-------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC
Confidence 457788885 5678888888876554332 2235799999999999999999999999999999999998899
Q ss_pred CcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeecccc
Q psy14686 83 RSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPR 122 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~~~~ 122 (306)
+++|||||+|.++++|.+|++.++..+.|+.|.|.++.++
T Consensus 127 ~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 127 QSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp TTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred ccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999999999999999999999875
No 114
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=128.44 Aligned_cols=85 Identities=16% Similarity=0.311 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
..+....++|||+|||+++|+++|+++|++||+|.+|++++++. .++|||||+|.++++|++|++. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 34556789999999999999999999999999999999999863 3789999999999999999996 99999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 99987754
No 115
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=130.74 Aligned_cols=84 Identities=11% Similarity=0.219 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCC------CHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccC
Q psy14686 38 SEPESLRKLFIGGLDYRT------NDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEID 110 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~ 110 (306)
......++|||+|||+.+ |+++|+++|++||+|.+|++++ .+|+++|||||+|.++++|.+|++. +|..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344557899999999999 8899999999999999999983 5899999999999999999999997 999999
Q ss_pred Cc-EEEEeeccccc
Q psy14686 111 GR-VVETKRAVPRE 123 (306)
Q Consensus 111 g~-~i~v~~~~~~~ 123 (306)
|+ .|.|.++....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 99999987654
No 116
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=1e-18 Score=131.46 Aligned_cols=81 Identities=22% Similarity=0.566 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
....++|||+|||+++|+++|+++|++||+|.+++++.++ +|+++|||||+|.+.++|++|++ ++..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3456899999999999999999999999999999999998 99999999999999999999999 999999999999988
Q ss_pred ccc
Q psy14686 120 VPR 122 (306)
Q Consensus 120 ~~~ 122 (306)
.++
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 654
No 117
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=132.14 Aligned_cols=86 Identities=28% Similarity=0.573 Sum_probs=78.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
+.......++|||+|||+++|+++|+++|++||+|.+|+++.++ ++++|||||+|.+.++|++|++. ++..+.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556678999999999999999999999999999999999885 45899999999999999999997 9999999999
Q ss_pred EEeeccccc
Q psy14686 115 ETKRAVPRE 123 (306)
Q Consensus 115 ~v~~~~~~~ 123 (306)
.|.++.++.
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999987753
No 118
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=4.1e-18 Score=138.16 Aligned_cols=85 Identities=21% Similarity=0.412 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|+|+.++.+++++|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445679999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++.+.
T Consensus 114 ~~a~~~ 119 (156)
T 1h2v_Z 114 DWDAGF 119 (156)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 999764
No 119
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.1e-19 Score=137.21 Aligned_cols=85 Identities=14% Similarity=0.317 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEe
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~ 117 (306)
......++|||+|||+++|+++|+++|++||.|.++.++.+..+|+++|||||+|.+.++|.+||+.++..+.|+.|.|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 33456789999999999999999999999999998666666669999999999999999999999999999999999999
Q ss_pred ecccc
Q psy14686 118 RAVPR 122 (306)
Q Consensus 118 ~~~~~ 122 (306)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98764
No 120
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=127.81 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCC--ccCCcE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPH--EIDGRV 113 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~--~~~g~~ 113 (306)
.....++++|||+|||+++|+++|+++|++||+|.++++++ +||||||+|.+.++|.+|++. ++. .+.|++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 34455688999999999999999999999999999999985 468999999999999999997 554 488999
Q ss_pred EEEeeccccce
Q psy14686 114 VETKRAVPREV 124 (306)
Q Consensus 114 i~v~~~~~~~~ 124 (306)
|.|.+++++.+
T Consensus 89 i~V~~S~~k~l 99 (100)
T 3r27_A 89 AFVNYSTSQKI 99 (100)
T ss_dssp EEEEECSCSCC
T ss_pred EEEEecccccc
Confidence 99999987654
No 121
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=7.9e-19 Score=130.17 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
....++|||+|||+++|+++|+++|++||.|.++.++.++.+|+++|||||+|.++++|++|++. ++..+.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34468999999999999999999999999999999999888999999999999999999999997 99999999999988
Q ss_pred cc
Q psy14686 119 AV 120 (306)
Q Consensus 119 ~~ 120 (306)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 122
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=129.00 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=74.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..++||+|||..+++++|+++|++||.|.++++++|+.+|+++|||||+|.++++|++|+. .+|+..+.|+.++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~------~lng~~~~gr~l~ 92 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN------TLNGLRLQSKTIK 92 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHH------HHTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHH------HhCCCEECCEEEE
Confidence 4579999999999999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred cccCc
Q psy14686 201 THGTH 205 (306)
Q Consensus 201 v~~~~ 205 (306)
|.++.
T Consensus 93 V~~Ak 97 (99)
T 4fxv_A 93 VSYAR 97 (99)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 98763
No 123
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=132.61 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
..+.++|||+|||+++|++||+++|+.| .|.+|+|+.++. |+++|||||+|.++++|++||+.++..+.||.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3346799999999999999999999999 899999999984 99999999999999999999988999999999999888
Q ss_pred ccc
Q psy14686 120 VPR 122 (306)
Q Consensus 120 ~~~ 122 (306)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 124
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=129.43 Aligned_cols=83 Identities=24% Similarity=0.336 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|+++.++ +|+++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344567899999999999999999999999999999999998 699999999999999999999996 999999999999
Q ss_pred eeccc
Q psy14686 117 KRAVP 121 (306)
Q Consensus 117 ~~~~~ 121 (306)
.++..
T Consensus 89 ~~a~~ 93 (114)
T 2do0_A 89 KMDER 93 (114)
T ss_dssp EECSC
T ss_pred EEccc
Confidence 98864
No 125
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.3e-18 Score=122.69 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=68.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
.+.-|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.++++|.+|++. |+..+.||.|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999865 689999999999999999999 999999999999987
No 126
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=130.02 Aligned_cols=83 Identities=22% Similarity=0.371 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-EEEEEEe-eCCCCCCcceEEEEEecChHHHHHHHHc-C--CCccCCcEEE
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGE-IVDVVVM-KDPVTKRSRGFGFITYSESKMVDEAMSN-R--PHEIDGRVVE 115 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~~g~~kg~afV~f~~~~~a~~Al~~-~--~~~~~g~~i~ 115 (306)
.+.++|||+|||+++|+++|+++|++||+ |.++.++ .++.+|+++|||||+|.++++|.+|++. + +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 8888899999999999999999999997 4 5899999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99997754
No 127
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=127.17 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc---CCCccCCcEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN---RPHEIDGRVV 114 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~---~~~~~~g~~i 114 (306)
....+.++|||+|||+++|+++|+++|++||+|.+|+++++ ||||||+|.+.++|.+|++. ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 44456789999999999999999999999999999998864 68999999999999999985 6788999999
Q ss_pred EEeecccccee
Q psy14686 115 ETKRAVPREVK 125 (306)
Q Consensus 115 ~v~~~~~~~~~ 125 (306)
.|.++.++.+.
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999876543
No 128
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=5.7e-19 Score=129.69 Aligned_cols=79 Identities=30% Similarity=0.685 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecccc
Q psy14686 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPR 122 (306)
Q Consensus 44 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~ 122 (306)
++|||+|||+++|+++|+++|++||+|.++++++++.+|+++|||||+|.+.+ |.+|+.. ++..+.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 9999998 999999999999998765
Q ss_pred c
Q psy14686 123 E 123 (306)
Q Consensus 123 ~ 123 (306)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 129
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=126.92 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLK----AFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
..+.++|||+|||+++|+++|+ ++|++||+|.+|+++.++.+ +|||||+|.++++|++|++. ++..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998754 89999999999999999997 9999999999
Q ss_pred EEeeccccc
Q psy14686 115 ETKRAVPRE 123 (306)
Q Consensus 115 ~v~~~~~~~ 123 (306)
+|.++.++.
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999987653
No 130
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-18 Score=128.67 Aligned_cols=84 Identities=17% Similarity=0.393 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCcc-------
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEI------- 109 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~------- 109 (306)
......++|||+|||+++|+++|+++|++||+|.+++++.++ +|+++|||||+|.+.++|++|++. ++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999998 899999999999999999999997 88888
Q ss_pred -CCcEEEEeecccc
Q psy14686 110 -DGRVVETKRAVPR 122 (306)
Q Consensus 110 -~g~~i~v~~~~~~ 122 (306)
.+++|.|.++.++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5677888887654
No 131
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=8.3e-19 Score=133.23 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---EEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGE---IVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVV 114 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i 114 (306)
.+....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++|++.++..+.||.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 34567889999999999999999999999998 89999999986 999999999999999999999999999999999
Q ss_pred EEeecccc
Q psy14686 115 ETKRAVPR 122 (306)
Q Consensus 115 ~v~~~~~~ 122 (306)
.|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99988654
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=1.9e-18 Score=147.25 Aligned_cols=124 Identities=13% Similarity=0.157 Sum_probs=110.0
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRT 201 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v 201 (306)
+++||+|||+.+++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|+. .+++..+.|+.+++
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~------~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD------TMNFDVIKGKPVRI 89 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH------HHTTCEETTEECEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHH------HhhhhhcCCccccc
Confidence 579999999999999999999999999999999999999999999999999999999997 78888999999988
Q ss_pred ccCccccccCCCcccccccCCCcccCCCCchhhhccCCCceEEEEEeccc
Q psy14686 202 HGTHQEAKVDGVTTTNQTHGTIREVVGMDNSKVVAGEIKEVGVVSLVVDG 251 (306)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~g~i~~v~~~~~g 251 (306)
..+............+.++++++....+..+..+|+.+|.+..+.+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 90 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp EECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred ccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 87665544444445567799999999999999999999999998876553
No 133
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.74 E-value=1.3e-17 Score=136.76 Aligned_cols=110 Identities=18% Similarity=0.322 Sum_probs=90.8
Q ss_pred hHHHHHHHhcCCcccC---CeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCC
Q psy14686 3 GVMQYIFKLVPGLEVA---GTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDP 79 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~---g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 79 (306)
..++.|++.++|..+. +.++.+..... ........++|||+|||+++|+++|+++|++||+|.++++++++
T Consensus 58 ~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 131 (175)
T 3nmr_A 58 KAALEAQNALHNMKVLPGMHHPIQMKPADS------EKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP 131 (175)
T ss_dssp HHHHHHHHHHTTTCCCTTCSSCCEEEECGG------GCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred HHHHHHHHHhcCcEEccCCccceEEccccc------cccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 4678999999998875 34444433222 12334467899999999999999999999999999999999997
Q ss_pred CCCCcceEEEEEecChHHHHHHHHc-CCCccC---CcEEEEeec
Q psy14686 80 VTKRSRGFGFITYSESKMVDEAMSN-RPHEID---GRVVETKRA 119 (306)
Q Consensus 80 ~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~---g~~i~v~~~ 119 (306)
+|+++|||||+|.++++|.+|++. ++..+. +++|.|.++
T Consensus 132 -~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 132 -DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp -TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred -CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 699999999999999999999988 887665 499999876
No 134
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=5.3e-18 Score=139.55 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=95.2
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
+.+++|+ +++|..+.|+++.|..+.... .......++|||+|||+++|+++|+++|++||+|..+ ..+|
T Consensus 65 ~~a~~A~-~l~g~~~~g~~l~v~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~ 133 (175)
T 1fje_B 65 EDLEKAL-ELTGLKVFGNEIKLEKPKGRD-----SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDG 133 (175)
T ss_dssp HHHHHHH-HGGGEEETTEEEEEECCCCSS-----CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSS
T ss_pred HHHHHHH-hcCCCEeCCeEEEEecCCCcc-----ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCC
Confidence 4678899 599999999999998765432 2344567899999999999999999999999988766 3478
Q ss_pred CcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecccc
Q psy14686 83 RSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPR 122 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~ 122 (306)
+++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.++
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999997 999999999999998775
No 135
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=123.45 Aligned_cols=72 Identities=13% Similarity=0.292 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCc-EE
Q psy14686 43 LRKLFIGGLDYRT------NDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGR-VV 114 (306)
Q Consensus 43 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~-~i 114 (306)
+++|||+|||+++ |+++|+++|++||+|.++++++ .+|+++|||||+|.++++|++|++. ++..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3699999999999 7899999999999999999883 5899999999999999999999997 99999999 87
Q ss_pred EE
Q psy14686 115 ET 116 (306)
Q Consensus 115 ~v 116 (306)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 136
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=129.56 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HHhhccCCEEEEEEeeCCCCC---CcceEEEEEecChHHHHHHHHc-CCCccCC
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLK---AFFEQWGEIVDVVVMKDPVTK---RSRGFGFITYSESKMVDEAMSN-RPHEIDG 111 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g---~~kg~afV~f~~~~~a~~Al~~-~~~~~~g 111 (306)
.....++|||+|||+++|+++|+ ++|++||+|.+|++++++.++ +++|||||+|.++++|++|++. ++..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44557899999999999999999 999999999999999987654 5669999999999999999998 9999999
Q ss_pred cEEEEeeccccc
Q psy14686 112 RVVETKRAVPRE 123 (306)
Q Consensus 112 ~~i~v~~~~~~~ 123 (306)
+.|.|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999988764
No 137
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=134.22 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCE----EEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEI----VDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
...++|||+|||+++|++||+++|++||+| .+|+|+.++ +|+++|||||+|.++++|++|++.++..+.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 446899999999999999999999999975 689999996 899999999999999999999999999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 138
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=127.20 Aligned_cols=84 Identities=13% Similarity=0.314 Sum_probs=75.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
.......++|||+|||+++|+++|+++|++||+|.+|+++. +++++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34556789999999999999999999999999999999965 456899999999999999999976 99999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99987653
No 139
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=130.55 Aligned_cols=84 Identities=13% Similarity=0.238 Sum_probs=74.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-C--CCccCCcE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-R--PHEIDGRV 113 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~--~~~~~g~~ 113 (306)
.....+.++|||+|||+++||++|+++|++||+|.+|+++++ ||||||+|.+.++|.+|++. + +..+.|++
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 344556889999999999999999999999999999999874 68999999999999999986 3 67899999
Q ss_pred EEEeeccccceee
Q psy14686 114 VETKRAVPREVKV 126 (306)
Q Consensus 114 i~v~~~~~~~~~v 126 (306)
|+|.++.++.+.-
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998776543
No 140
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=131.18 Aligned_cols=83 Identities=14% Similarity=0.263 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLK----AFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRV 113 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~ 113 (306)
+..+.++|||+|||+++++++|+ ++|++||+|.+|.+.. ++++||||||+|.+.++|.+|++. +|..+.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34557899999999999999876 6999999999998753 688999999999999999999987 999999999
Q ss_pred EEEeeccccce
Q psy14686 114 VETKRAVPREV 124 (306)
Q Consensus 114 i~v~~~~~~~~ 124 (306)
|.|.++.++..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999987643
No 141
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=125.24 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=72.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc---CCCccCCcE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN---RPHEIDGRV 113 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~---~~~~~~g~~ 113 (306)
+....+.++|||+|||+++|+++|+++|++||+|.+|+++++ ||||||+|.+.++|.+|++. ++..+.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 344566789999999999999999999999999999998753 68999999999999999986 456799999
Q ss_pred EEEeecccccee
Q psy14686 114 VETKRAVPREVK 125 (306)
Q Consensus 114 i~v~~~~~~~~~ 125 (306)
|.|.++.++...
T Consensus 83 l~V~~a~~~~~~ 94 (104)
T 1wex_A 83 AFFNYSTSKRIT 94 (104)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCcccc
Confidence 999999876544
No 142
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.5e-17 Score=136.10 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|.|+.++.+|+++|||||+|.+.++|.+||+. ++..+.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999987 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++.++
T Consensus 147 ~~a~~~ 152 (165)
T 1rk8_A 147 DWCFVK 152 (165)
T ss_dssp EESEEC
T ss_pred EEecCC
Confidence 998664
No 143
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=8.1e-18 Score=128.39 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=77.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
.++++||+|||+.+++++|+++|++||.|.+++|++|+.||+++|||||+|++.++|++|+. .+|+..+.|+.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~------~lng~~~~gr~i 78 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVK------NLHLTSVMGNII 78 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH------HHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHH------HhCCCEECCeEE
Confidence 35689999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred ccccCcccc
Q psy14686 200 RTHGTHQEA 208 (306)
Q Consensus 200 ~v~~~~~~~ 208 (306)
++..+....
T Consensus 79 ~V~~a~~~~ 87 (110)
T 3s8s_A 79 HAQLDIKGQ 87 (110)
T ss_dssp EEEECSTTH
T ss_pred EEEECCCCc
Confidence 999875443
No 144
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=125.12 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-C--CCccCCcE
Q psy14686 38 SEPESLRKLFIGGLDY-RTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-R--PHEIDGRV 113 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~--~~~~~g~~ 113 (306)
....+.++|||+|||+ ++|++||+++|++||+|.+|+++++ +|||||+|.++++|.+|++. + +..+.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3445688999999999 9999999999999999999999864 47999999999999999986 4 56699999
Q ss_pred EEEeecccc
Q psy14686 114 VETKRAVPR 122 (306)
Q Consensus 114 i~v~~~~~~ 122 (306)
|.|.++.+.
T Consensus 84 l~V~~a~~~ 92 (102)
T 1x4d_A 84 VRVHLSQKY 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999998754
No 145
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=6.1e-18 Score=126.89 Aligned_cols=73 Identities=19% Similarity=0.431 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccc
Q psy14686 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVP 121 (306)
Q Consensus 44 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~ 121 (306)
++|||+|||+++|+++|+++|++||+|.+|+++.+ ++|||||+|.++++|++|++. ++..+.|+.|.|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 48999999999999999999999999999999876 688999999999999999997 89999999999998765
No 146
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=123.54 Aligned_cols=84 Identities=27% Similarity=0.455 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
...+...++|||+|||+++|+++|+++|++|+ +++++.++.+++++|||||+|.++++|++|++. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999874 678888888999999999999999999999996 99999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998754
No 147
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-18 Score=131.20 Aligned_cols=84 Identities=20% Similarity=0.327 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEee
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKR 118 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~ 118 (306)
.+...++|||+|||+++|+++|+++|++||.|.+ .++.+..+|+++|||||+|.+.++|++|++.++..+.|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEE
Confidence 3456789999999999999999999999999888 667777789999999999999999999999999999999999999
Q ss_pred ccccc
Q psy14686 119 AVPRE 123 (306)
Q Consensus 119 ~~~~~ 123 (306)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 87654
No 148
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=1.1e-17 Score=140.50 Aligned_cols=118 Identities=11% Similarity=0.163 Sum_probs=92.3
Q ss_pred hHHHHHHHhc--CCcccCCeeeccccccccccccCC--CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeC
Q psy14686 3 GVMQYIFKLV--PGLEVAGTVVPLAMIINKAMEDSQ--CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKD 78 (306)
Q Consensus 3 ~~~~~A~~~~--~g~~~~g~~~~v~~~~~~~~~~~~--~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 78 (306)
+.+..|++.. ..+++.+....+...+..+.+... .......++|||+|||+++|+++|+++|++||+|.+|+++++
T Consensus 65 ~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~ 144 (193)
T 2voo_A 65 NVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT 144 (193)
T ss_dssp HHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC
T ss_pred HHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC
Confidence 3567788888 777777765555433211100000 001224689999999999999999999999999999999998
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeeccc
Q psy14686 79 PVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVP 121 (306)
Q Consensus 79 ~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~~~ 121 (306)
. +|+++|||||+|.++++|.+|++..+..+.|+.|.|.+...
T Consensus 145 ~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 145 L-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp T-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred C-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 7 69999999999999999999999977799999999998754
No 149
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=124.30 Aligned_cols=82 Identities=24% Similarity=0.466 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+...++|||+|||+++|+++|+++|++||+| +++.+ .+++++|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999999999999999999999987 56776 4899999999999999999999996 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9987753
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.5e-18 Score=136.43 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=74.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEe
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~ 117 (306)
..+...++|||+|||+++|++||+++|++|| |.+|+|+.++. |+++|||||+|.++++|++||+.++..+.||.|.|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3455678999999999999999999999999 77999999985 999999999999999999999779999999999998
Q ss_pred eccccc
Q psy14686 118 RAVPRE 123 (306)
Q Consensus 118 ~~~~~~ 123 (306)
.+.++.
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 887653
No 151
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=126.17 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=73.7
Q ss_pred cceeecccccccchHHHHHHhccCC-CeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceecc-CceEecCccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYG-TIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEV-DQEVINGEDH 199 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G-~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~-~~~~i~g~~i 199 (306)
+.++|+|||+.+++++|+++|++|| .|.+|+|++|+.+|.++|||||+|.+.++|++|++ .+ ++..+.|+.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~------~~~~~~~~~gr~i 75 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME------ANQHSLNILGQKV 75 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH------TTTTEEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH------hcCCCeEECCEEE
Confidence 5689999999999999999999999 89999999999999999999999999999999996 44 5667899999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++..+++
T Consensus 76 ~V~~a~~~~~ 85 (91)
T 2lxi_A 76 SMHYSDPKPK 85 (91)
T ss_dssp EEECCCSCCC
T ss_pred EEEEcCCCCC
Confidence 9988765443
No 152
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=120.00 Aligned_cols=77 Identities=19% Similarity=0.553 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
.+...++|||+|||+++|+++|+++|++||+|.+++++ +|||||+|.++++|++|++. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999999987 47999999999999999987 9999999999999
Q ss_pred eccccc
Q psy14686 118 RAVPRE 123 (306)
Q Consensus 118 ~~~~~~ 123 (306)
++.++.
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 987654
No 153
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=2.1e-17 Score=142.39 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEee
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWG--EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKR 118 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~ 118 (306)
..++|||+|||+++|+++|+++|++|| +|.+|+|++++.+|++||||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999996 99999999999999
Q ss_pred cccc
Q psy14686 119 AVPR 122 (306)
Q Consensus 119 ~~~~ 122 (306)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 154
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=122.69 Aligned_cols=80 Identities=23% Similarity=0.474 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
....+.++|||+|||+++|+++|+++|++||+|.+|+++++ +|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 44567889999999999999999999999999999999853 68999999999999999987 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9987754
No 155
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=117.68 Aligned_cols=78 Identities=23% Similarity=0.475 Sum_probs=70.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc--CCCccCCcEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN--RPHEIDGRVV 114 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~--~~~~~~g~~i 114 (306)
+..+...++|||+|||+++|+++|+++|++||+|.++++++ ++|||||+|.++++|++|++. ++..+.|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 34456678999999999999999999999999999999986 368999999999999999995 8999999999
Q ss_pred EEeecc
Q psy14686 115 ETKRAV 120 (306)
Q Consensus 115 ~v~~~~ 120 (306)
.|.+++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 998863
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=125.27 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc---CCCccCCcEE
Q psy14686 39 EPESLRKLFIGGLDYR-TNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN---RPHEIDGRVV 114 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~---~~~~~~g~~i 114 (306)
+..+.++|||+|||++ +|+++|+++|++||+|.+|++++ +||||||+|.++++|++|++. ++..+.||+|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556889999999998 99999999999999999999974 468999999999999999985 5677999999
Q ss_pred EEeeccccc
Q psy14686 115 ETKRAVPRE 123 (306)
Q Consensus 115 ~v~~~~~~~ 123 (306)
.|.++.++.
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999987654
No 157
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=2.7e-17 Score=126.48 Aligned_cols=80 Identities=14% Similarity=0.331 Sum_probs=72.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..++||+|||+.+++++|+++|++||.|.+|+|++|+ +.++|||||+|.+.++|++||. .+++..+.|+.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~------~l~~~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE------KMNGMLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHH------HHTTCEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHH------HcCCCEECCEEEE
Confidence 3579999999999999999999999999999999986 5589999999999999999997 7899999999999
Q ss_pred cccCcccc
Q psy14686 201 THGTHQEA 208 (306)
Q Consensus 201 v~~~~~~~ 208 (306)
+.++....
