Your job contains 1 sequence.
>psy14686
MKGVMQYIFKLVPGLEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSL
KAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAV
PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV
LDKVVVLEVDQEVINGEDHRTHGTHQEAKVDGVTTTNQTHGTIREVVGMDNSKVVAGEIK
EVGVVSLVVDGVVAKVATVGVDKMLIQSFILLLSIRDLLSYFMCFLLYLSYYKCLCLGHG
NCQSYA
The BLAST search returned 30 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14686
(306 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 433 9.6e-41 1
FB|FBgn0004237 - symbol:Hrb87F "Heterogeneous nuclear rib... 425 6.8e-40 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 378 6.5e-35 1
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 378 6.5e-35 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 377 8.3e-35 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 376 1.1e-34 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 376 1.1e-34 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 375 1.3e-34 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 374 1.7e-34 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 374 1.7e-34 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 374 1.7e-34 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 374 1.7e-34 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 374 1.7e-34 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 374 1.7e-34 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 374 1.7e-34 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 374 1.7e-34 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 374 1.7e-34 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 374 1.7e-34 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 374 1.7e-34 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 374 1.7e-34 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 374 1.7e-34 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 374 1.7e-34 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 374 1.7e-34 1
FB|FBgn0004903 - symbol:Rb97D "Ribonuclear protein at 97D... 374 1.7e-34 1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 374 1.7e-34 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 373 2.2e-34 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 372 2.8e-34 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 372 2.8e-34 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 372 2.8e-34 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 372 2.8e-34 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 371 3.6e-34 1
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 371 3.6e-34 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 371 3.6e-34 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 371 3.6e-34 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 371 3.6e-34 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 371 3.6e-34 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 370 4.6e-34 1
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 370 4.6e-34 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 368 7.4e-34 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 367 9.5e-34 1
UNIPROTKB|D4A2D2 - symbol:D4A2D2 "Uncharacterized protein... 363 2.5e-33 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 359 6.7e-33 1
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 358 8.5e-33 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 357 1.1e-32 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 355 1.8e-32 1
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 355 1.8e-32 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 355 1.8e-32 1
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 355 1.8e-32 1
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 355 1.8e-32 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 355 1.8e-32 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 355 1.8e-32 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 355 1.8e-32 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 351 4.7e-32 1
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 350 6.0e-32 1
UNIPROTKB|D4AD23 - symbol:D4AD23 "Uncharacterized protein... 349 7.7e-32 1
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein... 342 4.2e-31 1
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 338 1.1e-30 1
UNIPROTKB|D4AB76 - symbol:D4AB76 "Uncharacterized protein... 334 3.0e-30 1
UNIPROTKB|F1PVY3 - symbol:F1PVY3 "Uncharacterized protein... 333 3.8e-30 1
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 333 3.8e-30 1
UNIPROTKB|F1Q2T4 - symbol:F1Q2T4 "Uncharacterized protein... 331 6.2e-30 1
UNIPROTKB|F1N4K3 - symbol:F1N4K3 "Uncharacterized protein... 330 7.9e-30 1
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein... 330 7.9e-30 1
UNIPROTKB|F1PGQ0 - symbol:F1PGQ0 "Uncharacterized protein... 325 2.7e-29 1
UNIPROTKB|F1M6S2 - symbol:F1M6S2 "Uncharacterized protein... 323 4.4e-29 1
UNIPROTKB|E2R5N6 - symbol:E2R5N6 "Uncharacterized protein... 321 7.1e-29 1
UNIPROTKB|E2RJS6 - symbol:E2RJS6 "Uncharacterized protein... 321 7.1e-29 1
UNIPROTKB|F1SA35 - symbol:LOC100737421 "Uncharacterized p... 320 9.1e-29 1
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 319 1.2e-28 1
UNIPROTKB|F1LZZ2 - symbol:F1LZZ2 "Uncharacterized protein... 318 1.5e-28 1
UNIPROTKB|D4A6Z0 - symbol:D4A6Z0 "Uncharacterized protein... 318 1.5e-28 1
UNIPROTKB|D4A8U2 - symbol:D4A8U2 "Uncharacterized protein... 317 1.9e-28 1
UNIPROTKB|F1M6C7 - symbol:F1M6C7 "Uncharacterized protein... 316 2.4e-28 1
UNIPROTKB|F1M117 - symbol:F1M117 "Uncharacterized protein... 315 3.1e-28 1
UNIPROTKB|F1M5L3 - symbol:F1M5L3 "Uncharacterized protein... 315 3.1e-28 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 310 1.0e-27 1
UNIPROTKB|E2RJS4 - symbol:E2RJS4 "Uncharacterized protein... 308 1.7e-27 1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ... 308 1.7e-27 1
UNIPROTKB|F1LUM4 - symbol:F1LUM4 "Uncharacterized protein... 306 2.8e-27 1
UNIPROTKB|F1M165 - symbol:F1M165 "Uncharacterized protein... 305 3.5e-27 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 304 4.5e-27 1
FB|FBgn0010258 - symbol:Rbp4 "RNA-binding protein 4" spec... 239 4.9e-27 2
UNIPROTKB|F1LYN9 - symbol:F1LYN9 "Uncharacterized protein... 303 5.7e-27 1
UNIPROTKB|E2RJI3 - symbol:LOC608729 "Uncharacterized prot... 303 5.7e-27 1
UNIPROTKB|D4ACP9 - symbol:D4ACP9 "Uncharacterized protein... 303 5.7e-27 1
UNIPROTKB|F1M4M4 - symbol:F1M4M4 "Uncharacterized protein... 298 1.9e-26 1
UNIPROTKB|E2RF95 - symbol:E2RF95 "Uncharacterized protein... 297 2.5e-26 1
UNIPROTKB|F1SCL3 - symbol:LOC100522980 "Uncharacterized p... 296 3.2e-26 1
UNIPROTKB|F1SCM6 - symbol:LOC100522063 "Uncharacterized p... 296 3.2e-26 1
UNIPROTKB|F1M0H6 - symbol:F1M0H6 "Uncharacterized protein... 296 3.2e-26 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 295 4.0e-26 1
UNIPROTKB|F1LVU1 - symbol:F1LVU1 "Uncharacterized protein... 293 6.6e-26 1
UNIPROTKB|F1MW51 - symbol:F1MW51 "Uncharacterized protein... 290 1.4e-25 1
WB|WBGene00019249 - symbol:H28G03.1 species:6239 "Caenorh... 262 2.1e-25 2
UNIPROTKB|F1LYB2 - symbol:F1LYB2 "Uncharacterized protein... 287 2.9e-25 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 290 3.3e-25 1
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 283 7.6e-25 1
UNIPROTKB|E2RBV8 - symbol:HNRNPA0 "Uncharacterized protei... 283 7.6e-25 1
UNIPROTKB|Q13151 - symbol:HNRNPA0 "Heterogeneous nuclear ... 283 7.6e-25 1
UNIPROTKB|F1RH94 - symbol:HNRNPA0 "Uncharacterized protei... 283 7.6e-25 1
WARNING: Descriptions of 735 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 94/151 (62%), Positives = 111/151 (73%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
+DS +EPE +RKLFIGGLDYRT D++LKA FE+WG IVDVVVMKDP TKRSRGFGFITY
Sbjct: 21 QDS-ITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITY 79
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPREV-----KVRRVTKVQI-AL-----EQM-- 139
S S M+DEA +RPH+IDGRVVE KRAVPR+ V K+ + AL EQ
Sbjct: 80 SHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIR 139
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +G I +N+V +KETG KRGFAF+EF
Sbjct: 140 DYFQHFGNIVDINIVIDKETGKKRGFAFVEF 170
Score = 162 (62.1 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 30/108 (27%), Positives = 66/108 (61%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
++ G VV + + DS + +++KLF+G L ++ S++ +F+ +G IVD+ +
Sbjct: 95 KIDGRVVEPKRAVPRQDIDSP-NAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINI 153
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D T + RGF F+ + + VD+ + + H+++G++V+ K+A+P++
Sbjct: 154 VIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQ 201
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 90/151 (59%), Positives = 109/151 (72%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
+ + +EPE LRKLFIGGLDYRT DD LKA FE+WG IVDVVVMKDP TKRSRGFGFITY
Sbjct: 13 DGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY 72
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---M 139
S+S M+D A + RPH+IDGR VE KRAVPR+ VK V ++ ++
Sbjct: 73 SQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLR 132
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
+YF +G I SVN+V++K+TG KRGFAFIEF
Sbjct: 133 EYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163
Score = 146 (56.5 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 25/82 (30%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GGL +++ L+ +F+ +G+IV V ++ D T + RGF FI + + VD+
Sbjct: 113 TVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKI 172
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I + ++ K+A+ ++
Sbjct: 173 ILQKTHSIKNKTLDVKKAIAKQ 194
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 81/160 (50%), Positives = 106/160 (66%)
Query: 24 LAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKR 83
L + +N A+ EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKR
Sbjct: 16 LCLFLNLALSPK---EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR 72
Query: 84 SRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA--- 135
SRGFGF+TY+ + VD AM+ RPH++DGRVVE KRAV RE R V K+ +
Sbjct: 73 SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIK 132
Query: 136 --LEQ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E+ DYF QYG IE + ++T++ +G KRGFAF+ F
Sbjct: 133 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 172
Score = 154 (59.3 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 97 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 154
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 155 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 203
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 80/157 (50%), Positives = 103/157 (65%)
Query: 27 IINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRG 86
I+ + ++ Q EPE LRKLFIGGL + T DDSL+A FEQWG + D VVMKDP TKRSRG
Sbjct: 16 IVGRMSKEGQPREPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRG 75
Query: 87 FGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----L 136
FGF+TYS V+ +M RPH++DGR+VE KRAV RE + V K+ +
Sbjct: 76 FGFVTYSSVDEVNASMDARPHKVDGRLVEPKRAVSREDSSKPFAHTTVKKIFVGGIKDDT 135
Query: 137 EQ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E+ DYF Q+G IE V ++ + +TG KRGFAF+ F
Sbjct: 136 EENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTF 172
Score = 148 (57.2 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 33/111 (29%), Positives = 65/111 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEP---ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVD 72
+V G +V +++ EDS S+P +++K+F+GG+ T ++ L+ +F+Q+G+I
Sbjct: 97 KVDGRLVEPKRAVSR--EDS--SKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEV 152
Query: 73 VVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
V +M D T RGF F+T+ + VD + + H ++G E ++A+ ++
Sbjct: 153 VEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKALSKQ 203
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 81/162 (50%), Positives = 105/162 (64%)
Query: 22 VPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVT 81
+P A +K EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP T
Sbjct: 13 MPKARRRDKKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT 72
Query: 82 KRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA- 135
KRSRGFGF+TY+ + VD AM+ RPH++DGRVVE KRAV RE R V K+ +
Sbjct: 73 KRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGG 132
Query: 136 ----LEQ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E+ DYF QYG IE + ++T++ +G KRGFAF+ F
Sbjct: 133 IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 174
Score = 154 (59.3 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 99 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 157 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 205
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 79/152 (51%), Positives = 102/152 (67%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+T
Sbjct: 1 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 60
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM-- 139
YS + VD AM RPH++DGRVVE KRAV RE V+ V K+ + E+
Sbjct: 61 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 140 -DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG IE++ ++ ++++G KRGFAF+ F
Sbjct: 121 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 152
Score = 154 (59.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 77 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 134
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 135 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 79/152 (51%), Positives = 102/152 (67%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+T
Sbjct: 1 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 60
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM-- 139
YS + VD AM RPH++DGRVVE KRAV RE V+ V K+ + E+
Sbjct: 61 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 140 -DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG IE++ ++ ++++G KRGFAF+ F
Sbjct: 121 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 152
Score = 154 (59.3 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 77 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 134
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 135 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 155 (59.6 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 154 (59.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 152 (58.6 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQ 184
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 79/151 (52%), Positives = 102/151 (67%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
ED C E E LRKLFIGGL T +++LK F+ QWG++VDVVVM+D TKRSRGFGFITY
Sbjct: 22 EDDIC-ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITY 80
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQ-------M 139
++S MVD A NRPH IDG+ VE KRA+PR + R T + + L+
Sbjct: 81 TKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLR 140
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
+YF Q+G + SV ++T+K TG +RGFAF+EF
Sbjct: 141 EYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF 171
Score = 141 (54.7 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/79 (32%), Positives = 49/79 (62%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
S++KLF+GGL +++ L+ +F Q+G +V V ++ D T + RGF F+ + + VD+A
Sbjct: 121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA 180
Query: 102 MSNRPHEIDGRVVETKRAV 120
+ + H I V+ K+++
Sbjct: 181 ILKKQHAIKYVHVDVKKSI 199
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 77/142 (54%), Positives = 100/142 (70%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KLFIGGL ++T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 2 EPEQLLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA--LEQ---MDYFGQYGTI 148
D AM+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF QYG I
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAVSREDSRRPGAHLTVKKIFVGEDTEEHHLRDYFEQYGKI 121
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
E + ++T++ +G KRGFAF+ F
Sbjct: 122 EVIEIMTDRGSGKKRGFAFVTF 143
Score = 131 (51.2 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 31/109 (28%), Positives = 63/109 (57%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS+ +++K+F+G D T + L+ +FEQ+G+I +
Sbjct: 71 KVDGRVVEPKRAVSR--EDSRRPGAHLTVKKIFVGE-D--TEEHHLRDYFEQYGKIEVIE 125
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 126 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 174
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 77/154 (50%), Positives = 105/154 (68%)
Query: 30 KAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGF 89
++ + + EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF
Sbjct: 19 RSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 78
Query: 90 ITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM 139
+TYS + VD AMS RPH++DGRVVE KRAV RE V+ V K+ + E+
Sbjct: 79 VTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY 138
Query: 140 ---DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
+YF +YG IE++ ++ ++++G KRGFAF+ F
Sbjct: 139 NLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 172
Score = 155 (59.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 97 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 154
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 155 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 203
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 77/145 (53%), Positives = 101/145 (69%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 16 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AMS RPH++DGRVVE KRAV RE V+ V K+ + E+ +YF +Y
Sbjct: 76 DAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ ++++G KRGFAF+ F
Sbjct: 136 GKIETIEVMEDRQSGKKRGFAFVTF 160
Score = 155 (59.6 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 85 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 142
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 143 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 191
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 77/145 (53%), Positives = 101/145 (69%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 4 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AMS RPH++DGRVVE KRAV RE V+ V K+ + E+ +YF +Y
Sbjct: 64 DAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ ++++G KRGFAF+ F
Sbjct: 124 GKIETIEVMEDRQSGKKRGFAFVTF 148
Score = 155 (59.6 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 73 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 130
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 131 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 179
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 78/152 (51%), Positives = 99/152 (65%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME EPE LRKLFIGGL + T +DSL+A FEQWG++ D VVM+DP KRSRGFGF+T
Sbjct: 1 MESRDSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVT 60
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQM-- 139
YS VD AM+ RPH++DGRVVE KRAV RE VK V ++ E+
Sbjct: 61 YSSVSEVDAAMTARPHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHI 120
Query: 140 -DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
+YF YG IE+++++ + TG KRGF F+ F
Sbjct: 121 REYFECYGKIETIDIMEERSTGKKRGFCFVTF 152
Score = 145 (56.1 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 30/109 (27%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS +++K+F+GG+ T + ++ +FE +G+I +
Sbjct: 77 KVDGRVVEPKRAVSR--EDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIETID 134
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M++ T + RGF F+T+ + VD+ ++ + H I+ E ++A+P++
Sbjct: 135 IMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQ 183
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 77/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE +RKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 2 EPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH+++GRVVE KRAV RE R V K+ + E+ DYFGQY
Sbjct: 62 DAAMNARPHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQY 121
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G E + +VT++ +G KRGFAF+ F
Sbjct: 122 GKTEVIEIVTDRGSGKKRGFAFVTF 146
Score = 136 (52.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 29/105 (27%), Positives = 60/105 (57%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ + +++K+F+GG+ T + L+ +F Q+G+ +
Sbjct: 71 KVNGRVVEPKRAVSR--EDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIE 128
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRA 119
++ D + + RGF F+T+ + VD+ + + H ++G E ++A
Sbjct: 129 IVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKA 173
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + E+ DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ ++++G KRGFAF+ F
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 154 (59.3 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 99 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + E+ DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ ++++G KRGFAF+ F
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 154 (59.3 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 99 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + E+ DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ ++++G KRGFAF+ F
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 154 (59.3 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 99 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + E+ DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ ++++G KRGFAF+ F
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 154 (59.3 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 99 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + E+ DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ ++++G KRGFAF+ F
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 154 (59.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 99 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/145 (53%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AM RPH++DGRVVE KRAV RE V+ V K+ + E+ DYF +Y
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ ++++G KRGFAF+ F
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 154 (59.3 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 99 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 77/145 (53%), Positives = 99/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ PH++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 160 (61.4 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 33/109 (30%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H + G E ++A+P++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 79/145 (54%), Positives = 96/145 (66%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL+A FEQWG + D VVM+DP TKRSRGFGF+TYS V
Sbjct: 33 EPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEV 92
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA--LEQMD------YFGQY 145
D AM RPH++DGR VE KRAV RE + V K+ + E D YFGQ+
Sbjct: 93 DAAMDARPHKVDGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQF 152
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+ VN++T K + +RGFAFI F
Sbjct: 153 GKIDEVNIMTEKNSDKRRGFAFITF 177
Score = 156 (60.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 33/101 (32%), Positives = 64/101 (63%)
Query: 33 EDSQCSEP---ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGF 89
EDS S+P +++K+F+GG+ T+++ L+ +F Q+G+I +V +M + + + RGF F
Sbjct: 117 EDS--SKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAF 174
Query: 90 ITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVT 130
IT+ + VD + + H ++G E ++A+ RE ++ RV+
Sbjct: 175 ITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSRE-EMNRVS 214
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 77/152 (50%), Positives = 103/152 (67%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME EPE LRKLFIGGL + T DDSL+ F++WG + D VVM+DP TKRSRGFGF+T
Sbjct: 1 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVT 60
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-LEQ------- 138
YS + VD AM RPH++DGRVVE KRAV RE V+ V K+ + +++
Sbjct: 61 YS-CEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNL 119
Query: 139 MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG IE++ ++ ++++G KRGFAF+ F
Sbjct: 120 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 151
Score = 154 (59.3 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 76 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIE 133
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 134 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 182
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 76/144 (52%), Positives = 100/144 (69%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE +RKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 5 EPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 64
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVT----KVQI-ALEQ-------MDYFGQYG 146
D AM+ RPH++DGRVVE KRAV E R K+ + A+++ DYFGQYG
Sbjct: 65 DAAMNARPHKVDGRVVEPKRAVSIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYG 124
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
E + +VT++ +G KRGFAF+ F
Sbjct: 125 KTEVIEIVTDRGSGKKRGFAFVTF 148
Score = 125 (49.1 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 28/108 (25%), Positives = 57/108 (52%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
+V G VV ++ +EDSQ K+F+G + T + L+ +F Q+G+ + +
Sbjct: 74 KVDGRVVEPKRAVS--IEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEI 131
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGF F+T+ + VD+ + + H ++G E ++A ++
Sbjct: 132 VTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSKQ 179
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 73/140 (52%), Positives = 97/140 (69%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + + VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIA-----LEQ---MDYFGQYGTIES 150
D AM+ RPH++DGRVVE +RAV RE K+ + E+ DY QYG IE
Sbjct: 69 DAAMNARPHKVDGRVVEPERAVSREDSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGKIEV 128
Query: 151 VNMVTNKETGAKRGFAFIEF 170
+ ++T++ +G KRGFAF+ F
Sbjct: 129 IEIMTDRGSGKKRGFAFVTF 148
Score = 113 (44.8 bits), Expect = 0.00023, P = 0.00023
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GG+ T + L+ + EQ+G+I + +M D + + RGF F+T+ + VD+ +
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 105 RPHEID 110
+ H ++
Sbjct: 161 KYHTVN 166
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 75/145 (51%), Positives = 98/145 (67%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKL IGGL + T DDSL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 3 EPEQLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 62
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D A+ RPH++DGRVVE KRAV RE V+ V K+ + E+ DYF +Y
Sbjct: 63 DAAVCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 122
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ ++ + ++G KRGFAF+ F
Sbjct: 123 GKIETIEVMEDSQSGKKRGFAFVTF 147
Score = 155 (59.6 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 72 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 129
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 130 VMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKALSKQ 178
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 71/145 (48%), Positives = 101/145 (69%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL ++T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 147 (56.8 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 25/82 (30%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +F ++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 158 VLQKYHTINGHNAEVRKALSRQ 179
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 72/150 (48%), Positives = 102/150 (68%)
Query: 34 DSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYS 93
+S E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 7 ESDWREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 66
Query: 94 ESKMVDEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MD 140
VD AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ D
Sbjct: 67 SMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 126
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
YF +YG I+++ ++T++++G KRGF F+ F
Sbjct: 127 YFEEYGKIDTIEIITDRQSGKKRGFGFVTF 156
Score = 153 (58.9 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 106 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 165
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 166 VLQKYHTINGHNAEVRKALSRQ 187
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/145 (48%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 154 (59.3 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKHHTINGHNAEVRKALSRQ 191
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/145 (48%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 153 (58.9 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 158 VLQKYHTINGHNAEVRKALSRQ 179
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/145 (48%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 153 (58.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQ 191
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/145 (48%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 153 (58.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQ 191
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/145 (48%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 153 (58.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQ 191
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/145 (48%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 15 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 74
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 75 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 134
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 135 GKIDTIEIITDRQSGKKRGFGFVTF 159
Score = 153 (58.9 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 169 VLQKYHTINGHNAEVRKALSRQ 190
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/145 (48%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 15 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 74
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 75 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 134
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 135 GKIDTIEIITDRQSGKKRGFGFVTF 159
Score = 153 (58.9 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 169 VLQKYHTINGHNAEVRKALSRQ 190
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/145 (48%), Positives = 100/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 152 (58.6 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 26/82 (31%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ H I+G E ++A+ R+
Sbjct: 170 FLQKYHTINGHNAEVRKALSRQ 191
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 70/145 (48%), Positives = 99/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G ++++ ++T++++G KRGF F F
Sbjct: 136 GKVDTIEIITDRQSGKKRGFGFFTF 160
Score = 149 (57.5 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/82 (30%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G++ + ++ D + + RGFGF T+ + VD+
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQ 191
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 78/159 (49%), Positives = 103/159 (64%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFE-------QWGEIVDVVVMKDPVTKRS 84
ME EPE LRKLFIGGL + T DDSL+ FE +WG + D VVM+DP TKRS
Sbjct: 1 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRS 60
Query: 85 RGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-LEQ 138
RGFGF+TYS + VD AM RPH++DGRVVE KRAV RE V+ V K+ + +++
Sbjct: 61 RGFGFVTYS-CEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKE 119
Query: 139 -------MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG IE++ ++ ++++G KRGFAF+ F
Sbjct: 120 DTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 158
Score = 154 (59.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 83 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIE 140
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+A+ ++
Sbjct: 141 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 189
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 73/144 (50%), Positives = 97/144 (67%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIG L + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-LEQ------MDYFGQYG 146
D AM+ RP +++GRVVE KRAV RE R V K+ + +++ DYF QYG
Sbjct: 69 DAAMNARPQKVNGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEHHLRDYFEQYG 128
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
E + ++T++ G KRGFAF+ F
Sbjct: 129 KTEVIEIMTDRGRGKKRGFAFVTF 152
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 31/103 (30%), Positives = 58/103 (56%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+ +
Sbjct: 78 KVNGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDT-EHHLRDYFEQYGKTEVIE 134
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117
+M D + RGF F+T+ + VD+ + + H ++G ET+
Sbjct: 135 IMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCETR 177
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 76/145 (52%), Positives = 97/145 (66%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E LRKLFIGGL + T D+SL++ FEQWG + D VVM DP TKRSRGFGF+TY+ + V
Sbjct: 18 ELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEV 76
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RP ++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 77 DAAMNARPQKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 136
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFAF+ F
Sbjct: 137 GKIEVIEIMTDRGSGKKRGFAFVTF 161
Score = 144 (55.7 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 31/106 (29%), Positives = 61/106 (57%)
Query: 19 GTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMK 77
G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I + +M
Sbjct: 89 GRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT 146
Query: 78 DPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
D + + RGF F+T+ + VD+ + + H +G E ++A+ ++
Sbjct: 147 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRKALSKQ 192
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 70/145 (48%), Positives = 99/145 (68%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E KLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFCKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVVE KRAV RE V V++ V ++ E+ DYF +Y
Sbjct: 64 DVAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 124 GKIDTIEIITDRQSG-KRGFGFVTF 147
Score = 137 (53.3 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 25/82 (30%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKI 156
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H +G E ++A+ R+
Sbjct: 157 VLQKYHTKNGHNAEVRKALSRQ 178
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 71/148 (47%), Positives = 100/148 (67%)
Query: 32 MEDSQCS-EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFI 90
M S+ + EPE L KLFIGGL ++T D+SL++ FEQWG + D V M+DP K SRGFGF+
Sbjct: 1 MSKSESTKEPEQLWKLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFV 59
Query: 91 TYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIALEQMD---YF 142
TY+ + +D AM+ RPH++DG VVE KRAV RE R V K+ + +++ +F
Sbjct: 60 TYTTVEELDAAMNARPHKVDGGVVEPKRAVSREDSPRPGAHLTVKKIFVGVKEDTEGHHF 119
Query: 143 GQYGTIESVNMVTNKETGAKRGFAFIEF 170
QYG IE + ++T++ +G KRGFAF+ F
Sbjct: 120 EQYGKIEVIEIMTDRGSGKKRGFAFVTF 147
Score = 112 (44.5 bits), Expect = 0.00043, P = 0.00043
Identities = 29/109 (26%), Positives = 57/109 (52%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS +++K+F+G +D+ FEQ+G+I +
Sbjct: 77 KVDGGVVEPKRAVSR--EDSPRPGAHLTVKKIFVG-----VKEDTEGHHFEQYGKIEVIE 129
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD + + H ++G E ++A+ +
Sbjct: 130 IMTDRGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRKALSNQ 178
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 71/144 (49%), Positives = 96/144 (66%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L+KLFIGGL + T D+SL++ FE WG + VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEV 67
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIALEQMDYFGQYG 146
D AM+ RPH++DGRVVE KRAV RE + V+++ K DYF +YG
Sbjct: 68 DAAMNARPHKVDGRVVEPKRAVSREDSQTLDAHLTVKKIFVGGIKENTEDHLRDYF-EYG 126
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
IE + ++T++ +G KRGF F+ F
Sbjct: 127 KIEVIEIMTDRGSGKKRGFTFVTF 150
Score = 136 (52.9 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 32/109 (29%), Positives = 65/109 (59%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ + +++K+F+GG+ T +D L+ +FE +G+I +
Sbjct: 77 KVDGRVVEPKRAVSR--EDSQTLDAHLTVKKIFVGGIKENT-EDHLRDYFE-YGKIEVIE 132
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 133 IMTDRGSGKKRGFTFVTFDDHDSVDKIIQ-KYHTVNGHNCEVRKALSKQ 180
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 68/145 (46%), Positives = 91/145 (62%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE+LRK+F+GGL T DD ++ F+ Q+GEI D++VM+DP TKRSRGFGF+T+S V
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIA-----------LEQM--DYFGQY 145
D AM RPH IDG+ V+ KRAVPR+ K R + V E M +YF +Y
Sbjct: 78 DAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKY 137
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
GT+ ++ +K T RGF F+ F
Sbjct: 138 GTVTKSEIILDKATQKPRGFGFVTF 162
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 22/92 (23%), Positives = 51/92 (55%)
Query: 33 EDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
+D SE S ++L++ G+ +D L +F ++G + ++ D T++ RGFGF+T
Sbjct: 102 DDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ + VD+ + + H ++G + ++ + ++
Sbjct: 162 FDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKD 193
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 74/145 (51%), Positives = 95/145 (65%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T ++SL++ FEQWG + D VVM+DP TK SRGFGF+TY+ K V
Sbjct: 9 EPEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D A R H++DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAA---RSHKVDGRVVEPKRAVSREDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQY 125
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G KRGFA + F
Sbjct: 126 GKIEVIEIMTDRGSGKKRGFASVTF 150
Score = 124 (48.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/109 (26%), Positives = 62/109 (56%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ ++RK+F+GG+ T + L+ +F+Q+G+I +
Sbjct: 75 KVDGRVVEPKRAVSR--EDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIE 132
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF +T+ + D+ + + + ++G E ++A+ ++
Sbjct: 133 IMTDRGSGKKRGFASVTFDDHDK-DKIVIQKYYIVNGHNCEVRKALSKQ 180
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 64/148 (43%), Positives = 101/148 (68%)
Query: 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSES 95
Q E E +RKLFIGGL ++T ++SL+ +++QWGE+ D VV++D ++RSRG GF+T+S
Sbjct: 1 QQKEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSV 60
Query: 96 KMVDEAMSNRPHEIDGRVVETKRAVPREVKVRR-----VTKVQIA-----LEQ---MDYF 142
VD AM+ RPH IDGRV+E +RA+PRE +R + K+ + E+ +YF
Sbjct: 61 TEVDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYF 120
Query: 143 GQYGTIESVNMVTNKETGAKRGFAFIEF 170
+YG I+++ ++T++++G KRGF F+ F
Sbjct: 121 EKYGKIDAIEIITDRQSGRKRGFGFVTF 148
Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/79 (34%), Positives = 51/79 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+L+KLF+GG+ T + L+ +FE++G+I + ++ D + R RGFGF+T+ + VD+
Sbjct: 98 TLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKI 157
Query: 102 MSNRPHEIDGRVVETKRAV 120
+ + H I+G E ++A+
Sbjct: 158 VLQKYHAINGHHAEVRKAL 176
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 70/143 (48%), Positives = 93/143 (65%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E L KLFI GL + T D+SL++ FE+WG + D VVM+DP TKR RGFGF+TY+ + VD
Sbjct: 4 EQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDA 63
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIALEQMD--------YFGQYGT 147
AM+ RPH++DGRVVE KRAV RE R V K+ + + D YF QYG
Sbjct: 64 AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGK 123
Query: 148 IESVNMVTNKETGAKRGFAFIEF 170
IE + ++T++ +G KRGF F+ F
Sbjct: 124 IEVIEIMTDRGSGQKRGFVFVTF 146
Score = 145 (56.1 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/109 (28%), Positives = 63/109 (57%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+G + T + L+ +FEQ+G+I +
Sbjct: 71 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIE 128
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 129 IMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 177
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 73/145 (50%), Positives = 95/145 (65%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KLFIGGL + T ++SL++ FEQWG D VVM+DP TKRSRG GF+ Y+ + V
Sbjct: 9 EPEQLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM+ RPH +DGRVVE KRAV RE R V K+ + E+ DYF QY
Sbjct: 69 DAAMNARPH-VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 127
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T++ +G K+GFAF+ F
Sbjct: 128 GKIEVIEIMTDRGSG-KKGFAFVTF 151
Score = 144 (55.7 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 35/128 (27%), Positives = 70/128 (54%)
Query: 17 VAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I + +
Sbjct: 78 VDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 135
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIA 135
M D + + +GF F+T+ + VD+ + + H ++G E ++A+ ++ ++ + Q
Sbjct: 136 MTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKALSKQ-EMASASSTQRD 193
Query: 136 LEQMDYFG 143
L FG
Sbjct: 194 LSGSGNFG 201
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 75/153 (49%), Positives = 96/153 (62%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFI- 90
ME EPE LRKLFIG L + T DDSL+ FE+WG + D VVM+D KRSR FGF+
Sbjct: 6 MEGHDPKEPEQLRKLFIGCLSFETTDDSLREHFEKWGTL-DCVVMRDLQIKRSRSFGFVS 64
Query: 91 TYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM- 139
TYS K VD AM RPH++DG VVE KRAV RE V+ V K+ + E+
Sbjct: 65 TYSCVKEVDAAMCARPHKVDGHVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN 124
Query: 140 --DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG IE + ++ ++++G KRGFAF+ F
Sbjct: 125 LRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTF 157
Score = 147 (56.8 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 34/109 (31%), Positives = 66/109 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 82 KVDGHVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEIIE 139
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + + H I+G E K+AV ++
Sbjct: 140 VMEDRQSGKKRGFAFVTFDDHDTVDKIVQ-KYHTINGHNYEVKKAVSKQ 187
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 68/144 (47%), Positives = 96/144 (66%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
PE L+KLFIGG + T D+SL++ F+Q G + D VVM+DP TKRSRGFGF+TY+ + VD
Sbjct: 10 PEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVD 69
Query: 100 EAMSNRPHEIDGRVVETKRAVPRE--------VKVRRVTK--VQIALEQ---MDYFGQYG 146
AM RPH++DGRVVE KR +E + V+++ ++ E+ DYF QYG
Sbjct: 70 PAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYG 129
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
IE + ++T++ +G KRGFAF+ F
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTF 153
Score = 146 (56.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 33/109 (30%), Positives = 62/109 (56%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +K EDSQ +++K+F GG+ T + L+ +FEQ+G+I +
Sbjct: 78 KVDGRVVEPKRTSSK--EDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQ 184
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 68/143 (47%), Positives = 93/143 (65%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KLFI GL + T D+SL++ FEQWG + VVM+DP TKRSRGFGF+ ++ + V
Sbjct: 9 EPEQLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA------LEQMDYFGQYGT 147
D AM+ RP++++GRV+E KR V RE R V K+ + E DYF QYG
Sbjct: 69 DAAMNARPNKVNGRVLEPKRFVSREDSQRPAAYLTVKKIFVGGIKEDTEEHEDYFEQYGK 128
Query: 148 IESVNMVTNKETGAKRGFAFIEF 170
E + ++T++ +G KRGFAF+ F
Sbjct: 129 FEVIEVMTDQGSGKKRGFAFVTF 151
Score = 132 (51.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/109 (27%), Positives = 61/109 (55%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G V+ +++ EDSQ +++K+F+GG+ T + + +FEQ+G+ +
Sbjct: 78 KVNGRVLEPKRFVSR--EDSQRPAAYLTVKKIFVGGIKEDTEEH--EDYFEQYGKFEVIE 133
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM D + + RGF F+T+ VD+ + + H ++G E ++A+ ++
Sbjct: 134 VMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKALLKQ 182
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 65/143 (45%), Positives = 94/143 (65%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E KLFIGGL RT + SL+ +++QWG++ D VV++DP KRSRGFGF+T+S VD