T Consensus 77 V~~a~~~~ 84 (115)
T 4f25_A 77 VGRFKSRK 84 (115)
T ss_dssp EEESSCCC
T ss_pred EEECCCcc
Confidence 98765443
No 158
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9e-19 Score=134.94 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEE--------EEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCcc
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVD--------VVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEI 109 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~ 109 (306)
+..+.++|||+|||+++|+++|+++|++||.|.+ |+++.++.+|+++|||||+|.+.++|++|++. ++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999999 99999988999999999999999999999997 99999
Q ss_pred CCcEEEEeeccccc
Q psy14686 110 DGRVVETKRAVPRE 123 (306)
Q Consensus 110 ~g~~i~v~~~~~~~ 123 (306)
.|+.|.|.++.++.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999987754
No 159
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.6e-17 Score=123.42 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+...++|||+|||+++|+++|+++|++||+|.++++. +++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 445567899999999999999999999999999999987 3578999999999999999987 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++.++
T Consensus 96 ~~a~~~ 101 (101)
T 2la4_A 96 GWGKER 101 (101)
T ss_dssp CBCCCC
T ss_pred EeccCC
Confidence 998753
No 160
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.4e-17 Score=123.86 Aligned_cols=82 Identities=22% Similarity=0.453 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLK----AFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRV 113 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~ 113 (306)
+..+.++|||+|||+++|+++|+ ++|++||+|.+|+++. +|+++|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999999874 578899999999999999999997 999999999
Q ss_pred EEEeeccccc
Q psy14686 114 VETKRAVPRE 123 (306)
Q Consensus 114 i~v~~~~~~~ 123 (306)
|.|.++.++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999987653
No 161
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=120.69 Aligned_cols=78 Identities=22% Similarity=0.386 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccC--CcEEE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEID--GRVVE 115 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~--g~~i~ 115 (306)
.....++|||+|||+++|+++|+++|++||+|.+|+++++ +|||||+|.+.++|++|++. ++..+. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3455789999999999999999999999999999998753 67999999999999999997 999999 99999
Q ss_pred Eeecccc
Q psy14686 116 TKRAVPR 122 (306)
Q Consensus 116 v~~~~~~ 122 (306)
|.++.++
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998765
No 162
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.8e-18 Score=129.02 Aligned_cols=86 Identities=19% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||.|.++.+..+..+|+++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3345678999999999999999999999999984332222222788999999999999999999987 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9987654
No 163
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=120.86 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+...++|||+|||+++|+++|+++|++||.|. +.++. ++++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445678999999999999999999999999997 67765 35789999999999999999987 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9987653
No 164
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=8.4e-17 Score=119.88 Aligned_cols=78 Identities=21% Similarity=0.400 Sum_probs=69.6
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 37 CSEPESLRKLFIGGLDY-RTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
.......++|||+|||+ ++|+++|+++|++||+|.++++. +|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456789999999998 99999999999999999999983 68999999999999999997 9999999999
Q ss_pred EEeecccc
Q psy14686 115 ETKRAVPR 122 (306)
Q Consensus 115 ~v~~~~~~ 122 (306)
.|.++.++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998764
No 165
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=4.6e-17 Score=123.80 Aligned_cols=79 Identities=16% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
...+...++|||+|||+++|+++|+++|++||+|.+|+++ +|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455678999999999999999999999999999999987 57999999999999999997 99999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99987653
No 166
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.3e-17 Score=125.88 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccC-CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWG-EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
+...++|||+|||+++|+++|+++|++|| +|..+.+.. ++++|||||+|.++++|++|++. ++..+.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578999999999999999999999999 999998853 35889999999999999999987 9999999999999
Q ss_pred eccc
Q psy14686 118 RAVP 121 (306)
Q Consensus 118 ~~~~ 121 (306)
++..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 8864
No 167
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=7.1e-18 Score=125.17 Aligned_cols=79 Identities=15% Similarity=0.336 Sum_probs=71.1
Q ss_pred cceeecccccccchHHHHHHhccCCC--eeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCce----Eec
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGT--IESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQE----VIN 195 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~--I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~----~i~ 195 (306)
+++||+|||+.+|+++|+++|++||. +.+|++++|+.+|++||||||+|.+.++|++|++ .+|+. .+.
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~------~lng~~~~~~i~ 83 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQ------ILQSLHPPLKID 83 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHH------HHHSSSSCEEET
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHH------HhcCCCCCceEC
Confidence 47999999999999999999999995 6799999999999999999999999999999998 55553 588
Q ss_pred CcccccccCcc
Q psy14686 196 GEDHRTHGTHQ 206 (306)
Q Consensus 196 g~~i~v~~~~~ 206 (306)
|+.+.+.++..
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999987754
No 168
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.9e-17 Score=122.14 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCC-----cE
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDG-----RV 113 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g-----~~ 113 (306)
....++|||+|||+++|+++|+++|++||+|.+|+++.+ |||||+|.+.++|++||+. ++..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999875 7999999999999999996 9999999 99
Q ss_pred EEEeeccccc
Q psy14686 114 VETKRAVPRE 123 (306)
Q Consensus 114 i~v~~~~~~~ 123 (306)
|.|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999987753
No 169
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.6e-17 Score=120.83 Aligned_cols=81 Identities=12% Similarity=0.220 Sum_probs=71.3
Q ss_pred cceeecccccccchHHHHHHhccCC--CeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYG--TIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G--~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
.++||+|||..+++++|+++|++|| .|.++++++|+.+|+++|||||+|.+.++|++|+. .+|+..+.|+.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~------~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD------LLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH------HGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH------HcCCCeeCCEEE
Confidence 3689999999999999999999999 99999999999999999999999999999999997 789999999999
Q ss_pred ccccCcccc
Q psy14686 200 RTHGTHQEA 208 (306)
Q Consensus 200 ~v~~~~~~~ 208 (306)
+|..+...+
T Consensus 76 ~V~~~~~~~ 84 (90)
T 3p5t_L 76 VVTPSNKLE 84 (90)
T ss_dssp EECCC----
T ss_pred EEEECCCCc
Confidence 998765543
No 170
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=122.44 Aligned_cols=79 Identities=19% Similarity=0.444 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
.+...++|||+|||+++|+++|+++|++||+|.+|+++++ +|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999875 67999999999999999977 9999999999999
Q ss_pred eccccc
Q psy14686 118 RAVPRE 123 (306)
Q Consensus 118 ~~~~~~ 123 (306)
++.++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987754
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=1e-16 Score=135.87 Aligned_cols=115 Identities=9% Similarity=0.059 Sum_probs=91.7
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCC------------------------------CCCCCCCCeEEEcCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQ------------------------------CSEPESLRKLFIGGLD 52 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~------------------------------~~~~~~~~~l~V~nLp 52 (306)
..++.|++.|||..+.|++|.|..+........+ .....+.++|||+|||
T Consensus 53 ~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp 132 (205)
T 3tyt_A 53 YAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAP 132 (205)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEEC
T ss_pred HHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCC
Confidence 4688999999999999999999875432210000 0011345789999999
Q ss_pred CCCCHHHHHHHhhccCCE--EEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCc----EEEEeec
Q psy14686 53 YRTNDDSLKAFFEQWGEI--VDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGR----VVETKRA 119 (306)
Q Consensus 53 ~~~te~~L~~~F~~~G~i--~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~----~i~v~~~ 119 (306)
+++|+++|+++|++||.| .++++..+. +.++|||||+|.+.++|.+||.. ++..+.|+ ++.|+++
T Consensus 133 ~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 133 LEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp TTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999999999 899998875 55679999999999999999998 99999886 5666543
No 172
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=3e-17 Score=121.90 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
.....++|||+|||+++|+++|+++|++||+|..+ ..+|+++|||||+|.++++|.+|++. ++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988766 23789999999999999999999996 9999999999999
Q ss_pred eccccc
Q psy14686 118 RAVPRE 123 (306)
Q Consensus 118 ~~~~~~ 123 (306)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 987653
No 173
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.2e-16 Score=115.27 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=74.6
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRT 201 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v 201 (306)
.+++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+. .+++..+.|+.+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~------~l~g~~~~g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD------SMQGQDLNGRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH------HHTTCEETTEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHH------HhcCCeeCCcEEEE
Confidence 368999999999999999999999999999999999999999999999999999999997 78999999999999
Q ss_pred ccCccc
Q psy14686 202 HGTHQE 207 (306)
Q Consensus 202 ~~~~~~ 207 (306)
.++..+
T Consensus 76 ~~a~~~ 81 (83)
T 3md1_A 76 NWAAKL 81 (83)
T ss_dssp EECCCC
T ss_pred EecCcC
Confidence 877654
No 174
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=6e-17 Score=118.75 Aligned_cols=79 Identities=29% Similarity=0.501 Sum_probs=63.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEee
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKR 118 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~ 118 (306)
.+....+|||+|||+++|+++|+++|++||+|.+|+++++ +||||||+|.++++|+++.. ....+.|+.+.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEE
Confidence 3456789999999999999999999999999999999874 78999999999999985322 23445699999999
Q ss_pred ccccc
Q psy14686 119 AVPRE 123 (306)
Q Consensus 119 ~~~~~ 123 (306)
+.++.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87754
No 175
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=117.56 Aligned_cols=79 Identities=18% Similarity=0.414 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeec
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~ 119 (306)
....++|||+|||+++|+++|+++|++||+|.+| +.++.+|+ ||||+|.++++|++|++.++..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 4456899999999999999999999999999987 66665665 999999999999999999999999999999987
Q ss_pred cccc
Q psy14686 120 VPRE 123 (306)
Q Consensus 120 ~~~~ 123 (306)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6543
No 176
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=9.2e-17 Score=116.87 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=74.4
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..+++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ------QMGGQWLGGRQIR 79 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH------HHTTCEETTEECE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHH------HcCCCEECCeEEE
Confidence 4679999999999999999999999999999999998899999999999999999999997 7889999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
+.++..+
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9876543
No 177
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=117.79 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=71.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcE
Q psy14686 37 CSEPESLRKLFIGGLDYRTNDDSLKAFFEQW--GEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRV 113 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~ 113 (306)
.......++|||+|||+++|+++|+++|++| |.|.+++++ +|||||+|.+.++|++|++. ++..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445568999999999999999999999999 999998864 56999999999999999996 999999999
Q ss_pred EEEeeccccc
Q psy14686 114 VETKRAVPRE 123 (306)
Q Consensus 114 i~v~~~~~~~ 123 (306)
|.|.++.++.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999987754
No 178
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=1.4e-16 Score=121.35 Aligned_cols=75 Identities=19% Similarity=0.451 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 40 PESLRKLFIGGLDYR-TNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
....++|||+|||++ +|+++|+++|++||+|.+|++ ++|||||+|.++++|++|++. ++..+.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999998 468999999999999999977 9999999999999
Q ss_pred ecccc
Q psy14686 118 RAVPR 122 (306)
Q Consensus 118 ~~~~~ 122 (306)
++.+.
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98743
No 179
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1e-16 Score=132.70 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
.....++|||+|||+++|+++|+++|++||+|.+|.++.++ +|+++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998 899999999999999999999996 9999999999999
Q ss_pred eccccc
Q psy14686 118 RAVPRE 123 (306)
Q Consensus 118 ~~~~~~ 123 (306)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987653
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.6e-17 Score=123.92 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=71.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecC----hHH----HHHHHH--c-CCCc
Q psy14686 44 RKLFIGGL----DYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE----SKM----VDEAMS--N-RPHE 108 (306)
Q Consensus 44 ~~l~V~nL----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~----~~~----a~~Al~--~-~~~~ 108 (306)
.+|||+|| |+++++++|+++|++||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 434 788888 4 9999
Q ss_pred cCCcEEEEeecccc
Q psy14686 109 IDGRVVETKRAVPR 122 (306)
Q Consensus 109 ~~g~~i~v~~~~~~ 122 (306)
+.|+.|+|......
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999977554
No 181
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=117.09 Aligned_cols=79 Identities=20% Similarity=0.417 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+...++|||+|||+++|+++|+++|++||+|.+|++++ +||||+|.++++|.+|++. ++..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4556789999999999999999999999999999999873 3999999999999999987 999999999999
Q ss_pred eeccccce
Q psy14686 117 KRAVPREV 124 (306)
Q Consensus 117 ~~~~~~~~ 124 (306)
.++.++..
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99977643
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=2.2e-16 Score=138.63 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=94.8
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g 82 (306)
..++.|++.++|..+.|+.+.|..+.+ .++|||+|||+++|+++|+++|++||+|.+|+++.+. +|
T Consensus 69 ~~A~~A~~~l~g~~i~g~~l~v~~a~~-------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g 134 (261)
T 3sde_A 69 TLAEIAKAELDGTILKSRPLRIRFATH-------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RG 134 (261)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCC-------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TS
T ss_pred HHHHHHHHHcCCcEECCceeEeeeccc-------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CC
Confidence 467899999999999999999976542 5799999999999999999999999999999999995 89
Q ss_pred CcceEEEEEecChHHHHHHHHc--CCCccC---CcEEEEeecccc
Q psy14686 83 RSRGFGFITYSESKMVDEAMSN--RPHEID---GRVVETKRAVPR 122 (306)
Q Consensus 83 ~~kg~afV~f~~~~~a~~Al~~--~~~~~~---g~~i~v~~~~~~ 122 (306)
+++|||||+|.+.++|.+|++. ++..+. +++|.|.++.+.
T Consensus 135 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 135 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999999999999999999998 555554 899999988654
No 183
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-17 Score=125.22 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeecc
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAV 120 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~ 120 (306)
..++|||+|||+++|+++|+++|++||+|.+|.++. ++|||||+|.+.++|++|++. ++..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999874 568999999999999999997 9999999999999986
Q ss_pred ccceeeccccc
Q psy14686 121 PREVKVRRVTK 131 (306)
Q Consensus 121 ~~~~~v~nl~~ 131 (306)
.. .+..+.+.
T Consensus 83 ~~-~~~~~~~~ 92 (111)
T 1whx_A 83 IG-VFGAAPQK 92 (111)
T ss_dssp TT-TTCCCCCS
T ss_pred CC-ccCCCCCc
Confidence 53 44444333
No 184
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=2.5e-17 Score=130.31 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=77.4
Q ss_pred EEEEEecChHHHHHHHHc-CCCccCCcE-EEEe-----eccccceeecccccccchHHHHHHhccCCCeeEEEEEecCCC
Q psy14686 87 FGFITYSESKMVDEAMSN-RPHEIDGRV-VETK-----RAVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKET 159 (306)
Q Consensus 87 ~afV~f~~~~~a~~Al~~-~~~~~~g~~-i~v~-----~~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~ 159 (306)
++|.+|.+...+..|++. ++....|+. +... ....++++|+|||..+++++|+++|++||.|..+++++++.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 85 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 85 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 678888999999999887 443333322 1111 112357999999999999999999999999999999999889
Q ss_pred CCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCccccc
Q psy14686 160 GAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQEAK 209 (306)
Q Consensus 160 g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~~~~ 209 (306)
+.++|||||+|.+.++|++|+. .+++..+.|+.++|.++.....
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~------~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMD------AMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHT------TTTTCCSSSSCCEEEECCCCCC
T ss_pred CccceEEEEEECCHHHHHHHHH------HcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999997 7889999999999998765443
No 185
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=1.7e-16 Score=119.39 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|||+++|+++|+++|++||+|.+|+++ +|||||+|.++++|++|++. ++..+.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 344567899999999999999999999999999999987 34999999999999999997 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 78 ~~a~~~~ 84 (103)
T 2dgu_A 78 VFAKPPD 84 (103)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 9987654
No 186
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=116.05 Aligned_cols=77 Identities=17% Similarity=0.438 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+...++|||+|||+++|+++|+++|++||+|.++++++ +||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456688999999999999999999999999999999873 3999999999999999997 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++.++
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998765
No 187
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=121.95 Aligned_cols=86 Identities=17% Similarity=0.337 Sum_probs=78.1
Q ss_pred ccccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 119 AVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
..++++||+|||..+++++|+++|++||.|.+++++.++ +|.++|||||+|.+.++|++|+. .+++..+.|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~------~l~g~~~~g~~ 77 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK------DMNGKSLHGKA 77 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHH------HCSSCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHH------HhCCCEECCEE
Confidence 346789999999999999999999999999999999997 89999999999999999999997 78999999999
Q ss_pred cccccCccccccC
Q psy14686 199 HRTHGTHQEAKVD 211 (306)
Q Consensus 199 i~v~~~~~~~~~~ 211 (306)
+++.++.......
T Consensus 78 l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 78 IKVEQAKKPSFQS 90 (116)
T ss_dssp CEEEECCCSSCSS
T ss_pred EEEEECCCCCCCC
Confidence 9999876655443
No 188
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=3.3e-17 Score=122.77 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=75.1
Q ss_pred ccceeeccccc------ccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe
Q psy14686 121 PREVKVRRVTK------VQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI 194 (306)
Q Consensus 121 ~~~~~v~nl~~------~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i 194 (306)
.+.+||+|||. .+++++|+++|++||.|.+++|++|+.||+++|||||+|.+.++|++|+. .+|+..+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~------~lng~~~ 79 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIK------SFHGKRL 79 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH------HHTTCBS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH------HhCCccc
Confidence 46799999999 99999999999999999999999999999999999999999999999997 7899999
Q ss_pred cC-cccccccCcc
Q psy14686 195 NG-EDHRTHGTHQ 206 (306)
Q Consensus 195 ~g-~~i~v~~~~~ 206 (306)
.| +.+++..+..
T Consensus 80 ~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 80 DLKHRLFLYTMKD 92 (100)
T ss_dssp SSSCBCEEEESHH
T ss_pred CCCeEEEEEECch
Confidence 99 9999987654
No 189
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=117.57 Aligned_cols=84 Identities=15% Similarity=0.299 Sum_probs=77.6
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
.+++++|+|||..+++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 77 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE------QLNGFELAGRPM 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHH------HHTTCCSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHH------HhCCCeeCCcEE
Confidence 45789999999999999999999999999999999999999999999999999999999997 689999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 78 ~V~~a~~~~~ 87 (95)
T 2dnz_A 78 RVGHVTERLD 87 (95)
T ss_dssp EEEESSCCCC
T ss_pred EEEEcccccC
Confidence 9998766544
No 190
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=4.4e-16 Score=119.49 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=78.5
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|..++|++++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 87 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ------QMGGQWLGGRQI 87 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH------HTTTCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH------HhCCCEECCEEE
Confidence 34679999999999999999999999999999999998899999999999999999999997 789999999999
Q ss_pred ccccCccccccC
Q psy14686 200 RTHGTHQEAKVD 211 (306)
Q Consensus 200 ~v~~~~~~~~~~ 211 (306)
+|.++.......
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999887655443
No 191
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.3e-16 Score=118.60 Aligned_cols=76 Identities=21% Similarity=0.416 Sum_probs=68.3
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 39 EPESLRKLFIGGLDY-RTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
+..+.++|||+|||+ ++|+++|+++|++||+|.++++. +|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345688999999998 99999999999999999999984 57999999999999999997 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
.++.++
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 998654
No 192
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=118.45 Aligned_cols=84 Identities=17% Similarity=0.287 Sum_probs=77.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 87 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA------GVSGFGYDHLIL 87 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH------HTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHH------HcCCCeeCCcEE
Confidence 35679999999999999999999999999999999999899999999999999999999997 789999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 88 ~v~~a~~~~~ 97 (103)
T 2cq0_A 88 NVEWAKPSTN 97 (103)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9998765544
No 193
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=117.03 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEE-EEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEe
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDV-VVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETK 117 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~ 117 (306)
....++|||+|||+++|+++|+++|++||+|.++ .++.++.+| .|||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 488876544 499999999999999996 9999999999999
Q ss_pred ecccc
Q psy14686 118 RAVPR 122 (306)
Q Consensus 118 ~~~~~ 122 (306)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98775
No 194
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=2.9e-16 Score=114.27 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=70.6
Q ss_pred ccccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 119 AVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
...+++||+|||..+++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|+. .++..+.|+.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-------~~~~~~~g~~ 81 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-------QKEHRLDGRV 81 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-------SSCEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-------hCCCEECCEE
Confidence 345689999999999999999999999999999999999999999999999999999999995 4566788888
Q ss_pred ccccc
Q psy14686 199 HRTHG 203 (306)
Q Consensus 199 i~v~~ 203 (306)
+++..
T Consensus 82 i~v~~ 86 (87)
T 3s7r_A 82 IDPKK 86 (87)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88764
No 195
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=117.12 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=75.2
Q ss_pred cccceeecccccccchHHHHHHhccCCCee-EEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIE-SVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~-~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
..+++||+|||..+++++|+++|++||.|. ++++++|+.++.++|||||+|.+.++|++|+. .+|+..+.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH------KINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHH------TTTTSEESSCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHH------HHcCCccCCCC
Confidence 356899999999999999999999999999 99999999999999999999999999999997 78999999999
Q ss_pred ----cccccCccc
Q psy14686 199 ----HRTHGTHQE 207 (306)
Q Consensus 199 ----i~v~~~~~~ 207 (306)
+++.++...
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 888766543
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=131.56 Aligned_cols=115 Identities=10% Similarity=0.201 Sum_probs=94.6
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCC----------------------------CCCCCCCCeEEEcCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQ----------------------------CSEPESLRKLFIGGLDYR 54 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~----------------------------~~~~~~~~~l~V~nLp~~ 54 (306)
+.++.|++.|+|..+.|+++.+..+......... .....+.++|||+|||++
T Consensus 52 ~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~ 131 (198)
T 1qm9_A 52 NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 131 (198)
T ss_dssp HHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTT
T ss_pred HHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCC
Confidence 4678999999999999999999775543211000 011234789999999999
Q ss_pred CCHHHHHHHhhccC-CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccC-CcEEEEeecccc
Q psy14686 55 TNDDSLKAFFEQWG-EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEID-GRVVETKRAVPR 122 (306)
Q Consensus 55 ~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~-g~~i~v~~~~~~ 122 (306)
+|+++|+++|++|| +|.++++..+ .+|||||+|.+.++|.+|++. ++..+. |+.|.|.++.++
T Consensus 132 ~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 132 VSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999 9999998654 268999999999999999997 999999 999999998753
No 197
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=1.4e-16 Score=115.43 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=74.1
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.++++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 79 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID------NMNESELFGRTI 79 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH------HHTTCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHH------HhCCCEECCcEE
Confidence 45789999999999999999999999999999999998899999999999999999999997 789999999999
Q ss_pred ccccC
Q psy14686 200 RTHGT 204 (306)
Q Consensus 200 ~v~~~ 204 (306)
++.++
T Consensus 80 ~v~~a 84 (85)
T 3mdf_A 80 RVNLA 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98765
No 198
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=117.51 Aligned_cols=83 Identities=19% Similarity=0.357 Sum_probs=75.9
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.++++++++.++.++|||||+|++.++|++|+. . ++..+.|+.+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~------~-~~~~~~g~~l 87 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA------S-RPHTLDGRNI 87 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHH------H-CSEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHH------h-CCCeECCEEE
Confidence 45689999999999999999999999999999999999999999999999999999999996 5 8899999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9987765443
No 199
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=118.06 Aligned_cols=78 Identities=22% Similarity=0.496 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC-EEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CC-CccCCcEEE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGE-IVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RP-HEIDGRVVE 115 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~-~~~~g~~i~ 115 (306)
.+...++|||+|||+++|+++|+++|++||+ |..+.+. ++|||||+|.++++|++|++. ++ ..+.|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6666653 468999999999999999987 99 999999999
Q ss_pred Eeeccccc
Q psy14686 116 TKRAVPRE 123 (306)
Q Consensus 116 v~~~~~~~ 123 (306)
|.++.++.
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99987754
No 200
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=117.79 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=77.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.++++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 80 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA------EVDGQVFQGRML 80 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHH------HTTTEESSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHH------HhCCCEECCcEE
Confidence 35689999999999999999999999999999999999899999999999999999999997 789999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9998766544
No 201
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=116.62 Aligned_cols=84 Identities=14% Similarity=0.267 Sum_probs=76.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCC---CCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKE---TGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~---~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
..+++||+|||..+++++|+++|++||.|..+++++++. ++.++|||||+|.+.++|++|+. .+++..+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK------QLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHH------HSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHH------HhCCCeeCC
Confidence 356899999999999999999999999999999999886 66999999999999999999997 789999999
Q ss_pred cccccccCccccc
Q psy14686 197 EDHRTHGTHQEAK 209 (306)
Q Consensus 197 ~~i~v~~~~~~~~ 209 (306)
+.+++.++.....