Sbjct: 18 EQFHKLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDA 77
Query: 101 AMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQYGT 147
AM+ RPH +DG+VV+ KRAV RE VK V ++ E+ DYF +YG
Sbjct: 78 AMAARPHSVDGKVVDPKRAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDYFEKYGK 137
Query: 148 IESVNMVTNKETGAKRGFAFIEF 170
I+++ ++T++++G KRGF F+ F
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTF 160
Score = 148 (57.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 26/82 (31%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 110 AVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E +A+ R+
Sbjct: 170 VLQKYHTINGHHAEVGKALSRQ 191
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 65/145 (44%), Positives = 98/145 (67%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E +RKLFIGGL T ++SLK +++QWGE+ D VV++ +++SRGFGF+T+S V
Sbjct: 16 ENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR--VTKVQIALEQ---MDYFGQY 145
D AM+ RPH IDGRVV+ KRAV RE V V++ V ++ E+ +YF +Y
Sbjct: 76 DAAMAARPHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I+++ ++T++++G KRGF F+ F
Sbjct: 136 GKIDAIEIITDRQSGKKRGFGFVTF 160
Score = 156 (60.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 32/107 (29%), Positives = 62/107 (57%)
Query: 17 VAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVM 76
+ G VV +++ + Q S +++KLF+GG+ T + L+ +FE++G+I + ++
Sbjct: 86 IDGRVVDPKRAVSREKSEKQGSLV-NVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEII 144
Query: 77 KDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
D + + RGFGF+T+ + VD+ M + H I+G E +A+ R+
Sbjct: 145 TDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALSRQ 191
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 70/154 (45%), Positives = 94/154 (61%)
Query: 30 KAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGF 89
+ ME EPE LRKLFIGGL + T D SL+ FE+WG + D VVM+DP K SRGF F
Sbjct: 23 RGMEGHDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSF 82
Query: 90 ITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKV-----RRVTKVQIA-----LEQM 139
+TYS + V M RPH++ G VVE KRAV RE + V K+ + E+
Sbjct: 83 VTYSCVEEVGAVMCARPHKVVGCVVEPKRAVSREDSIIPGAHLMVEKIFVGGIKEDTEEY 142
Query: 140 ---DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG IE++ ++ ++++G KRGFAF+ F
Sbjct: 143 NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 176
Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/103 (30%), Positives = 57/103 (55%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPESL-RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 101 KVVGCVVEPKRAVSR--EDSIIPGAHLMVEKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 158
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117
VM+D + + RGF F+T+ VD+ + + H ++G E K
Sbjct: 159 VMEDRQSGKKRGFAFVTFDNHDTVDKVVQ-KYHTVNGHNCEVK 200
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 72/152 (47%), Positives = 97/152 (63%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME EPE RKLFIGGL + T DDSL+ F+ W + D VVM+DP T+RSRGFGF+
Sbjct: 1 MEGHDPKEPEQRRKLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFV- 58
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM-- 139
YS + VD AM RPH++DG VVE KRA+ RE V+ V K+ + E+
Sbjct: 59 YSCVEEVDAAMCARPHKVDGHVVEPKRAISREDSVKPGAHLMVKKIFVGGIKEDTEEYNL 118
Query: 140 -DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG I+++ +V ++++G KRGFAF+ F
Sbjct: 119 RDYF-EYGNIKTIEVVEDRQSGKKRGFAFLTF 149
Score = 105 (42.0 bits), Expect = 0.00056, P = 0.00056
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV I++ EDS + ++K+F+GG+ T + +L+ +FE +G I +
Sbjct: 75 KVDGHVVEPKRAISR--EDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFE-YGNIKTIE 131
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDE 100
V++D + + RGF F+T+ + VD+
Sbjct: 132 VVEDRQSGKKRGFAFLTFDDHDTVDK 157
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 71/152 (46%), Positives = 94/152 (61%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME EPE LRKLFIGGL + DDSL+ FE+WG + D VVM+DP TKRSR F F+T
Sbjct: 1 MEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVT 60
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM-- 139
YS K VD AM +PH +DGRVVE KRAV RE V+ V K+ + E+
Sbjct: 61 YSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 140 -DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG I+++ ++ ++ +G +R F+ F
Sbjct: 121 RDYFEKYGKIKTMEVMEDRLSGKER-LLFVTF 151
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 69/144 (47%), Positives = 94/144 (65%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
PE LRKLFIGGL ++T ++SL++ FEQW + D V M+DP TKRSRGFGF+TY+ + VD
Sbjct: 1 PEQLRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVD 60
Query: 100 EAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ---MDYFGQYG 146
AM+ RPH++DG VE KRAV RE VK V ++ E+ DYF YG
Sbjct: 61 AAMNARPHKVDGSFVEPKRAVSREDSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHYG 120
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
IE + ++T++ +G K+ FAF+ F
Sbjct: 121 KIEVIEIMTDRGSG-KKEFAFVTF 143
Score = 109 (43.4 bits), Expect = 0.00076, P = 0.00076
Identities = 26/102 (25%), Positives = 55/102 (53%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G+ V +++ EDSQ +++++ +GG+ T + L+ +FE +G+I +
Sbjct: 69 KVDGSFVEPKRAVSR--EDSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEVIE 126
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVET 116
+M D + + F F+T+ + VD+ + + H ++G ET
Sbjct: 127 IMTDRGSGKKE-FAFVTFDDHDSVDKIVIQKYHTVNGHNCET 167
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 74/154 (48%), Positives = 93/154 (60%)
Query: 30 KAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGF 89
+ ME EPE LRKLFIGGL + T DDSL+ FE+ G + D VVM+DP TK SRGFGF
Sbjct: 22 RRMEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGF 81
Query: 90 ITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM 139
+T S + VD AM RPH++DGRVVE KRAV RE V+ V K+ + E+
Sbjct: 82 VTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEY 141
Query: 140 ---DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG E++ + KRGFAF+ F
Sbjct: 142 NLRDYFEKYGKTETIE--GRQAEWEKRGFAFVTF 173
Score = 124 (48.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/109 (27%), Positives = 62/109 (56%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + ++K+F+GG+ T + +L+ +FE++G+ + +
Sbjct: 100 KVDGRVVEPKRAVSR--EDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGK-TETI 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ ++ RGF F+T+ + VD+ + + H I+G E KRA+ ++
Sbjct: 157 EGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALSKQ 204
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 74/154 (48%), Positives = 93/154 (60%)
Query: 30 KAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGF 89
+ ME EPE LRKLFIGGL + T DDSL+ FE+ G + D VVM+DP TK SRGFGF
Sbjct: 22 RRMEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGF 81
Query: 90 ITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM 139
+T S + VD AM RPH++DGRVVE KRAV RE V+ V K+ + E+
Sbjct: 82 VTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEY 141
Query: 140 ---DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG E++ + KRGFAF+ F
Sbjct: 142 NLRDYFEKYGKTETIE--GRQAEWEKRGFAFVTF 173
Score = 124 (48.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/109 (27%), Positives = 62/109 (56%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + ++K+F+GG+ T + +L+ +FE++G+ + +
Sbjct: 100 KVDGRVVEPKRAVSR--EDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGK-TETI 156
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ ++ RGF F+T+ + VD+ + + H I+G E KRA+ ++
Sbjct: 157 EGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALSKQ 204
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
SE E L KLF+GGL+ +T +D L+++FEQ+G + D VV+++ +RSR FGF+TYS S+
Sbjct: 2 SEMEKLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEE 61
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQMD---YFGQ 144
D AM+ RPH +DG+ VE KRAV RE R +V K+ + +E+ D +F Q
Sbjct: 62 ADAAMAARPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQ 121
Query: 145 YGTIESVNMVTNKETGAKRGFAFIEF 170
+G IE ++T+K+TG KRGF F+ F
Sbjct: 122 FGMIEKSEVITDKDTGKKRGFGFVHF 147
Score = 149 (57.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 32/99 (32%), Positives = 55/99 (55%)
Query: 28 INKAMEDSQCSEPESL---RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRS 84
+ +A+ PE+L +K+F+GGL + L FF Q+G I V+ D T +
Sbjct: 80 VKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKK 139
Query: 85 RGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
RGFGF+ + ++ D+A+ + H I+G VE K+A+ ++
Sbjct: 140 RGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQ 178
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 71/156 (45%), Positives = 98/156 (62%)
Query: 31 AMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFI 90
+M +S +PE L+KLFIGGL + T ++SL++ FEQ G + D V M+DP TK SRGFGF+
Sbjct: 16 SMSESP-KDPEQLQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFV 74
Query: 91 TYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR---RVTKVQIALEQ--------- 138
TY+ + VD A + RPH++D RVVE KRAV RE R +T + E+
Sbjct: 75 TYATMEEVDAATNARPHKVD-RVVEPKRAVSREDSQRPGAHLTMKKKEEEEEEEDDNNTE 133
Query: 139 ----MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF QYG IE + ++T++ +G KRGFAF+ F
Sbjct: 134 EYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 169
Score = 123 (48.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 24/88 (27%), Positives = 50/88 (56%)
Query: 52 DYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDG 111
D T + L+ +FEQ+G+I + +M D + + RGF F+T+ + VD+ + + H ++G
Sbjct: 129 DNNTEEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG 188
Query: 112 RVVETKRAVPR-EVKVRRVTKVQIALEQ 138
E ++A+ + E+ + ++ LE+
Sbjct: 189 HNCEVRKALSKQEMASASAKEAKVVLER 216
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE 123
D AM+ RPH++DGRVVE KRAV RE
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSRE 93
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 66/138 (47%), Positives = 89/138 (64%)
Query: 46 LFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNR 105
L IGGL + T DDSL+ E+WG + D VVM DP T+ SRGFGF+TYS + VD AM
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 106 PHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQYGTIESVN 152
PH++DGRVVE KRAV RE V+ V K+ + E+ DYF +YG IE++
Sbjct: 61 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 120
Query: 153 MVTNKETGAKRGFAFIEF 170
++ ++++G KRGFAF+ F
Sbjct: 121 VMEDRQSGKKRGFAFVTF 138
Score = 148 (57.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 33/109 (30%), Positives = 64/109 (58%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + +++K+F+GG+ T + +L+ +FE++G+I +
Sbjct: 63 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 120
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
VM+D + + RGF F+T+ + VD+ + H I+ E K+AV ++
Sbjct: 121 VMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQ 169
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 67/151 (44%), Positives = 99/151 (65%)
Query: 27 IINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRG 86
II+K+ EPE LRKLFIGGL +RT ++SL++ FEQW ++ VVM+DP T+RSRG
Sbjct: 1 IISKS---ESLKEPEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRG 57
Query: 87 FGFITYSESKMVDEAMSNRPHEIDGRVV---ETKR-AVPREVKVRRVTKVQIALEQ---M 139
GF TY+ + +D AM+ RPH++DGRVV +++R VK+ V+ ++ E+
Sbjct: 58 SGFDTYTTVEEMDAAMNARPHKVDGRVVSREDSQRPGAHLTVKIFIVSGIKEDTEEHHLR 117
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF QY IE + ++T++ + KR FAF+ F
Sbjct: 118 DYFEQYRKIEVIEIMTDRGSRKKRDFAFVTF 148
Score = 126 (49.4 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 33 EDSQCSEPESLRKLFI-GGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
EDSQ K+FI G+ T + L+ +FEQ+ +I + +M D +++ R F F+T
Sbjct: 88 EDSQRPGAHLTVKIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVT 147
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ E VD+ + H ++G E ++A+ ++
Sbjct: 148 FDEHDSVDKIFIQKYHTVNGHNCEVRKALSKQ 179
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 68/142 (47%), Positives = 93/142 (65%)
Query: 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVD-VVVMKDPVTKRSRGFGFITYSESKMVDEA 101
L KLF+GGL+ +T D+ L+A FEQ+G++ D VVVM P+ +RSR FGF+TYS ++ D A
Sbjct: 5 LCKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPL-QRSRCFGFVTYSSTEEADAA 63
Query: 102 MSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIALEQM-DYFGQYGTI 148
MS RPH +DG V+ KRAV RE KV+++ K I E + DYF Q+G I
Sbjct: 64 MSARPHIVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPI 123
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
E ++T+K+TG KRGF F+ F
Sbjct: 124 EKAQVITDKDTGKKRGFGFVYF 145
Score = 153 (58.9 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/99 (32%), Positives = 56/99 (56%)
Query: 28 INKAMEDSQCSEPESL---RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRS 84
+ +A+ +PE L +K+F+GGL D+ L+ +F Q+G I V+ D T +
Sbjct: 78 LKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKK 137
Query: 85 RGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
RGFGF+ + ++ D+A+ + H I G VE K+A+ ++
Sbjct: 138 RGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALTKQ 176
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 239 (89.2 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 43/83 (51%), Positives = 60/83 (72%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E LRK+FIGGL +T ++L+ FF Q+G + D VV++DPV+ SRGFGF+TY + K V+
Sbjct: 29 EHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEI 88
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
RPH ID ++VETK A+PR+
Sbjct: 89 VQRARPHTIDNKIVETKHALPRQ 111
Score = 125 (49.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+++F+GGL +++ ++ +F Q+G + V ++ D T R R FGF+ + + ++A++
Sbjct: 136 KRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALA 195
Query: 104 NRPHEIDGRVVETKRAVPR 122
R H I +VE KR+ +
Sbjct: 196 PRKHWILQTLVEVKRSTQK 214
Score = 89 (36.4 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
+YF Q+G + SV ++ ++ETG +R F F+EF
Sbjct: 154 EYFSQFGPVASVKLLMDRETGRQRAFGFLEF 184
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 67/139 (48%), Positives = 88/139 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLFIGGL + T D SL++ FEQW + D V+M+DP +KRSRGFG I Y+ + VD AM+
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 105 RPHEIDGRVVETKRAVPREVKVR-----RVTKVQIALEQMD--------YFGQYGTIESV 151
RPH++DGRVVE K AV RE R V K+ + + D YF QYG IE +
Sbjct: 61 RPHKVDGRVVEPKVAVSREDSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVI 120
Query: 152 NMVTNKETGAKRGFAFIEF 170
++T+ +G KRGFAF+ F
Sbjct: 121 EIMTDIGSGKKRGFAFVTF 139
Score = 146 (56.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 31/109 (28%), Positives = 62/109 (56%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV + +++ EDS +++K+F+GG T + L+ +FEQ+G+I +
Sbjct: 64 KVDGRVVEPKVAVSR--EDSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVIE 121
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD + + H ++G E ++A+ ++
Sbjct: 122 IMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKALLKQ 170
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 71/146 (48%), Positives = 93/146 (63%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KLFI GL +T D+SL++ EQ G ++D VVM+DP TK SRGFGF TY+ + V
Sbjct: 9 EPEQLWKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYF-GQ 144
D M+ RPH++DGRVVE KRAV RE R V K+ + E+ DYF Q
Sbjct: 69 DAVMNARPHKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQ 128
Query: 145 YGTIESVNMVTNKETGAKRGFAFIEF 170
Y IE + ++T++ +G KRGFAF+ F
Sbjct: 129 YEKIEVIEIMTDRGSGKKRGFAFVTF 154
Score = 139 (54.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 32/107 (29%), Positives = 61/107 (57%)
Query: 19 GTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKA-FFEQWGEIVDVVVM 76
G VV +++ EDSQ +++K+F+GG+ T + LK FFEQ+ +I + +M
Sbjct: 81 GRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIM 138
Query: 77 KDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 139 TDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEVRKALSKQ 185
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 75/153 (49%), Positives = 93/153 (60%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME E E L KLFIGGL + T+DDSL+ FEQW + VVM DP TKRSR FGF+T
Sbjct: 1 MEGHNPKEQEQLSKLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVT 59
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVT-----KVQIA-----LEQ--- 138
YS K VD AM RPH++DG VVE KR RE V+ V K+ I E+
Sbjct: 60 YSCVKEVDAAMCARPHKVDGCVVEPKRPF-REDSVKPVVCLLAKKIFIGGIKEDTEEHNL 118
Query: 139 MDYFGQYGTIESVN-MVTNKETGAKRGFAFIEF 170
DYF +YG IE++ M ++++G KRGFAF+ F
Sbjct: 119 RDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTF 151
Score = 126 (49.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/81 (29%), Positives = 49/81 (60%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMK-DPVTKRSRGFGFITYSESKMVDEAM 102
+K+FIGG+ T + +L+ +FE++G+I + +M+ D + RGF F+T+ + VD+ +
Sbjct: 102 KKIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIV 161
Query: 103 SNRPHEIDGRVVETKRAVPRE 123
+ H I+ + K+A ++
Sbjct: 162 VQKCHTINRHNCDVKKAPSKQ 182
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 65/150 (43%), Positives = 97/150 (64%)
Query: 27 IINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRG 86
II+K+ EPE LRKLFIGGL +RT ++SL++ FEQW ++ VVM+DP T+RSRG
Sbjct: 5 IISKS---ESLKEPEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRG 61
Query: 87 FGFITYSESKMVDEAMSNRPHEIDGRVV--ETKRAVPREVKVRR-VTKVQIALEQ---MD 140
GF TY+ + +D AM+ RPH++DGRVV E + + V+ ++ ++ E+ D
Sbjct: 62 SGFDTYTTVEEMDAAMNARPHKVDGRVVSREDSQRPGAHLTVKIFISGIKEDTEEHHLRD 121
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
YF QY IE + ++T++ + KR FAF+ F
Sbjct: 122 YFEQYRKIEVIEIMTDRGSRKKRDFAFVTF 151
Score = 135 (52.6 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
EDSQ K+FI G+ T + L+ +FEQ+ +I + +M D +++ R F F+T+
Sbjct: 92 EDSQRPGAHLTVKIFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTF 151
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
E VD+ + H ++G E ++A+ ++
Sbjct: 152 DEHDSVDKIFIQKYHTVNGHNCEVRKALSKQ 182
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 73/155 (47%), Positives = 96/155 (61%)
Query: 32 MEDSQCS-EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFI 90
M S+ S +PE LRKLFIGGL ++SL++ EQWG + D VV +DP TK SRGFGFI
Sbjct: 1 MSKSESSKDPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFI 60
Query: 91 TYSESKM--VDEAMSNRPHEIDGRVVETKRAVPRE----------VKVRRVTKVQIALEQ 138
T + + + VD AM+ RPH++DGRVVE KRAV RE VK V ++ E+
Sbjct: 61 TCTTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKTFVGGIKEDTEE 120
Query: 139 ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF QYG IE + ++ + +G KR FAF+ F
Sbjct: 121 HHLRDYFEQYGKIEVIEIMIDPGSG-KRSFAFVTF 154
Score = 146 (56.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 33/109 (30%), Positives = 63/109 (57%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K F+GG+ T + L+ +FEQ+G+I +
Sbjct: 80 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKIEVIE 137
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M DP + + R F F+T+ + VD+ + + H ++G E K+A+ ++
Sbjct: 138 IMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVKKALSKQ 185
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 63/145 (43%), Positives = 94/145 (64%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL T ++SL+ +++QWG++ D VV++DP ++RSRGFGF+ +S V
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR---VTKVQIAL--------EQ--MDYFGQY 145
D AM+ RPH IDGRVV +KR VPRE + VT ++ + E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
GTI+++ ++ +++G K F F+ F
Sbjct: 136 GTIDAIEII--RQSGRKTAFGFVTF 158
Score = 124 (48.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/107 (25%), Positives = 58/107 (54%)
Query: 17 VAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVM 76
+ G VV ++ + E + + +KLF+GG+ T + L+ +FE++G I + ++
Sbjct: 86 IDGRVVASKRVVPRE-ESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEII 144
Query: 77 KDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ + R FGF+T+ + VD+ + + H I+G + ++A+ R+
Sbjct: 145 RQ--SGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQ 189
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 63/145 (43%), Positives = 94/145 (64%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL T ++SL+ +++QWG++ D VV++DP ++RSRGFGF+ +S V
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR---VTKVQIAL--------EQ--MDYFGQY 145
D AM+ RPH IDGRVV +KR VPRE + VT ++ + E+ DYF +Y
Sbjct: 76 DAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
GTI+++ ++ +++G K F F+ F
Sbjct: 136 GTIDAIEII--RQSGRKTAFGFVTF 158
Score = 124 (48.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/107 (25%), Positives = 58/107 (54%)
Query: 17 VAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVM 76
+ G VV ++ + E + + +KLF+GG+ T + L+ +FE++G I + ++
Sbjct: 86 IDGRVVASKRVVPRE-ESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEII 144
Query: 77 KDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ + R FGF+T+ + VD+ + + H I+G + ++A+ R+
Sbjct: 145 RQ--SGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQ 189
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 72/145 (49%), Positives = 92/145 (63%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T DDSL+ F++ G + D VVM+DP TK SRGFGF+TYS + V
Sbjct: 27 EPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEV 86
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM---DYFGQY 145
D AM H++DGRVVE K+AV RE V+ V K + E+ DYF +Y
Sbjct: 87 DAAMCAWLHKVDGRVVEPKKAVSREDSVKLGAHLMVKKTFVGGIKEDTEEYNLKDYFEKY 146
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE+ M N+++G +RGFAF F
Sbjct: 147 GKIETEGM-ENRQSG-RRGFAFAIF 169
Score = 110 (43.8 bits), Expect = 0.00098, P = 0.00098
Identities = 32/108 (29%), Positives = 60/108 (55%)
Query: 16 EVAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDS + ++K F+GG+ T + +LK +FE++G+I +
Sbjct: 96 KVDGRVVEPKKAVSR--EDSVKLGAHLMVKKTFVGGIKEDTEEYNLKDYFEKYGKI-ETE 152
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPR 122
M++ + R RGF F + + VD+ + + H I+G E K+A+ +
Sbjct: 153 GMENRQSGR-RGFAFAIFGDHD-VDKIVVQKHHTINGHNCEVKKALSK 198
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 65/141 (46%), Positives = 88/141 (62%)
Query: 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM 102
L KLF+GGL+ +T DD L+ FEQ+G++ D VV+++ KRSR FGF+TYS D AM
Sbjct: 9 LCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAM 68
Query: 103 SNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIALEQM-DYFGQYGTIE 149
S RPH +DG VE KRAV RE KV+++ K I + + D F Q+G +E
Sbjct: 69 SARPHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVE 128
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
++T+KETG KRGF F+ F
Sbjct: 129 KAEVITDKETGKKRGFGFVYF 149
Score = 153 (58.9 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 32/99 (32%), Positives = 57/99 (57%)
Query: 28 INKAMEDSQCSEPESL---RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRS 84
+ +A+ +PE+L +K+FIGGL +D L+ F Q+G + V+ D T +
Sbjct: 82 LKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKK 141
Query: 85 RGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
RGFGF+ + ++ D+A+ + H I+G VE K+A+ ++
Sbjct: 142 RGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALTKQ 180
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 68/144 (47%), Positives = 94/144 (65%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LR+LFIGGL + T +DSL+ FE G + D VVM+DP + FGF+TYS + V
Sbjct: 2 EPEQLRRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRDP-----QSFGFVTYSCVEEV 55
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR---RVT-KVQIA-----LEQM---DYFGQYG 146
D AM RPH++DGRVVE KRAV RE V+ +T K+ + E+ DYF +YG
Sbjct: 56 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKIFVGGIKEDAEEYNLRDYFEKYG 115
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
IE++ ++ ++++G KRGFAF+ F
Sbjct: 116 KIETIEVMEDRQSGKKRGFAFVTF 139
Score = 140 (54.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/108 (29%), Positives = 61/108 (56%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
+V G VV +++ EDS K+F+GG+ + +L+ +FE++G+I + V
Sbjct: 65 KVDGRVVEPKRAVSR--EDSVKPGAHLTVKIFVGGIKEDAEEYNLRDYFEKYGKIETIEV 122
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
M+D + + RGF F+T+ + VD+ + N H I+G E ++A+ ++
Sbjct: 123 MEDRQSGKKRGFAFVTFDDHDTVDKIVVNY-HTINGHNCEVRKALSKQ 169
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 74/153 (48%), Positives = 96/153 (62%)
Query: 32 MEDSQC-SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFI 90
M +S+ EPE LRKLFIGGL + T D+SL++ FEQ G + D VV +DP KRSRGFGF+
Sbjct: 1 MSESESPKEPEQLRKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFV 60
Query: 91 TYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRR-----VTKVQIA-----LEQ-- 138
TY+ V+E + RPH +D RVVE K A+ RE R V KV + E+
Sbjct: 61 TYAT---VEE-VKGRPH-VDERVVEPKWAISREDSQRPGAHLPVKKVFVGGIKEDTEEHH 115
Query: 139 -MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF QYG IE + ++T++ +G KRGFAFI F
Sbjct: 116 LRDYFEQYGRIEVIEIMTDQGSG-KRGFAFILF 147
Score = 123 (48.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 33 EDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
EDSQ ++K+F+GG+ T + L+ +FEQ+G I + +M D + + RGF FI
Sbjct: 88 EDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFIL 146
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ + +D+ + + H +G E ++A+ ++
Sbjct: 147 FDDHDSIDKIVIQKYHTGNGLNCEVRKALSKQ 178
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 262 (97.3 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 46/92 (50%), Positives = 65/92 (70%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
M Q P LRKLFIGGL + T D+ L +F QWG +VD +V++DP TK SRGFGF+T
Sbjct: 58 MGQYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVT 117
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
++ + AM++RPH++ G+ V++KRA+PRE
Sbjct: 118 FASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 149
Score = 41 (19.5 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFI 168
YF +GT++ V ++ G RG F+
Sbjct: 188 YFETFGTLDQVEIL-----GQPRGLGFV 210
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 68/152 (44%), Positives = 94/152 (61%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
ME E E L KLFIG L + T DDSL+ E+W + D VVM+DP+ +RS GFGF+T
Sbjct: 12 MEGHDPKESEHLTKLFIGYLSFETTDDSLREHSEKW-TLTDCVVMRDPLFERSSGFGFVT 70
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQM-- 139
YS + VD AM RPH++DGRVV RAV RE V+ V K+ + E+
Sbjct: 71 YSCVEEVDAAMCARPHKVDGRVVGP-RAVSREDSVKPGTHLTVKKIFVGGVREDREEYNL 129
Query: 140 -DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +YG I +++++ ++++G KRGFAF+ F
Sbjct: 130 KDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTF 161
Score = 137 (53.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ + +LK +FE++G+I + VM+D + + RGF F+T+ + VD+
Sbjct: 111 TVKKIFVGGVREDREEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKI 170
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ H I+G E K+ + ++
Sbjct: 171 AVQKYHTINGHNCEMKKVLSKQ 192
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 290 (107.1 bits), Expect = 3.3e-25, P = 3.3e-25
Identities = 55/134 (41%), Positives = 88/134 (65%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL++ T DDSL+ +FEQ+GE++D VM+D T RSRGFGF+T+ K V+E MS
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS- 222
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIA--------LEQMDYFGQYGTIESVNMVTN 156
+ H +DG++++ KRA+PRE + + K+ + E ++F Q+G + ++ +
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQ-EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMD 281
Query: 157 KETGAKRGFAFIEF 170
K+TG RGF F+ +
Sbjct: 282 KDTGRPRGFGFVTY 295
Score = 170 (64.9 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E K+F+GG+ ++ + FF Q+G ++D +M D T R RGFGF+TY V
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 99 DEAMSNRPHEIDGRVVETKRAVPR 122
+ MS I G+ VE KRA P+
Sbjct: 302 EATMSQPYITIHGKPVEVKRATPK 325
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/145 (42%), Positives = 90/145 (62%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E L KLFIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 7 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 66
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIAL-EQMDYFGQY 145
D AM+ PH +DG VE KRAV RE KV+++ K +A + +++F Q+
Sbjct: 67 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 126
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
GT+E ++ +K++G KRGF F+ F
Sbjct: 127 GTVEKAEIIADKQSGKKRGFGFVYF 151
Score = 143 (55.4 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 77 VDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEI 134
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E
Sbjct: 135 IADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 182
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/145 (42%), Positives = 90/145 (62%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E L KLFIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIAL-EQMDYFGQY 145
D AM+ PH +DG VE KRAV RE KV+++ K +A + +++F Q+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
GT+E ++ +K++G KRGF F+ F
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYF 146
Score = 143 (55.4 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 72 VDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEI 129
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E
Sbjct: 130 IADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/145 (42%), Positives = 90/145 (62%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E L KLFIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIAL-EQMDYFGQY 145
D AM+ PH +DG VE KRAV RE KV+++ K +A + +++F Q+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
GT+E ++ +K++G KRGF F+ F
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYF 146
Score = 143 (55.4 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 72 VDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEI 129
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E
Sbjct: 130 IADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/145 (42%), Positives = 90/145 (62%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E L KLFIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 7 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 66
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIAL-EQMDYFGQY 145
D AM+ PH +DG VE KRAV RE KV+++ K +A + +++F Q+
Sbjct: 67 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 126
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
GT+E ++ +K++G KRGF F+ F
Sbjct: 127 GTVEKAEIIADKQSGKKRGFGFVYF 151
Score = 143 (55.4 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 77 VDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEI 134
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E
Sbjct: 135 IADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 182
>UNIPROTKB|E2REM2 [details] [associations]
symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
Length = 207
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 54/85 (63%), Positives = 67/85 (78%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L+KLFIGGL + T D+SL++ FE WG + VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEV 67
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE 123
D AM+ RPH++DGRVVE KRAV RE
Sbjct: 68 DAAMNARPHKVDGRVVEPKRAVSRE 92
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 61/145 (42%), Positives = 89/145 (61%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E KLFIG L T ++SL ++ QWG + D V+++DP +++SR FGFIT+S +
Sbjct: 16 ENEQFCKLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAEL 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRR-----VTKVQIALEQMDYFGQY 145
D AM+ RPH IDG++V KRAVPRE + V++ +T+ DYF +Y
Sbjct: 76 DAAMAARPHFIDGKMVMPKRAVPREDHGKLGALITVKKLFVGGITEDMKEHHLRDYFEKY 135
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G I ++ +VT+ ++G KRGF FI F
Sbjct: 136 GKINAIEIVTDGQSGKKRGFGFITF 160
Score = 147 (56.8 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 26/82 (31%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ + L+ +FE++G+I + ++ D + + RGFGFIT+ + VD+
Sbjct: 110 TVKKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKI 169
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 170 VLQKNHTINGHRAEVRKALSRQ 191
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 51/77 (66%), Positives = 63/77 (81%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVE 115
D AM+ RPH++DGRVVE
Sbjct: 69 DAAMNARPHKVDGRVVE 85
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 61/131 (46%), Positives = 84/131 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLFIGGL + T + ++ FEQ G + D VV +DP TKRSRGFGF+TY+ + VD AM+
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 105 RPHEIDGRVVETKRAVPREVKVRR--VTKVQIALEQ---MDYFGQYGTIESVNMVTNKET 159
RPH++D RVVE RAV RE R V ++ E+ + + QYG IE + ++T++
Sbjct: 61 RPHKVDARVVEPNRAVSREDSQRPGFVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGL 120
Query: 160 GAKRGFAFIEF 170
G KR FAF+ F
Sbjct: 121 GKKRDFAFVTF 131
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 56/142 (39%), Positives = 88/142 (61%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T+ +SL+ +F ++G+I + +VMKDP T+RSRGFGF+T+S+ VD
Sbjct: 25 PNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQ----------IALEQM-DYFGQYGTI 148
+ ++ HE+DG+ V+ K A PR + VT+ + LE + YF Q+G I
Sbjct: 85 KVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPI 144
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
E ++ +K+T RGF F+ F
Sbjct: 145 EDAMLMFDKQTNRHRGFGFVTF 166
Score = 188 (71.2 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K++FEQ+G I D ++M D T R RGFGF+T+ +VD+
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 178 IHFHEINNKMVECKKAQPKEV 198
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/145 (41%), Positives = 89/145 (61%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E L KLFIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIAL-EQMDYFGQY 145
D AM+ PH +DG VE KRAV RE KV+++ K +A + +++F Q+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G +E ++ +K++G KRGF F+ F
Sbjct: 122 GAVEKAEIIADKQSGKKRGFGFVYF 146
Score = 143 (55.4 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 72 VDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEI 129
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E
Sbjct: 130 IADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 66/145 (45%), Positives = 89/145 (61%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L+KLFI GL + D+SL+ FEQWG + D VVM+DP TK SRGFG + + V
Sbjct: 9 EPEQLQKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAM-----EEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQ---MDYFGQY 145
D AM++RP ++ RV+E KRAV +E R V K+ + E+ DYF QY
Sbjct: 64 DAAMNSRPCKVGRRVLEPKRAVSQEDSPRPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQY 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + +T++ +G KRGFAF+ F
Sbjct: 124 GKIEVIESMTDRGSGKKRGFAFVTF 148
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + L+ +FEQ+G+I + M D + + RGF F+T+ + VD+
Sbjct: 98 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKI 157
Query: 102 MSNRPHEIDG--RVV 114
+ + H +G RVV
Sbjct: 158 VIQKYHAANGHNRVV 172
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 62/143 (43%), Positives = 89/143 (62%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KL IGGL ++T +SL+ FE+WG D VVM+DP TKRSR GF+TY+ + V
Sbjct: 18 EPEQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEV 77
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIA----------LEQ---MDYFGQY 145
D AM+ RP ++DGR+V+ KRAV RE R T++ + E+ DYF Y
Sbjct: 78 DAAMNARPQKMDGRLVKPKRAVSREDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHY 137
Query: 146 GTIESVNMVTNKETGAKRGFAFI 168
G I+ + ++T++ +G K+ FA +
Sbjct: 138 GKIDMIEIMTDRSSG-KKEFALV 159
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 67/154 (43%), Positives = 94/154 (61%)
Query: 32 MEDSQCS-EPESLRKLFIGGLDYRTNDDSLK--AFFEQWGEIVDVVVMKDPVTKRSRGFG 88
M S+ S EPE L+KLF+GGL + +SL + FEQWG + D VVM+DP TKRSRGFG
Sbjct: 1 MSKSESSKEPEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFG 60
Query: 89 FITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE-------VKVRR--VTKVQIALEQ- 138
F+TY+ + VD AM+ RPH++ GR VE KRA ++ + +++ V V+ E+
Sbjct: 61 FVTYATVEEVDAAMNARPHKVGGRAVEPKRAGSKDSQRPGAHLTMKKIFVGGVKEDTEEH 120
Query: 139 --MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DY Q G E + T++ +G KR FAF+ F
Sbjct: 121 RLRDYLEQNGKTEVTEITTDRGSG-KRDFAFVTF 153
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 226 (84.6 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 37/88 (42%), Positives = 61/88 (69%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRR 128
+++RPH +DGR ++ K PR ++ R
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPER 94
Score = 187 (70.9 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 29 NKAMEDSQCSEP--ESLR--KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRS 84
++ E Q EP E+ R K+F+GG+ + + LK +F ++G + +VV++ D +R
Sbjct: 95 SRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRP 154
Query: 85 RGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVK 125
RGFGFIT+ + + VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 155 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 195
Score = 68 (29.0 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 129 ELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITF 162
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 54/137 (39%), Positives = 86/137 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T ++L+ +F ++GE+ + +VM+DP TKR+RGFGFIT+ + VD+ ++N
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQ----------IALEQM-DYFGQYGTIESVNM 153
R HE+DG+ ++ K A P+ + + VTK + LE M YF YG +E +
Sbjct: 106 REHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAML 165
Query: 154 VTNKETGAKRGFAFIEF 170
+ +K T RGF F+ F
Sbjct: 166 MFDKATQRHRGFGFVTF 182
Score = 187 (70.9 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 33/81 (40%), Positives = 55/81 (67%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+FIGGL + + +K +FE +G++ D ++M D T+R RGFGF+T+ ++ D+
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+G++VE K+A P+EV
Sbjct: 194 IHFHEINGKMVECKKAQPKEV 214
>UNIPROTKB|F1M0Q5 [details] [associations]
symbol:F1M0Q5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00559641
ProteinModelPortal:F1M0Q5 Ensembl:ENSRNOT00000036216 Uniprot:F1M0Q5
Length = 165
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 60/137 (43%), Positives = 85/137 (62%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KL IGGL ++T +SL+ FE+WG D VVM+DP TKRSR GF+TY+ + V
Sbjct: 28 EPEQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEV 87
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIA----------LEQ---MDYFGQY 145
D AM+ RP ++DGR+V+ KRAV RE R T++ + E+ DYF Y
Sbjct: 88 DAAMNARPQKMDGRLVKPKRAVSREDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHY 147
Query: 146 GTIESVNMVTNKETGAK 162
G I+ + ++T++ +G K
Sbjct: 148 GKIDMIEIMTDRSSGKK 164
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 63/141 (44%), Positives = 88/141 (62%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLF GGL++ T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 16 EPEQLRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEV 75
Query: 99 DEAMSNR-PHEI-DGRVV--ETKRAVPREVKVRR--VTKVQIALEQ---MDYFGQYGTIE 149
D R E+ + R V E + + V++ V ++ E+ DY QYG IE
Sbjct: 76 DRKDHTRWMEELWNLRAVSREDSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIE 135
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
V ++T++ +G K GFAF+ F
Sbjct: 136 VVEIMTDRGSGKKGGFAFVTF 156
Score = 138 (53.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 33 EDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
EDSQ +++K+F+GG+ T + L+ + EQ+G+I V +M D + + GF F+T
Sbjct: 96 EDSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVT 155
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ + VD+ + + H ++G E ++A+ ++
Sbjct: 156 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 187
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 271 (100.5 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 51/137 (37%), Positives = 86/137 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T++++ VD+ ++
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQ-----------IALEQMDYFGQYGTIESVNM 153
HE+D + ++ K A PR + + VT+ + + + YF Q+G +E +
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141
Query: 154 VTNKETGAKRGFAFIEF 170
+ +K T RGF F+ F
Sbjct: 142 MFDKTTNRHRGFGFVTF 158
Score = 185 (70.2 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 170 IHFHEINNKMVECKKAQPKEV 190
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 56/157 (35%), Positives = 95/157 (60%)
Query: 25 AMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRS 84
+ + + ++ DSQ +P K+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRS
Sbjct: 6 SQVTSGSLNDSQ-HDPG---KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRS 61
Query: 85 RGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQ----------- 133
RGFGFIT+++ VD+ ++ HE+D + ++ K A PR + + VT+ +
Sbjct: 62 RGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAST 121
Query: 134 IALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
+ + YF Q+G +E ++ +K T RGF F+ F
Sbjct: 122 VVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
Score = 184 (69.8 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 170 IHFHEINNKMVECKKAQPKEV 190
>UNIPROTKB|L7N074 [details] [associations]
symbol:L7N074 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03002768
Ensembl:ENSCAFT00000009744 Uniprot:L7N074
Length = 204
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 61/131 (46%), Positives = 81/131 (61%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFI L + T + SL+ EQWG + + +VM+DP TK SRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIRVLSFETTNRSLRNPLEQWGTLTNCMVMRDPDTKCSRGFGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKE 158
D AM+ RPH++DGRVVETKRAV RE R + ++++ Y G GT NK
Sbjct: 69 DPAMNTRPHKVDGRVVETKRAVSREDSQR--PGAHLTVKKIFYSG--GTYNDFGNYNNKS 124
Query: 159 T--GAKRGFAF 167
+ G +G F
Sbjct: 125 SNFGPLKGGNF 135
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 227 (85.0 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 38/91 (41%), Positives = 62/91 (68%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S + + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + +
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVKVRR 128
V +++RPH +DGR ++ K PR ++ R
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPER 94
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 66 (28.3 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 227 (85.0 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 38/91 (41%), Positives = 62/91 (68%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S + + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + +
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVKVRR 128
V +++RPH +DGR ++ K PR ++ R
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPER 94
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 66 (28.3 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 227 (85.0 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 38/91 (41%), Positives = 62/91 (68%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S + + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + +
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVKVRR 128
V +++RPH +DGR ++ K PR ++ R
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPER 94
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 66 (28.3 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
>UNIPROTKB|F1PD64 [details] [associations]
symbol:F1PD64 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03002771
Ensembl:ENSCAFT00000021102 Uniprot:F1PD64
Length = 256
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 50/85 (58%), Positives = 64/85 (75%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KLFI GL + T ++SL++ FEQWG + D V M+DP TK SRG GF+TY+ + V
Sbjct: 9 EPEQLWKLFIRGLSFETTNESLRSHFEQWGTLTDWVAMRDPNTKHSRGLGFVTYATVEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE 123
D AM+ RPH++DGRVVE KRAV R+
Sbjct: 69 DAAMNTRPHKVDGRVVEPKRAVSRQ 93
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 226 (84.6 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 37/88 (42%), Positives = 61/88 (69%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRR 128
+++RPH +DGR ++ K PR ++ R
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPER 94
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 106 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 165
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 166 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 193