T Consensus 78 ~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 78 HKLEVRISERATK 90 (98)
T ss_dssp EECEEECSSCSSC
T ss_pred eEEEEEEccCCCC
Confidence 9999998766544
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=6.5e-16 Score=132.99 Aligned_cols=115 Identities=10% Similarity=0.201 Sum_probs=94.7
Q ss_pred hHHHHHHHhcCCcccCCeeeccccccccccccCC----------------------------CCCCCCCCeEEEcCCCCC
Q psy14686 3 GVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQ----------------------------CSEPESLRKLFIGGLDYR 54 (306)
Q Consensus 3 ~~~~~A~~~~~g~~~~g~~~~v~~~~~~~~~~~~----------------------------~~~~~~~~~l~V~nLp~~ 54 (306)
+.++.|++.++|..+.|+++.|..+......... .....+.++|||+|||++
T Consensus 83 ~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~ 162 (229)
T 2adc_A 83 NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 162 (229)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTT
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCcc
Confidence 4688999999999999999999776543111000 011234689999999999
Q ss_pred CCHHHHHHHhhccC-CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccC-CcEEEEeecccc
Q psy14686 55 TNDDSLKAFFEQWG-EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEID-GRVVETKRAVPR 122 (306)
Q Consensus 55 ~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~-g~~i~v~~~~~~ 122 (306)
+|+++|+++|++|| +|.+++++.+ ++|||||+|.+.++|.+|++. ++..+. |+.|.|.++.++
T Consensus 163 ~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 163 VSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999 9999998653 368999999999999999997 999999 999999998764
No 203
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=117.77 Aligned_cols=84 Identities=15% Similarity=0.302 Sum_probs=77.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEE-EEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESV-NMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v-~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
..++++|+|||..+++++|+++|++||.|..+ ++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~ 77 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE------AMNGQYLCNRP 77 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHH------TTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHH------HcCCCEECCEE
Confidence 35689999999999999999999999999999 999998899999999999999999999997 78999999999
Q ss_pred cccccCccccc
Q psy14686 199 HRTHGTHQEAK 209 (306)
Q Consensus 199 i~v~~~~~~~~ 209 (306)
+++.++.....
T Consensus 78 l~v~~a~~~~~ 88 (96)
T 1x5t_A 78 ITVSYAFKKDS 88 (96)
T ss_dssp CEEEESCCCCC
T ss_pred EEEEEecccCC
Confidence 99998766544
No 204
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=115.36 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=75.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+.++|+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 87 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE------RANGMELDGRRI 87 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHH------HHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHH------HhCCCEECCEEE
Confidence 35679999999999999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ccccCcc
Q psy14686 200 RTHGTHQ 206 (306)
Q Consensus 200 ~v~~~~~ 206 (306)
++.++..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9987643
No 205
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=120.61 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=72.1
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||+.+++++|+++|++||.|.+|++++|+. |.++|||||+|.+.++|++|+ .+++..+.|+.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai-------~~~~~~~~gr~l 81 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFV-------ETPGQKYKETDL 81 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHH-------TSSCCCCTTTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHH-------HcCCCEECCEEE
Confidence 357899999999999999999999999999999999987 999999999999999999999 467888999999
Q ss_pred ccccCcc
Q psy14686 200 RTHGTHQ 206 (306)
Q Consensus 200 ~v~~~~~ 206 (306)
.+.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9886543
No 206
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=6.9e-16 Score=136.67 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccC-CcEEEEee
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEID-GRVVETKR 118 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~-g~~i~v~~ 118 (306)
...++|||+|||.++|+++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++. ++..+. |+.|.|.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 356889999999999999999999999999999998654 58999999999999999997 999999 99999998
Q ss_pred cc
Q psy14686 119 AV 120 (306)
Q Consensus 119 ~~ 120 (306)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 75
No 207
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=3.4e-16 Score=120.13 Aligned_cols=83 Identities=11% Similarity=0.203 Sum_probs=77.1
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|.+++|++++.+++++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ------SMNGFQIGMKRLK 98 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHH------HHTTCEETTEECE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHH------HcCCCEECCEEEE
Confidence 4679999999999999999999999999999999999899999999999999999999997 7899999999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 998765544
No 208
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=121.89 Aligned_cols=78 Identities=24% Similarity=0.451 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCC---CCcceEEEEEecChHHHHHHHHcCCCccCCcEEEE
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVT---KRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v 116 (306)
....++|||+|||+++|+++|+++|++||+|. +.++.++.+ |+++|||||+|.++++|++|++.. ..++|+.+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEe
Confidence 44578999999999999999999999999999 888888766 799999999999999999999873 2367777666
Q ss_pred eec
Q psy14686 117 KRA 119 (306)
Q Consensus 117 ~~~ 119 (306)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 209
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=117.04 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=75.3
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.++++++++.++.++|||||+|.+.++|++|+ .+++..+.|+.+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-------~~~~~~~~g~~l 81 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-------NMHFHDIMGKKV 81 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHH-------HHCCCBSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHH-------HhCCCEECCeEE
Confidence 3568999999999999999999999999999999999999999999999999999999999 468888899999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9987765443
No 210
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=2.4e-16 Score=115.15 Aligned_cols=76 Identities=11% Similarity=0.202 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
...++|||+|||+++|+++|+++|++| +|.++++. +++|||||+|.++++|++|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999984 5789999999999999999997 999999999999998
Q ss_pred cccc
Q psy14686 120 VPRE 123 (306)
Q Consensus 120 ~~~~ 123 (306)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 211
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=116.17 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=74.9
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 89 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVM------KMDGMTIKENIIK 89 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHH------HHTTEESSSCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHH------HhCCCEECCEEEE
Confidence 4679999999999999999999999999999999998 89999999999999999999997 7889999999999
Q ss_pred cccCcccc
Q psy14686 201 THGTHQEA 208 (306)
Q Consensus 201 v~~~~~~~ 208 (306)
+.++....
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 98775543
No 212
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.4e-16 Score=112.59 Aligned_cols=74 Identities=24% Similarity=0.474 Sum_probs=69.1
Q ss_pred ceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccc
Q psy14686 123 EVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTH 202 (306)
Q Consensus 123 ~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~ 202 (306)
+++|+|||..+++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|+ .+++..+.|+.+++.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-------~~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-------EIHFHEINNKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHH-------SSSCCCSSSCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH-------HCCCCEECCEEEEEE
Confidence 4789999999999999999999999999999999989999999999999999999998 578888999998886
Q ss_pred c
Q psy14686 203 G 203 (306)
Q Consensus 203 ~ 203 (306)
.
T Consensus 74 ~ 74 (75)
T 2mss_A 74 K 74 (75)
T ss_dssp C
T ss_pred e
Confidence 4
No 213
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=2.8e-16 Score=116.69 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=76.7
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR------NLNGYQLGSRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHH------HHTTCEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHH------HhCCCeECCeEEE
Confidence 3579999999999999999999999999999999999899999999999999999999997 7899999999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 76 V~~a~~~~~ 84 (96)
T 2x1f_A 76 CGYSSNSDI 84 (96)
T ss_dssp EEECSCSSG
T ss_pred EEEcCCCCC
Confidence 998765543
No 214
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=7.8e-16 Score=124.49 Aligned_cols=84 Identities=12% Similarity=0.259 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCC--cEEE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDG--RVVE 115 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g--~~i~ 115 (306)
.+....+|||+|||+.+|+++|+++|++||+|.+|++..+ +++|||||+|.++++|++|++. +|..+.| +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 3455678999999999999999999999999999998753 3679999999999999999998 9999965 9999
Q ss_pred Eeeccccceee
Q psy14686 116 TKRAVPREVKV 126 (306)
Q Consensus 116 v~~~~~~~~~v 126 (306)
|.+++++.+.+
T Consensus 118 V~~Ak~~~l~v 128 (164)
T 1sjr_A 118 IDFSKLTSLNV 128 (164)
T ss_dssp EEECSSSSCCC
T ss_pred EEEecCCcccc
Confidence 99998876544
No 215
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=117.84 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=75.3
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 96 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME------GLNGQDLMGQPIS 96 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHH------HHTTCBSSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHH------HhcCCEECCcEEE
Confidence 3569999999999999999999999999999999999999999999999999999999997 6888999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
+.++...
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9877554
No 216
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.5e-16 Score=114.29 Aligned_cols=78 Identities=19% Similarity=0.381 Sum_probs=69.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
......++|||+|| ++|+++|+++|++||+|.+|++. +++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34556789999996 89999999999999999999984 4678999999999999999977 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 82 ~~a~~~~ 88 (97)
T 1x5p_A 82 NIARKQP 88 (97)
T ss_dssp ECCSSCC
T ss_pred EECCCCC
Confidence 9987654
No 217
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=5.6e-16 Score=113.16 Aligned_cols=79 Identities=25% Similarity=0.416 Sum_probs=73.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|+ .+++..+.|+.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-------~~~g~~~~g~~l~ 78 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-------ALDESLFRGRQIK 78 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-------GGTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-------hcCCCEECCcEEE
Confidence 467999999999999999999999999999999999989999999999999999999998 6788889999999
Q ss_pred cccCcc
Q psy14686 201 THGTHQ 206 (306)
Q Consensus 201 v~~~~~ 206 (306)
+.++..
T Consensus 79 V~~a~~ 84 (89)
T 3ucg_A 79 VIPKRT 84 (89)
T ss_dssp EEETTT
T ss_pred EEEccC
Confidence 987654
No 218
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=118.39 Aligned_cols=82 Identities=21% Similarity=0.354 Sum_probs=76.0
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
.+++++|+|||..+++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~------~l~g~~i~g~~l 98 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE------QLNGFELAGRPM 98 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHH------HHTTCCSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH------HcCCCEECCEEE
Confidence 44679999999999999999999999999999999999999999999999999999999997 788999999999
Q ss_pred ccccCccc
Q psy14686 200 RTHGTHQE 207 (306)
Q Consensus 200 ~v~~~~~~ 207 (306)
++.++..+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99876543
No 219
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=115.92 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=74.3
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.++++++++.++.++|||||+|.+.++|++|++ .+++..+.|+.+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 88 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR------AINNKQLFGRVI 88 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHH------HTTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH------HcCCCeeCCcEE
Confidence 45689999999999999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ccccC
Q psy14686 200 RTHGT 204 (306)
Q Consensus 200 ~v~~~ 204 (306)
++.++
T Consensus 89 ~v~~a 93 (94)
T 2e5h_A 89 KASIA 93 (94)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 98765
No 220
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-16 Score=118.62 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=77.9
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.++++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 84 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID------NMNESELFGRTI 84 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHH------HHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH------HhCCCEECCcEE
Confidence 35689999999999999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ccccCcccccc
Q psy14686 200 RTHGTHQEAKV 210 (306)
Q Consensus 200 ~v~~~~~~~~~ 210 (306)
++.++......
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99987655443
No 221
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=117.95 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=77.3
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 87 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK------IMDMIKLYGKPI 87 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHH------HSSSCBCSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHH------HhCCCeECCeEE
Confidence 45689999999999999999999999999999999999899999999999999999999997 788999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9998765544
No 222
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-16 Score=116.21 Aligned_cols=78 Identities=26% Similarity=0.517 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEEEeecc
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAV 120 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~v~~~~ 120 (306)
...++|||+|||+++|+++|+++|++||+|.+|+++.+ ++|||||+|.++++|++|+.. ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999998864 689999999999999876443 455689999999987
Q ss_pred ccce
Q psy14686 121 PREV 124 (306)
Q Consensus 121 ~~~~ 124 (306)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 223
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=114.93 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=73.1
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+. .+|+..+.|+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~~ 77 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT------ALKASGVQAQMA 77 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH------HHHHHTCCEESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH------HhcCCeEeeEEE
Confidence 35689999999999999999999999999999999999999999999999999999999997 788888999988
Q ss_pred ccccC
Q psy14686 200 RTHGT 204 (306)
Q Consensus 200 ~v~~~ 204 (306)
++..+
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 87754
No 224
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=115.98 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=73.5
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeE--------EEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIES--------VNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQ 191 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~--------v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~ 191 (306)
....++|+|||..+++++|+++|++||.|.+ +++++++.+|+++|||||+|.+.++|++|+. .+++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~------~l~g 85 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID------WFDG 85 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH------HHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH------HhCC
Confidence 3467999999999999999999999999999 9999999999999999999999999999997 7888
Q ss_pred eEecCcccccccC
Q psy14686 192 EVINGEDHRTHGT 204 (306)
Q Consensus 192 ~~i~g~~i~v~~~ 204 (306)
..+.|+.+++.++
T Consensus 86 ~~~~g~~l~V~~A 98 (99)
T 2la6_A 86 KEFSGNPIKVSFA 98 (99)
T ss_dssp CBSSSSBCEEEEC
T ss_pred CEeCCcEEEEEec
Confidence 8999999988764
No 225
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=118.42 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=76.7
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA------AMDGAELDGRELR 86 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH------HHSSCCBTTBCCE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH------HcCCCEECCcEEE
Confidence 4689999999999999999999999999999999999999999999999999999999997 6889999999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 998765443
No 226
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=118.71 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=76.8
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccC------ceE
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVD------QEV 193 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~------~~~ 193 (306)
..+++||+|||..+++++|+++|++||.|.+|+|++|+.++.++|||||+|.+.++|++|+. .++ +..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~------~~~~~~~~~~~~ 87 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA------AASLEAEGGGLK 87 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHH------HHCTTTTTCCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHH------HhccccccCCcE
Confidence 45689999999999999999999999999999999999999999999999999999999997 666 899
Q ss_pred ecCcccccccCccccc
Q psy14686 194 INGEDHRTHGTHQEAK 209 (306)
Q Consensus 194 i~g~~i~v~~~~~~~~ 209 (306)
+.|+.+++.++.....
T Consensus 88 ~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSSCEEEEECCCCCCC
T ss_pred EcCEEEEEEECCCCcc
Confidence 9999999998765443
No 227
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=114.98 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=75.6
Q ss_pred cccceeecccccccchHHHHHHhcc-CCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceE-ecCc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQ-YGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEV-INGE 197 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~-~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~-i~g~ 197 (306)
...++||+|||..+++++|+++|++ ||.|.+++|++++ +|.++|||||+|.+.++|++|+. .+++.. +.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~~g~ 80 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT------ECQGAVGLGSK 80 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHH------HTTTCCSSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHH------HccCCcccCCE
Confidence 3467999999999999999999999 9999999999998 89999999999999999999997 788888 9999
Q ss_pred ccccccCccccc
Q psy14686 198 DHRTHGTHQEAK 209 (306)
Q Consensus 198 ~i~v~~~~~~~~ 209 (306)
.+++.++.....
T Consensus 81 ~l~v~~a~~~~~ 92 (104)
T 2dhg_A 81 PVRLSVAIPKAS 92 (104)
T ss_dssp CCCCCBCCCCCS
T ss_pred eEEEEEccCCCc
Confidence 999998755443
No 228
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2e-16 Score=118.69 Aligned_cols=84 Identities=20% Similarity=0.384 Sum_probs=77.1
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 84 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM------AMNGKSVDGRQI 84 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHH------HHTTCCTTSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH------HhCCCEECCeEE
Confidence 45689999999999999999999999999999999999899999999999999999999997 788888999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 85 ~v~~a~~~~~ 94 (102)
T 1x5s_A 85 RVDQAGKSSD 94 (102)
T ss_dssp EEEEEECCCC
T ss_pred EEEECCCCCC
Confidence 9998765544
No 229
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=6.2e-16 Score=112.45 Aligned_cols=72 Identities=21% Similarity=0.526 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCcc
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQW----G-------EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEI 109 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~ 109 (306)
...++|||+|||+++|+++|+++|++| | +|.++++.++ +|||||+|.++++|.+|+..++..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 347899999999999999999999999 8 9999998754 6899999999999999995599999
Q ss_pred CCcEEEEee
Q psy14686 110 DGRVVETKR 118 (306)
Q Consensus 110 ~g~~i~v~~ 118 (306)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 230
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=9.4e-17 Score=128.18 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEE--------EEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccC
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDV--------VVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEID 110 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v--------~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~ 110 (306)
....++|||+|||+++|+++|+++|++||.|.++ ++. .+|+++|||||+|.+.++|.+|++. ++..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567899999999999999999999999998764 333 3789999999999999999999997 999999
Q ss_pred CcEEEEeecccc
Q psy14686 111 GRVVETKRAVPR 122 (306)
Q Consensus 111 g~~i~v~~~~~~ 122 (306)
|+.|.|.++.+.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999998654
No 231
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=117.44 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=75.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.+++|++++.+++++|||||+|.+.++|++|+. .+++ .+.|+.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~------~~~~-~~~g~~l 88 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK------DPNP-IIDGRKA 88 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHT------CSSC-EETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH------hCCC-cCCCEEE
Confidence 35679999999999999999999999999999999999999999999999999999999997 6676 7999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
+|.++.....
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 9998765443
No 232
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=5.8e-16 Score=125.43 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=75.2
Q ss_pred ccceeecccccccchHHHHHHhccCC--CeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYG--TIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G--~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
.+++||+|||+.+++++|+++|++|| .|.+++|++|+.+|+++|||||+|.+.++|++||. .+++..+.|+.
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~------~lng~~~~Gr~ 128 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLE------LLPGKVLNGEK 128 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH------HSTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHH------HcCCCEECCeE
Confidence 46899999999999999999999999 99999999999999999999999999999999997 78999999999
Q ss_pred cccccCcc
Q psy14686 199 HRTHGTHQ 206 (306)
Q Consensus 199 i~v~~~~~ 206 (306)
++|.++..
T Consensus 129 l~V~~a~~ 136 (156)
T 3n9u_C 129 VDVRPATR 136 (156)
T ss_dssp CEEEECCH
T ss_pred eEEEEcCC
Confidence 99997754
No 233
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=113.62 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=73.3
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.++++++++. ++++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 87 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIA------LLNGIRLYGRPI 87 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHH------HHTTCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHH------HhCCCEECCCEE
Confidence 356899999999999999999999999999999999976 9999999999999999999997 689999999999
Q ss_pred ccccCc
Q psy14686 200 RTHGTH 205 (306)
Q Consensus 200 ~v~~~~ 205 (306)
++.++.
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 998764
No 234
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.8e-16 Score=116.99 Aligned_cols=83 Identities=22% Similarity=0.373 Sum_probs=76.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR------NLNGREFSGRALR 81 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHH------HSSSBSCSSSCBE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHH------HhCCCeeCCcEEE
Confidence 4689999999999999999999999999999999999899999999999999999999997 7889999999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 997765443
No 235
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.3e-15 Score=114.46 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=74.7
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++|| |.++++++++.+++++|||||+|.+.++|++|+ .+++..+.|+.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-------~l~g~~~~g~~l 85 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-------TYDGALLGDRSL 85 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-------GGTTCEETTEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-------hhCCCeECCeEE
Confidence 356899999999999999999999997 999999999999999999999999999999998 578899999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9998765443
No 236
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=121.47 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=77.8
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIA------GLNGFNILNKRLK 115 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHH------HTTTEECSSCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH------HhCCCEECCeEEE
Confidence 4679999999999999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred cccCcccccc
Q psy14686 201 THGTHQEAKV 210 (306)
Q Consensus 201 v~~~~~~~~~ 210 (306)
+.++......
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9987665444
No 237
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=1.1e-15 Score=115.19 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=74.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC---c
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING---E 197 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g---~ 197 (306)
.+++||+|||..+++++|+++|++||.|.+++|++++ +|.++|||||+|.+.++|++|+. .+++..+.+ +
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~------~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIH------ALHGSQTMPGASS 87 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHH------HHSSCCCCTTCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHH------HHcCCccCCCCCc
Confidence 5679999999999999999999999999999999997 79999999999999999999997 788888887 8
Q ss_pred ccccccCccccc
Q psy14686 198 DHRTHGTHQEAK 209 (306)
Q Consensus 198 ~i~v~~~~~~~~ 209 (306)
.+++.++.....
T Consensus 88 ~l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 SLVVKFADTDKE 99 (105)
T ss_dssp CCEEEESCSSCC
T ss_pred cEEEEECccCcc
Confidence 999987765544
No 238
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=114.93 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=75.7
Q ss_pred ccccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 119 AVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
...+++||+|||..+++++|+++|++||.|..++++++ ++.++|||||+|.+.++|++|+. .+++..+.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~ 84 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVT------EMNGRIVATKP 84 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHH------HHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHH------HhCCCEeCCcE
Confidence 34578999999999999999999999999999999998 79999999999999999999997 78999999999
Q ss_pred cccccCccccc
Q psy14686 199 HRTHGTHQEAK 209 (306)
Q Consensus 199 i~v~~~~~~~~ 209 (306)
+++.++.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 99998766544
No 239
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.5e-16 Score=116.86 Aligned_cols=83 Identities=20% Similarity=0.335 Sum_probs=76.1
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEec-CCCCCceEEEEEEeCCHHHHHHHHhcCcceecc-CceEecCcc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTN-KETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEV-DQEVINGED 198 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d-~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~-~~~~i~g~~ 198 (306)
.++++|+|||..+++++|+++|++||.|..|+++++ +.++.++|||||+|.+.++|++|+. .+ ++..+.|+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~~~~~~~g~~ 88 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN------ALCHSTHLYGRR 88 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHH------HHHTCCBSSSCB
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHH------HhccCCeECCCE
Confidence 467999999999999999999999999999999998 7889999999999999999999997 77 888899999
Q ss_pred cccccCccccc
Q psy14686 199 HRTHGTHQEAK 209 (306)
Q Consensus 199 i~v~~~~~~~~ 209 (306)
+++.++.....
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99998766544
No 240
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=5.6e-16 Score=117.92 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=75.9
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE------ALNGAEIMGQTIQ 99 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHH------HHTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH------HcCCCEECCcEEE
Confidence 4579999999999999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred cccCcccc
Q psy14686 201 THGTHQEA 208 (306)
Q Consensus 201 v~~~~~~~ 208 (306)
+.++....
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99776543
No 241
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=113.81 Aligned_cols=81 Identities=23% Similarity=0.475 Sum_probs=74.2
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCC-ceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGA-KRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~-~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
.+++++|+|||..+++++|+++|++||.|.++++++++.++. ++|||||+|.+.++|++|+. .+++..+.|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK------HMDGGQIDGQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHH------HHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHH------HcCCCeECCeE
Confidence 356899999999999999999999999999999999987766 99999999999999999997 78999999999
Q ss_pred cccccCcc
Q psy14686 199 HRTHGTHQ 206 (306)
Q Consensus 199 i~v~~~~~ 206 (306)
+++..+..
T Consensus 77 l~v~~a~~ 84 (88)
T 4a8x_A 77 ITATAVLA 84 (88)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 99987644
No 242
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1e-16 Score=150.55 Aligned_cols=81 Identities=25% Similarity=0.351 Sum_probs=76.1
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..++||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||. .+|+..|.|+.|.
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~------~lng~~i~gr~i~ 175 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK------HADGKKIDGRRVL 175 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHH------HcCCCEECCEEEE
Confidence 3689999999999999999999999999999999999899999999999999999999997 7899999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
|.++...
T Consensus 176 V~~a~~~ 182 (437)
T 3pgw_S 176 VDVERGR 182 (437)
T ss_pred EEEeCCC
Confidence 9987654
No 243
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=7.6e-16 Score=120.80 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=76.6
Q ss_pred ccccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 119 AVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
...++++|+|||..+++++|+++|++||.|..+++++|+.+|.++|||||+|.+.++|++|+. .+++..+.|+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~------~lng~~i~g~~ 117 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE------RANGMELDGRR 117 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHH------HHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH------HhCCCEECCEE
Confidence 344679999999999999999999999999999999999999999999999999999999997 78999999999
Q ss_pred cccccCccc
Q psy14686 199 HRTHGTHQE 207 (306)
Q Consensus 199 i~v~~~~~~ 207 (306)
+++.++..+
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 999977554
No 244
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.1e-16 Score=111.35 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=69.0
Q ss_pred ceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccc
Q psy14686 123 EVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTH 202 (306)
Q Consensus 123 ~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~ 202 (306)
+++|+|||..+++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|+. .++ ..+.|+.+++.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~------~~~-~~~~g~~l~v~ 74 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA------QSR-HELDSKTIDPK 74 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH------TTT-CCCSSCCCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHH------hCC-CccCCEEEEEE
Confidence 58999999999999999999999999999999999899999999999999999999997 566 77888888876
Q ss_pred cC
Q psy14686 203 GT 204 (306)
Q Consensus 203 ~~ 204 (306)
.+
T Consensus 75 ~a 76 (77)
T 1uaw_A 75 VA 76 (77)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 245
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.1e-15 Score=113.92 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhccCCEEEEEEeeCCCC-CCcceEEEEEecChHHHHHHHHc-CCCccCCcE
Q psy14686 41 ESLRKLFIGGLDY-----RTNDDSLKAFFEQWGEIVDVVVMKDPVT-KRSRGFGFITYSESKMVDEAMSN-RPHEIDGRV 113 (306)
Q Consensus 41 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~ 113 (306)
.++++|+|+|+.. +-++++|++.|++||+|.+|+|++++.+ ++++|||||+|.++++|.+|++. +|..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3468999999952 2378999999999999999999998654 68999999999999999999998 999999999
Q ss_pred EEEeeccccce
Q psy14686 114 VETKRAVPREV 124 (306)
Q Consensus 114 i~v~~~~~~~~ 124 (306)
|.|.++.+...
T Consensus 86 i~v~~a~~~~f 96 (105)
T 2pe8_A 86 VKACFYNLDKF 96 (105)
T ss_dssp CEEEECCHHHH
T ss_pred EEEEEcCHHHh
Confidence 99999876443
No 246
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.4e-15 Score=142.83 Aligned_cols=83 Identities=25% Similarity=0.510 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeec
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRA 119 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~ 119 (306)
...++|||+|||+++|+++|.++|++||+|..|.|+.++.+|+++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999999988999999999999999999999977 999999999999998
Q ss_pred cccc
Q psy14686 120 VPRE 123 (306)
Q Consensus 120 ~~~~ 123 (306)
.++.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7653
No 247
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.3e-16 Score=117.87 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=66.2
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCcc-----CC
Q psy14686 40 PESLRKLFI--GGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEI-----DG 111 (306)
Q Consensus 40 ~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~-----~g 111 (306)
..+.++||| +|||+++|+++|+++|++||+|.+|.++. .||||||+|.++++|++|++. +|..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345688999 77999999999999999999999998864 368999999999999999997 99887 67
Q ss_pred cEEEEeeccc
Q psy14686 112 RVVETKRAVP 121 (306)
Q Consensus 112 ~~i~v~~~~~ 121 (306)
+++.|.++..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 8888887653
No 248
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=4.1e-16 Score=115.36 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=74.1
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
+.+++|+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.++++|++|+. .+++..+.|+.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~------~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI------DLNDRPIGSRKVK 88 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHH------HHTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHH------HhCCCeECCcEEE
Confidence 4689999999999999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred cccCc
Q psy14686 201 THGTH 205 (306)
Q Consensus 201 v~~~~ 205 (306)
+..+.
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 98654
No 249
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=9.8e-16 Score=116.57 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=72.3
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+. .+ +..+.|+.+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~------~~-~~~l~g~~l 96 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA------QS-RHELDSKTI 96 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHH------SS-CEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHH------HC-CCcCCCEEE
Confidence 35689999999999999999999999999999999999999999999999999999999996 33 488899999
Q ss_pred ccccCccc
Q psy14686 200 RTHGTHQE 207 (306)
Q Consensus 200 ~v~~~~~~ 207 (306)
++..+...
T Consensus 97 ~V~~a~~~ 104 (109)
T 2rs2_A 97 DPKVAFPR 104 (109)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 98876544
No 250
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=4.5e-16 Score=117.62 Aligned_cols=84 Identities=12% Similarity=0.234 Sum_probs=75.2
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe---cC
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI---NG 196 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i---~g 196 (306)
..+++||+|||..+++++|+++|++||.|.++++++|+.+|.++|||||+|.+.++|++|+. .+++..+ .|
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~------~l~g~~~~~~~g 85 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS------ALHEQKTLPGMN 85 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH------HHTTTCCCTTCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH------HhcCCcccCCCC
Confidence 34679999999999999999999999999999999999999999999999999999999997 6777766 78
Q ss_pred cccccccCccccc
Q psy14686 197 EDHRTHGTHQEAK 209 (306)
Q Consensus 197 ~~i~v~~~~~~~~ 209 (306)
+.+++.++.....
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 8999987765443
No 251
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=112.30 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=72.9
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|++|+. ++..+.|+.++
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--------~~~~~~g~~l~ 86 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--------QRHMIDGRWCD 86 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--------SCEEETTEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--------cCCeeCCeEEE
Confidence 4679999999999999999999999999999999999999999999999999999999996 24578899999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 987765433
No 252
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=116.60 Aligned_cols=82 Identities=16% Similarity=0.309 Sum_probs=75.0
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|..++|++++.++.++|||||+|.+.++|++||. . ++..+.|+.++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~------~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA------A-RPHSIDGRVVE 99 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT------S-CSEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHH------h-CCcEECCEEEE
Confidence 3679999999999999999999999999999999999999999999999999999999995 4 88899999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 997765443
No 253
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=2.4e-15 Score=117.20 Aligned_cols=83 Identities=13% Similarity=0.312 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceE-EEEEecChHHHHHHHHc-CCCccCC--cEE
Q psy14686 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGF-GFITYSESKMVDEAMSN-RPHEIDG--RVV 114 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~-afV~f~~~~~a~~Al~~-~~~~~~g--~~i 114 (306)
.+..--.|||+||++.+|+++|+++|++||+|.+|++..+ ++|| |||+|.++++|++|++. +|..+.| +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3445567889999999999999999999999999998763 3677 99999999999999998 9999988 899
Q ss_pred EEeeccccceee
Q psy14686 115 ETKRAVPREVKV 126 (306)
Q Consensus 115 ~v~~~~~~~~~v 126 (306)
+|.++++..+.+
T Consensus 99 rI~~ak~~~l~v 110 (130)
T 3zzy_A 99 RIDFSKLTSLNV 110 (130)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEecCCCceeE
Confidence 999998876544
No 254
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=3.1e-16 Score=114.90 Aligned_cols=81 Identities=20% Similarity=0.416 Sum_probs=72.2
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRT 201 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v 201 (306)
++++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.+ |++|+. .+++..+.|+.+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~------~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIA------KLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHH------TSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHH------HhCCCEECCeEEEE
Confidence 46899999999999999999999999999999999999999999999999999 999997 78999999999999
Q ss_pred ccCccccc
Q psy14686 202 HGTHQEAK 209 (306)
Q Consensus 202 ~~~~~~~~ 209 (306)
..+.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2ki2_A 75 TEANPKKS 82 (90)
T ss_dssp EEC-----
T ss_pred EEcCCCCC
Confidence 97765433
No 255
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=7.6e-16 Score=118.32 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcE-----E
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRV-----V 114 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~-----i 114 (306)
...++|||+|||+++|+++|+++|++||+|.+|.++.+ |||||+|.+.++|++||+. ++..+.|+. +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999865 7999999999999999997 999999988 6
Q ss_pred EEeeccc
Q psy14686 115 ETKRAVP 121 (306)
Q Consensus 115 ~v~~~~~ 121 (306)
+|....+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6666544
No 256
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=1e-15 Score=125.19 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=75.8
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRT 201 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v 201 (306)
.++||+|||..+++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|++||. .+++..|.|+.+.|
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE------ALNGAEIMGQTIQV 146 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHH------HHTTCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHH------HhCCCEECCEEEEE
Confidence 459999999999999999999999999999999999999999999999999999999997 78999999999999
Q ss_pred ccCccccc
Q psy14686 202 HGTHQEAK 209 (306)
Q Consensus 202 ~~~~~~~~ 209 (306)
.++.....
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 98765544
No 257
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.2e-16 Score=115.57 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=70.6
Q ss_pred ccccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 119 AVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
....+++|+|||+.+++++|+++|++|| +.+|+|++|+ +|+++|||||+|++.++|++|| .+++..+.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-------~~~~~~~~gr~ 83 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-------AKDKANMQHRY 83 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-------TTSSCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-------HhCCCeECCcE
Confidence 3456899999999999999999999999 4599999997 8999999999999999999999 45788889999
Q ss_pred cccccCccc
Q psy14686 199 HRTHGTHQE 207 (306)
Q Consensus 199 i~v~~~~~~ 207 (306)
+++..+...
T Consensus 84 i~V~~~~~~ 92 (102)
T 1wez_A 84 VELFLNSTA 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 988765443
No 258
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.7e-16 Score=117.45 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=77.1
Q ss_pred cccceeecccccccchHHHHHHhccCCCee--------EEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIE--------SVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQ 191 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~--------~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~ 191 (306)
..+++||+|||..+++++|+++|++||.|. .++|++++.+++++|||||+|.+.++|++|+. .+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~------~l~g 87 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE------WFDG 87 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH------HHTT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH------HcCC
Confidence 456899999999999999999999999999 69999998899999999999999999999997 7899
Q ss_pred eEecCcccccccCccccc
Q psy14686 192 EVINGEDHRTHGTHQEAK 209 (306)
Q Consensus 192 ~~i~g~~i~v~~~~~~~~ 209 (306)
..+.|+.+++.++.....
T Consensus 88 ~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CEETTEECEEECSSCCCC
T ss_pred CccCCCEEEEEECCCCCC
Confidence 999999999998766544
No 259
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.4e-16 Score=115.05 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=75.0
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
.+.+++|+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~------~l~g~~~~g~~l 87 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI------DLNDRPIGSRKV 87 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHH------HTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHH------HhCCCeeCCeEE
Confidence 34679999999999999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ccccCcc
Q psy14686 200 RTHGTHQ 206 (306)
Q Consensus 200 ~v~~~~~ 206 (306)
++.++..
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 9987653
No 260
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=5.9e-15 Score=114.44 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceE-EEEEecChHHHHHHHHc-CCCccCC--cEEEE
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGF-GFITYSESKMVDEAMSN-RPHEIDG--RVVET 116 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~-afV~f~~~~~a~~Al~~-~~~~~~g--~~i~v 116 (306)
..-..|||+|||+.+|+++|+++|++||+|.+|++... .|| |||+|.+.++|.+|++. +|..+.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33445789999999999999999999999999999752 276 99999999999999998 9999987 69999
Q ss_pred eeccccceeec
Q psy14686 117 KRAVPREVKVR 127 (306)
Q Consensus 117 ~~~~~~~~~v~ 127 (306)
.++.++.+.+.
T Consensus 97 ~~Ak~~~l~v~ 107 (124)
T 2e5i_A 97 EYARPTRLNVI 107 (124)
T ss_dssp ECCSCSCCCCS
T ss_pred EEecCCcceee
Confidence 99988766543
No 261
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.7e-15 Score=114.59 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=73.3
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
...+++|+|||..+++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 100 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK------QYNGVPLDGRPM 100 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHH------HHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHH------HhCCCEeCCcEE
Confidence 35679999999999999999999999999999999998 89999999999999999999997 789999999999
Q ss_pred ccccCc
Q psy14686 200 RTHGTH 205 (306)
Q Consensus 200 ~v~~~~ 205 (306)
++.++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988653
No 262
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=109.97 Aligned_cols=72 Identities=19% Similarity=0.318 Sum_probs=65.9
Q ss_pred cceeeccccccc------chHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEec
Q psy14686 122 REVKVRRVTKVQ------IALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN 195 (306)
Q Consensus 122 ~~~~v~nl~~~~------~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~ 195 (306)
++++|+|||..+ ++++|+++|++||.|.+++++ +.+|+++|||||+|.+.++|++|+. .+|+..+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~------~lng~~~~ 73 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVK------NADGYKLD 73 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHT------TSSSCCCS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHH------HhcCcccC
Confidence 468999999999 779999999999999999987 3579999999999999999999997 78999999
Q ss_pred Cc-cccc
Q psy14686 196 GE-DHRT 201 (306)
Q Consensus 196 g~-~i~v 201 (306)
|+ .+++
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 98 7776
No 263
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=2.8e-16 Score=124.59 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=70.7
Q ss_pred eEEEEEecChHHHHHHHHcCCCccCCcEE---------EEeeccccceeecccccccchHHHHHHhccCCCeeEEEEEec
Q psy14686 86 GFGFITYSESKMVDEAMSNRPHEIDGRVV---------ETKRAVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTN 156 (306)
Q Consensus 86 g~afV~f~~~~~a~~Al~~~~~~~~g~~i---------~v~~~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d 156 (306)
|+||.+|.-++.+..++........|... ........+++|+|||+.+++++|+++|++|| |.+|+|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d 80 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG 80 (139)
T ss_dssp -------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC
Confidence 57788887777766666542222222211 12223456799999999999999999999999 779999999
Q ss_pred CCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCccc
Q psy14686 157 KETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQE 207 (306)
Q Consensus 157 ~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~~ 207 (306)
+. |+++|||||+|++.++|++|| .+++..+.++.+.|..+...
T Consensus 81 ~~-g~srGfaFV~F~~~e~A~~Al-------~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 81 PD-GRVTGEADVEFATHEEAVAAM-------SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp SS-SCSSCCCEEECSHHHHHHHHT-------TCCSCSSSSCCCCCEECCCS
T ss_pred CC-CCCceEEEEEeCCHHHHHHHH-------hhCCCEECCEEEEEEECCCC
Confidence 76 999999999999999999998 56788889999988765543
No 264
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=3.1e-16 Score=110.78 Aligned_cols=74 Identities=23% Similarity=0.410 Sum_probs=67.9
Q ss_pred ceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccc
Q psy14686 123 EVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTH 202 (306)
Q Consensus 123 ~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~ 202 (306)
+++|+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+. .++..+.|+.+++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-------~~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-------KKYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-------TSSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-------hCCCeECCEEEEEE
Confidence 47999999999999999999999999999999999999999999999999999999994 46677888888876
Q ss_pred c
Q psy14686 203 G 203 (306)
Q Consensus 203 ~ 203 (306)
.
T Consensus 74 ~ 74 (75)
T 1iqt_A 74 V 74 (75)
T ss_dssp E
T ss_pred E
Confidence 4
No 265
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=7.7e-16 Score=118.65 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=73.3
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|+. .+|+..+.|+.++
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l~ 113 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK------AMNGFQVGTKRLK 113 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHH------HCCCCEETTEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHH------HcCCCEECCEEEE
Confidence 4679999999999999999999999999999999999899999999999999999999997 7899999999999
Q ss_pred cccC
Q psy14686 201 THGT 204 (306)
Q Consensus 201 v~~~ 204 (306)
+.++
T Consensus 114 V~~a 117 (118)
T 2khc_A 114 VQLK 117 (118)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8764
No 266
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=4.8e-16 Score=122.82 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=72.2
Q ss_pred cccceeecccccccchHHHHHHhccCCC---eeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGT---IESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~---I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
...+++|+|||+.+++++|+++|++||. |.+|+|++|+. |+++|||||+|.+.++|++|| .+++..+.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al-------~~~g~~l~g 114 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMAL-------KKDRESMGH 114 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHH-------TTTEEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-------hcCCCEECC
Confidence 3467999999999999999999999999 89999999987 999999999999999999998 578899999
Q ss_pred cccccccCcc
Q psy14686 197 EDHRTHGTHQ 206 (306)
Q Consensus 197 ~~i~v~~~~~ 206 (306)
+.++|..+..
T Consensus 115 r~i~V~~a~~ 124 (136)
T 2hgl_A 115 RYIEVFKSHR 124 (136)
T ss_dssp SEEEEEECCH
T ss_pred EEEEEEECCh
Confidence 9999986643
No 267
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=114.37 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=68.5
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
...++||+|||+.+++++|+++|++||.|.+++|+++ ||||||+|++.++|++|+... ..++..+.|+.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l----~~~~~~l~Gr~l 84 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYY----TSVTPVLRGQPI 84 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH----TTSCCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHh----ccCCceECCEEE
Confidence 4568999999999999999999999999999999864 689999999999999999621 234578999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
+|.++..+..
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9998765443
No 268
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=114.34 Aligned_cols=82 Identities=16% Similarity=0.284 Sum_probs=74.5
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCC-CCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKET-GAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~-g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
.+.++||+|||..+++++|+++|++|| |.+|+|++++.+ |+++|||||+|.+.++|++|+ .+++..+.|+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-------~l~g~~~~g~~ 85 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-------SLNEESLGNKR 85 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-------GGGTCEETTEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-------hcCCCEeCCcE
Confidence 356899999999999999999999999 999999999887 999999999999999999998 57888899999
Q ss_pred cccccCccccc
Q psy14686 199 HRTHGTHQEAK 209 (306)
Q Consensus 199 i~v~~~~~~~~ 209 (306)
+++.++.....
T Consensus 86 l~V~~a~~~~~ 96 (104)
T 1wi8_A 86 IRVDVADQAQD 96 (104)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCCCC
Confidence 99998765543
No 269
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=6e-16 Score=121.69 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=74.1
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeE--EEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCce----Ee
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIES--VNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQE----VI 194 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~--v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~----~i 194 (306)
.+++||+|||+.+++++|+++|++||.|.. |+|++|+.+|++||||||+|.+. +|++|+. .+++. .+
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~------~l~g~~~~~~~ 95 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQ------ILQALHPPLTI 95 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHH------HHTTCCCSCCG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHH------HhcCCCCCccC
Confidence 467999999999999999999999999977 99999999999999999999999 9999997 78888 89
Q ss_pred cCcccccccCccc
Q psy14686 195 NGEDHRTHGTHQE 207 (306)
Q Consensus 195 ~g~~i~v~~~~~~ 207 (306)
.|+.++|.++...
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 9999999977554
No 270
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=113.12 Aligned_cols=82 Identities=11% Similarity=0.131 Sum_probs=74.8
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|.+++|++++ ++.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 87 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAIS------MFNGQLLFDRPMH 87 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHH------HHTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHH------HhCCCEeCCCEEE
Confidence 4679999999999999999999999999999999997 59999999999999999999997 7899999999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 998755433
No 271
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=3.3e-15 Score=109.78 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=73.3
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.+++++++ +|.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~------~l~g~~~~g~~l 78 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACR------MMNGMKLSGREI 78 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHH------HHTTCCBTTBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHH------HhCCCEECCcEE
Confidence 3567999999999999999999999999999999984 68999999999999999999997 788999999999
Q ss_pred ccccCcccc
Q psy14686 200 RTHGTHQEA 208 (306)
Q Consensus 200 ~v~~~~~~~ 208 (306)
++.++....
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 998775543
No 272
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=3.3e-15 Score=116.13 Aligned_cols=79 Identities=27% Similarity=0.443 Sum_probs=73.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+ .+++..+.|+.++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-------~l~g~~~~g~~l~ 108 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-------AMDETVFRGRTIK 108 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-------TTTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-------hcCCCeECCeEEE
Confidence 357999999999999999999999999999999999989999999999999999999998 6788889999999
Q ss_pred cccCcc
Q psy14686 201 THGTHQ 206 (306)
Q Consensus 201 v~~~~~ 206 (306)
|.++..
T Consensus 109 V~~a~~ 114 (124)
T 2jwn_A 109 VLPKRT 114 (124)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 987654
No 273
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=115.71 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=75.3
Q ss_pred ccccceeecccccccchHHHH---HHhccCCCeeEEEEEecCCCC---CceEEEEEEeCCHHHHHHHHhcCcceeccCce
Q psy14686 119 AVPREVKVRRVTKVQIALEQM---DYFGQYGTIESVNMVTNKETG---AKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQE 192 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~---~~F~~~G~I~~v~v~~d~~~g---~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~ 192 (306)
...+++||+|||+.+++++|+ ++|++||.|.++++++++.++ +++|||||+|.+.++|++|+. .+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~------~lng~ 86 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQ------CVNNV 86 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHH------HHTTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHH------HhCCC
Confidence 345789999999999999999 999999999999999987654 566999999999999999997 78999
Q ss_pred EecCcccccccCcccc
Q psy14686 193 VINGEDHRTHGTHQEA 208 (306)
Q Consensus 193 ~i~g~~i~v~~~~~~~ 208 (306)
.+.|+.+++.++..+.
T Consensus 87 ~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 87 VVDGRTLKASLGTTKY 102 (111)
T ss_dssp EETTEEEEEESCCCCS
T ss_pred EECCEEEEEEeccccc
Confidence 9999999999876654
No 274
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=111.91 Aligned_cols=83 Identities=19% Similarity=0.412 Sum_probs=74.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.+++|++++. .++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 85 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRARE------KLHGTVVEGRKI 85 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHH------HHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHH------HhCCCEECCEEE
Confidence 356899999999999999999999999999999998864 489999999999999999997 789999999999
Q ss_pred ccccCcccccc
Q psy14686 200 RTHGTHQEAKV 210 (306)
Q Consensus 200 ~v~~~~~~~~~ 210 (306)
++.++......
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99987665443
No 275
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=114.59 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=71.9
Q ss_pred ccccceeecccccccchHHHHHHhccCCCeeEEEEEecC-CCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCc
Q psy14686 119 AVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNK-ETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGE 197 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~-~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~ 197 (306)
...+++||+|||..+++++|+++|++|| |.++++++++ .+|+++|||||+|.+.++|++|+ .+++..+.|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-------~l~g~~~~g~ 88 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-------SLNEESLGNR 88 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-------HTTTCCBTTB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-------hcCCCEECCe
Confidence 3457899999999999999999999999 9999999998 68999999999999999999998 5788889999
Q ss_pred ccccccCccc
Q psy14686 198 DHRTHGTHQE 207 (306)
Q Consensus 198 ~i~v~~~~~~ 207 (306)
.+++..+...
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999876543
No 276
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=108.44 Aligned_cols=74 Identities=11% Similarity=0.193 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCCHHH----HHHHhhcc-CCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEE
Q psy14686 42 SLRKLFIGGLDYRTNDDS----LKAFFEQW-GEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVE 115 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~ 115 (306)
..+.|||+|||+.+++++ |+++|++| |+|.+| +| |+|||.|.+.++|++|++. +|..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344499999999999988 55899999 599998 34 8999999999999999987 99999999999
Q ss_pred Eeecccccee
Q psy14686 116 TKRAVPREVK 125 (306)
Q Consensus 116 v~~~~~~~~~ 125 (306)
|.++..+...
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9998876543
No 277
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=112.49 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=74.2
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.+|++++++. .++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 85 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALA------AMNGRKILGKEV 85 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHH------HHTTEEETTEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHH------HhCCCCcCCCeE
Confidence 356899999999999999999999999999999999864 478999999999999999997 789999999999
Q ss_pred ccccCcccccc
Q psy14686 200 RTHGTHQEAKV 210 (306)
Q Consensus 200 ~v~~~~~~~~~ 210 (306)
++.++......
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99987665443
No 278
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=112.67 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=72.5
Q ss_pred cccceeecccccccchHHHH----HHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEec
Q psy14686 120 VPREVKVRRVTKVQIALEQM----DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN 195 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~----~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~ 195 (306)
...++||+|||..+++++|+ ++|++||.|.++++++|+.+ +|||||+|.+.++|++|+. .+|+..+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~------~l~g~~~~ 78 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVN------SLHRYKIG 78 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHH------HHTTEEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHH------HhCCCEEC
Confidence 34679999999999999999 99999999999999998765 8899999999999999997 78999999
Q ss_pred CcccccccCcccc
Q psy14686 196 GEDHRTHGTHQEA 208 (306)
Q Consensus 196 g~~i~v~~~~~~~ 208 (306)
|+.+++.++....
T Consensus 79 gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 79 SKKILVSLATGAS 91 (96)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEEcCCCC
Confidence 9999999775543
No 279
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=113.74 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=74.6
Q ss_pred ccceeecccccccchHHHHHHhccCCC-eeEEEEE-ecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccC--ceEecC
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGT-IESVNMV-TNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVD--QEVING 196 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~-I~~v~v~-~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~--~~~i~g 196 (306)
.+++||+|||..+++++|+++|++||. |.++.++ .++.+|.++|||||+|.+.++|++|+. .++ +..+.|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~------~l~~g~~~~~g 81 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR------KLMPGRIQLWG 81 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHT------TTTTCCSCBTT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHH------HhhCCCceecC
Confidence 467999999999999999999999998 9999998 888889999999999999999999997 665 578899
Q ss_pred cccccccCccccc
Q psy14686 197 EDHRTHGTHQEAK 209 (306)
Q Consensus 197 ~~i~v~~~~~~~~ 209 (306)
+.+++.++.....
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999998765544
No 280
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=4.6e-15 Score=120.05 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=77.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|++||. .+++..+.|+.+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l 111 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR------YINGTRLDDRII 111 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH------HTTTSEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH------HhCCCEECCeEE
Confidence 34689999999999999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
+|.++.....