Score = 66 (28.3 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 127 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 160
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 226 (84.6 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 37/88 (42%), Positives = 61/88 (69%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRR 128
+++RPH +DGR ++ K PR ++ R
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPER 94
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 107 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 66 (28.3 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 226 (84.6 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 37/88 (42%), Positives = 61/88 (69%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRR 128
+++RPH +DGR ++ K PR ++ R
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPER 94
Score = 185 (70.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 107 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 66 (28.3 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 51/137 (37%), Positives = 84/137 (61%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD+ +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQ-----------IALEQMDYFGQYGTIESVNM 153
HE+D + ++ K A PR + + VT+ + + + YF Q+G +E +
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141
Query: 154 VTNKETGAKRGFAFIEF 170
+ +K T RGF F+ F
Sbjct: 142 MFDKTTNRHRGFGFVTF 158
Score = 185 (70.2 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 170 IHFHEINNKMVECKKAQPKEV 190
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 51/137 (37%), Positives = 84/137 (61%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD+ +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQ-----------IALEQMDYFGQYGTIESVNM 153
HE+D + ++ K A PR + + VT+ + + + YF Q+G +E +
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141
Query: 154 VTNKETGAKRGFAFIEF 170
+ +K T RGF F+ F
Sbjct: 142 MFDKTTNRHRGFGFVTF 158
Score = 185 (70.2 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 170 IHFHEINNKMVECKKAQPKEV 190
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 224 (83.9 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 37/84 (44%), Positives = 59/84 (70%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V +++
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 105 RPHEIDGRVVETKRAVPREVKVRR 128
RPH +DGR ++ K PR ++ R
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPER 84
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 97 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 156
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 157 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 184
Score = 66 (28.3 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 118 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 151
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 52/137 (37%), Positives = 83/137 (60%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+LRKLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 53 ALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 112
Query: 102 MSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIA--------LEQMDYFGQYGTIESVNM 153
+++RPH +DGR ++ K+ PR + K+ + E +YF ++G + V M
Sbjct: 113 LASRPHTLDGRNIDPKQKGPRSDNSKS-NKIFVGGIPHNCGETELREYFKKFGVVTEVVM 171
Query: 154 VTNKETGAKRGFAFIEF 170
+ + E RGF FI F
Sbjct: 172 IYDAEKQRPRGFGFITF 188
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 134 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 193
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 194 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 221
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 224 (83.9 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 37/84 (44%), Positives = 59/84 (70%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V +++
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 105 RPHEIDGRVVETKRAVPREVKVRR 128
RPH +DGR ++ K PR ++ R
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPER 84
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 97 SDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 156
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 157 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 184
Score = 66 (28.3 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF ++G + V M+ + E RGF FI F
Sbjct: 118 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 151
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 53/147 (36%), Positives = 86/147 (58%)
Query: 35 SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE 94
S P K+FIGGL ++T + LK +F ++GE+ + +VM+DPVTKRSRGFGF+T+ +
Sbjct: 11 SSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVD 70
Query: 95 SKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQM-DYFG 143
VD+ ++ HE+D + ++ K A PR + + VT+ V +E + YF
Sbjct: 71 QAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFD 130
Query: 144 QYGTIESVNMVTNKETGAKRGFAFIEF 170
Q+G ++ ++ +K T RGF F+ F
Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Score = 185 (70.2 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 32/81 (39%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +F+Q+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 272 (100.8 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 54/134 (40%), Positives = 86/134 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL++ T D SLK +F Q+GE+ + VM+D T RSRGFGF+T+ + K V+ M
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMV- 169
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKV------QIALEQ--MDYFGQYGTIESVNMVTN 156
+ H +DG++++ KRA+PR+ + + +K+ Q A EQ +F Q+G + ++ +
Sbjct: 170 KEHYLDGKIIDPKRAIPRDEQ-EKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMID 228
Query: 157 KETGAKRGFAFIEF 170
K+TG RGF F+ F
Sbjct: 229 KDTGRPRGFGFVTF 242
Score = 182 (69.1 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E K+F+GG+ + K FF Q+G ++D +M D T R RGFGF+T+ V
Sbjct: 189 EQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAV 248
Query: 99 DEAMSNRPHEIDGRVVETKRAVPR 122
+ A+S RP EI G+ +E K+A PR
Sbjct: 249 EAALS-RPLEILGKTIEVKKAQPR 271
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 51/142 (35%), Positives = 85/142 (59%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQM-DYFGQYGTI 148
+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+G +
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
+ ++ +K T RGF F+ F
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTF 157
Score = 188 (71.2 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDN 120
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 121 KTNKRRGFCFITF 133
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 82 EPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 141
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 142 IMEKKYHNVGLSKCEIKVAMSKE 164
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 54/144 (37%), Positives = 89/144 (61%)
Query: 34 DSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYS 93
D+ +E E K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ +
Sbjct: 36 DASKNE-EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 94
Query: 94 ESKMVDEAMSNRPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYG 146
ES+ VD+ M + H+++G+V++ KRA + K V+++ E++ +YFG +G
Sbjct: 95 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 154
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
+ES+ + + +T +RGF FI F
Sbjct: 155 EVESIELPMDNKTNKRRGFCFITF 178
Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 127 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 186
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 187 IMEKKYHNVGLSKCEIKVAMSKE 209
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 50/137 (36%), Positives = 84/137 (61%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD+ ++
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQM-DYFGQYGTIESVNM 153
HE+D + ++ K A PR + + VT+ V +E + YF Q+G ++ +
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 120
Query: 154 VTNKETGAKRGFAFIEF 170
+ +K T RGF F+ F
Sbjct: 121 MFDKTTNRHRGFGFVTF 137
Score = 188 (71.2 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 149 IHFHEINNKMVECKKAQPKEV 169
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/142 (35%), Positives = 85/142 (59%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQMD-YFGQYGTI 148
+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+G +
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
+ ++ +K T RGF F+ F
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTF 157
Score = 187 (70.9 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/142 (35%), Positives = 85/142 (59%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQMD-YFGQYGTI 148
+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+G +
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
+ ++ +K T RGF F+ F
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTF 157
Score = 187 (70.9 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/142 (35%), Positives = 85/142 (59%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQMD-YFGQYGTI 148
+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+G +
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
+ ++ +K T RGF F+ F
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTF 157
Score = 187 (70.9 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 50/136 (36%), Positives = 83/136 (61%)
Query: 46 LFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNR 105
+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD+ +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 106 PHEIDGRVVETKRAVPREVKVRRVTKVQ-----------IALEQMDYFGQYGTIESVNMV 154
HE+D + ++ K A PR + + VT+ + + + YF Q+G +E ++
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLM 120
Query: 155 TNKETGAKRGFAFIEF 170
+K T RGF F+ F
Sbjct: 121 FDKTTNRHRGFGFVTF 136
Score = 185 (70.2 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 148 IHFHEINNKMVECKKAQPKEV 168
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 218 KTNKRRGFCFITF 230
Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 218 KTNKRRGFCFITF 230
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 218 KTNKRRGFCFITF 230
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 91 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 150
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 151 KTNKRRGFCFITF 163
Score = 131 (51.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 112 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 171
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 172 IMEKKYHNVGLSKCEIKVAMSKE 194
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 121
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 122 KTNKRRGFCFITF 134
Score = 131 (51.2 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 83 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 142
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 143 IMEKKYHNVGLSKCEIKVAMSKE 165
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 218 KTNKRRGFCFITF 230
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 218 KTNKRRGFCFITF 230
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 214 (80.4 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 37/92 (40%), Positives = 60/92 (65%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ + KLF+GGLD+ T ++L+ +F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 8 DEIGKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRT 67
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRV-TK 131
+ +PH +DGR ++ K PR ++ + TK
Sbjct: 68 VLDTKPHNLDGRNIDPKPCTPRGMQPEKTRTK 99
Score = 178 (67.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 32/88 (36%), Positives = 57/88 (64%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ +K+F+GG+ + + L+ +F ++G + +VV++ D +R RGFGFIT+ +
Sbjct: 107 SDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQS 166
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE K+A PR+ K
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKKAEPRDSK 194
Score = 72 (30.4 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E DYF ++G + V M+ + E RGF FI F
Sbjct: 128 ELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITF 161
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 53/144 (36%), Positives = 89/144 (61%)
Query: 34 DSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYS 93
D+ +E E K+FIGGL + T LK +F ++G++VD + DP+T RSRGFGF+ +
Sbjct: 67 DASKNE-EDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK 125
Query: 94 ESKMVDEAMSNRPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYG 146
ES+ VD+ M + H+++G+V++ KRA + K V+++ E++ +YFG +G
Sbjct: 126 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 185
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
+ES+ + + +T +RGF FI F
Sbjct: 186 EVESIELPMDNKTNKRRGFCFITF 209
Score = 131 (51.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 158 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 217
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 218 IMEKKYHNVGLSKCEIKVAMSKE 240
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 62/139 (44%), Positives = 81/139 (58%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLFIGGL + D+ L++ FEQWG + + VVM+DP TKRS GFGF+TY+ + VD AM+
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 105 RPHEIDGRVVETKRAVPREVKVRR-----VTKVQIAL-----EQ---MDYFGQYGTIESV 151
RPH++D RV+E KRAV RE R V K+ + + E+ DYF QYG I+
Sbjct: 61 RPHKVDERVLEPKRAVSREDSERTGTHLTVKKIFVGVVKEDTEEHHLRDYFEQYGKIQ-- 118
Query: 152 NMVTNKETGAKRGFAFIEF 170
K GF F F
Sbjct: 119 ------RQWKKEGFCFFTF 131
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 267 (99.0 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 53/156 (33%), Positives = 93/156 (59%)
Query: 23 PLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82
P + E S+ + K+FIGGL++ T +D+L+ +F ++G + D+ +MKDP T
Sbjct: 138 PQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG 197
Query: 83 RSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIA------- 135
RSRGFGF+++ + VDE + + H +DG+V++ KRA+PR+ + + K+ +
Sbjct: 198 RSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDPKRAIPRDEQ-DKTGKIFVGGIGPDVR 255
Query: 136 -LEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E ++F Q+GTI ++ +K+TG RGF F+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291
Score = 172 (65.6 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E + K+F+GG+ + FF QWG I+D +M D T +SRGFGF+TY + V
Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVK 125
D N+ + R +E KRA PR ++
Sbjct: 298 DRVCQNKFIDFKDRKIEIKRAEPRHMQ 324
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 52/145 (35%), Positives = 88/145 (60%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
++ S+C E K+F+GGL + T+ LK +F ++GE++D + D T RSRGFGFI
Sbjct: 35 IDASKCEEDAG--KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFIL 92
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVP-REVKVRRV----TKVQIALEQM-DYFGQY 145
+ ES VD + + H +DGR ++ KRA+ ++ V+++ + E++ +YFG +
Sbjct: 93 FKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSF 152
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE++ + T+ +T +RGF FI F
Sbjct: 153 GEIETIELPTDPKTSKRRGFVFITF 177
Score = 157 (60.3 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL+ T ++ ++ +F +GEI + + DP T + RGF FIT+ E V +
Sbjct: 126 EPVKKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKK 185
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+E+
Sbjct: 186 ILEKKYHNVCGSKCEIKIAQPKEI 209
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 50/133 (37%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++G++VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 215
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 216 KTNKRRGFCFITF 228
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 237 IMEKKYHNVGLSKCEIKVAMSKE 259
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 50/133 (37%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++G++VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 215
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 216 KTNKRRGFCFITF 228
Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 237 IMEKKYHNVGLSKCEIKVAMSKE 259
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 50/133 (37%), Positives = 84/133 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++G++VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 215
Query: 158 ETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 216 KTNKRRGFCFITF 228
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 237 IMEKKYHNVGLSKCEIKVAMSKE 259
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 58/145 (40%), Positives = 85/145 (58%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E L KLFIGGL+ +T + L+ F +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 23 ENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEA 82
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIAL-EQMDYFGQY 145
D AM+ PH +DG VE KRAV RE KV+++ K + + + +F Q+
Sbjct: 83 DAAMAASPHAVDGNSVELKRAVSREDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQF 142
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G +E ++ +K++G KRGF F+ F
Sbjct: 143 GPVEKAEIIADKQSGKKRGFGFVYF 167
Score = 144 (55.7 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 93 VDGNSVELKRAVSR--EDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEI 150
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E
Sbjct: 151 IADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 198
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 50/132 (37%), Positives = 83/132 (62%)
Query: 46 LFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNR 105
+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 106 PHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNKE 158
H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + + +
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNK 120
Query: 159 TGAKRGFAFIEF 170
T +RGF FI F
Sbjct: 121 TNKRRGFCFITF 132
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V +
Sbjct: 81 EPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 140
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H + E K A+ +E
Sbjct: 141 IMEKKYHNVGLSKCEIKVAMSKE 163
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 264 (98.0 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 52/135 (38%), Positives = 87/135 (64%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
RK FIGGL + T +++L + F+++G IVD +MKD T RSRGFGF+T+ ++K VD +
Sbjct: 162 RKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLK 221
Query: 104 NRPHEIDGRVVETKRAVPREVKVRRVTKV-------QIALEQMD-YFGQYGTIESVNMVT 155
+R H +DG++++ KRA+ +E + +V K+ + E+ D +F Q+G I ++
Sbjct: 222 DR-HVLDGKLIDPKRAISKEDQ-EKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMI 279
Query: 156 NKETGAKRGFAFIEF 170
+K+TG RGF F+ +
Sbjct: 280 DKDTGRSRGFGFVTY 294
Score = 181 (68.8 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
+ E + K+F+GG+D ++ FF Q+G+I+D +M D T RSRGFGF+TY V
Sbjct: 241 DQEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAV 300
Query: 99 DEAMSNRPHEIDGRVVETKRAVPR 122
D+ N+ + G+ +E KRA PR
Sbjct: 301 DKVCVNKYLTLKGKAMEVKRAAPR 324
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 50/142 (35%), Positives = 84/142 (59%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 100 EAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQM-DYFGQYGTI 148
+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+ +
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKV 135
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
+ ++ +K T RGF F+ F
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTF 157
Score = 180 (68.4 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+ ++ D ++M D T R RGFGF+T+ +V++
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 264 (98.0 bits), Expect = 6.5e-22, P = 6.5e-22
Identities = 53/136 (38%), Positives = 82/136 (60%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLF+GGL ++T+ D LK +F +G + DV++MKDPVT+RSRGFGFIT+ E V++ +
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 105 RPHEIDGRVVETKRAVP--REVKVRRVTKVQI--------ALEQMDYFGQYGTIESVNMV 154
H +DG+ ++ K A P R + + K+ + A E YF Q+G +E M+
Sbjct: 264 PIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVML 323
Query: 155 TNKETGAKRGFAFIEF 170
+++T RGF F+ F
Sbjct: 324 MDQQTKRHRGFGFVTF 339
Score = 173 (66.0 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GG+ T+ + +KA+F Q+G + + V++ D TKR RGFGF+T+ +VD
Sbjct: 291 KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE 350
Query: 104 NRPHEIDGRVVETKRAVPRE 123
H I + VE K+A P+E
Sbjct: 351 IHFHTIKNKKVECKKAQPKE 370
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 52/138 (37%), Positives = 84/138 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + +S V++
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFGQ+G IE++
Sbjct: 132 VLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189
Query: 153 MVTNKETGAKRGFAFIEF 170
+ + + +RGF FI F
Sbjct: 190 LPIDPKLNKRRGFVFITF 207
Score = 149 (57.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F Q+GEI + + DP + RGF FIT+ E V +
Sbjct: 156 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 216 VLEKKFHTVSGSKCEIKVAQPKEV 239
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 52/138 (37%), Positives = 84/138 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + +S V++
Sbjct: 85 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 144
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFGQ+G IE++
Sbjct: 145 VLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 202
Query: 153 MVTNKETGAKRGFAFIEF 170
+ + + +RGF FI F
Sbjct: 203 LPIDPKLNKRRGFVFITF 220
Score = 149 (57.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F Q+GEI + + DP + RGF FIT+ E V +
Sbjct: 169 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 228
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 229 VLEKKFHTVSGSKCEIKVAQPKEV 252
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 52/138 (37%), Positives = 84/138 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + +S V++
Sbjct: 71 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 130
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFGQ+G IE++
Sbjct: 131 VLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 188
Query: 153 MVTNKETGAKRGFAFIEF 170
+ + + +RGF FI F
Sbjct: 189 LPIDPKLNKRRGFVFITF 206
Score = 149 (57.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F Q+GEI + + DP + RGF FIT+ E V +
Sbjct: 155 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 214
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 215 VLEKKFHTVSGSKCEIKVAQPKEV 238
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 52/138 (37%), Positives = 84/138 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + +S V++
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFGQ+G IE++
Sbjct: 132 VLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189
Query: 153 MVTNKETGAKRGFAFIEF 170
+ + + +RGF FI F
Sbjct: 190 LPIDPKLNKRRGFVFITF 207
Score = 149 (57.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F Q+GEI + + DP + RGF FIT+ E V +
Sbjct: 156 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 216 VLEKKFHTVSGSKCEIKVAQPKEV 239
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 52/138 (37%), Positives = 84/138 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + +S V++
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFGQ+G IE++
Sbjct: 132 VLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189
Query: 153 MVTNKETGAKRGFAFIEF 170
+ + + +RGF FI F
Sbjct: 190 LPIDPKLNKRRGFVFITF 207
Score = 149 (57.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F Q+GEI + + DP + RGF FIT+ E V +
Sbjct: 156 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 216 VLEKKFHTVSGSKCEIKVAQPKEV 239
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 63/143 (44%), Positives = 86/143 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ LRKLFIGGL + T DDSL+ FE+WG + D KRSRGFGF+TYS + VD
Sbjct: 29 KELRKLFIGGLSFETTDDSLREHFEKWGTLTDCG------NKRSRGFGFLTYSCVEEVDA 82
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQMD---YFGQYGT 147
A+ RPH+ RVV KRAV RE V+ V K+ + E+ + YF +YG
Sbjct: 83 AVCARPHKAAVRVVG-KRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGK 141
Query: 148 IESVNMVTNKETGAKRGFAFIEF 170
IE++ ++ +++G KRGFAF+ F
Sbjct: 142 IETIEVMEGRQSGKKRGFAFVTF 164
Score = 130 (50.8 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/83 (27%), Positives = 51/83 (61%)
Query: 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM 102
++KL++GG+ T + +L+ +F+++G+I + VM+ + + RGF F+T+ + VD+ +
Sbjct: 115 VKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKIL 174
Query: 103 SNRPHEIDGRVVETKRAVPREVK 125
H I+G E + + +E++
Sbjct: 175 QKH-HAINGNNCEVGKVLSKEMQ 196
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 56/162 (34%), Positives = 93/162 (57%)
Query: 19 GTVVPLAMIINKAMED--SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVM 76
G+ P A N A D + E K+F+GGL + T+ LK +F ++GE+VD +
Sbjct: 43 GSAAPQAGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK 102
Query: 77 KDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI-- 134
DP T RSRGFGFI + ++ V++ + + H +DGRV++ K+A+ +K V K+ +
Sbjct: 103 MDPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGG 160
Query: 135 ----ALEQM--DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
A E+ +YFG++G IE++ + + ++ +RGF FI F
Sbjct: 161 LNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITF 202
Score = 153 (58.9 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 28/84 (33%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F ++GEI + + DP + + RGF FIT+ E + V +
Sbjct: 151 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKK 210
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H I G E K A P+EV
Sbjct: 211 VLEKKFHTISGSKCEIKVAQPKEV 234
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 63/141 (44%), Positives = 85/141 (60%)
Query: 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM 102
LRKLFIGGL + T DDSL+ FE+WG + D KRSRGFGF+TYS + VD A+
Sbjct: 1 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCG------NKRSRGFGFLTYSCVEEVDAAV 54
Query: 103 SNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA-----LEQMD---YFGQYGTIE 149
RPH+ RVV KRAV RE V+ V K+ + E+ + YF +YG IE
Sbjct: 55 CARPHKAAVRVVG-KRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIE 113
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
++ ++ +++G KRGFAF+ F
Sbjct: 114 TIEVMEGRQSGKKRGFAFVTF 134
Score = 130 (50.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 23/83 (27%), Positives = 51/83 (61%)
Query: 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM 102
++KL++GG+ T + +L+ +F+++G+I + VM+ + + RGF F+T+ + VD+ +
Sbjct: 85 VKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKIL 144
Query: 103 SNRPHEIDGRVVETKRAVPREVK 125
H I+G E + + +E++
Sbjct: 145 QKH-HAINGNNCEVGKVLSKEMQ 166
>UNIPROTKB|F1LXW0 [details] [associations]
symbol:F1LXW0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00212167 Ensembl:ENSRNOT00000008039
Uniprot:F1LXW0
Length = 293
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 60/137 (43%), Positives = 78/137 (56%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KLF G L + T D+SL++ FEQW VM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLWKLFTGALSFETTDESLRSHFEQW--TTHCGVMRDPNTKRSRGFGFVTYATVEEV 66
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR----VTKVQIALEQMDYFGQY-GTIESVNM 153
D M+ RPH++DGRVVE KRAV RE R K+ + + D + N
Sbjct: 67 DAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLAVKIFVGGIKEDTEEHHLRDYSEQNG 126
Query: 154 VTNKETGAKRGFAFIEF 170
++ KRGFA + F
Sbjct: 127 KKQRQWKKKRGFALVTF 143
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 62/145 (42%), Positives = 85/145 (58%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EP LRKLFIGGL + T D+SL++ V M DP TK SRGF F+TY+ + V
Sbjct: 9 EPGQLRKLFIGGLSFETTDESLRSHCSHSPSCV----MTDPNTKCSRGFRFVTYATVEEV 64
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRVTK--VQIALEQM---DYFGQY 145
D AM+ RPH++D RVVE KR V RE + V+++ ++ E+ DYF
Sbjct: 65 DAAMNARPHKVDRRVVEPKRGVSREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFENN 124
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T+ +G KRGFAF+ F
Sbjct: 125 GKIEVIEIMTDPSSGKKRGFAFVTF 149
Score = 139 (54.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 24/82 (29%), Positives = 50/82 (60%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F GG+ T + L+ +FE G+I + +M DP + + RGF F+T+ + VD+
Sbjct: 99 TVKKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKT 158
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H ++G E ++A+ ++
Sbjct: 159 VIQKYHTVNGHNREVRKALSKQ 180
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 50/134 (37%), Positives = 84/134 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE++D + DP+T RSRGFGF+ + +++ VD +
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 105 RPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIESVNMVTN 156
H++DG++++ KRA P++V V ++ I EQ+ +YFG YG IES+ + T+
Sbjct: 91 TEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSP-DITEEQLREYFGVYGEIESIELPTD 149
Query: 157 KETGAKRGFAFIEF 170
+T +RGF F+ F
Sbjct: 150 TKTNERRGFCFVTF 163
Score = 139 (54.0 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL ++ L+ +F +GEI + + D T RGF F+T++ + V +
Sbjct: 112 EPPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQK 171
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ NR H+I E K A P+EV
Sbjct: 172 LLENRYHQIGSGKCEIKVAQPKEV 195
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 62/145 (42%), Positives = 86/145 (59%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EP LRKLFIGGL + T D+SL++ V M DP TK SRGF F+TY+ + V
Sbjct: 8 EPGQLRKLFIGGLSFETTDESLRSHCSHSPSCV----MTDPNTKCSRGFRFVTYATVEEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRVTK--VQIALEQM---DYFGQY 145
D AM+ RPH++D RVVE KR V RE + V+++ ++ E+ DYF +
Sbjct: 64 DAAMNARPHKVDRRVVEPKRGVSREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKP 123
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G IE + ++T+ +G KRGFAF+ F
Sbjct: 124 GKIEVIEIMTDPSSGKKRGFAFVTF 148
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F GG+ T + L+ +FE+ G+I + +M DP + + RGF F+T+ + VD+
Sbjct: 98 TVKKIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKT 157
Query: 102 MSNRPHEIDGRVVETKRA 119
+ + H ++G E R+
Sbjct: 158 VIQKYHTVNGHNRERGRS 175
>UNIPROTKB|F1SP49 [details] [associations]
symbol:F1SP49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104376
EMBL:FP016004 Ensembl:ENSSSCT00000005972 OMA:SHTANGH
ArrayExpress:F1SP49 Uniprot:F1SP49
Length = 162
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 45/77 (58%), Positives = 59/77 (76%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRK+F+GGL + T D+ L++ EQWG + D VV +DP TKRSRGF F+TY+ + V
Sbjct: 16 EPEQLRKVFLGGLSFETTDERLRSHSEQWGTLTDCVVRRDPNTKRSRGFRFVTYTTVEEV 75
Query: 99 DEAMSNRPHEIDGRVVE 115
D AM+ RPH++DGRVVE
Sbjct: 76 DTAMNTRPHKVDGRVVE 92
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 55/142 (38%), Positives = 85/142 (59%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
SL + IG + +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS + D A
Sbjct: 5 SLCGVLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
Query: 102 MSNRPHEIDGRVVETKRAVPRE--------VKVRRV----TKVQIAL-EQMDYFGQYGTI 148
M+ PH +DG VE KRAV RE KV+++ K +A + +++F Q+G +
Sbjct: 65 MAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAV 124
Query: 149 ESVNMVTNKETGAKRGFAFIEF 170
E ++ +K++G KRGF F+ F
Sbjct: 125 EKAEIIADKQSGKKRGFGFVYF 146
Score = 145 (56.1 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 37/113 (32%), Positives = 57/113 (50%)
Query: 17 VAGTVVPLAMIINKAMEDS-QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV 75
V G V L +++ EDS + ++KLF+GGL + L F Q+G + +
Sbjct: 72 VDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEI 129
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRR 128
+ D + + RGFGF+ + D+A + H I G VE K+AVP+E V R
Sbjct: 130 IADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIVAR 182
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S P S K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++
Sbjct: 45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104
Query: 98 VDEAMSNRPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIE 149
VD+ + + H++DG++++ KRA P++V V ++ + EQ+ +YFG +G IE
Sbjct: 105 VDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP-DTSEEQIKEYFGAFGEIE 163
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
++ + + +T +RGF FI +
Sbjct: 164 NIELPMDTKTNERRGFCFITY 184
Score = 152 (58.6 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 133 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 193 LLESRYHQIGSGKCEIKVAQPKEV 216
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S P S K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++
Sbjct: 45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104
Query: 98 VDEAMSNRPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIE 149
VD+ + + H++DG++++ KRA P++V V ++ + EQ+ +YFG +G IE
Sbjct: 105 VDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP-DTSEEQIKEYFGAFGEIE 163
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
++ + + +T +RGF FI +
Sbjct: 164 NIELPMDTKTNERRGFCFITY 184
Score = 152 (58.6 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 133 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 193 LLESRYHQIGSGKCEIKVAQPKEV 216
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 206 (77.6 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 36/91 (39%), Positives = 63/91 (69%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
E+ + L KLFIGG+ + T+++ L+ +F ++G++V+ V+M+D T R+RGFGFI +
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
++ + + + ++ H IDGR VE K+AVPR+
Sbjct: 64 ADPSVAERVIMDK-HIIDGRTVEAKKAVPRD 93
Score = 202 (76.2 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL + K +F+Q+G I DVVVM D T+R RGFGFIT+ + VD +
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HE++G++VE KRAVP+E+
Sbjct: 182 KTFHELNGKMVEVKRAVPKEL 202
Score = 70 (29.7 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF Q+GTI V ++ + T RGF FI F
Sbjct: 137 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 170
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 50/138 (36%), Positives = 84/138 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + ++ V++
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFG++G IE++
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIE 184
Query: 153 MVTNKETGAKRGFAFIEF 170
+ + + +RGF FI F
Sbjct: 185 LPMDPKLNKRRGFVFITF 202
Score = 150 (57.9 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 27/84 (32%), Positives = 50/84 (59%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F ++GEI + + DP + RGF FIT+ E + V +
Sbjct: 151 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 211 VLEKKFHTVSGSKCEIKVAQPKEV 234
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 50/138 (36%), Positives = 84/138 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + ++ V++
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFG++G IE++
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIE 184
Query: 153 MVTNKETGAKRGFAFIEF 170
+ + + +RGF FI F
Sbjct: 185 LPMDPKLNKRRGFVFITF 202
Score = 150 (57.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 27/84 (32%), Positives = 50/84 (59%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F ++GEI + + DP + RGF FIT+ E + V +
Sbjct: 151 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 211 VLEKKFHTVSGSKCEIKVAQPKEV 234
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 50/138 (36%), Positives = 84/138 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + ++ V++
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVN 152
+ + H +DGRV++ K+A+ +K V K+ + A E+ +YFG++G IE++
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIE 184
Query: 153 MVTNKETGAKRGFAFIEF 170
+ + + +RGF FI F
Sbjct: 185 LPMDPKLNKRRGFVFITF 202
Score = 150 (57.9 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 27/84 (32%), Positives = 50/84 (59%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F ++GEI + + DP + RGF FIT+ E + V +
Sbjct: 151 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 211 VLEKKFHTVSGSKCEIKVAQPKEV 234
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 49/134 (36%), Positives = 84/134 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + ++ V++ +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVNMVTN 156
+ H +DGRV++ K+A+ +K V K+ + A E+ +YFG++G IE++ + +
Sbjct: 61 KEHRLDGRVIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMD 118
Query: 157 KETGAKRGFAFIEF 170
++ +RGF FI F
Sbjct: 119 PKSNKRRGFVFITF 132
Score = 131 (51.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/71 (30%), Positives = 44/71 (61%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F ++GEI + + DP + + RGF FIT+ E + V +
Sbjct: 81 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKK 140
Query: 101 AMSNRPHEIDG 111
+ + H I G
Sbjct: 141 VLEKKFHTISG 151
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 49/136 (36%), Positives = 80/136 (58%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S + + KLF+GGLD+ T ++L+++F Q+GE+VD V+MKD T +SRGFGF+ + +
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 98 VDEAMSNRPHEIDGRVVETKRA---VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMV 154
V +++RPH +DGR + R+ ++ V + E +YF ++G + V M+
Sbjct: 64 VGTVLASRPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 123
Query: 155 TNKETGAKRGFAFIEF 170
+ E RGF FI F
Sbjct: 124 YDAEKQRPRGFGFITF 139
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 85 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 144
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 145 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 172
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 57/150 (38%), Positives = 89/150 (59%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
++ EP+ L +LFI GL++ T ++SL+ F+QWG ++D VVM DP T+ SR FGF+
Sbjct: 2 LKSESLKEPKQLWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVM 61
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-------RVTKVQIALEQMD---- 140
Y+ + VD A++ RPH+++ R+ + K AV RE R + T V E +
Sbjct: 62 YATVEKVDAAVNVRPHKVN-RIGKPKMAVSREDSQRPGAHLTGKKTFVGGIKEDTEEHHL 120
Query: 141 --YFGQYGTIESVNMVTNKETGAKRGFAFI 168
YF QYG I + ++T++ + KRGFAF+
Sbjct: 121 RHYFEQYGEIRMIEIMTDQGSDKKRGFAFV 150
Score = 146 (56.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 33 EDSQCSEPESL-RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
EDSQ +K F+GG+ T + L+ +FEQ+GEI + +M D + + RGF F+T
Sbjct: 92 EDSQRPGAHLTGKKTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVT 151
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ +D+ + + H ++G E +RA+ ++
Sbjct: 152 CDDHDSIDKIVIQKQHTVNGHNYEVRRALSKQ 183
>UNIPROTKB|F1P8M3 [details] [associations]
symbol:F1P8M3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015267
Ensembl:ENSCAFT00000039191 Uniprot:F1P8M3
Length = 210
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 46/85 (54%), Positives = 61/85 (71%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E L FI GL ++T ++L++ FEQWG ++D V M+DP TK SRGFGF+ Y+ + V
Sbjct: 9 ELEQLWNFFISGLSFKTTYETLRSHFEQWGMLIDCVAMRDPNTKLSRGFGFVMYATMEEV 68
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE 123
D AM RPH++DGRVVE KRAV +E
Sbjct: 69 DAAMKARPHKVDGRVVERKRAVSQE 93
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 55/162 (33%), Positives = 92/162 (56%)
Query: 19 GTVVPLAMIINKAMED--SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVM 76
G+ P A N A D + E K+F+GGL + T+ LK +F ++GE+VD +
Sbjct: 37 GSAAPPAGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK 96
Query: 77 KDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI-- 134
P T RS+GFGFI + ++ V++ + + H +DGRV++ K+A+ +K V K+ +
Sbjct: 97 MVPNTGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMA--MKKDPVKKIFVGG 154
Query: 135 ----ALEQM--DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
A E+ +YFG++G IE++ + + +T +RGF FI F
Sbjct: 155 LNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITF 196
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F ++GEI + + DP T + RGF FIT+ E + V +
Sbjct: 145 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKK 204
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H I G E K A P+EV
Sbjct: 205 VLEKKFHTISGSKCEIKVAQPKEV 228
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 49/134 (36%), Positives = 82/134 (61%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GGL + T+ LK +F ++GE+ D + DP T RSRGFGFI + E V++ +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVNMVTN 156
+ H +DGR+++ K+A+ +K V K+ + A E+ +YFG++G IE++ + +
Sbjct: 61 KEHRLDGRLIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMD 118
Query: 157 KETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 119 PKTNKRRGFVFITF 132
Score = 155 (59.6 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F ++GEI + + DP T + RGF FIT+ E V +
Sbjct: 81 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKK 140
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 141 VLEKKFHNVSGSKCEIKVAQPKEV 164
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 49/134 (36%), Positives = 82/134 (61%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GGL + T+ LK +F ++GE+ D + DP T RSRGFGFI + E V++ +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQI------ALEQM--DYFGQYGTIESVNMVTN 156
+ H +DGR+++ K+A+ +K V K+ + A E+ +YFG++G IE++ + +
Sbjct: 61 KEHRLDGRLIDPKKAMA--MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMD 118
Query: 157 KETGAKRGFAFIEF 170
+T +RGF FI F
Sbjct: 119 PKTNKRRGFVFITF 132
Score = 155 (59.6 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ ++ ++ +F ++GEI + + DP T + RGF FIT+ E V +
Sbjct: 81 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKK 140
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 141 VLEKKFHNVSGSKCEIKVAQPKEV 164
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 47/137 (34%), Positives = 84/137 (61%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+VD + DP T RSRGFGFI + ++ V++
Sbjct: 66 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 125
Query: 101 AMSNRPHEIDGRVVETKRAVP-REVKVRRV----TKVQIALEQM--DYFGQYGTIESVNM 153
+ + H +DGRV++ K+A+ ++ V+++ + E+ +YFG++G IE++ +
Sbjct: 126 VLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIEL 185
Query: 154 VTNKETGAKRGFAFIEF 170
+ + +RGF FI F
Sbjct: 186 PMDPKLNKRRGFVFITF 202
Score = 142 (55.0 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 41 ESLRKLFIGGLDYRT-NDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
+ ++K+F+GGL+ + ++ ++ +F ++GEI + + DP + RGF FIT+ E + V
Sbjct: 150 DPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Query: 100 EAMSNRPHEIDGRVVETKRAVPREV 124
+ + + H + G E K A P+EV
Sbjct: 210 KVLEKKFHTVSGSKCEIKVAQPKEV 234
>UNIPROTKB|F1M5K3 [details] [associations]
symbol:F1M5K3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00567346
Ensembl:ENSRNOT00000044298 Uniprot:F1M5K3
Length = 327
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 56/138 (40%), Positives = 85/138 (61%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
E + +PE LRKLFI G + T ++SL++ FE+WG D V M+D TKR R FGF+ Y
Sbjct: 23 ERAPYEDPEELRKLFIRG-SFETTNESLRSHFEEWGTFTDCV-MRDLNTKRFRDFGFVIY 80
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMDYFGQYGTIESVN 152
+ + VD AM+ RP ++DGR+VE K A+ RE K +R + +++ G E +
Sbjct: 81 ATVEEVDAAMNARPRKVDGRLVEPKSAMSRE-KSQR-PGAHLTAKKIFVGGIKEDTEKHH 138
Query: 153 MVTNKETGAKRGFAFIEF 170
++T++ +G KR FAF+ F
Sbjct: 139 IMTDRGSGRKRDFAFVAF 156
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 51/154 (33%), Positives = 94/154 (61%)
Query: 29 NKAMEDSQC----SEP--ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTK 82
+K ED+ C S P E + K+F+GGL + T+ LK +F ++GE+ D + DP T
Sbjct: 44 SKGEEDAGCVADISSPLTEGV-KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTG 102
Query: 83 RSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVP-REVKVRRV----TKVQIALE 137
RSRGFGFI + +++ VD+ + ++ H +DGR+++ K+A+ ++ ++++ + +
Sbjct: 103 RSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGED 162
Query: 138 QM-DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
Q+ +YF +G IE++ + + +T +RGF FI F
Sbjct: 163 QIREYFETFGEIEAIELPMDPKTNKRRGFVFITF 196
Score = 163 (62.4 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ ++K+F+GGL+ +D ++ +FE +GEI + + DP T + RGF FIT+ E V +
Sbjct: 145 DPIKKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKK 204
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ + H + G E K A P+EV
Sbjct: 205 ILEKKFHNVSGSKCEIKIAQPKEV 228
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 49/144 (34%), Positives = 88/144 (61%)
Query: 34 DSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYS 93
D+ +E E K+F+GGL + T LK +F ++GE+VD + DP+T RSRGFGF+ +