T Consensus 112 ~V~~a~~~~~ 121 (156)
T 1h2v_Z 112 RTDWDAGFKE 121 (156)
T ss_dssp EEEEESCCCT
T ss_pred EEEECCCCCC
Confidence 9998765433
No 281
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=108.72 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=72.8
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
...+++|+|||..+++++|+++|++| .|.+++++++ .+|+++|||||+|.+.++|++|+ .+++..+.|+.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~-------~~~g~~~~gr~i 79 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQAL-------KCNREYMGGRYI 79 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHH-------HSCSEEETTEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHH-------HhCCceeCCcEE
Confidence 35679999999999999999999999 9999999999 78999999999999999999999 478899999999
Q ss_pred ccccCcccc
Q psy14686 200 RTHGTHQEA 208 (306)
Q Consensus 200 ~v~~~~~~~ 208 (306)
++..+..++
T Consensus 80 ~v~~a~~~~ 88 (91)
T 2dgw_A 80 EVFREKSGP 88 (91)
T ss_dssp EEEEESSCC
T ss_pred EEEECCcCC
Confidence 998765543
No 282
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=3.7e-15 Score=115.54 Aligned_cols=78 Identities=19% Similarity=0.381 Sum_probs=69.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+...++|||+|| ++|+++|+++|++||+|.+|.+. +++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44557899999996 69999999999999999999986 4678999999999999999977 999999999999
Q ss_pred eeccccc
Q psy14686 117 KRAVPRE 123 (306)
Q Consensus 117 ~~~~~~~ 123 (306)
.++.++.
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9987653
No 283
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=1.8e-15 Score=117.89 Aligned_cols=84 Identities=15% Similarity=0.300 Sum_probs=77.2
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..++||+|||..+++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++|+. .+++..+.|+.+.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME------GLNGQDLMGQPIS 95 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHH------HHTTCBSSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH------HhCCCeeCCeEEE
Confidence 4579999999999999999999999999999999999899999999999999999999997 7899999999999
Q ss_pred cccCcccccc
Q psy14686 201 THGTHQEAKV 210 (306)
Q Consensus 201 v~~~~~~~~~ 210 (306)
|.++......
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9987655443
No 284
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=117.10 Aligned_cols=81 Identities=16% Similarity=0.332 Sum_probs=74.2
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|..++|++|+.+|.++|||||+|.+.++|++|+ .+++..+.|+.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-------~l~g~~~~g~~l~ 97 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-------GLTGQRLLGVPII 97 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-------HHTTEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-------HcCCCEeCCeEEE
Confidence 357999999999999999999999999999999999999999999999999999999998 5788889999999
Q ss_pred cccCcccc
Q psy14686 201 THGTHQEA 208 (306)
Q Consensus 201 v~~~~~~~ 208 (306)
|.++....
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 98765443
No 285
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=113.05 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=70.1
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeE-EEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIES-VNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~-v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++|+|||+.+++++|+++|++||.|.. ++|+.+ .+|+++|||||+|.++++|++||. . ++..+.|+.+
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~------~-~~~~~~gr~i 86 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALK------K-HKERIGHRYI 86 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHT------T-TTCCSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHH------h-CcchhCCcEE
Confidence 467999999999999999999999999987 889888 689999999999999999999995 3 7888899998
Q ss_pred ccccCcc
Q psy14686 200 RTHGTHQ 206 (306)
Q Consensus 200 ~v~~~~~ 206 (306)
.+..+..
T Consensus 87 ~v~~~~~ 93 (104)
T 1wg5_A 87 EIFKSSR 93 (104)
T ss_dssp EEEEECT
T ss_pred EEEECCH
Confidence 8876543
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=118.60 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=73.2
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 135 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID------NMNESELFGRTI 135 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHH------HSTEEEETTEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHH------HhCCCEECCEEE
Confidence 35679999999999999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ccccC
Q psy14686 200 RTHGT 204 (306)
Q Consensus 200 ~v~~~ 204 (306)
++.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 88753
No 287
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=1.6e-15 Score=109.27 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=67.1
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRT 201 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v 201 (306)
.-++|+||++.++|++|+++|.+||+|.++++.. +||||||+|.++++|++|++ .+|+..+.|+.|++
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~------~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQM------ALNNCVLANTTIFA 75 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHH------HHTTEEETTEEEEE
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHH------HhcCCEECCcEEEE
Confidence 4588999999999999999999999999999864 68999999999999999998 89999999999999
Q ss_pred ccCc
Q psy14686 202 HGTH 205 (306)
Q Consensus 202 ~~~~ 205 (306)
..+.
T Consensus 76 ~~A~ 79 (89)
T 2wbr_A 76 ESPS 79 (89)
T ss_dssp ECCC
T ss_pred EECC
Confidence 9773
No 288
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=116.55 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=73.5
Q ss_pred cccceeecccccccchHHHHHHhccCCCe-eEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTI-ESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I-~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
..+++||+|||+.+++++|+++|++||.| .+|+|++|+ +|+++|||||+|.+.++|++||. .++..+.|+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-------~~~~~~~gr~ 85 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSER-------LHRKKLNGRE 85 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGG-------GCSEEETTEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHH-------hCCCccCCeE
Confidence 35679999999999999999999999999 899999998 89999999999999999999995 4889999999
Q ss_pred cccccCcccc
Q psy14686 199 HRTHGTHQEA 208 (306)
Q Consensus 199 i~v~~~~~~~ 208 (306)
+.+.++....
T Consensus 86 i~v~~a~~~~ 95 (114)
T 2cpy_A 86 AFVHVVTLED 95 (114)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9998765543
No 289
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.9e-15 Score=113.89 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=70.5
Q ss_pred ccceeeccc----ccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCC----HHH----HHHHHhcCcceec
Q psy14686 121 PREVKVRRV----TKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDD----YDV----VDKIVLDKVVVLE 188 (306)
Q Consensus 121 ~~~~~v~nl----~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~----~e~----A~~Al~~~~~~~~ 188 (306)
+.+++|+|| |+.+++++|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+.. ..
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~----~~ 77 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRK----HE 77 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHH----TT
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHH----hh
Confidence 467999999 9999999999999999999999999999999999999999996 433 7778742 25
Q ss_pred cCceEecCcccccccCcc
Q psy14686 189 VDQEVINGEDHRTHGTHQ 206 (306)
Q Consensus 189 ~~~~~i~g~~i~v~~~~~ 206 (306)
+++..|.|+.++|.+...
T Consensus 78 lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 78 SSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TTCEEETTEEEEEEECCT
T ss_pred hcCCeecCcEEEEEECcc
Confidence 799999999999986543
No 290
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=112.53 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=71.6
Q ss_pred ccceeeccccccc------chHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe
Q psy14686 121 PREVKVRRVTKVQ------IALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI 194 (306)
Q Consensus 121 ~~~~~v~nl~~~~------~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i 194 (306)
.+++||+|||..+ ++++|+++|++||.|.+++++ +.+|+++|||||+|.+.++|++|+. .+|+..+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~------~l~g~~~ 86 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVK------NADGYKL 86 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHH------HCSSEEC
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHH------HhCCccc
Confidence 4679999999999 789999999999999999998 3679999999999999999999997 7899999
Q ss_pred cCc-ccccccCccc
Q psy14686 195 NGE-DHRTHGTHQE 207 (306)
Q Consensus 195 ~g~-~i~v~~~~~~ 207 (306)
.|+ .+++.++...
T Consensus 87 ~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 DKQHTFRVNLFTDF 100 (105)
T ss_dssp STTCEEEEECSCCC
T ss_pred CCCceEEEEEcchH
Confidence 998 9999876543
No 291
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=5.6e-15 Score=127.14 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=74.9
Q ss_pred cccceeecccccccchHHHHHHhccCC--CeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYG--TIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGE 197 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G--~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~ 197 (306)
...++||+||++.+++++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|++||. .+++..|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~------~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD------LLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHT------TSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHH------HcCCCeECCE
Confidence 346799999999999999999999999 99999999999999999999999999999999997 7899999999
Q ss_pred ccccccCcc
Q psy14686 198 DHRTHGTHQ 206 (306)
Q Consensus 198 ~i~v~~~~~ 206 (306)
.++|.++..
T Consensus 141 ~l~V~~a~~ 149 (229)
T 3q2s_C 141 NPVVTPVNK 149 (229)
T ss_dssp CCEEEECCH
T ss_pred EeEEEECCC
Confidence 999998654
No 292
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=3.9e-15 Score=114.88 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=71.5
Q ss_pred ccceeecccccccchHHHHHHhccCCC---eeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGT---IESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGE 197 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~---I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~ 197 (306)
..+++|+|||+.+++++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++|| .+++..+.|+
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al-------~~~g~~~~gr 88 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLAL-------KKDRESMGHR 88 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHG-------GGTTEEETTE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHH-------hcCCCeECCe
Confidence 467999999999999999999999999 89999999986 999999999999999999998 5688999999
Q ss_pred ccccccCcc
Q psy14686 198 DHRTHGTHQ 206 (306)
Q Consensus 198 ~i~v~~~~~ 206 (306)
.+++..+..
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999986643
No 293
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.5e-15 Score=112.77 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=69.0
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRT 201 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v 201 (306)
.+++|+|||+.+++++|+++|+.| .|.+|+|+.|+. |+++|||||+|.++++|++|| .+++..+.|+.+.+
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-------~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-------KRNRMLMIQRYVEV 87 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-------HTTTEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-------hcCCCeECCeEEEE
Confidence 579999999999999999999999 899999999975 999999999999999999998 57888999999988
Q ss_pred ccCc
Q psy14686 202 HGTH 205 (306)
Q Consensus 202 ~~~~ 205 (306)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 7554
No 294
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=6.7e-15 Score=114.42 Aligned_cols=80 Identities=13% Similarity=0.173 Sum_probs=74.2
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..+++|+|||..+++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMK------QYKGVPLDGRPMD 107 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHH------HHTTEESSSCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH------HcCCCEECCcEEE
Confidence 4579999999999999999999999999999999998 89999999999999999999997 7899999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
+.++...
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 9876543
No 295
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=111.60 Aligned_cols=71 Identities=13% Similarity=0.311 Sum_probs=64.8
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGE 197 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~ 197 (306)
...++||+|||..+++++|+++|++||.|.+++|++++ ++.++|||||+|.+.++|++|+. .+|+..+.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~------~l~g~~~~~~ 94 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIG------HFNGKFIKTP 94 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHH------HHBTCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHH------HhCCCEEcCC
Confidence 34679999999999999999999999999999999998 89999999999999999999997 6778777443
No 296
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=5.7e-15 Score=110.72 Aligned_cols=77 Identities=27% Similarity=0.481 Sum_probs=69.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
++++||+|||..+++++|+++|++||.|.++++++++ +|.++|||||+|++.++|++|+ . ++..+.|+.+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai-------~-~~~~~~g~~l~ 79 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIV-------E-SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHT-------T-CCCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHH-------h-CCCeECCEEEE
Confidence 4679999999999999999999999999999999998 8999999999999999999998 4 67778888888
Q ss_pred cccCcc
Q psy14686 201 THGTHQ 206 (306)
Q Consensus 201 v~~~~~ 206 (306)
+..+..
T Consensus 80 v~~a~~ 85 (102)
T 2xs2_A 80 LGPAIR 85 (102)
T ss_dssp EEEEEE
T ss_pred EEECCc
Confidence 765543
No 297
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.3e-15 Score=112.45 Aligned_cols=79 Identities=20% Similarity=0.432 Sum_probs=72.0
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|.++++++++ +.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l~ 100 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRARE------KLHGTVVEGRKIE 100 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHH------HHTTCEETTEECE
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHH------HcCCCEECCEEEE
Confidence 4679999999999999999999999999999999885 4589999999999999999997 7899999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
+.++..+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9876543
No 298
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=110.17 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=72.3
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|..++++.+ +.++|||||+|++.++|++|+. .+++..+.|+.+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 91 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVY------GRDGYDYDGYRL 91 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHH------HHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHH------HcCCCEECCeEE
Confidence 3468999999999999999999999999999999654 5689999999999999999997 788999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
+|.++.....
T Consensus 92 ~V~~a~~~~~ 101 (109)
T 1x4a_A 92 RVEFPRSGRG 101 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEEcccCCC
Confidence 9998765443
No 299
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.3e-15 Score=109.48 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=68.5
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+.+||+|||..+++++|+++|++||.|.++.++++ ||||||+|++.++|++|+... .+++..+.|+.++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l----~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYY----SAVTPHLRNQPIY 84 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH----HHSCCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHh----ccCCceECCcEEE
Confidence 467999999999999999999999999999998764 789999999999999999722 3457789999999
Q ss_pred cccCcccccc
Q psy14686 201 THGTHQEAKV 210 (306)
Q Consensus 201 v~~~~~~~~~ 210 (306)
+.++......
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9987655443
No 300
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.3e-15 Score=114.00 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=68.5
Q ss_pred ccceeecccccccchHHHHHHhccCCCe----eEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTI----ESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I----~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
..+++|+|||+.+++++|+++|++||.| ..|+|+.|+ +|+++|||||+|++.++|++||. .++..+.+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~-------~~~~~l~g 94 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALR-------KHKDLLGK 94 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHT-------TTTEESSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-------hCCCeeCC
Confidence 4679999999999999999999999975 689999984 79999999999999999999995 37788888
Q ss_pred cccccccCc
Q psy14686 197 EDHRTHGTH 205 (306)
Q Consensus 197 ~~i~v~~~~ 205 (306)
+.+.+..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 888887554
No 301
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.1e-15 Score=116.43 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=72.3
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..++||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|++|| .+++..+.|+.+.
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al-------~~~g~~~~gr~i~ 97 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL-------CRHKQYMGNRFIQ 97 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHH-------TSCSBCSTTSCBE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHH-------HhCCCeECCcEEE
Confidence 467999999999999999999999999998777777789999999999999999999999 5788999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
|..+...
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9876543
No 302
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.53 E-value=1.6e-15 Score=116.28 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=72.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.+++++++ +.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 77 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVD------HLSGFNVSNRYL 77 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHH------HHTTCBSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHH------HcCCCEECCeEE
Confidence 4568999999999999999999999999999999875 5669999999999999999997 689999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 78 ~v~~a~~~~~ 87 (115)
T 3lqv_A 78 VVLYYNANRA 87 (115)
T ss_dssp EEEECCHHHH
T ss_pred EEEEecCChh
Confidence 9998765443
No 303
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=6.8e-15 Score=114.53 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=67.9
Q ss_pred ccceeecccccccchHHHHHHhccCCCee--EEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIE--SVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~--~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
...+||+|||+.+++++|+++|++| .|. +|+|++|+. |+++|||||+|+++++|++||. .++..+.|+.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-------~~~~~l~gR~ 112 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-------KHKERIGHRY 112 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-------TTTCCBTTBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-------HCCCEECCEE
Confidence 4679999999999999999999999 677 999999987 9999999999999999999995 4567888999
Q ss_pred cccccCc
Q psy14686 199 HRTHGTH 205 (306)
Q Consensus 199 i~v~~~~ 205 (306)
+.|..+.
T Consensus 113 I~V~~a~ 119 (126)
T 2hgm_A 113 IEVFKSS 119 (126)
T ss_dssp CCCEEEC
T ss_pred EEEEECC
Confidence 8887553
No 304
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=3e-15 Score=113.42 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=71.5
Q ss_pred cccceeecccccccchHHHHHHhccCCC---eeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGT---IESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~---I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
...+++|+|||+.+++++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++|| .+++..+.|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al-------~~~~~~~~g 81 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKAL-------EKHRMYMGQ 81 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHH-------TTTTCCSSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHH-------HhCcceeCC
Confidence 4567999999999999999999999988 89999999987 999999999999999999999 468888899
Q ss_pred cccccccCcc
Q psy14686 197 EDHRTHGTHQ 206 (306)
Q Consensus 197 ~~i~v~~~~~ 206 (306)
+.+++..+..
T Consensus 82 r~i~V~~a~~ 91 (107)
T 2lmi_A 82 RYVEVYEINN 91 (107)
T ss_dssp SCCCCEECCH
T ss_pred eEEEEEECCH
Confidence 9999886654
No 305
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=108.14 Aligned_cols=80 Identities=16% Similarity=0.300 Sum_probs=70.9
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 83 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALN------SCNKREIEGRAI 83 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHH------HTSSEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHH------HhCCCEeCCeEE
Confidence 35689999999999999999999999977 56666 679999999999999999999997 789999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9998766543
No 306
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=111.61 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=67.2
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccC--ceEecCcc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVD--QEVINGED 198 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~--~~~i~g~~ 198 (306)
.+.+||+|||+.+++++|+++|++||.|.+++|+++ ||||||+|++.++|++|+. .++ +..+.|+.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~------~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVN------YYTSVTPVLRGQP 98 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHH------HHHHHCCCBTTBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHH------HhccCCceECCeE
Confidence 467999999999999999999999999999999865 6899999999999999997 444 46789999
Q ss_pred cccccCccccc
Q psy14686 199 HRTHGTHQEAK 209 (306)
Q Consensus 199 i~v~~~~~~~~ 209 (306)
++|.++..+..
T Consensus 99 l~V~~a~~k~~ 109 (119)
T 2ad9_A 99 IYIQFSNHKEL 109 (119)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCCCC
Confidence 99998765443
No 307
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.2e-14 Score=123.43 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCC---------CHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCc
Q psy14686 39 EPESLRKLFIGGLDYRT---------NDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHE 108 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~ 108 (306)
.....++|||+|||.++ ||++|+++|++||+|.+|+++. +||||||+|.+.++|+.|++. ++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35578999999999998 7999999999999999999985 478999999999999999988 8988
Q ss_pred c------------CCcEEEEeecccc
Q psy14686 109 I------------DGRVVETKRAVPR 122 (306)
Q Consensus 109 ~------------~g~~i~v~~~~~~ 122 (306)
+ .|+.|.|.++...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 8 8999999998754
No 308
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.51 E-value=1.2e-14 Score=110.65 Aligned_cols=77 Identities=8% Similarity=0.052 Sum_probs=69.0
Q ss_pred ccceeecccccccchHHHHHHhccCC-CeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYG-TIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G-~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++|+|||+.+++++|+++|++|| .|..+++.. +.++|||||+|++.++|++|+. .+|+..+.|+.+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~------~lng~~l~Gr~i 97 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALE------RLNNIEFRGSVI 97 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHH------HTTTEEETTEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHH------HcCCCEECCeEE
Confidence 45799999999999999999999999 899999853 3589999999999999999997 789999999999
Q ss_pred ccccCccc
Q psy14686 200 RTHGTHQE 207 (306)
Q Consensus 200 ~v~~~~~~ 207 (306)
++..+...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99876543
No 309
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-15 Score=117.53 Aligned_cols=84 Identities=24% Similarity=0.311 Sum_probs=76.7
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeE--------EEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIES--------VNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQ 191 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~--------v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~ 191 (306)
..+++||+|||..+++++|+++|++||.|.. +++++++.+++++|||||+|.+.++|++|+. .+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~------~l~g 79 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID------WFDG 79 (116)
Confidence 3567999999999999999999999999999 9999998899999999999999999999996 7899
Q ss_pred eEecCcccccccCccccc
Q psy14686 192 EVINGEDHRTHGTHQEAK 209 (306)
Q Consensus 192 ~~i~g~~i~v~~~~~~~~ 209 (306)
..+.|+.+++.++.....
T Consensus 80 ~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 80 KEFSGNPIKVSFATRRAD 97 (116)
Confidence 999999999998765443
No 310
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.9e-14 Score=106.82 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=68.7
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC----
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING---- 196 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g---- 196 (306)
..++||+|||..+++++|+++|++||.|..++|+.+ |||||+|.+.++|++||. .+|+..+.|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~------~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVR------KLDNTKFRSHEGE 81 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHH------HSSSEEEECTTSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHH------HHCcCCccCCcCc
Confidence 467999999999999999999999999999999875 799999999999999997 789999999
Q ss_pred -cccccccCccccc
Q psy14686 197 -EDHRTHGTHQEAK 209 (306)
Q Consensus 197 -~~i~v~~~~~~~~ 209 (306)
+.++|..+.....
T Consensus 82 ~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEEESSCCSC
T ss_pred ceEEEEEeCCCCCC
Confidence 8899987765443
No 311
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-15 Score=113.80 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=72.2
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..++||+|||..+++++|+++|++||.|.. .++.+..+|+++|||||+|.+.++|++|+ .+++..+.|+.++
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~-------~l~g~~~~g~~l~ 88 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-------ELTGLKVFGNEIK 88 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-------HGGGCCBTTBCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHH-------hcCCcEECCcEEE
Confidence 467999999999999999999999999988 77777788999999999999999999999 4788888999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 89 V~~a~~~~~ 97 (101)
T 1fj7_A 89 LEKPKGRDG 97 (101)
T ss_dssp EECCSCCCC
T ss_pred EEEcCCCCC
Confidence 997765443
No 312
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=103.56 Aligned_cols=76 Identities=12% Similarity=0.326 Sum_probs=68.6
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|.+++++ +|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 72 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIR------NLHHYKLHGVNI 72 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHH------HHTTCBCSSCBC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHH------HhcCCccCCcEE
Confidence 35689999999999999999999999999999997 5799999999999999997 788889999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 73 ~v~~a~~~~~ 82 (90)
T 2dnq_A 73 NVEASKNKSK 82 (90)
T ss_dssp EEECSSCCCC
T ss_pred EEEECCCCCC
Confidence 9998766544
No 313
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9e-14 Score=106.13 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=71.0
Q ss_pred CCCCCCCCeEEEcCCCCCC-----------CHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-
Q psy14686 37 CSEPESLRKLFIGGLDYRT-----------NDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN- 104 (306)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~-----------te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~- 104 (306)
...+...++|+|+||.... ++++|+++|++||+|.+|.| .++ .++|||||+|.++++|.+|++.
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 3456778999999994433 26899999999999999966 444 3799999999999999999987
Q ss_pred CCCccCCcEEEEeeccccce
Q psy14686 105 RPHEIDGRVVETKRAVPREV 124 (306)
Q Consensus 105 ~~~~~~g~~i~v~~~~~~~~ 124 (306)
++..+.|+.|.|.++.++..
T Consensus 85 ng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TTCEETTEECEEEECCSCCC
T ss_pred CCCEECCcEEEEEEeCCCCC
Confidence 99999999999999877543
No 314
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=107.18 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=64.4
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCce--EecCcc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQE--VINGED 198 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~--~i~g~~ 198 (306)
.+.++|+|||..+++++|+++|++||.|.++++++ +||||||+|++.++|.+|+. .+++. .+.|+.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~------~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVN------YAADNQIYIAGHP 88 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHH------HHHHSCEEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHH------HhcCCCceeCCcE
Confidence 45799999999999999999999999999999974 46899999999999999997 55544 478999
Q ss_pred cccccCcc
Q psy14686 199 HRTHGTHQ 206 (306)
Q Consensus 199 i~v~~~~~ 206 (306)
+++.++..
T Consensus 89 i~V~~S~~ 96 (100)
T 3r27_A 89 AFVNYSTS 96 (100)
T ss_dssp EEEEECSC
T ss_pred EEEEeccc
Confidence 99987654
No 315
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.3e-14 Score=107.20 Aligned_cols=76 Identities=28% Similarity=0.350 Sum_probs=69.3
Q ss_pred ceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccc
Q psy14686 123 EVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTH 202 (306)
Q Consensus 123 ~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~ 202 (306)
+++|+|||..+++++|+++|++||.|.+++++++ ++|||||+|.+.++|++|+. .+++..+.|+.+++.
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVR------GLDGKVICGSRVRVE 70 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHH------HHHHSCSSSCCCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHH------HHCCCeECCcEEEEE
Confidence 5899999999999999999999999999999876 78999999999999999997 678888999999999
Q ss_pred cCccccc
Q psy14686 203 GTHQEAK 209 (306)
Q Consensus 203 ~~~~~~~ 209 (306)
++.....
T Consensus 71 ~a~~~~~ 77 (101)
T 2hvz_A 71 LSTGMPR 77 (101)
T ss_dssp ESSSCCC
T ss_pred EccCCCC
Confidence 8766553
No 316
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.8e-14 Score=105.14 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=72.1
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|+.|+ .++++.++.++.++|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l 84 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE------AMEDGEIDGNKV 84 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHH------HHTTCEETTEEC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHH------HhCCCeECCeEE
Confidence 346799999999999999999999874 78888898899999999999999999999997 789999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9998765443
No 317
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=107.45 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=66.2
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+.+||+|||..+++++|+++|++||.|.++.++++ ||||||+|++.++|++|+... ..+...+.|+.++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l----~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFA----ADVPVYIAGQQAF 84 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH----HHSCCBSSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHh----ccCCceECCEEEE
Confidence 367999999999999999999999999999998753 689999999999999999722 2234568899999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 998765443
No 318
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=112.21 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=70.1
Q ss_pred ccceeecccccccchHHHH----HHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC
Q psy14686 121 PREVKVRRVTKVQIALEQM----DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~----~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
.+++||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|++|+. .+|+..+.|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~------~lng~~l~g 99 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVE------AFQGYPFQG 99 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHH------HSTTCCCTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHH------HHCCCEeCC
Confidence 3579999999999998876 6999999999998753 58899999999999999999998 889999999
Q ss_pred cccccccCcccc
Q psy14686 197 EDHRTHGTHQEA 208 (306)
Q Consensus 197 ~~i~v~~~~~~~ 208 (306)
+.++|.++....
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999876543
No 319
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.4e-14 Score=107.86 Aligned_cols=78 Identities=13% Similarity=0.267 Sum_probs=70.8
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|.+++++++ +|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIV------SVNGTTIEGHVVK 92 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHH------HHTTCEETTEECE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHH------HcCCCEECCcEEE
Confidence 467999999999999999999999999999999865 6899999999999999997 7899999999999
Q ss_pred cccCcccccc
Q psy14686 201 THGTHQEAKV 210 (306)
Q Consensus 201 v~~~~~~~~~ 210 (306)
+.++......
T Consensus 93 v~~a~~~~~~ 102 (109)
T 1x4g_A 93 CYWGKESPDM 102 (109)
T ss_dssp EECCCCCCSS
T ss_pred EEecCCCCCC
Confidence 9987765543
No 320
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.5e-14 Score=108.45 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=66.1
Q ss_pred ccceeeccccc-ccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccC--ceEecCc
Q psy14686 121 PREVKVRRVTK-VQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVD--QEVINGE 197 (306)
Q Consensus 121 ~~~~~v~nl~~-~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~--~~~i~g~ 197 (306)
.+++||+|||+ .+++++|+++|++||.|.+++|+++ +|||||+|++.++|++|+. .++ ...+.|+
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~------~l~~~~~~~~Gr 82 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVD------YYTTTPALVFGK 82 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHH------HHHHSCCEETTE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHH------HHcCCCceECCc
Confidence 46799999999 9999999999999999999999865 4799999999999999997 444 4568999
Q ss_pred ccccccCcccc
Q psy14686 198 DHRTHGTHQEA 208 (306)
Q Consensus 198 ~i~v~~~~~~~ 208 (306)
.++|.++....
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 1x4d_A 83 PVRVHLSQKYK 93 (102)
T ss_dssp ECEEEEECCCT
T ss_pred EEEEEECCCCC
Confidence 99998776543
No 321
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=2.1e-14 Score=106.33 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=69.1
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE------EKQGAEIDGRSVS 84 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHH------HTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHH------HhCCCEECCeEEE
Confidence 4679999999999999999999999988766 2468999999999999999999997 7899999999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 85 v~~a~~~~~ 93 (96)
T 1fjc_A 85 LYYTGEKGG 93 (96)
T ss_dssp EEECSSSCC
T ss_pred EEEcCCCCC
Confidence 987765443
No 322
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5e-14 Score=104.57 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=68.0
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEec--Ccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN--GED 198 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~--g~~ 198 (306)
.++++|+|||..+++++|+++|++||.|.+++++++ +|||||+|.+.++|++|+. .+++..+. |+.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~------~l~g~~~~~~g~~ 84 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACA------KMRGFPLGGPDRR 84 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHH------HHTTCBCSSSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHH------HHCCCEeCCCCcE
Confidence 468999999999999999999999999999998753 6899999999999999997 78888898 899
Q ss_pred cccccCcccc
Q psy14686 199 HRTHGTHQEA 208 (306)
Q Consensus 199 i~v~~~~~~~ 208 (306)
+++.++..++
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9998776543
No 323
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.8e-14 Score=104.98 Aligned_cols=74 Identities=14% Similarity=0.278 Sum_probs=67.4
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|.++++. +++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l~ 94 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIV------ALANFPFQGRNLR 94 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHH------HHTTCEETTEECC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHH------HhCCCeECCeEEE
Confidence 4679999999999999999999999999999997 457899999999999999997 7889999999999
Q ss_pred cccCcc
Q psy14686 201 THGTHQ 206 (306)
Q Consensus 201 v~~~~~ 206 (306)
+.++..
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 987653
No 324
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.5e-14 Score=100.58 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=65.8
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceecc-CceEecCcc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEV-DQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~-~~~~i~g~~ 198 (306)
..++++|+|||..+++++|+++|++||.|.++++++ ++|||||+|.+.++|++|+. .+ ++..+.|+.
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~------~l~~~~~~~g~~ 78 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAE------KSFNKLIVNGRR 78 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHH------TTTTTCEETTEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHH------HhcCCeeECCCE
Confidence 346799999999999999999999999999999986 36899999999999999997 56 888999999
Q ss_pred cccccC
Q psy14686 199 HRTHGT 204 (306)
Q Consensus 199 i~v~~~ 204 (306)
+++.++
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 988765
No 325
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=7.4e-14 Score=104.84 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=69.1
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|..++++ +|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 75 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAME------EMNGKDLEGENI 75 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHH------HHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHH------HHCCCccCCCEE
Confidence 34689999999999999999999999999999986 3499999999999999997 789999999999
Q ss_pred ccccCccccccC
Q psy14686 200 RTHGTHQEAKVD 211 (306)
Q Consensus 200 ~v~~~~~~~~~~ 211 (306)
++.++.......
T Consensus 76 ~v~~a~~~~~~~ 87 (103)
T 2dgu_A 76 EIVFAKPPDQKR 87 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEcCCCcccc
Confidence 999876654443
No 326
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-15 Score=112.49 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=70.7
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~------~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH------LVNGYKLYGKILV 98 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHH------HSTTCBCSSCBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHH------HhCCCEeCCcEEE
Confidence 3679999999999999999999999999543333333378999999999999999999997 7888999999999
Q ss_pred cccCcccccc
Q psy14686 201 THGTHQEAKV 210 (306)
Q Consensus 201 v~~~~~~~~~ 210 (306)
+.++......
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9987665443
No 327
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=5e-14 Score=104.97 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=69.6
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..++++|+|||..+++++|+++|++||.|..++++++ +|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~------~l~g~~~~g~~l 81 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKV------ELDNMPLRGKQL 81 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHH------HHTTCCBTTBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHH------HhCCCEeCCceE
Confidence 3468999999999999999999999999999999753 6899999999999999997 788999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpj_A 82 RVRFACHSAS 91 (99)
T ss_dssp EEEESSCCSC
T ss_pred EEEEcCCCCC
Confidence 9998765443
No 328
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=2.4e-13 Score=113.83 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=82.0
Q ss_pred ChHHHHHHHHcC---CCccCCcEEEEeec----------------cccceeecccccccchHHHHHHhccCCCeeEEEEE
Q psy14686 94 ESKMVDEAMSNR---PHEIDGRVVETKRA----------------VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMV 154 (306)
Q Consensus 94 ~~~~a~~Al~~~---~~~~~g~~i~v~~~----------------~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~ 154 (306)
+.+.+..|++.. ...+.+....+... ..+++||+|||..+++++|+++|++||.|.+|+++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567788888774 22334433333332 12569999999999999999999999999999999
Q ss_pred ecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCcc
Q psy14686 155 TNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQ 206 (306)
Q Consensus 155 ~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~ 206 (306)
++. +|.++|||||+|++.++|++|+. .++ ..+.|+.+.+.++..
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~------~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVE------TPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHH------CTT-CEETTEECEEEETTT
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHH------hCC-CeECCEEEEEEEhHH
Confidence 986 49999999999999999999996 333 478899998876543
No 329
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.46 E-value=8.3e-14 Score=105.63 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=68.5
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.+++++ +|||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l 95 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIE------EVHGKSFANQPL 95 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHH------HHTTCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHH------HcCCCEECCeEE
Confidence 34679999999999999999999999999999997 6899999999999999997 789999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++....+
T Consensus 96 ~V~~a~~~~~ 105 (108)
T 2jvo_A 96 EVVYSKLPAK 105 (108)
T ss_dssp EEESCSCCC-
T ss_pred EEEEecCCCC
Confidence 9998766543
No 330
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-14 Score=107.99 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=66.0
Q ss_pred cccceeecccccc-cchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VPREVKVRRVTKV-QIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~~-~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
..+.+||+|||+. +++++|+++|++||.|.+++|++ +||||||+|++.++|++|+... .+++..+.|+.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l----~~~~~~l~Gr~ 93 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHC----LKKALWFQGRC 93 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHH----HHSCCCSSSSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHh----ccCCceECCEE
Confidence 3467999999998 99999999999999999999973 4789999999999999999722 23456688999
Q ss_pred cccccCccc
Q psy14686 199 HRTHGTHQE 207 (306)
Q Consensus 199 i~v~~~~~~ 207 (306)
++|.++...
T Consensus 94 l~V~~a~~~ 102 (112)
T 1x4f_A 94 VKVDLSEKY 102 (112)
T ss_dssp CEEEEECSC
T ss_pred EEEEECccc
Confidence 999876543
No 331
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.4e-14 Score=107.84 Aligned_cols=71 Identities=14% Similarity=0.334 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEE
Q psy14686 48 IGGLDYRTNDDSLKAFF------------EQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114 (306)
Q Consensus 48 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i 114 (306)
+.|||+.+|+++|++.| ++||+|.+|+++++. +++++|||||+|.++++|.+|++. +|..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888887777 999999999999987 589999999999999999999997 9999999999
Q ss_pred EEeec
Q psy14686 115 ETKRA 119 (306)
Q Consensus 115 ~v~~~ 119 (306)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 332
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=6.7e-14 Score=115.65 Aligned_cols=80 Identities=13% Similarity=0.173 Sum_probs=74.2
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..+++|+|||..+++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~------~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMK------QYKGVPLDGRPMD 160 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHH------HSTTCBCSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHH------HhCCCEECCEEEE
Confidence 4679999999999999999999999999999999998 89999999999999999999997 7899999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
|.++...
T Consensus 161 V~~a~~~ 167 (177)
T 2f3j_A 161 IQLVASQ 167 (177)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9876544
No 333
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.5e-14 Score=104.39 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=68.4
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|. ++++. +.++|||||+|.+.++|++|+. .+|+..+.|+.+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 86 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVS------CLQGLRLGTDTL 86 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHH------HHTTCCSSSSCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHH------HhCCCEECCcEE
Confidence 356899999999999999999999999997 67765 4678999999999999999997 789999999999
Q ss_pred ccccCccc
Q psy14686 200 RTHGTHQE 207 (306)
Q Consensus 200 ~v~~~~~~ 207 (306)
++.++...
T Consensus 87 ~V~~a~~~ 94 (97)
T 2e5j_A 87 RVALARQQ 94 (97)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99877554
No 334
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=1.2e-13 Score=101.01 Aligned_cols=75 Identities=27% Similarity=0.357 Sum_probs=60.7
Q ss_pred ccccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 119 AVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
..+.++||+|||+.+++++|+++|++||.|.+++|+++ +||||||+|++.++|+++. .....+.|+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~--------~~~~~~~g~~ 75 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC--------GEDLIIKGIS 75 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT--------TCEEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc--------CCCcccCCEE
Confidence 44578999999999999999999999999999999864 7899999999999998543 2244456777
Q ss_pred cccccCcc
Q psy14686 199 HRTHGTHQ 206 (306)
Q Consensus 199 i~v~~~~~ 206 (306)
+.+..+..
T Consensus 76 v~v~~a~~ 83 (89)
T 3d2w_A 76 VHISNAEP 83 (89)
T ss_dssp EEEEECC-
T ss_pred EEEEEcCC
Confidence 77776543
No 335
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.45 E-value=1.4e-13 Score=102.27 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=66.8
Q ss_pred cccceeeccccc-ccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VPREVKVRRVTK-VQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~-~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
..+++||+|||. .+++++|+++|++||.|.++++. +|||||+|.+.++|++|+. .+++..+.|+.
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~------~l~g~~~~g~~ 86 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIE------XESQEMNFGKK 86 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHH------HHTTSEETTEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHH------HcCCCEECCEE
Confidence 456899999998 99999999999999999999983 6899999999999999997 78999999999
Q ss_pred cccccCccc
Q psy14686 199 HRTHGTHQE 207 (306)
Q Consensus 199 i~v~~~~~~ 207 (306)
+++.++...
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999876543
No 336
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=1.3e-13 Score=103.99 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=70.0
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHhhccCCEEEEEEeeCCCC--CCcceEEEEEecChHHHHHHHHc-CCCc
Q psy14686 42 SLRKLFIGGL--DYRTN--------DDSLKAFFEQWGEIVDVVVMKDPVT--KRSRGFGFITYSESKMVDEAMSN-RPHE 108 (306)
Q Consensus 42 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~~--g~~kg~afV~f~~~~~a~~Al~~-~~~~ 108 (306)
+++.|.+.|+ |.+.. ++||++.|++||+|.+|+|++++.+ ++++|||||+|.++++|.+|++. ||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 44443 3699999999999999999988754 46899999999999999999988 9999
Q ss_pred cCCcEEEEeecccc
Q psy14686 109 IDGRVVETKRAVPR 122 (306)
Q Consensus 109 ~~g~~i~v~~~~~~ 122 (306)
+.||.|.|.+..+.
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999987553
No 337
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=3e-14 Score=105.66 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=71.1
Q ss_pred ccceeecccccccchHHHH----HHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC
Q psy14686 121 PREVKVRRVTKVQIALEQM----DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~----~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
.++++|+|||..+++++|+ ++|++||.|.++++++ +|.++|||||+|.+.++|++|+. .+++..+.|
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~------~l~g~~~~g 78 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALR------SMQGFPFYD 78 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHH------HHTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHH------HhCCCEECC
Confidence 4679999999999999999 9999999999999873 47889999999999999999997 789999999
Q ss_pred cccccccCcccc
Q psy14686 197 EDHRTHGTHQEA 208 (306)
Q Consensus 197 ~~i~v~~~~~~~ 208 (306)
+.+++.++....
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999998776543
No 338
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.7e-13 Score=98.67 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=66.0
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|||..+++++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|++|+ .+++..+.|+.++
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai-------~l~g~~~~g~~l~ 75 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVL-------SQSQHSLGGHRLR 75 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHH-------TCSCCEETTEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHH-------hcCCeEECCEEEE
Confidence 4579999999999999999999999999987 56666665 9999999999999998 5788999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
+..+...
T Consensus 76 V~~a~~~ 82 (94)
T 2e5g_A 76 VRPREQK 82 (94)
T ss_dssp CBCSCCS
T ss_pred EEECCcC
Confidence 9866443
No 339
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=100.64 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=68.2
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.++++++ |||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 73 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIA------QLNGKEVKGKRI 73 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHH------HHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHH------HhCCCEECCcEE
Confidence 356799999999999999999999999999999974 399999999999999997 789999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 74 ~v~~a~~~~~ 83 (90)
T 2dnp_A 74 NVELSTKGQK 83 (90)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9998766543
No 340
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=99.85 Aligned_cols=76 Identities=13% Similarity=0.291 Sum_probs=68.2
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.++++++ +||||+|.+.++|++|+. .+++..+.|+.+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~------~l~g~~~~g~~l 74 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIR------GLDNTEFQGKRM 74 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHH------HHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHH------HhCCCeeCCcEE
Confidence 346799999999999999999999999999999974 399999999999999997 789999999999
Q ss_pred ccccCccccc
Q psy14686 200 RTHGTHQEAK 209 (306)
Q Consensus 200 ~v~~~~~~~~ 209 (306)
++.++.....
T Consensus 75 ~V~~a~~~~~ 84 (92)
T 2dgt_A 75 HVQLSTSRLR 84 (92)
T ss_dssp EEEESSCCCS
T ss_pred EEEEccCCCC
Confidence 9998765544
No 341
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=7.2e-14 Score=106.99 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=57.7
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCC---CCceEEEEEEeCCHHHHHHHHhcC
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKET---GAKRGFAFIEFDDYDVVDKIVLDK 183 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~---g~~kG~aFV~F~~~e~A~~Al~~~ 183 (306)
..+++||+|||+.+++++|+++|++||.|. +.++.++.+ |+++|||||+|++.++|++|+...
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 357899999999999999999999999999 888888777 799999999999999999999743
No 342
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=8.9e-14 Score=106.00 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=67.5
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++||.|..+++++ ++|||||+|.+.++|++|+. .+|+..+.|+.++
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~------~l~g~~~~g~~l~ 77 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFR------HLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHH------HHTTCBSSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHH------HhCCCEECCeEEE
Confidence 35799999999999999999999999999999863 56899999999999999997 7899999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
+.++...
T Consensus 78 V~~a~~~ 84 (111)
T 1whx_A 78 LEWAPIG 84 (111)
T ss_dssp EEEEETT
T ss_pred EEECCCC
Confidence 9876543
No 343
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.2e-13 Score=102.28 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=67.7
Q ss_pred cccceeeccccc-ccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 120 VPREVKVRRVTK-VQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 120 ~~~~~~v~nl~~-~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
..+++||+|||. .+++++|+++|++||.|.++++. +|||||+|.+.++|++|+. .+++..+.|+.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~ 74 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIE------CESQEMNFGKK 74 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHH------HHTCSSCBTTT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHH------HcCCCeeCCcE
Confidence 356799999998 99999999999999999999984 6799999999999999997 78999999999
Q ss_pred cccccCccccc
Q psy14686 199 HRTHGTHQEAK 209 (306)
Q Consensus 199 i~v~~~~~~~~ 209 (306)
+++.++.....
T Consensus 75 l~V~~a~~~~~ 85 (96)
T 2kvi_A 75 LILEVSSSNAR 85 (96)
T ss_dssp BCEEEEECCCC
T ss_pred EEEEEcCcCCC
Confidence 99998755433
No 344
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=97.91 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=62.2
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEEE
Q psy14686 43 LRKLFIGGLD-------YRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVE 115 (306)
Q Consensus 43 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i~ 115 (306)
..+|-|.-.+ .++|+++|+++|++||+|.+|+|+ ++++|||||+|.++++|++|++. ...+.|++|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEE
Confidence 4566665433 468999999999999999999998 36889999999999999999998 4447899999
Q ss_pred Eeecccc
Q psy14686 116 TKRAVPR 122 (306)
Q Consensus 116 v~~~~~~ 122 (306)
|.++.++
T Consensus 84 V~~a~~~ 90 (100)
T 2d9o_A 84 ISWLEGQ 90 (100)
T ss_dssp EECSSCC
T ss_pred EEEccCC
Confidence 9998764
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=2.6e-13 Score=102.29 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=67.2
Q ss_pred cceeeccccc-----ccchHHHHHHhccCCCeeEEEEEecCCC-CCceEEEEEEeCCHHHHHHHHhcCcceeccCceEec
Q psy14686 122 REVKVRRVTK-----VQIALEQMDYFGQYGTIESVNMVTNKET-GAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN 195 (306)
Q Consensus 122 ~~~~v~nl~~-----~~~e~~l~~~F~~~G~I~~v~v~~d~~~-g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~ 195 (306)
+.+++.|+.. .-++++|+++|++||.|.++.|++++.+ ++++|||||+|.++++|++|+. .+|++.+.
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~------~lnG~~~~ 82 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVV------DLNGRYFG 82 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHH------HHTTCEET
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHH------HHCCCEEC
Confidence 4566666642 2368999999999999999999998754 6899999999999999999998 89999999
Q ss_pred CcccccccCcc
Q psy14686 196 GEDHRTHGTHQ 206 (306)
Q Consensus 196 g~~i~v~~~~~ 206 (306)
||.+.+..+..
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 99999987654
No 346
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=1.8e-13 Score=103.92 Aligned_cols=72 Identities=15% Similarity=0.340 Sum_probs=66.4
Q ss_pred cceeecccccc-cchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 122 REVKVRRVTKV-QIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 122 ~~~~v~nl~~~-~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
+++||+|||.. +++++|+++|++||.|.++++ ++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVL------GENGRVLAGQTLD 93 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHH------HHTTCEETTEECC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHH------HcCCCEECCeEEE
Confidence 57999999999 999999999999999999998 47899999999999999997 7899999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
+.++...
T Consensus 94 V~~a~~~ 100 (110)
T 1wf1_A 94 INMAGEP 100 (110)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9987543
No 347
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=1.5e-13 Score=100.07 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=67.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.++++|+|||..+++++|+++|++| .|.++++. +++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~------~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQ------MFHQYSFRGKDLI 71 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHH------HHTTEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHH------HhCCCeECCcEEE
Confidence 4679999999999999999999999 99999984 678999999999999999997 7899999999999
Q ss_pred cccCccc
Q psy14686 201 THGTHQE 207 (306)
Q Consensus 201 v~~~~~~ 207 (306)
+.++...
T Consensus 72 V~~a~~~ 78 (88)
T 1wg1_A 72 VQLQPTD 78 (88)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9876554
No 348
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.6e-13 Score=99.66 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=67.1
Q ss_pred ccceeecccccccchHHHHHHhccC--CCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQY--GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~--G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
.+++||+|||..+++++|+++|++| |.|..++++ +|||||+|.+.++|++|+. .+++..+.|+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~------~l~g~~~~g~~ 80 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMK------ALNGKVLDGSP 80 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHH------HHSSEEETTEE
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHH------HhCCCEeCCcE
Confidence 4679999999999999999999999 999999874 5699999999999999997 78999999999
Q ss_pred cccccCccccc
Q psy14686 199 HRTHGTHQEAK 209 (306)
Q Consensus 199 i~v~~~~~~~~ 209 (306)
+++.++....+
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99998765443
No 349
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=3.6e-13 Score=103.57 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=70.1
Q ss_pred CCCeEEEcCCC--CCC---CHHHHHHHhhccCCEEEEEEeeCCC----CCCcceEEEEEecChHHHHHHHHc-CCCccCC
Q psy14686 42 SLRKLFIGGLD--YRT---NDDSLKAFFEQWGEIVDVVVMKDPV----TKRSRGFGFITYSESKMVDEAMSN-RPHEIDG 111 (306)
Q Consensus 42 ~~~~l~V~nLp--~~~---te~~L~~~F~~~G~i~~v~i~~~~~----~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g 111 (306)
+++.|+++|+- .++ .++||++.|++||+|.+|+|++++. +++++|++||+|.++++|.+|++. ||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 36799999983 222 4689999999999999999999864 467889999999999999999998 9999999
Q ss_pred cEEEEeecccc
Q psy14686 112 RVVETKRAVPR 122 (306)
Q Consensus 112 ~~i~v~~~~~~ 122 (306)
|.|.|.+....
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999987653
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=4.6e-14 Score=112.44 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=69.4
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEE--------EEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCce
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESV--------NMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQE 192 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v--------~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~ 192 (306)
..++||+|||+.+++++|+++|++||.|..+ ++. .+|+++|||||+|.+.++|.+|+. .+|+.
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~------~lng~ 115 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALK------EANGY 115 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHH------HHTTB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHH------HhCCC
Confidence 3579999999999999999999999998874 332 468999999999999999999997 78999
Q ss_pred EecCcccccccCcccc
Q psy14686 193 VINGEDHRTHGTHQEA 208 (306)
Q Consensus 193 ~i~g~~i~v~~~~~~~ 208 (306)
.+.|+.++|.++....
T Consensus 116 ~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 116 VLFGKPMVVQFARSAR 131 (143)
T ss_dssp EETTEECEEEECCCSC
T ss_pred EeCCcEEEEEECCCCC
Confidence 9999999999876543
No 351
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-13 Score=105.04 Aligned_cols=73 Identities=5% Similarity=0.119 Sum_probs=62.8
Q ss_pred ccceee--cccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe----
Q psy14686 121 PREVKV--RRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI---- 194 (306)
Q Consensus 121 ~~~~~v--~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i---- 194 (306)
.+++|| +||+..+++++|+++|++||.|.++.+++ .||||||+|++.++|++|+. .+|+..+
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~------~lnG~~~~~~l 92 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYV------TLNGKEVVDDL 92 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHH------HTTTCEEECTT
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHH------HhCCCEEcccc
Confidence 457999 77999999999999999999999998863 37899999999999999998 7888877
Q ss_pred -cCcccccccCc
Q psy14686 195 -NGEDHRTHGTH 205 (306)
Q Consensus 195 -~g~~i~v~~~~ 205 (306)
.++.+.+.++.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 56777776654
No 352
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.4e-13 Score=101.28 Aligned_cols=77 Identities=12% Similarity=0.203 Sum_probs=66.7
Q ss_pred cccceeecccccccchHHHHHHhccCCC-eeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCc-eEecCc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGT-IESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQ-EVINGE 197 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~-I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~-~~i~g~ 197 (306)
..+++||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|++|+. .+++ ..+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~------~l~g~~~~~g~ 73 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIE------TLSGKVELHGK 73 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHH------HHTTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHH------HccCCeeECCE
Confidence 3468999999999999999999999999 6666663 47899999999999999997 7888 899999
Q ss_pred ccccccCccccc
Q psy14686 198 DHRTHGTHQEAK 209 (306)
Q Consensus 198 ~i~v~~~~~~~~ 209 (306)
.+++.++.....