Sbjct: 45 DASKNE-EDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFK 103
Query: 94 ESKMVDEAMSNRPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYG 146
E++ V++ ++ + H+++G+V++ K+A + K V+++ E++ +YF YG
Sbjct: 104 EAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAYG 163
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
+ES+ + +T +RGF FI F
Sbjct: 164 EVESIELPMENKTNKRRGFCFITF 187
Score = 135 (52.6 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL T ++ ++ +F+ +GE+ + + + T + RGF FIT+ E + V +
Sbjct: 136 EPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKK 195
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
M + H I E K A+ +E
Sbjct: 196 IMEKKYHNIGLSKCEVKVAMSKE 218
>UNIPROTKB|I3LJN1 [details] [associations]
symbol:I3LJN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:CU407216
Ensembl:ENSSSCT00000027879 Uniprot:I3LJN1
Length = 207
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 57/116 (49%), Positives = 69/116 (59%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE KLFIGGL + T D+ L++ E WG + D VM+ P TKRSRGFGF+TY+ V
Sbjct: 9 EPEL--KLFIGGLSFETTDEGLRSHSEPWGTLTDHAVMRGPNTKRSRGFGFVTYATVGEV 66
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQI--ALEQMDY--FGQYGTIES 150
D AM+ RPH++DGRVVE KR V RE R V + L Y FG Y S
Sbjct: 67 DAAMNARPHKVDGRVVEPKR-VSREDSQRPGAHVALKKTLSGRSYSDFGNYNNQSS 121
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 244 (91.0 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E K+F+GGL + T+ LK +F ++GE+ D + DP T RSRGFGFI + E VD+
Sbjct: 92 EDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDK 151
Query: 101 AMSNRPHEIDGRVVETKRAVP-REVKVRRV----TKVQIALEQM-DYFGQYGTIESVNMV 154
++ + H +DGR ++ K+A+ ++ V+++ + E++ +YFG +G IE++ +
Sbjct: 152 VLAQKEHRLDGRQIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELP 211
Query: 155 TNKETGAKRGFAFIEF 170
+ ++ +RGF FI F
Sbjct: 212 MDPKSNKRRGFVFITF 227
Score = 152 (58.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/106 (28%), Positives = 60/106 (56%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E ++K+F+GGL+ T ++ ++ +F +GEI + + DP + + RGF FIT+ E + V +
Sbjct: 176 EPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKK 235
Query: 101 AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMDYFGQYG 146
+ + H + G + + E+K+ + +V +Q Y G++G
Sbjct: 236 ILEKKYHNVSGTKDTSGKEGLCEIKIAQPKEVY---QQQQYGGRFG 278
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 48/134 (35%), Positives = 84/134 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ VD+ +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 105 RPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIESVNMVTN 156
+ H++DG++++ KRA P++V V ++ + EQ+ +YFG +G IE++ + +
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP-DTSEEQIKEYFGAFGEIENIELPMD 148
Query: 157 KETGAKRGFAFIEF 170
+T +RGF FI +
Sbjct: 149 TKTNERRGFCFITY 162
Score = 152 (58.6 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 111 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 170
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 171 LLESRYHQIGSGKCEIKVAQPKEV 194
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 54/108 (50%), Positives = 71/108 (65%)
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVT 130
M+DP TKRSRGFGF+TY+ + VD AM+ RPH++DGRVVE KRAV RE R V
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 60
Query: 131 KVQIA-----LEQ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
K+ + E+ DYF QYG IE + ++T++ +G KRGFAF+ F
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 108
Score = 119 (46.9 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ +++K+F+GG+ T + L+ +FEQ+G+I +
Sbjct: 33 KVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 90
Query: 75 VMKDPVTKRSRGFGFITYSE 94
+M D + + RGF F+T+ +
Sbjct: 91 IMTDRGSGKKRGFAFVTFDD 110
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 213 (80.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 40/85 (47%), Positives = 56/85 (65%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P RK+F+GGL + K +FEQ+G DVVVM D T+R RGFGFITY + V+
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 100 EAMSNRPHEIDGRVVETKRAVPREV 124
+ + HE++G++VE KRAVP+E+
Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPKEL 188
Score = 210 (79.0 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 35/79 (44%), Positives = 59/79 (74%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLFIGG+ + TN++ LK +F +GE+++ V++KD T R+RGFGF+ +++ + + ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 105 RPHEIDGRVVETKRAVPRE 123
+ H IDGR+VE K+AVPR+
Sbjct: 67 K-HNIDGRLVEAKKAVPRD 84
Score = 59 (25.8 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
YF Q+GT V ++ + T RGF FI +
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITY 156
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 208 (78.3 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL ++ K +F+Q+G I DVVVM D T+R RGFGFIT+ VD +
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HE++G++VE KRAVP+E+
Sbjct: 170 KTFHELNGKLVEVKRAVPKEI 190
Score = 197 (74.4 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 35/81 (43%), Positives = 59/81 (72%)
Query: 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM 102
L KLFIGG+ + T+++ L+ +F +G++V+ V+M+D T R+RGFGFI +++ + + +
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 103 SNRPHEIDGRVVETKRAVPRE 123
++ H IDGR VE K+AVPR+
Sbjct: 65 MDK-HIIDGRTVEAKKAVPRD 84
Score = 70 (29.7 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E +YF Q+GTI V ++ + T RGF FI F
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 47/134 (35%), Positives = 84/134 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ V++ +
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 105 RPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIESVNMVTN 156
+ H++DG++++ KRA P++V V ++ + EQ+ +YFG +G IE++ + +
Sbjct: 127 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP-DTSEEQIKEYFGAFGEIENIELPMD 185
Query: 157 KETGAKRGFAFIEF 170
+T +RGF FI +
Sbjct: 186 TKTNERRGFCFITY 199
Score = 152 (58.6 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 148 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 207
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 208 LLESRYHQIGSGKCEIKVAQPKEV 231
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 47/134 (35%), Positives = 84/134 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ V++ +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 105 RPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIESVNMVTN 156
+ H++DG++++ KRA P++V V ++ + EQ+ +YFG +G IE++ + +
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP-DTSEEQIKEYFGAFGEIENIELPMD 149
Query: 157 KETGAKRGFAFIEF 170
+T +RGF FI +
Sbjct: 150 TKTNERRGFCFITY 163
Score = 152 (58.6 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 112 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 172 LLESRYHQIGSGKCEIKVAQPKEV 195
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 242 (90.2 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 48/134 (35%), Positives = 84/134 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ VD+ +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 105 RPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIESVNMVTN 156
+ H++DG++++ KRA P++V V ++ + EQ+ +YFG +G IE++ + +
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP-DTSEEQIKEYFGAFGEIENIELPMD 267
Query: 157 KETGAKRGFAFIEF 170
+T +RGF FI +
Sbjct: 268 TKTNERRGFCFITY 281
Score = 152 (58.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 230 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 290 LLESRYHQIGSGKCEIKVAQPKEV 313
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 242 (90.2 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 48/134 (35%), Positives = 84/134 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ VD+ +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 105 RPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIESVNMVTN 156
+ H++DG++++ KRA P++V V ++ + EQ+ +YFG +G IE++ + +
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP-DTSEEQIKEYFGAFGEIENIELPMD 267
Query: 157 KETGAKRGFAFIEF 170
+T +RGF FI +
Sbjct: 268 TKTNERRGFCFITY 281
Score = 152 (58.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 230 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 290 LLESRYHQIGSGKCEIKVAQPKEV 313
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 242 (90.2 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 48/134 (35%), Positives = 84/134 (62%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T+ L + ++GE+VD + DPVT RSRGFGF+ + ++ VD+ +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 105 RPHEIDGRVVETKRAV-------PREVKVRRVTKVQIALEQM-DYFGQYGTIESVNMVTN 156
+ H++DG++++ KRA P++V V ++ + EQ+ +YFG +G IE++ + +
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP-DTSEEQIKEYFGAFGEIENIELPMD 267
Query: 157 KETGAKRGFAFIEF 170
+T +RGF FI +
Sbjct: 268 TKTNERRGFCFITY 281
Score = 152 (58.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T+++ +K +F +GEI ++ + D T RGF FITY++ + V +
Sbjct: 230 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ +R H+I E K A P+EV
Sbjct: 290 LLESRYHQIGSGKCEIKVAQPKEV 313
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE--------VKVR 127
M+DP +KRSRGFGF+T+S VD AM+ RPH IDGRVVE KRAV RE V V+
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 60
Query: 128 R--VTKVQIALEQ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
+ V ++ E+ DYF +YG I+++ ++T++++G KRGF F+ F
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 108
Score = 153 (58.9 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLF+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD+
Sbjct: 58 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 117
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E ++A+ R+
Sbjct: 118 VLQKYHTINGHNAEVRKALSRQ 139
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 69/169 (40%), Positives = 100/169 (59%)
Query: 15 LEVAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
LEV+ T P +++K+ E S+ PE LRKLFI GL + T D+SL + FE G+ +V
Sbjct: 1 LEVS-TPQPCPAVMSKS-ESSK--SPEELRKLFIRGLSFETIDESLSSHFEM-GKAHRLV 55
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPR--------EVKV 126
VM+ P TK SRGFGF+T + + AM+ RPH++D RVVE KR V R + V
Sbjct: 56 VMRVPNTKHSRGFGFVTKPWWRSL-AAMNARPHKVDERVVEPKRDVSRGDSQRPHAHLTV 114
Query: 127 RR--VTKVQIALEQ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
++ V +Q E+ + F QYG I+ + ++T++ + KRGFAF F
Sbjct: 115 KKIFVGGIQEGTEEHHLRNNFEQYGKID-IEIMTDRGSDKKRGFAFETF 162
Score = 137 (53.3 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 34 DSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
DSQ +++K+F+GG+ T + L+ FEQ+G+I D+ +M D + + RGF F T+
Sbjct: 104 DSQRPHAHLTVKKIFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETF 162
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ VD+ + + H ++G E + A+ ++
Sbjct: 163 DDHDSVDKIVIQKYHTVNGHNCEVREALSKQ 193
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 54/118 (45%), Positives = 73/118 (61%)
Query: 66 QWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVK 125
+WG + D VVM+DP TK SRGF F+TY+ + VD AM+ RPH++D RVVE K+AV RE
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 126 VR-----RVTKVQIA-----LEQ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
R V K+ + EQ DYF YG IE + ++T++ +G KR FAF+ F
Sbjct: 62 QRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTF 119
Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/104 (27%), Positives = 57/104 (54%)
Query: 21 VVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDP 79
VV L +++ EDSQ +++K+F+GG+ T L+ +FE +G+I + +M D
Sbjct: 49 VVELKKAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDR 106
Query: 80 VTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ R F F+T+ VD+ + + H ++G E ++A+ ++
Sbjct: 107 GSGNKRSFAFVTFDAHDSVDKIVIQKYHTVNGHNCEVRKALLKQ 150
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 45/122 (36%), Positives = 77/122 (63%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 105 RPHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIESVNMVTNK 157
+ H+++G+V++ KRA + K V+++ E++ +YFG +G +ES+ + +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217
Query: 158 ET 159
+T
Sbjct: 218 KT 219
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 39/89 (43%), Positives = 64/89 (71%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD+ +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQ 133
HE+D + ++ K A PR + + VT+ +
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTK 106
>UNIPROTKB|F1PSN2 [details] [associations]
symbol:F1PSN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03003214
Ensembl:ENSCAFT00000027618 Uniprot:F1PSN2
Length = 268
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 56/137 (40%), Positives = 79/137 (57%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EP LRK F L ++T +D ++ EQW E VD VV K SRGFG +TY+ + V
Sbjct: 8 EPAQLRKFFTEVLRFKTTNDRPRSPSEQWREFVDYVVNH----KHSRGFGSVTYATVEEV 63
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR--VTKVQIALEQ---MDYFGQYGTIESVNM 153
D AM+ RPH++D RVVE KR V E V+ V ++ E+ +Y QYG +++
Sbjct: 64 DAAMNARPHKVDARVVEPKRDVS-EATVQNIFVGDIKEDTEEYHLQNYLEQYGKTKAIES 122
Query: 154 VTNKETGAKRGFAFIEF 170
+ + +G KRGFAF+ F
Sbjct: 123 MNDLGSGKKRGFAFMTF 139
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 226 (84.6 bits), Expect = 9.2e-19, P = 9.2e-19
Identities = 50/130 (38%), Positives = 78/130 (60%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
RKLF+GGL + T + L+ F ++GEI + V DP T RSRGF FI ++ ++ +D+ +
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 104 NRPHEIDGRVVETKRAVPREVK--VRRVTKVQIALEQMD-YFGQYGTIESVNMVTNKETG 160
H I+ + V+ K+A R K V +T +I+ E++ YFGQ+G I V M +K+
Sbjct: 116 ADEHIINSKKVDPKKAKARHGKIFVGGLT-TEISDEEIKTYFGQFGNIVEVEMPFDKQKS 174
Query: 161 AKRGFAFIEF 170
++GF FI F
Sbjct: 175 QRKGFCFITF 184
Score = 147 (56.8 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 27 IINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRG 86
IIN D + ++ K+F+GGL +D+ +K +F Q+G IV+V + D + +G
Sbjct: 120 IINSKKVDPKKAKARH-GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKG 178
Query: 87 FGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPR 122
F FIT+ ++V + + +I G+ V+ KRA P+
Sbjct: 179 FCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 61/144 (42%), Positives = 86/144 (59%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
PE LRKLFI GL + T D+SL + FE G+ +VVM+ P TK SRGFGF+T + +
Sbjct: 6 PEELRKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVTKPWWRSL- 63
Query: 100 EAMSNRPHEIDGRVVETKRAVPR--------EVKVRR--VTKVQIALEQ---MDYFGQYG 146
AM+ RPH++D RVVE KR V R + V++ V +Q E+ + F QYG
Sbjct: 64 AAMNARPHKVDERVVEPKRDVSRGDSQRPHAHLTVKKIFVGGIQEGTEEHHLRNNFEQYG 123
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
I+ + ++T++ + KRGFAF F
Sbjct: 124 KID-IEIMTDRGSDKKRGFAFETF 146
Score = 137 (53.3 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 34 DSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
DSQ +++K+F+GG+ T + L+ FEQ+G+I D+ +M D + + RGF F T+
Sbjct: 88 DSQRPHAHLTVKKIFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETF 146
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ VD+ + + H ++G E + A+ ++
Sbjct: 147 DDHDSVDKIVIQKYHTVNGHNCEVREALSKQ 177
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 43/124 (34%), Positives = 74/124 (59%)
Query: 58 DSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117
+ L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD+ ++ HE+D + ++ K
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 118 RAVPREVKVRRVTK----------VQIALEQMD-YFGQYGTIESVNMVTNKETGAKRGFA 166
A PR + + VT+ V +E + YF Q+G ++ ++ +K T RGF
Sbjct: 61 VAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG 120
Query: 167 FIEF 170
F+ F
Sbjct: 121 FVTF 124
Score = 187 (70.9 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 136 IHFHEINNKMVECKKAQPKEV 156
>UNIPROTKB|F1PJ22 [details] [associations]
symbol:F1PJ22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03017137
Ensembl:ENSCAFT00000029502 Uniprot:F1PJ22
Length = 204
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 47/85 (55%), Positives = 59/85 (69%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L KLFI GL + T ++SL+ EQWG + V ++DP TK SRGF +TY+ + V
Sbjct: 9 EPEQLHKLFIRGLGFETTNESLRRLCEQWGMLG--VAIRDPNTKCSRGF--VTYAPVEEV 64
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE 123
D AM RPH++DGRVVE KRAV RE
Sbjct: 65 DAAMDARPHKVDGRVVEPKRAVSRE 89
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 225 (84.3 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 48/143 (33%), Positives = 83/143 (58%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E + KLF+GGL + T ++L +F ++G+I+D VVMK+ + RSRGFGF+T+++ V
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREV-KVRRVTKVQIAL-------EQMD---YFGQYGT 147
+ + N PH +DGR ++ K PR + K ++ ++ L + D +F +YG
Sbjct: 62 NHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 148 IESVNMVTNKETGAKRGFAFIEF 170
+ V ++ ++E RGF F+ F
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSF 144
Score = 172 (65.6 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GGL + L+ FF ++G++ +VV+M D K+SRGFGF+++ E V+ +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 105 RPHEIDGRVVETKRAVPRE 123
R ++G+ VE K+A PR+
Sbjct: 157 RYINLNGKQVEIKKAEPRD 175
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 188 (71.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 33/79 (41%), Positives = 55/79 (69%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLFIGG+ + T+++ L+ +F +GE++ V VM++ T R RGFGF+ +S+ ++D + +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 105 RPHEIDGRVVETKRAVPRE 123
+ H ID R V+ KRA+ RE
Sbjct: 67 K-HHIDNRDVDVKRAMSRE 84
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL D +A+FE +G + D V+M D T+R RGFGF+++ VD +
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 104 NRPHEIDGRVVETKRAVPRE 123
H+++G+ VE KRA+P++
Sbjct: 170 KTFHDLNGKQVEVKRALPKD 189
Score = 57 (25.1 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
YF YG + ++ ++ T RGF F+ F
Sbjct: 129 YFETYGPVSDAVIMIDQTTQRPRGFGFVSF 158
>UNIPROTKB|F1N7Z3 [details] [associations]
symbol:F1N7Z3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00696055 EMBL:DAAA02008074
Ensembl:ENSBTAT00000056782 Uniprot:F1N7Z3
Length = 268
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 59/145 (40%), Positives = 78/145 (53%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE L+KLFI GL + T + L++ FEQWG + D VV +DP KR G G E K
Sbjct: 2 EPEQLQKLFIRGLSFETTHEGLRSRFEQWGTLTDCVVRRDPNAKRHGGGG-----ERKAT 56
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRR-----VTKVQIA-----LEQ---MDYFGQY 145
++DGRVV+ KRAV RE R V KV + E+ DYF QY
Sbjct: 57 ---------QVDGRVVKPKRAVSREDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQY 107
Query: 146 GTIESVNMVTNKETGAKRGFAFIEF 170
G E + ++T++ +G KRGF F+ F
Sbjct: 108 GKTEVIEIITDQGSGKKRGFVFVTF 132
Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/109 (27%), Positives = 61/109 (55%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ ++K+F+GG+ T + L+ +FEQ+G+ +
Sbjct: 57 QVDGRVVKPKRAVSR--EDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYGKTEVIE 114
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
++ D + + RGF F+T+ + VD+ + + H +G E ++A+ ++
Sbjct: 115 IITDQGSGKKRGFVFVTFDDHDSVDKIVIQKYHTGNGLNCEVRKALSKQ 163
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 43/112 (38%), Positives = 71/112 (63%)
Query: 46 LFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNR 105
+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 106 PHEIDGRVVETKRAVPREVK--VRRV----TKVQIALEQM-DYFGQYGTIES 150
H+++G+V++ KRA + K V+++ E++ +YFG +G +ES
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 112
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 216 (81.1 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 43/124 (34%), Positives = 73/124 (58%)
Query: 58 DSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117
+ L+ +F Q+GE + +VM+DP+TKRSRGFGF+T+ + VD+ ++ HE+D + ++ K
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 118 RAVPREVKVRRVTK----------VQIALEQM-DYFGQYGTIESVNMVTNKETGAKRGFA 166
A PR + + VT+ V +E + YF Q+G ++ ++ +K T RGF
Sbjct: 61 VAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFG 120
Query: 167 FIEF 170
F+ F
Sbjct: 121 FVTF 124
Score = 188 (71.2 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 76 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 136 IHFHEINNKMVECKKAQPKEV 156
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 146 (56.5 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 24/82 (29%), Positives = 52/82 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+T+ + VD+
Sbjct: 54 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 113
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H ++G E ++A+ ++
Sbjct: 114 VIQKYHTVNGHNCEVRKALSKQ 135
Score = 132 (51.5 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDP 79
EPE LRKLFIGGL + T D+SL++ FEQWG + D V + P
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVDSQRP 49
Score = 98 (39.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF QYG IE + ++T++ +G KRGFAF+ F
Sbjct: 74 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 104
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 41/131 (31%), Positives = 77/131 (58%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+G L + LK +F ++GE++D + DP T RSRGFGF+ ++ V++ +
Sbjct: 73 KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQ 132
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIAL-----EQMDYFGQYGTIESVNMVTNKET 159
+ H ++G V++ ++A + +K V K+ + L E+ FG++G IE++ + + ++
Sbjct: 133 KEHRLNGDVIDPEKA--KVMKNDPVKKIFVGLNPEATEKNRDFGEFGEIEAIELPMDPKS 190
Query: 160 GAKRGFAFIEF 170
+RGF FI F
Sbjct: 191 NKRRGFVFITF 201
Score = 112 (44.5 bits), Expect = 0.00036, P = 0.00036
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
E ++ + + ++K+F+G L+ + + F ++GEI + + DP + + RGF FIT+
Sbjct: 145 EKAKVMKNDPVKKIFVG-LNPEATEKNRD--FGEFGEIEAIELPMDPKSNKRRGFVFITF 201
Query: 93 SESKM-VDEAMSNRPHEIDGRVVETKRAVPRE 123
E + V + + + H I GR E K A P+E
Sbjct: 202 KEEEEPVKKVLEKKFHTISGRKCEIKVAQPKE 233
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 212 (79.7 bits), Expect = 6.1e-17, P = 6.1e-17
Identities = 50/147 (34%), Positives = 82/147 (55%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S S KLF+GG+ + T ++ +F ++GE+VD V+M D +T RGFGF+T+++S +