T Consensus 74 ~l~v~~a~~~~~ 85 (93)
T 2cqh_A 74 IMEVDYSVSKKL 85 (93)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEccCccc
Confidence 999998765433
No 353
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=3.5e-13 Score=108.94 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=67.2
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC--ccc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING--EDH 199 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g--~~i 199 (306)
..++|+||++.+++++|+++|++||.|.+|++..+ .++|||||+|++.++|++|+. .+|+..|.| +.+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~------~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKL------SLDGQNIYNACCTL 116 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHH------HSTTBCSSSSCSCE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHH------HhCCCEecCCCcEE
Confidence 45789999999999999999999999999999753 368999999999999999998 889999965 888
Q ss_pred ccccCccc
Q psy14686 200 RTHGTHQE 207 (306)
Q Consensus 200 ~v~~~~~~ 207 (306)
+|.++...
T Consensus 117 ~V~~Ak~~ 124 (164)
T 1sjr_A 117 RIDFSKLT 124 (164)
T ss_dssp EEEECSSS
T ss_pred EEEEecCC
Confidence 88877644
No 354
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.5e-13 Score=97.60 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=66.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|+ .+++++|+++|++||.|.++++. .++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~------~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVA------ELNGTQVESVQLK 80 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHH------HTTTEEETTEEEE
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHH------HhCCCeECCeEEE
Confidence 457999995 89999999999999999999984 567899999999999999997 7899999999999
Q ss_pred cccCccccc
Q psy14686 201 THGTHQEAK 209 (306)
Q Consensus 201 v~~~~~~~~ 209 (306)
+.++.....
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 998766544
No 355
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.40 E-value=2.7e-13 Score=103.97 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=61.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
..++||+|||+.+++++|+++|++||.|.++.|+.+ |||||+|++.++|++||. .+|+..+.|+.++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~------~l~g~~~~gr~~~ 82 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVR------KLDNTKFRSHEGE 82 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHH------HHTTCBCCCTTSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHH------HhCCCEECCcEee
Confidence 467999999999999999999999999999999765 899999999999999997 7899999998844
Q ss_pred c
Q psy14686 201 T 201 (306)
Q Consensus 201 v 201 (306)
+
T Consensus 83 ~ 83 (115)
T 3beg_B 83 T 83 (115)
T ss_dssp C
T ss_pred e
Confidence 3
No 356
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=6.3e-13 Score=103.50 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEE-EEEEeCCHHHHHHHHhcCcceeccCceEecC--cc
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGF-AFIEFDDYDVVDKIVLDKVVVLEVDQEVING--ED 198 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~-aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g--~~ 198 (306)
-.++|+||++.+++++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|++|+. .+|+..+.| +.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~------~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKL------SLDGQNIYNACCT 97 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHH------HHTTCEEETTEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHH------HcCCCeecCCCcE
Confidence 35789999999999999999999999999998764 3577 9999999999999998 899999988 78
Q ss_pred cccccCccc
Q psy14686 199 HRTHGTHQE 207 (306)
Q Consensus 199 i~v~~~~~~ 207 (306)
+++.+++..
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 888876543
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.6e-13 Score=98.03 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=62.7
Q ss_pred cccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
..+++||+|||..+++++|+++|++||.|.+++++++ ++|||||+|++.++|++|+. ....+.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--------~~~~~~g~~l 70 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--------EDLIIKGISV 70 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--------CEEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--------CCceeCCEEE
Confidence 3578999999999999999999999999999999754 78999999999999987642 2455677788
Q ss_pred ccccCccc
Q psy14686 200 RTHGTHQE 207 (306)
Q Consensus 200 ~v~~~~~~ 207 (306)
++..+..+
T Consensus 71 ~v~~a~~~ 78 (88)
T 1wf0_A 71 HISNAEPK 78 (88)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 88766543
No 358
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.3e-13 Score=99.77 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=68.0
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEE-EEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVN-MVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDH 199 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~-v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i 199 (306)
.+++||+|||..+++++|+++|++||.|.+++ ++.++.++ .|||+|.+.++|++|+. .+++..+.|+.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~------~l~g~~~~g~~l 84 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALD------KLNGFQLENFTL 84 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHH------HHTTCBCSSCBC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHH------HhCCCEECCcEE
Confidence 46799999999999999999999999999995 88776543 39999999999999997 789999999999
Q ss_pred ccccCccc
Q psy14686 200 RTHGTHQE 207 (306)
Q Consensus 200 ~v~~~~~~ 207 (306)
++.++..+
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99876544
No 359
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=4.1e-13 Score=101.08 Aligned_cols=72 Identities=17% Similarity=0.339 Sum_probs=61.9
Q ss_pred ecccccccchHHHHHHh------------ccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceE
Q psy14686 126 VRRVTKVQIALEQMDYF------------GQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEV 193 (306)
Q Consensus 126 v~nl~~~~~e~~l~~~F------------~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~ 193 (306)
+.+|+..+++++|++.| ++||.|.+++|+++.. ++++|||||+|.++++|++|+. .+|++.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~------~lng~~ 92 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVI------DLNNRW 92 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHH------HHTTCE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHH------HHCCCE
Confidence 46777777777666555 9999999999998864 8999999999999999999997 899999
Q ss_pred ecCcccccccC
Q psy14686 194 INGEDHRTHGT 204 (306)
Q Consensus 194 i~g~~i~v~~~ 204 (306)
+.|+.+++.++
T Consensus 93 ~~Gr~i~v~~s 103 (104)
T 1jmt_A 93 FNGQPIHAELS 103 (104)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEEc
Confidence 99999988754
No 360
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=1e-12 Score=95.22 Aligned_cols=70 Identities=21% Similarity=0.401 Sum_probs=62.9
Q ss_pred cccceeecccccccchHHHHHHhccC----C-------CeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceec
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQY----G-------TIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLE 188 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~~----G-------~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~ 188 (306)
..++++|+|||..+++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+ .
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-------~ 71 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-------A 71 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-------G
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-------h
Confidence 35689999999999999999999999 8 8999998643 789999999999999998 6
Q ss_pred cCceEecCcccccc
Q psy14686 189 VDQEVINGEDHRTH 202 (306)
Q Consensus 189 ~~~~~i~g~~i~v~ 202 (306)
+++..+.|+.+++.
T Consensus 72 l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 72 FDGIIFQGQSLKIR 85 (87)
T ss_dssp GTTCEETTEECEEE
T ss_pred cCCCEECCeEEEEe
Confidence 78888999988876
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=7.4e-13 Score=99.82 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=62.3
Q ss_pred ccccchHHHHHHhccCCCeeEEEEEecCCC--CCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCcc
Q psy14686 130 TKVQIALEQMDYFGQYGTIESVNMVTNKET--GAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQ 206 (306)
Q Consensus 130 ~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~--g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~ 206 (306)
.+...+++|++.|++||.|.+++|++++.+ ++++|+|||+|+++++|++|+. .+|++.+.||.+++.....
T Consensus 24 ~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~------~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 24 EYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQ------GLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHH------HHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHH------HhCCCEeCCCEEEEEEeCH
Confidence 344557899999999999999999988764 4689999999999999999998 8999999999999986543
No 362
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=94.54 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=64.4
Q ss_pred eeecccccccchHH----HHHHhccC-CCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcc
Q psy14686 124 VKVRRVTKVQIALE----QMDYFGQY-GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGED 198 (306)
Q Consensus 124 ~~v~nl~~~~~e~~----l~~~F~~~-G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~ 198 (306)
+||+|||..+++++ |+++|++| |.|.+| ++ |+|||+|.+.++|++|++ .|++..+.||+
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~------~l~G~~l~gr~ 75 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQK------RMENEDVFGNR 75 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHH------HHTTCCSSSSC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHH------HhcCCccCCce
Confidence 88999999999887 55899999 599988 34 999999999999999998 89999999999
Q ss_pred cccccCccccccCC
Q psy14686 199 HRTHGTHQEAKVDG 212 (306)
Q Consensus 199 i~v~~~~~~~~~~~ 212 (306)
+++..+...+..-.
T Consensus 76 i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 76 IIVSFTPKNRELCE 89 (96)
T ss_dssp CEEESSCCSCCCCC
T ss_pred EEEEecCCCcceeE
Confidence 99998877665443
No 363
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=2.3e-12 Score=99.74 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=63.3
Q ss_pred ceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEE-EEEEeCCHHHHHHHHhcCcceeccCceEecC--ccc
Q psy14686 123 EVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGF-AFIEFDDYDVVDKIVLDKVVVLEVDQEVING--EDH 199 (306)
Q Consensus 123 ~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~-aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g--~~i 199 (306)
.++|+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|++|+. .+|+..|.| +.+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~------~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKA------ALNGADIYAGCCTL 94 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHH------HHTTCCCBTTBSEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHH------HhCCCEecCCCeEE
Confidence 3679999999999999999999999999999642 276 9999999999999997 889999987 578
Q ss_pred ccccCccc
Q psy14686 200 RTHGTHQE 207 (306)
Q Consensus 200 ~v~~~~~~ 207 (306)
+|.++...
T Consensus 95 ~V~~Ak~~ 102 (124)
T 2e5i_A 95 KIEYARPT 102 (124)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 88766543
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-11 Score=91.26 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=63.8
Q ss_pred CcEEEEeeccccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccC
Q psy14686 111 GRVVETKRAVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVD 190 (306)
Q Consensus 111 g~~i~v~~~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~ 190 (306)
.+++.|.|..... ..-+..+++++|+++|++||.|.+|+|+ ++++|||||+|++.++|++|+.. ++
T Consensus 10 ~~~~~v~w~~~~~---~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~------~~ 75 (100)
T 2d9o_A 10 TPKLKLKWKCKKE---DESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN------EV 75 (100)
T ss_dssp SCEEEEECCCCSS---CSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT------CC
T ss_pred cceEEEeeeccCc---cCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh------cC
Confidence 3577787754321 1123568999999999999999999997 47899999999999999999973 33
Q ss_pred ceEecCcccccccCccccc
Q psy14686 191 QEVINGEDHRTHGTHQEAK 209 (306)
Q Consensus 191 ~~~i~g~~i~v~~~~~~~~ 209 (306)
+ +.++.++|.++...+.
T Consensus 76 ~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 76 G--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp B--CSSSBCEEECSSCCCC
T ss_pred C--CCCCeEEEEEccCCCC
Confidence 3 4688888887665443
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=4.2e-12 Score=114.85 Aligned_cols=74 Identities=14% Similarity=0.255 Sum_probs=62.3
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccC---Cc-
Q psy14686 40 PESLRKLFIGG--LDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEID---GR- 112 (306)
Q Consensus 40 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~---g~- 112 (306)
..+.++|||+| |+.++||++|+++|++||+|.+|.++. +||||||+|.+.++|++|++. ||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34577999999 578999999999999999999988753 478999999999999999998 888773 45
Q ss_pred -EEEEeec
Q psy14686 113 -VVETKRA 119 (306)
Q Consensus 113 -~i~v~~~ 119 (306)
.+.+.+.
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4666655
No 366
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.28 E-value=3.3e-12 Score=98.79 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=65.6
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccc
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHR 200 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~ 200 (306)
.+++||+|+ .+++++|+++|++||.|.+|++. .++|||||+|.+.++|++|+. .+++..+.|+.++
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~------~lng~~~~g~~l~ 104 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVA------ELNGTQVESVQLK 104 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHH------HHTTCBCSSCBCE
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHH------HhCCCEECCeEEE
Confidence 457999995 69999999999999999999985 567899999999999999997 7888899999999
Q ss_pred cccCcccc
Q psy14686 201 THGTHQEA 208 (306)
Q Consensus 201 v~~~~~~~ 208 (306)
+.++....
T Consensus 105 V~~a~~~~ 112 (121)
T 2bz2_A 105 VNIARKQP 112 (121)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 99876543
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=4.6e-12 Score=108.96 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=67.2
Q ss_pred cccceeeccccccc---------chHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccC
Q psy14686 120 VPREVKVRRVTKVQ---------IALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVD 190 (306)
Q Consensus 120 ~~~~~~v~nl~~~~---------~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~ 190 (306)
..+++||+||+..+ ++++|+++|++||.|++|+|+. ++|||||+|.+.++|+.|+. .|+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~------am~ 200 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKE------AMS 200 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHH------HHT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHH------HhC
Confidence 34689999999998 7999999999999999999984 47899999999999999997 788
Q ss_pred ceEe------------cCcccccccCccccc
Q psy14686 191 QEVI------------NGEDHRTHGTHQEAK 209 (306)
Q Consensus 191 ~~~i------------~g~~i~v~~~~~~~~ 209 (306)
+..+ .|+.+.|.++...+.
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 8888 889999998876543
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=7.5e-12 Score=96.18 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=60.5
Q ss_pred chHHHHHHhccCCCeeEEEEEecCC----CCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCcc
Q psy14686 134 IALEQMDYFGQYGTIESVNMVTNKE----TGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQ 206 (306)
Q Consensus 134 ~e~~l~~~F~~~G~I~~v~v~~d~~----~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~ 206 (306)
.+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|+. .+|++.+.||.+.+.+...
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~------~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ------ALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHH------HHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHH------HHCCCEECCcEEEEEEcCh
Confidence 3799999999999999999999864 46789999999999999999998 8999999999999987543
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.9e-11 Score=93.11 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=65.1
Q ss_pred cccceeeccccccc-----------chHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceec
Q psy14686 120 VPREVKVRRVTKVQ-----------IALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLE 188 (306)
Q Consensus 120 ~~~~~~v~nl~~~~-----------~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~ 188 (306)
..+.+++.|+.... ++++|+++|++||.|.++.| .++ .++|||||+|.+.++|++|+. .
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~------~ 83 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQ------T 83 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHH------H
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHH------H
Confidence 34568888884322 26899999999999999966 553 389999999999999999997 8
Q ss_pred cCceEecCcccccccCcccc
Q psy14686 189 VDQEVINGEDHRTHGTHQEA 208 (306)
Q Consensus 189 ~~~~~i~g~~i~v~~~~~~~ 208 (306)
+|+..+.|+.+++.++....
T Consensus 84 lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp STTCEETTEECEEEECCSCC
T ss_pred cCCCEECCcEEEEEEeCCCC
Confidence 89999999999999875543
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=4.6e-11 Score=91.12 Aligned_cols=77 Identities=9% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCC--CCC--------CHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCcc
Q psy14686 41 ESLRKLFIGGLD--YRT--------NDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEI 109 (306)
Q Consensus 41 ~~~~~l~V~nLp--~~~--------te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~ 109 (306)
.+++.|.+.|+= .+. .++||++.|++||+|.+|.+.++. .+|||||+|.+.++|.+|++. ||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 446788888882 221 235889999999999999997653 589999999999999999998 99999
Q ss_pred CCcEEEEeeccc
Q psy14686 110 DGRVVETKRAVP 121 (306)
Q Consensus 110 ~g~~i~v~~~~~ 121 (306)
.||.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998754
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.07 E-value=7.6e-11 Score=89.91 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=56.3
Q ss_pred chHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCcc
Q psy14686 134 IALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQ 206 (306)
Q Consensus 134 ~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~ 206 (306)
.+++|++.|++||.|.++.|+++. ++|+|||+|.+.++|++|+. .+||+.+.||.+.+.+...
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~------~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVN------ALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHH------HHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHH------HhCCCEECCEEEEEEEEcH
Confidence 378999999999999999997652 58999999999999999998 8999999999999987643
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=5.9e-10 Score=80.25 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCc
Q psy14686 41 ESLRKLFIGGLD----YRTND----DSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGR 112 (306)
Q Consensus 41 ~~~~~l~V~nLp----~~~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~ 112 (306)
++..||+|.-.| .++-+ .+|.+.|++||+|..++++.++ +||+|.+.++|.+|++.+|..+.||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 345688888766 23434 5789999999999999999875 8999999999999999999999999
Q ss_pred EEEEeecccc
Q psy14686 113 VVETKRAVPR 122 (306)
Q Consensus 113 ~i~v~~~~~~ 122 (306)
.|+|..+++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999988764
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=7.5e-10 Score=84.77 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecC-hHHHHHHHHc---CCCccCCcE
Q psy14686 39 EPESLRKLFIGGLDYR-TNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE-SKMVDEAMSN---RPHEIDGRV 113 (306)
Q Consensus 39 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~-~~~a~~Al~~---~~~~~~g~~ 113 (306)
.-..+.-|||+||+++ +++++|+++|++||+|..|.+.++.. .|||.|.+ +++|.+|++. ++..+.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456789999999999 99999999999999999999988764 59999999 7899999887 578888887
Q ss_pred EEEeecc
Q psy14686 114 VETKRAV 120 (306)
Q Consensus 114 i~v~~~~ 120 (306)
+.++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 7776543
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=2.2e-10 Score=103.64 Aligned_cols=65 Identities=6% Similarity=0.190 Sum_probs=55.8
Q ss_pred eccccceeecc--cccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe
Q psy14686 118 RAVPREVKVRR--VTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI 194 (306)
Q Consensus 118 ~~~~~~~~v~n--l~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i 194 (306)
....+++||+| |++.++|++|+++|++||.|.+|.+++ +||||||+|++.++|++|+. .+|+..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~------~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYV------TLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHH------HTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHH------HhCCCcc
Confidence 33446899999 578999999999999999999988753 57899999999999999998 6777666
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=3.5e-09 Score=90.20 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCHHHHHHHhhccCCEEEEEEeeCC----CCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEEeeccccc
Q psy14686 55 TNDDSLKAFFEQWGEIVDVVVMKDP----VTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPRE 123 (306)
Q Consensus 55 ~te~~L~~~F~~~G~i~~v~i~~~~----~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v~~~~~~~ 123 (306)
-.+++|++.|++||+|.++.++++. .+++++|++||+|.+.++|.+|++. +|..+.||.|.+.......
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 4678999999999999999998654 3458999999999999999999998 9999999999999876543
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.8e-09 Score=77.07 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccC
Q psy14686 40 PESLRKLFIGGLDYR-----TND----DSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEID 110 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~ 110 (306)
-++.-||+|.-++.+ +-+ .+|.+.|++||+|..++++.++ +||+|.+.++|.+||+.+|..+.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 344569999888743 322 4688999999999999999875 99999999999999999999999
Q ss_pred CcEEEEeeccc
Q psy14686 111 GRVVETKRAVP 121 (306)
Q Consensus 111 g~~i~v~~~~~ 121 (306)
||.|+|....+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999987543
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.82 E-value=1.9e-08 Score=85.60 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=78.2
Q ss_pred EEEecChHHHHHHHHc--CCCccCCcEEEEeeccccceeecccccccchHHHHHHhccCCCeeEEEEEecCC----CCCc
Q psy14686 89 FITYSESKMVDEAMSN--RPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKE----TGAK 162 (306)
Q Consensus 89 fV~f~~~~~a~~Al~~--~~~~~~g~~i~v~~~~~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~----~g~~ 162 (306)
++-+.+.++..+.++. .+.....+.+.+.... .......-.+++|++.|++||.|.++.|+++.. ++++
T Consensus 100 ~~G~~~~~~l~~~l~~~l~~~~~~s~v~~l~n~v-----~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~ 174 (222)
T 3dxb_A 100 KVGALSKGQLKEFLDANLAGSAMESTVMVLRNMV-----DPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEI 174 (222)
T ss_dssp EESCCCHHHHHHHHHHHSCCSCCBCSEEEEESSC-----CGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCE
T ss_pred eccccChHHHHHHHHhhccccccccccchhhcCC-----CHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCc
Confidence 4445677777777776 3333344444433221 112223345789999999999999999996654 4589
Q ss_pred eEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCc
Q psy14686 163 RGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTH 205 (306)
Q Consensus 163 kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~ 205 (306)
+|++||+|.+.++|++|+. .++|+.+.||.+.+....
T Consensus 175 ~G~~fv~f~~~~~a~~a~~------~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQ------ALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp EEEEEEEESSHHHHHHHHH------HHTTCBSSSSBCEEEECC
T ss_pred eeEEEEEECCHHHHHHHHH------HhcCceECCeEEEEEEcC
Confidence 9999999999999999998 899999999999988754
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.6e-08 Score=77.31 Aligned_cols=75 Identities=11% Similarity=0.025 Sum_probs=60.5
Q ss_pred ccccceeecccccc-cchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCC-HHHHHHHHhcCcceeccCceEecC
Q psy14686 119 AVPREVKVRRVTKV-QIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDD-YDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 119 ~~~~~~~v~nl~~~-~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~-~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
....-++|+|++.. +++++|+++|++||+|.+|.+.++.. .|||+|.+ +++|++|+... ..++..|.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~l----n~~~~~i~g 85 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDA----NNGNLQLRN 85 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHT----TTSCBCTTS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHh----hcCCcEEeC
Confidence 33456889999999 99999999999999999999988765 59999999 78999998732 345666666
Q ss_pred ccccccc
Q psy14686 197 EDHRTHG 203 (306)
Q Consensus 197 ~~i~v~~ 203 (306)
..+++..
T Consensus 86 ~~~~~ev 92 (121)
T 1owx_A 86 KEVTWEV 92 (121)
T ss_dssp SSEEEEE
T ss_pred cEEEEEE
Confidence 6655543
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=4e-08 Score=70.65 Aligned_cols=56 Identities=11% Similarity=0.209 Sum_probs=50.6
Q ss_pred HHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCcc
Q psy14686 136 LEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTHQ 206 (306)
Q Consensus 136 ~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~~ 206 (306)
.+|.+.|++||.|..++++.|+ +||+|.+.++|.+|+ .+|+..+.|+.+++..+..
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi-------~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVL-------SLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGG-------GGTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHH-------hcCCeEeCCeEEEEEeCCC
Confidence 6788999999999999998864 899999999999998 7999999999999986643
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=1.5e-07 Score=68.05 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=49.9
Q ss_pred HHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecCcccccccCc
Q psy14686 136 LEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVINGEDHRTHGTH 205 (306)
Q Consensus 136 ~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g~~i~v~~~~ 205 (306)
.+|.+.|+.||+|..+++..|+ +||+|.+.++|.+|| .+++..+.||.+++.+..
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI-------~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVL-------DVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHH-------HGGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHH-------hcCCeeeCCeEEEEeccC
Confidence 5688999999999999999774 999999999999999 699999999999998654
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1e-05 Score=59.20 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-----cCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcEE
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQ-----WGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVV 114 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~-----~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~i 114 (306)
....++|.|.|||+++.++.|+-+|+. -|+|.++.... +-|+|+|.+.+.|++.|+...+.+++.++
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 345789999999999999999999976 26899987654 25999999999999999998899999999
Q ss_pred EEeeccc---cceeecccccccc
Q psy14686 115 ETKRAVP---REVKVRRVTKVQI 134 (306)
Q Consensus 115 ~v~~~~~---~~~~v~nl~~~~~ 134 (306)
.|.+..+ ..+.+.+|++.+.
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 9988654 4677888887653
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.2e-05 Score=59.37 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHH-HcCCCccCCcEE
Q psy14686 41 ESLRKLFIGGLDYRTNDDSLKAFFEQW-----GEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM-SNRPHEIDGRVV 114 (306)
Q Consensus 41 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al-~~~~~~~~g~~i 114 (306)
+..++|-+=|||.++++..|+.+.+.+ |.+..|.+..|.. =|+|+|.+...|.+|. ..+|..|.||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457899999999999999999999999 9999999998762 3999999999999887 459999999999
Q ss_pred EEee
Q psy14686 115 ETKR 118 (306)
Q Consensus 115 ~v~~ 118 (306)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=3.1e-05 Score=57.13 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=63.9
Q ss_pred ccceeecccccccchHHHHHHhccC-----CCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEec
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQY-----GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN 195 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~-----G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~ 195 (306)
++.+-+-|+|..+++..++.+.+++ |.|..+.+.+|.. =|+|+|.|...|.+|.. .++|..+.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasL------aL~G~ef~ 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLM------ILNGSQFQ 88 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHH------HHSSEEET
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHh------hcCCeeec
Confidence 4667788999999999999999999 9999999998864 59999999999999974 89999999
Q ss_pred Cccccccc
Q psy14686 196 GEDHRTHG 203 (306)
Q Consensus 196 g~~i~v~~ 203 (306)
|+.+++..
T Consensus 89 gr~Lr~gT 96 (117)
T 2l9w_A 89 GKVIRSGT 96 (117)
T ss_dssp TEEEEEEC
T ss_pred CeEEEecC
Confidence 99998764
No 384
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=0.00035 Score=52.64 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=59.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCC-cEEEEee
Q psy14686 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDG-RVVETKR 118 (306)
Q Consensus 40 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g-~~i~v~~ 118 (306)
....+-|-|-+.|+.. -..|...|++||+|.+..... + ...-.|.|.++.+|++||.+||..+.| -.|-|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 4456788999999885 677888999999999888632 2 238999999999999999999999985 5566666
Q ss_pred cc
Q psy14686 119 AV 120 (306)
Q Consensus 119 ~~ 120 (306)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.48 E-value=0.00036 Score=50.37 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc
Q psy14686 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104 (306)
Q Consensus 43 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~ 104 (306)
..-++| ++|+.+...||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+..
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 345556 999999999999999999944 47777765 699999999999999985
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.27 E-value=0.0013 Score=47.28 Aligned_cols=68 Identities=9% Similarity=0.021 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCC--cceEEEEEecChHHHHHHHHc-CCCccCC
Q psy14686 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKR--SRGFGFITYSESKMVDEAMSN-RPHEIDG 111 (306)
Q Consensus 44 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~--~kg~afV~f~~~~~a~~Al~~-~~~~~~g 111 (306)
.+|-|++||+++||+++.+.++...++........+.+.+ .-.-|||.|.+.+++....+. +|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4789999999999999999999998887777765443322 225699999999999988887 7776644
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.09 E-value=0.00094 Score=48.34 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=44.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc
Q psy14686 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104 (306)
Q Consensus 45 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~ 104 (306)
.||+=++|+++...||.++|+.|| -..|+.+.|. -|||.|.+++.|..|+..
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 344449999999999999999999 5567777775 699999999999999985
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0017 Score=47.63 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCeEEEcCCCCCC-CH----HHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc-CCCccCCcEEEE
Q psy14686 43 LRKLFIGGLDYRT-ND----DSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVET 116 (306)
Q Consensus 43 ~~~l~V~nLp~~~-te----~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~-~~~~~~g~~i~v 116 (306)
..+|+|.|||.++ +. +.++++|..|+++......+.. | -.-|.|.++++|.+|-.. ++..+.|+.+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999876 33 4678999999998887766543 2 368999999999999888 999999999999
Q ss_pred eecccc
Q psy14686 117 KRAVPR 122 (306)
Q Consensus 117 ~~~~~~ 122 (306)
-.+++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 887744
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.022 Score=41.52 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=52.4
Q ss_pred cccceeecccccccchHHHHHHhcc---C--CCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEe
Q psy14686 120 VPREVKVRRVTKVQIALEQMDYFGQ---Y--GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVI 194 (306)
Q Consensus 120 ~~~~~~v~nl~~~~~e~~l~~~F~~---~--G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i 194 (306)
..+++.|.|+|....++.|.-+|+. - |.|.+++... +-|+|+|.+.+.|++.|+...+. +
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~-------L 71 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHE-------L 71 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCB-------S
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcce-------e
Confidence 3467899999999999999999987 2 5788888753 25999999999999999643333 4
Q ss_pred cCccccccc
Q psy14686 195 NGEDHRTHG 203 (306)
Q Consensus 195 ~g~~i~v~~ 203 (306)
.+..+.+.+
T Consensus 72 ~~~~LsV~P 80 (104)
T 2dhx_A 72 HGAQLSLRP 80 (104)
T ss_dssp SSSBCEEEE
T ss_pred cCeEEEEEc
Confidence 445555543
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.32 E-value=0.013 Score=42.94 Aligned_cols=75 Identities=8% Similarity=-0.003 Sum_probs=60.5
Q ss_pred ccccceeeccccccc-c----hHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceE
Q psy14686 119 AVPREVKVRRVTKVQ-I----ALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEV 193 (306)
Q Consensus 119 ~~~~~~~v~nl~~~~-~----e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~ 193 (306)
+-|+++.+.|++..+ . .+.++++|..|+.+......+.- .-..|.|.++++|.+|-. .+++..
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~------~Lh~~~ 70 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARL------RLHKTE 70 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHH------TSTTSE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHH------Hhccce
Confidence 346778888998654 3 35778999999999887776543 146899999999999986 889999
Q ss_pred ecCcccccccCc
Q psy14686 194 INGEDHRTHGTH 205 (306)
Q Consensus 194 i~g~~i~v~~~~ 205 (306)
+.|+.+++-++.
T Consensus 71 f~g~~~r~YFgq 82 (104)
T 1wey_A 71 FLGKEMKLYFAQ 82 (104)
T ss_dssp ETTEECEEECCC
T ss_pred ecCceeEEEecC
Confidence 999999998876
No 391
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.25 E-value=0.0027 Score=59.25 Aligned_cols=64 Identities=8% Similarity=0.212 Sum_probs=47.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCc
Q psy14686 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGR 112 (306)
Q Consensus 43 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~ 112 (306)
.|.|+|. .|...++++|.++|++||+|.++.+-.+. | -||.|+|.+.+++..++........+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~~~p~~~~ 116 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGTHTPXXXX 116 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSCCCCCCBC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhccCCCcccc
Confidence 5889997 79999999999999999999999877543 2 599999999999998887754444433
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.20 E-value=0.0048 Score=47.12 Aligned_cols=78 Identities=14% Similarity=0.264 Sum_probs=55.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCEEE-EEEeeC--------CCCC-----CcceEEEEEecChHHHHHHHHcCCCc
Q psy14686 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVD-VVVMKD--------PVTK-----RSRGFGFITYSESKMVDEAMSNRPHE 108 (306)
Q Consensus 43 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~--------~~~g-----~~kg~afV~f~~~~~a~~Al~~~~~~ 108 (306)
...|.|=+.|++ ....+-+.|++||.|.+ +...+. +.+. .....-.|.|.++.+|.+||..||..
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 346778788755 45667789999999876 221110 0001 12346799999999999999999999
Q ss_pred cCCcEEEEeeccc
Q psy14686 109 IDGRVVETKRAVP 121 (306)
Q Consensus 109 ~~g~~i~v~~~~~ 121 (306)
+.|..|-|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9998877877654
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.17 E-value=0.02 Score=43.03 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=46.7
Q ss_pred ccceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC
Q psy14686 121 PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 121 ~~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
+.-+.|-+.|... ...+...|++||+|.+..... + ...-.|.|.++.+|++||. .|+..+.+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL~-------kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKALS-------KDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHHT-------TTTCEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHHH-------hCCeEecC
Confidence 3446677777764 577889999999999888621 2 2389999999999999994 55555543
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.86 E-value=0.016 Score=41.71 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=40.6
Q ss_pred eeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHh
Q psy14686 124 VKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVL 181 (306)
Q Consensus 124 ~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~ 181 (306)
++.-.+|+.+...||.++|+.||.| .|+-+-|- .|||.|.+++.|..|+.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 4444999999999999999999954 34444443 69999999999999986
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.65 E-value=0.056 Score=38.64 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=52.2
Q ss_pred ceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCC--ceEEEEEEeCCHHHHHHHHhcCcceeccCceEec
Q psy14686 123 EVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGA--KRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVIN 195 (306)
Q Consensus 123 ~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~--~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~ 195 (306)
++-|++||+.++|+++.+.++....+........+.+.. .-.-|||.|.+.+++..-.. ..+|..+.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~------~~~g~~F~ 71 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD------RFDGYVFL 71 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH------HHTTCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH------HhCCcEEE
Confidence 578999999999999999999999888887766543222 23569999999999888776 55555443
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.56 E-value=0.011 Score=42.66 Aligned_cols=70 Identities=6% Similarity=-0.062 Sum_probs=48.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCC-CC-cceEEEEEecChHHHHHHHHc-CCCccCC
Q psy14686 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVT-KR-SRGFGFITYSESKMVDEAMSN-RPHEIDG 111 (306)
Q Consensus 42 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~-~kg~afV~f~~~~~a~~Al~~-~~~~~~g 111 (306)
.+-+|.|+.||+++||+++.+.++..-++.....+....+ +. .-.-|||.|.+.++.....+. +|..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3568999999999999999888877655543333222211 11 113589999999999988887 7766543
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.05 E-value=0.028 Score=40.60 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.8
Q ss_pred eeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHh
Q psy14686 124 VKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVL 181 (306)
Q Consensus 124 ~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~ 181 (306)
++.-.+|+.+...||.++|+.||. ..|+-+-|- .|||.|.+++.|..|+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 444489999999999999999993 345554443 69999999999999986
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.13 E-value=0.044 Score=51.07 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=40.0
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHh
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVL 181 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~ 181 (306)
+.++|. .|...++.+|.++|++||.|.++..-.++ | -||.|+|.+.+++++++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 467786 78889999999999999999999876432 3 599999999999998874
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.64 E-value=0.13 Score=37.09 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=48.4
Q ss_pred cceeecccccccchHHHHHHhccCCCeeEEEEEecCCCCC--ceEEEEEEeCCHHHHHHHHhcCcceeccCceEecC
Q psy14686 122 REVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGA--KRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196 (306)
Q Consensus 122 ~~~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~--~kG~aFV~F~~~e~A~~Al~~~~~~~~~~~~~i~g 196 (306)
-++.|+.||+.+||+++.+.++..-.+........+.+-. .-..|||.|.+.++...-.. ..++..+.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~------~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD------RFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH------HSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH------HcCCcEEEe
Confidence 4688999999999999999988876665544433222111 12359999999999988776 556655533
No 400
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=92.52 E-value=0.034 Score=29.67 Aligned_cols=11 Identities=45% Similarity=1.464 Sum_probs=9.5
Q ss_pred heeeccCCccc
Q psy14686 293 KCLCLGHGNCQ 303 (306)
Q Consensus 293 ~~~~~~~~~~~ 303 (306)
-|||++||-|.
T Consensus 20 ecic~~~gycg 30 (30)
T 2ljs_A 20 ECICKGNGYCG 30 (30)
T ss_dssp TCCBCTTSBBC
T ss_pred hheeccCcccC
Confidence 59999999983
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.95 E-value=0.52 Score=44.57 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=43.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHc
Q psy14686 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104 (306)
Q Consensus 43 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~ 104 (306)
...++|+ +|+.+...+|.++|+.||. .+|+.+.+. .|||.|.+++.|..+++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 4466666 9999999999999999995 456666543 699999999999999887
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.52 E-value=0.27 Score=37.41 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=46.1
Q ss_pred eeecccccccchHHHHHHhccCCCeeE-EEEEecC------------CCC-CceEEEEEEeCCHHHHHHHHhcCcceecc
Q psy14686 124 VKVRRVTKVQIALEQMDYFGQYGTIES-VNMVTNK------------ETG-AKRGFAFIEFDDYDVVDKIVLDKVVVLEV 189 (306)
Q Consensus 124 ~~v~nl~~~~~e~~l~~~F~~~G~I~~-v~v~~d~------------~~g-~~kG~aFV~F~~~e~A~~Al~~~~~~~~~ 189 (306)
+.|-+.|... ...+-+.|++||.|.+ +...++. ..+ .....-.|+|+++.+|++|| .-
T Consensus 10 VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-------~~ 81 (132)
T 3p3d_A 10 ILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-------LE 81 (132)
T ss_dssp EEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-------TT
T ss_pred EEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-------Hh
Confidence 5555665544 4667789999999876 3221100 000 12347899999999999999 56
Q ss_pred CceEecCccccccc
Q psy14686 190 DQEVINGEDHRTHG 203 (306)
Q Consensus 190 ~~~~i~g~~i~v~~ 203 (306)
|+..+.|.-+-+.+
T Consensus 82 NG~ii~G~mIGV~P 95 (132)
T 3p3d_A 82 NGAVFNGVLLGVIP 95 (132)
T ss_dssp TTCEETTEECEEEE
T ss_pred CCeEeCcEEEEEEE
Confidence 67777766444443
No 403
>1h9h_I EETI-II, trypsin inhibitor II; hydrolase inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot, hydrolase; 1.5A {Ecballium elaterium} SCOP: g.3.2.1 PDB: 1mcv_I
Probab=77.51 E-value=0.72 Score=25.95 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=11.3
Q ss_pred hheeeccCCcccc
Q psy14686 292 YKCLCLGHGNCQS 304 (306)
Q Consensus 292 ~~~~~~~~~~~~~ 304 (306)
.-|+|+.+|-|.|
T Consensus 17 ~~CvC~~~G~~~~ 29 (36)
T 1h9h_I 17 AGCVCGPNGFCGS 29 (36)
T ss_dssp TTCEECTTSBEEC
T ss_pred ccCeEccCCCcCC
Confidence 4699999999976
No 404
>2po8_A Mcoti-II; oxidative folding intermediate, plant protein; NMR {Momordica cochinchinensis} SCOP: g.3.2.1
Probab=76.13 E-value=0.8 Score=25.44 Aligned_cols=13 Identities=46% Similarity=1.150 Sum_probs=11.0
Q ss_pred hheeeccCCcccc
Q psy14686 292 YKCLCLGHGNCQS 304 (306)
Q Consensus 292 ~~~~~~~~~~~~~ 304 (306)
--|+|+.||-|-+
T Consensus 16 ~~CiC~~~G~CG~ 28 (34)
T 2po8_A 16 GACICRGNGYCGS 28 (34)
T ss_dssp TTEEECTTSBEEE
T ss_pred cCCeEccCccccc
Confidence 4699999999965
No 405
>1lu0_A CMTI-I, trypsin inhibitor I; serine protease inhibitor, metal coordination, hydrolase INH; 1.03A {Cucurbita maxima} SCOP: g.3.2.1 PDB: 2v1v_A 1cti_A 1ppe_I 2cti_A 2sta_I 3cti_A 2btc_I 2stb_I 2eti_A 2it7_A
Probab=71.37 E-value=1.3 Score=23.95 Aligned_cols=11 Identities=55% Similarity=1.503 Sum_probs=9.4
Q ss_pred hheeeccCCcc
Q psy14686 292 YKCLCLGHGNC 302 (306)
Q Consensus 292 ~~~~~~~~~~~ 302 (306)
--|+|+.||-|
T Consensus 18 ~~C~C~~~G~C 28 (29)
T 1lu0_A 18 AECVCLEHGYC 28 (29)
T ss_dssp TTCCBCTTSBB
T ss_pred CCCEEcccccc
Confidence 35999999988
No 406
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=62.95 E-value=3 Score=21.18 Aligned_cols=11 Identities=55% Similarity=1.440 Sum_probs=9.2
Q ss_pred eccCCccccCC
Q psy14686 296 CLGHGNCQSYA 306 (306)
Q Consensus 296 ~~~~~~~~~~~ 306 (306)
|||-|.|..+|
T Consensus 1 clgigscn~fa 11 (26)
T 1rpb_A 1 CLGIGSCNDFA 11 (26)
T ss_dssp CBSCSSBCSSS
T ss_pred CcceecccCcC
Confidence 89999998765
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.73 E-value=13 Score=34.96 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=38.5
Q ss_pred eeecccccccchHHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeCCHHHHHHHHh
Q psy14686 124 VKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVL 181 (306)
Q Consensus 124 ~~v~nl~~~~~e~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~~~e~A~~Al~ 181 (306)
+++-.+|..+...+|.+.|+.||.+ +|+.+.|. .|||.|.+++.|..++.
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHH
Confidence 3333478888899999999999954 45443321 69999999999999886
No 408
>1h9i_I EETI-II, trypsin inhibitor II; hydrolase/inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot; 1.9A {Ecballium elaterium} SCOP: g.3.2.1
Probab=50.81 E-value=5 Score=22.39 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=11.0
Q ss_pred hheeeccCCcccc
Q psy14686 292 YKCLCLGHGNCQS 304 (306)
Q Consensus 292 ~~~~~~~~~~~~~ 304 (306)
.-|+||.++-|.|
T Consensus 17 ~~CvCl~~~~~~~ 29 (36)
T 1h9i_I 17 AGCVCTNNKFCGS 29 (36)
T ss_dssp TTCEECTTSBEEC
T ss_pred cCCEEecCCccCC
Confidence 4599999999976
No 409
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=40.38 E-value=87 Score=22.33 Aligned_cols=48 Identities=8% Similarity=0.212 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHhhc-cC----CEEEEEEeeCCCCCCcceEEEEEecChHHHHHH
Q psy14686 53 YRTNDDSLKAFFEQ-WG----EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101 (306)
Q Consensus 53 ~~~te~~L~~~F~~-~G----~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~A 101 (306)
.+.+..+|++...+ |+ .|.=..+......|++.|||.| |.|.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788888887754 44 2333455566666788888876 5666655544
No 410
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=38.10 E-value=91 Score=22.29 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHhhc-cC----CEEEEEEeeCCCCCCcceEEEEEecChHHHHH
Q psy14686 53 YRTNDDSLKAFFEQ-WG----EIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100 (306)
Q Consensus 53 ~~~te~~L~~~F~~-~G----~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~ 100 (306)
.+.+..+|++...+ |+ .|.=..+......|++.|||.| |.|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 57788899887754 44 2333455666666788888877 556555543
No 411
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=35.75 E-value=1e+02 Score=22.26 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHhhc-cCC----EEEEEEeeCCCCCCcceEEEEEecChHHHHHH
Q psy14686 53 YRTNDDSLKAFFEQ-WGE----IVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101 (306)
Q Consensus 53 ~~~te~~L~~~F~~-~G~----i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~A 101 (306)
.+.+..+|++...+ |+. |.=..+......|++.|||.| |.|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788888887754 442 333345555556788899877 5666665543
No 412
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=32.80 E-value=13 Score=28.48 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=11.1
Q ss_pred hheeeccCCcccc
Q psy14686 292 YKCLCLGHGNCQS 304 (306)
Q Consensus 292 ~~~~~~~~~~~~~ 304 (306)
--|+|+.||-|-|
T Consensus 131 ~~c~c~~~g~cg~ 143 (143)
T 2c4b_A 131 AGCVCGPNGFCGS 143 (143)
T ss_dssp TTCEECTTSBEEC
T ss_pred CCCeEccccccCC
Confidence 4699999999965
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.24 E-value=1.1e+02 Score=24.18 Aligned_cols=46 Identities=7% Similarity=0.135 Sum_probs=31.1
Q ss_pred CCHHHHHHHh--hccCCEEEEEEeeCCCCCCcceEEEEEecC-hHHHHHHHH
Q psy14686 55 TNDDSLKAFF--EQWGEIVDVVVMKDPVTKRSRGFGFITYSE-SKMVDEAMS 103 (306)
Q Consensus 55 ~te~~L~~~F--~~~G~i~~v~i~~~~~~g~~kg~afV~f~~-~~~a~~Al~ 103 (306)
....+|++.| +.|.++. ++...++ .-+.|+|.|.|.+ -.--..|++
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4567899977 8998765 5555554 2378999999965 333344443
No 414
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.44 E-value=1.1e+02 Score=21.07 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCCCceEEEEEEeCC
Q psy14686 147 TIESVNMVTNKETGAKRGFAFIEFDD 172 (306)
Q Consensus 147 ~I~~v~v~~d~~~g~~kG~aFV~F~~ 172 (306)
.|.++++.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887776678999999999986
No 415
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=25.40 E-value=2.2e+02 Score=21.43 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHhhc-cCC----EEEEEEeeCCCCCCcceEEEEEecChHHHHH
Q psy14686 53 YRTNDDSLKAFFEQ-WGE----IVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100 (306)
Q Consensus 53 ~~~te~~L~~~F~~-~G~----i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~ 100 (306)
.+.+..||++-+.. |+. |.=..+......|++.|||.| |.|.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 36788999988854 552 333345566666778888887 456655544
No 416
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.40 E-value=1.8e+02 Score=20.02 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=38.4
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CEEEEEEeeCCCCCCcceEEEEEecChHHHHHHH
Q psy14686 47 FIGGLDYRTNDDSLKAFFEQ-WG-EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM 102 (306)
Q Consensus 47 ~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al 102 (306)
|+=..+...+..++++.+++ || +|.+|+-...+ .|. --|||.+....+|...-
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHH
Confidence 34447789999999999977 66 68888776654 232 25999998877776543
No 417
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.83 E-value=16 Score=28.17 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=17.7
Q ss_pred HHHHHHhccCCCeeEEEEEecCCCCCceEEEEEEeC
Q psy14686 136 LEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFD 171 (306)
Q Consensus 136 ~~l~~~F~~~G~I~~v~v~~d~~~g~~kG~aFV~F~ 171 (306)
+|+.++|...|.|+... ..+|||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 45667777777777553 35789999976
No 418
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.74 E-value=1.4e+02 Score=21.19 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCCCceEEEEEEeCC
Q psy14686 147 TIESVNMVTNKETGAKRGFAFIEFDD 172 (306)
Q Consensus 147 ~I~~v~v~~d~~~g~~kG~aFV~F~~ 172 (306)
.|.+++|.+-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788888776678999999999976
No 419
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.90 E-value=1.5e+02 Score=21.22 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCCCCceEEEEEEeCC
Q psy14686 147 TIESVNMVTNKETGAKRGFAFIEFDD 172 (306)
Q Consensus 147 ~I~~v~v~~d~~~g~~kG~aFV~F~~ 172 (306)
.|..|+|.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 47788887776678999999999986
No 420
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=20.71 E-value=1.5e+02 Score=22.88 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=28.2
Q ss_pred CCHHHHHHHhhccCCEE---EEEEeeCCCCCCcceEEEEE
Q psy14686 55 TNDDSLKAFFEQWGEIV---DVVVMKDPVTKRSRGFGFIT 91 (306)
Q Consensus 55 ~te~~L~~~F~~~G~i~---~v~i~~~~~~g~~kg~afV~ 91 (306)
.|+++|+++-.+.|++. ..++..+..+|+.+.|||-.
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999763 45566664479988888763
No 421
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=20.58 E-value=2e+02 Score=21.96 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHhhc-cCC----EEEEEEeeCCCCCCcceEEEEEecChHHHHHH
Q psy14686 53 YRTNDDSLKAFFEQ-WGE----IVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101 (306)
Q Consensus 53 ~~~te~~L~~~F~~-~G~----i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~A 101 (306)
.+.+..||++.... |+. |.=..+......|++.|||.| |.|.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46788899887765 552 333344455555778888887 4555555443
No 422
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.54 E-value=1.5e+02 Score=20.49 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=21.4
Q ss_pred CEEEEEEeeCCCCCCcceEEEEEecC
Q psy14686 69 EIVDVVVMKDPVTKRSRGFGFITYSE 94 (306)
Q Consensus 69 ~i~~v~i~~~~~~g~~kg~afV~f~~ 94 (306)
+|++|++..-...|+-++||=|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887766578899999999974
No 423
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.46 E-value=1e+02 Score=26.08 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=36.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCc
Q psy14686 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGR 112 (306)
Q Consensus 44 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~ 112 (306)
..+.|+|||..++..-|..++.. +.+....++. -.|-|++.+...|..-.|+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~----------------QkEva~Rl~A~pg~k~yg~ 162 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV----------------QKEVAERMTARPKTPAYGV 162 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE----------------EHHHHHHHTCCTTSTTCSH
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe----------------eeeeeeecccCCCCCcccH
Confidence 46789999999999999999987 5555443333 2356777776666555553
No 424
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=20.45 E-value=1.2e+02 Score=27.22 Aligned_cols=59 Identities=14% Similarity=0.296 Sum_probs=42.5
Q ss_pred EEEcCCCCCC----CHHHHHHHhhccCCEEEEEEeeCCCCCCcceEEEEEecChHHHHHHHHcCCCccCCcE
Q psy14686 46 LFIGGLDYRT----NDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRV 113 (306)
Q Consensus 46 l~V~nLp~~~----te~~L~~~F~~~G~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~Al~~~~~~~~g~~ 113 (306)
-+|||++.-. -...+.++.++||+|..+++-. .-+|...+++.+..++..+...+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 3688876432 2356778888999998888632 346777899999999988666666554
No 425
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.34 E-value=2.1e+02 Score=19.51 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=37.3
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CEEEEEEeeCCCCCCcceEEEEEecChHHHHHH
Q psy14686 47 FIGGLDYRTNDDSLKAFFEQ-WG-EIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101 (306)
Q Consensus 47 ~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~afV~f~~~~~a~~A 101 (306)
|+=..++.++..++++.+++ || +|.+|+-...+ .| .--|+|.+....+|...
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHH
Confidence 44457889999999999976 67 68888776654 23 22589999877765444
Done!