Sbjct: 60 SSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAV 119
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPR-----EVK-VRRVTKVQIA-----LEQ---MDYFG 143
++ + H ID R V+ KR +PR ++K V + K+ + LE+ +YF
Sbjct: 120 AEKVLEE-DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFC 178
Query: 144 QYGTIESVNMVTNKETGAKRGFAFIEF 170
YG I ++ + TG RGF F+ F
Sbjct: 179 VYGDIIEHQIMYDHHTGRSRGFGFVTF 205
Score = 171 (65.3 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 22 VPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVT 81
V L + + +D+ RK+F+GGL +D LK +F +G+I++ +M D T
Sbjct: 135 VDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHT 194
Query: 82 KRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPR 122
RSRGFGF+T+ VD S+ + HE+ + VE KRA P+
Sbjct: 195 GRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 44/131 (33%), Positives = 76/131 (58%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FI GL + T+ L +GE+VD ++ DPVT RSRGFGF+ + E+ VD+ +
Sbjct: 17 KMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLEL 71
Query: 105 RPHEIDGRVVETKRAV-----PREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKET 159
+ H++D +++ KRA P++V V ++ + +Y G +G IE++ + + +T
Sbjct: 72 KEHKLDSMLIDPKRAKALKEPPKKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKT 131
Query: 160 GAKRGFAFIEF 170
+RGF FI +
Sbjct: 132 NERRGFCFITY 142
Score = 151 (58.2 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
E +K+F+GGL T ++ +K + +GEI ++ + D T RGF FITY++ K V +
Sbjct: 91 EPPKKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKK 150
Query: 101 AMSNRPHEIDGRVVETKRAVPREV 124
+ NR H+I E K A P+E+
Sbjct: 151 LLENRYHQIGSGKCEIKVAEPKEI 174
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 37/86 (43%), Positives = 57/86 (66%)
Query: 31 AMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFI 90
++ S P K+FIGGL ++T + LK +F ++GE+ + +VM+DPVTKRSRGFGF+
Sbjct: 9 SLSSSTQDSPHDPCKMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFV 68
Query: 91 TYSESKMVDEAMSNRPHEIDGRVVET 116
TY + VD+ ++ HE+D + V T
Sbjct: 69 TYVDQTGVDKVLAQNRHELDSKTVST 94
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/86 (44%), Positives = 59/86 (68%)
Query: 34 DSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYS 93
D+ +E E K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ +
Sbjct: 69 DASKNE-EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 94 ESKMVDEAMSNRPHEIDGRVVETKRA 119
ES+ VD+ M + H+++G+V++ KRA
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRA 153
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 209 (78.6 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 49/151 (32%), Positives = 82/151 (54%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
++ Q + S K+FIGGL T + F ++GEI D V+M+D T + RGFGFIT+
Sbjct: 8 DNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITF 67
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPR--------EVKVRRVTKVQIAL-----EQM 139
++ +VD+ + + H I+G+ VE KR +P+ ++K +++ I E
Sbjct: 68 ADPSVVDKVIEDT-HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELK 126
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
D+F +YG + ++ + ET RGF F+ F
Sbjct: 127 DFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 164 (62.8 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 37/109 (33%), Positives = 64/109 (58%)
Query: 17 VAGTVVPLAMIINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVM 76
+ G V + I K +Q + ++ +K+F+GG+ +D LK FF ++G +V+ V+
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKT-KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVI 141
Query: 77 KDPVTKRSRGFGFITYSESKMVDEAMSNRPHEID--GRVVETKRAVPRE 123
+D T RSRGFGF+ + ++VDE +S + + ID VE K+A P++
Sbjct: 142 RDHETNRSRGFGFVIFDSEEVVDELLS-KGNMIDMADTQVEIKKAEPKK 189
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 208 (78.3 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T ++ K++FE++G DVVVM D VT R RGFGF+TY V+ M
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 104 NRPHEIDGRVVETKRAVPRE 123
+ HE+ + VE KRA+P+E
Sbjct: 180 SNFHELSDKRVEVKRAIPKE 199
Score = 147 (56.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLF+GG+ T++++LK +F ++G +++ VV K+ VT + RGFGF+ ++ V +A+ +
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 105 RPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMDYFGQYGTIE-SVNMVTNK 157
H I G+ V+ ++A+ + ++ +Q LE+ G E S N VT++
Sbjct: 67 T-HFILGKPVDVRKAIRKHELYQQPFSMQF-LERKVQQMNGGLREMSSNGVTSR 118
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 209 (78.6 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 48/141 (34%), Positives = 78/141 (55%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+S K+F+GGL T F ++GEI D V+MKD T + RGFGF+TY++S +VD+
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDK 98
Query: 101 AMSNRPHEIDGRVVETKRAVPR------EVKVRRVTKVQIAL-----EQMDYFGQYGTIE 149
+ + H I G+ VE KR +PR + K +++ I E ++F Q+G ++
Sbjct: 99 VIQDN-HIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELK 157
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
++ + TG RGF F+ +
Sbjct: 158 EHQIMRDHSTGRSRGFGFVTY 178
Score = 185 (70.2 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 42/114 (36%), Positives = 61/114 (53%)
Query: 35 SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE 94
S S +K+F+GG+ +DD K FF Q+GE+ + +M+D T RSRGFGF+TY
Sbjct: 121 SMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
Query: 95 SKMVDE--AMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMDYFGQYG 146
MVD A NR E+ G VE K+A P++ + + ++ G YG
Sbjct: 181 EDMVDHLLAKGNRI-ELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYG 233
>UNIPROTKB|F1PD20 [details] [associations]
symbol:F1PD20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03013453
Ensembl:ENSCAFT00000007675 Uniprot:F1PD20
Length = 309
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 56/141 (39%), Positives = 76/141 (53%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EP+ LRKLFIGGL T D+SL++ EQWG + D V M+DP KRSRGFG +
Sbjct: 9 EPQ-LRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFGV----GPGPL 63
Query: 99 DEAMSNRPHEID-GRVVETKRAVPREVKVRRVTKVQIA-----LEQ---MDYFGQYGTIE 149
+EA + P + GR T+RAV R + + E+ D QYG +E
Sbjct: 64 EEAAAQEPGPPEVGRAW-TQRAVSPGDSRRPGAHIFVGGIKGDPEEHHPRDCLEQYGNVE 122
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
+ VT++ G +RGFAF+ F
Sbjct: 123 VMETVTDRGRGEERGFAFVTF 143
>UNIPROTKB|L7N066 [details] [associations]
symbol:L7N066 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03013421
Ensembl:ENSCAFT00000006911 Uniprot:L7N066
Length = 309
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 56/141 (39%), Positives = 76/141 (53%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EP+ LRKLFIGGL T D+SL++ EQWG + D V M+DP KRSRGFG +
Sbjct: 9 EPQ-LRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFGV----GPGPL 63
Query: 99 DEAMSNRPHEID-GRVVETKRAVPREVKVRRVTKVQIA-----LEQ---MDYFGQYGTIE 149
+EA + P + GR T+RAV R + + E+ D QYG +E
Sbjct: 64 EEAAAQEPGPPEVGRAW-TQRAVSPGDSRRPGAHIFVGGIKGDPEEHHPRDCLEQYGNVE 122
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
+ VT++ G +RGFAF+ F
Sbjct: 123 VMETVTDRGRGEERGFAFVTF 143
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 203 (76.5 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 55/141 (39%), Positives = 76/141 (53%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
R I GL + T D+SLK E + VM+DP TKRSRGFGF+ Y+ + VD M+
Sbjct: 14 RVYLIRGLSFETTDESLKTM-ENTSNFL---VMRDPNTKRSRGFGFVPYTTVEEVDATMN 69
Query: 104 NRPHEIDGRVVETKRAVPREVKVRR------VTKVQIA-----LEQ---MDYFGQYGTIE 149
RPH++ GRVV KR K +R + KV + E+ DYF YG E
Sbjct: 70 ARPHKVGGRVVGPKRVSCGMEKSQRPGAPLTMKKVLVGGINEDTEEHHLRDYFEWYGKTE 129
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
+ ++T++ + KRGFAF+ F
Sbjct: 130 VIEIMTDRGSVKKRGFAFVTF 150
Score = 142 (55.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/109 (27%), Positives = 62/109 (56%)
Query: 16 EVAGTVVPLAMIINKAMEDSQC-SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV + + ME SQ P +++K+ +GG++ T + L+ +FE +G+ +
Sbjct: 74 KVGGRVVGPKRV-SCGMEKSQRPGAPLTMKKVLVGGINEDTEEHHLRDYFEWYGKTEVIE 132
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+M D + + RGF F+T+ + VD+ + + H ++G E ++A+ ++
Sbjct: 133 IMTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 181
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 209 (78.6 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 50/154 (32%), Positives = 86/154 (55%)
Query: 29 NKAMEDSQCSEPESLR-KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMK-DPVTKRSRG 86
N E S S P+S+ K+F+GGL ++++ LK +F +GE+ + +V+K +SRG
Sbjct: 90 NNDEEGSNLSLPKSISGKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRG 149
Query: 87 FGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQM------- 139
FGF+T+ + ++DE + H I+G+ VE +RA+P+E K ++ + +
Sbjct: 150 FGFVTFVDPSVIDEVILIN-HSIEGKNVEIRRAIPKEEMTEEPKKQKLFVGGLPKHITSD 208
Query: 140 ---DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
+YF ++G I N++T K G +GF FI F
Sbjct: 209 DFNNYFSEFGEISEYNLLTEKN-GTIKGFGFICF 241
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T+ DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD+ +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 105 RPHEIDGRVVET-KRAV 120
HE+D + KR V
Sbjct: 82 PHHELDSKTCRRQKRLV 98
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 46/103 (44%), Positives = 63/103 (61%)
Query: 81 TKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVTKVQIA 135
TKRSRGFGF+T + + VD M+ RPH++DGRVVE KRA+ RE R V K+ +
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRPDAHLTVKKIFVG 60
Query: 136 -----LEQ---MDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
E+ DYF QYG IE + ++ ++ + KRGFAF+ F
Sbjct: 61 SIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTF 103
Score = 142 (55.0 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 29/97 (29%), Positives = 59/97 (60%)
Query: 16 EVAGTVVPLAMIINKAMEDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVV 74
+V G VV +++ EDSQ + +++K+F+G + T + L+ +FEQ+G+I +
Sbjct: 28 KVDGRVVEPKRAMSR--EDSQRPDAHLTVKKIFVGSIKEDTEEHHLRDYFEQYGKIELIE 85
Query: 75 VMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDG 111
+M D +++ RGF F+T+ + VD+ ++ + H ++G
Sbjct: 86 IMADRGSEKKRGFAFVTFDDHDSVDKIVTQKYHTVNG 122
>UNIPROTKB|F1M108 [details] [associations]
symbol:F1M108 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00190264
Ensembl:ENSRNOT00000023750 Uniprot:F1M108
Length = 294
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 55/139 (39%), Positives = 77/139 (55%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EP L KLFI GL SL++ FEQ G + VVM+DP TKRSRGFGF+T V
Sbjct: 9 EPGQLWKLFIRGL-------SLRSHFEQRGTLPGCVVMRDPNTKRSRGFGFVT-----KV 56
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE-------VKVRRVTKVQIALEQMDYFGQYGTIESV 151
D AM +PH++DG VV KRAV + V+ + + + ++ +GT+
Sbjct: 57 DAAMKAKPHKVDGGVVGPKRAVSEHSQRAGAHLTVKESSAGGVKEDTGEHHRLFGTVWE- 115
Query: 152 NMVTNKETGAKRGFAFIEF 170
N++T + +G KR AF+ F
Sbjct: 116 NIMTVRGSGKKRDVAFVTF 134
>UNIPROTKB|F1P645 [details] [associations]
symbol:LOC607505 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03007023 Ensembl:ENSCAFT00000000618 OMA:EMARASP
Uniprot:F1P645
Length = 317
Score = 193 (73.0 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 54/150 (36%), Positives = 78/150 (52%)
Query: 35 SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE 94
S+ E LRKLFIGGL + T D+SL++ FE+WG + D VV ++P +RSRGFG +
Sbjct: 4 SESPEEPQLRKLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVVP--- 60
Query: 95 SKMVDEAMSNRPHEIDGRVVETK-RAVPREVKVR-----RVTKVQIA-----LEQ---MD 140
+ + A + P K RA RE R V K+ + E+ D
Sbjct: 61 RHLEEVAAARNPGPTRWTEESWKQRAASREDSQRPGAHLTVKKIFVGGIKGDAEEHHLRD 120
Query: 141 YFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
F Q G E + ++T++ +G KRGFAF+ F
Sbjct: 121 DFEQDGKTEVIEIMTDRGSGKKRGFAFVTF 150
Score = 129 (50.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 27/96 (28%), Positives = 53/96 (55%)
Query: 33 EDSQCSEPE-SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
EDSQ +++K+F+GG+ + L+ FEQ G+ + +M D + + RGF F+T
Sbjct: 90 EDSQRPGAHLTVKKIFVGGIKGDAEEHHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVT 149
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR 127
+ + VD+ + + H ++G E ++A+ ++ R
Sbjct: 150 FDDHDSVDKIVIQKYHTVNGHGCEVRKALSKQEMAR 185
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 192 (72.6 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 44/141 (31%), Positives = 73/141 (51%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
E+ ++ +K+F+GG+ N++ L + F Q+GE+ V D RSRGF F+ +
Sbjct: 18 ENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMD---YFGQYGTIE 149
+ + A++ R I G+ VE K A RE K V + + D +F Q+G ++
Sbjct: 78 TTGEGCKLALAAREQTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVD 137
Query: 150 SVNMVTNKETGAKRGFAFIEF 170
+ +K+T A+R FAFI F
Sbjct: 138 DIEWPFDKQTKARRNFAFIVF 158
Score = 137 (53.3 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 31/96 (32%), Positives = 51/96 (53%)
Query: 27 IINKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRG 86
I K++E E+ +K+F+GGL ++ L++ FEQ+G++ D+ D TK R
Sbjct: 94 IKGKSVEVKPAKSREN-KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRN 152
Query: 87 FGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPR 122
F FI + E + D+A S R + K+AVP+
Sbjct: 153 FAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQ 188
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 192 (72.6 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 49/108 (45%), Positives = 66/108 (61%)
Query: 76 MKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR-----RVT 130
M+DP TKRSRGFGF+TYS + VD AM RPH+ RVVE KRAV RE V+ V
Sbjct: 1 MRDPKTKRSRGFGFVTYSCVEEVDAAMYARPHK---RVVEPKRAVSREDSVKPGAHLTVK 57
Query: 131 KVQIA-----LEQM---DYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
K+ + E+ D F YG IE++ ++ ++++G KRG AF+ F
Sbjct: 58 KIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTF 105
Score = 138 (53.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + +L+ FE +G+I + VM+D + + RG F+T+ + VD+
Sbjct: 55 TVKKIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKI 114
Query: 102 MSNRPHEIDGRVVETKRAVPRE 123
+ + H I+G E K+A+ ++
Sbjct: 115 VVQKYHTINGHNCEVKKALSKQ 136
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 193 (73.0 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 51/154 (33%), Positives = 83/154 (53%)
Query: 30 KAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGF 89
K S E + KLFIGGL +T L +++QWG++ D VV++DP +++SR F
Sbjct: 2 KKTSKSVLLELKKKEKLFIGGLSSQTTGKGLN-YYKQWGKL-DCVVIRDPTSQKSR-FIL 58
Query: 90 ITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE--------VKVRRV-----TKVQIAL 136
+ + VD A + P IDG++V K AVPRE V V+++ T+
Sbjct: 59 LHFHPWLRVDAARAATPRSIDGKMVAPKHAVPREDYGKPGPLVTVKKLFIGGLTEDTEEH 118
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEF 170
DYF +Y I+++ ++T++++ RGF F+ F
Sbjct: 119 HLRDYFEKYEKIDAIEIITDRQSSKIRGFGFVTF 152
Score = 138 (53.6 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 27/88 (30%), Positives = 54/88 (61%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++KLFIGGL T + L+ +FE++ +I + ++ D + + RGFGF+T+ + VD+
Sbjct: 102 TVKKLFIGGLTEDTEEHHLRDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKL 161
Query: 102 MSNRPHEIDGRVVETKRAVPREVKVRRV 129
+ H ++G E ++A+ + K++ V
Sbjct: 162 LQKN-HTVNGHHAEVRKALSQS-KIQEV 187
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 41 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 100
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 101 IHFHEINNKMVECKKAQPKEV 121
Score = 107 (42.7 bits), Expect = 0.00088, P = 0.00088
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTK----------VQIALEQM-DYFGQYG 146
VD+ ++ HE+D + ++ K A PR + + VT+ V +E + YF Q+G
Sbjct: 6 VDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFG 65
Query: 147 TIESVNMVTNKETGAKRGFAFIEF 170
++ ++ +K T RGF F+ F
Sbjct: 66 KVDDAMLMFDKTTNRHRGFGFVTF 89
>UNIPROTKB|J9P0Y4 [details] [associations]
symbol:J9P0Y4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03013644
Ensembl:ENSCAFT00000045249 OMA:SEEGYNG Uniprot:J9P0Y4
Length = 223
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIV-------DVVVMKDPVTKRSRGFGFITYSES 95
L+KLF GGL + T D+SL++ EQWG + D VV++D TKRSR FG+ T E
Sbjct: 1 LQKLFFGGLSFETTDESLRSHSEQWGILTVVCVLMRDYVVLRDSNTKRSRSFGYATMGE- 59
Query: 96 KMVDEAMSNRPHEIDGRVVETKRAVPREVKVR 127
V+ M+ +PH++DG VE KR + +E R
Sbjct: 60 --VEAIMNGKPHKVDGIAVELKRPISKESSQR 89
Score = 131 (51.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 72 DVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKVR---R 128
D VV++D TKRSR FG+ T E V+ M+ +PH++DG VE KR + +E R
Sbjct: 37 DYVVLRDSNTKRSRSFGYATMGE---VEAIMNGKPHKVDGIAVELKRPISKESSQRPGAH 93
Query: 129 VT--KVQIA-----LEQ---MDYFGQYGTIESVN 152
+T K+ + E+ DYF QYG IE ++
Sbjct: 94 LTLRKIFVGGIKEDAEEHHLRDYFEQYGKIEMID 127
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 49 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 108
Query: 104 NRPHEIDGRVVETKRAVPREV 124
HEI+ ++VE K+A P+EV
Sbjct: 109 IHFHEINNKMVECKKAQPKEV 129
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 189 (71.6 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KLF+GG+ + T++D L+ F +GE+ +VM+D +T R RGFGF+ +S+ ++D +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 105 RPHEIDGRVVETKRAVPRE 123
+ H ID R V+ KRA+ RE
Sbjct: 67 K-HSIDTREVDVKRAMSRE 84
Score = 182 (69.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+K+F+GGL D+ + +FE +G + DV +M D T R RGFGF+++ VD +
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 104 NRPHEIDGRVVETKRAVPRE 123
H++ G+ VE KRA+P++
Sbjct: 170 KTFHDLSGKQVEVKRALPKD 189
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 184 (69.8 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGFIT+ + +
Sbjct: 50 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 109
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
VD+A++ H+I G+ VE KRA PR+ K
Sbjct: 110 VDQAVNMHFHDIMGKKVEVKRAEPRDSK 137
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 184 (69.8 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 43/138 (31%), Positives = 76/138 (55%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
RKL + G+ + + D LK + ++G++ D +VMKD T RSRGFG++T++ ++ A+
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 104 NRPHEIDGRVVETKRAVPREVK---VRRVTKVQIA-----LEQMDY---FGQYGTIESVN 152
H + R++E K A P+E ++VT++ +A + + D+ F +YG I +
Sbjct: 63 GE-HFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLY 121
Query: 153 MVTNKETGAKRGFAFIEF 170
M + + RG FI F
Sbjct: 122 MPKDYNSKQHRGIGFITF 139
Score = 159 (61.0 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 35/103 (33%), Positives = 55/103 (53%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+G L + D L+ +F ++G I D + KDP RGFGF+T++E+ + D ++
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADR-VAR 299
Query: 105 RPHEIDGRVVETKRAVPR-EVKVRRVTKVQIALEQMDYFGQYG 146
R HEI G+ V A P E ++ + +YFG YG
Sbjct: 300 RSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYG 342
Score = 144 (55.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 28 INKAMEDSQCSEP-ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRG 86
+ A + +P + + ++F+ + ++ ++ FE++GEI D+ + KD +K+ RG
Sbjct: 74 VKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRG 133
Query: 87 FGFITYSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
GFIT+S + V++ M + H++ G V RA P+E
Sbjct: 134 IGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPKE 169
>UNIPROTKB|F1M0Z9 [details] [associations]
symbol:F1M0Z9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 IPI:IPI00393308
Ensembl:ENSRNOT00000034921 Uniprot:F1M0Z9
Length = 71
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 30/68 (44%), Positives = 48/68 (70%)
Query: 58 DSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNRPHEIDGRVVETK 117
DSL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD+ + HE+D + ++ K
Sbjct: 1 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPK 60
Query: 118 RAVPREVK 125
A PR +
Sbjct: 61 VAFPRRAQ 68
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 35/76 (46%), Positives = 52/76 (68%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM-S 103
KLFIGGL++ TN++SL+ F ++G+I +VVV+KD TKRSRGFGF+T+ +AM +
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 104 NRPHEIDGRVVETKRA 119
+DGR + +A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE-SKMVDEAMS 103
KLFIGGL++ TN+D L+ F ++G I +VVV+KD TKRSRGFGF+T+ D M+
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 104 NRPHEIDGRVVETKRA 119
+DGR + +A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM-S 103
KLF+GGL++ T ++SL+ F ++G++ +VVV+KD +KRSRGFGF+T+ + +AM +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 104 NRPHEIDGRVVETKRA 119
+DGR + +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 43 LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAM 102
+ KLFIGGL + T DD L+ F ++G I + VV+KD T RSRGFGF+ ++ D AM
Sbjct: 1 MAKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAM 60
Query: 103 -SNRPHEIDGRVVETKRAVPR 122
+ E DGR++ +A R
Sbjct: 61 GAMNNQEFDGRIIRVDKASER 81
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE-SKMVDEAMS 103
KLF+GGL + TN+ SL+ F ++G+I +VVV+KD T+RSRGFGF+T+ D M+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 104 NRPHEIDGRVVETKRA 119
+DGR + +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE-SKMVDEAMS 103
KLF+GGL + TN+ SL+ F ++G+I +VVV+KD T+RSRGFGF+T+ D M+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 104 NRPHEIDGRVVETKRA 119
+DGR + +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE-SKMVDEAMS 103
KLF+GGL + TN+ SL+ F ++G+I +VVV+KD T+RSRGFGF+T+ D M+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 104 NRPHEIDGRVVETKRA 119
+DGR + +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE-SKMVDEAMS 103
KLF+GGL + TN+ SL+ F ++G+I +VVV+KD T+RSRGFGF+T+ D M+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 104 NRPHEIDGRVVETKRA 119
+DGR + +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
WARNING: HSPs involving 585 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 306 246 0.0010 113 3 11 22 0.43 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 835
No. of states in DFA: 593 (63 KB)
Total size of DFA: 171 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.24u 0.09s 18.33t Elapsed: 00:00:16
Total cpu time: 18.28u 0.09s 18.37t Elapsed: 00:00:17
Start: Thu Aug 15 13:24:30 2013 End: Thu Aug 15 13:24:47 2013
WARNINGS ISSUED: 2