RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14686
(306 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 92.4 bits (228), Expect = 2e-23
Identities = 82/155 (52%), Positives = 106/155 (68%), Gaps = 13/155 (8%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 99 DEAMSNRPHEIDGRVVETKRAVPR-------------EVKVRRVTKVQIALEQMDYFGQY 145
D AM+ RPH++DGRVVE KRAV R ++ V + + DYF QY
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 121
Query: 146 GTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
G IE + ++T++ +G KRGFAF+ FDD+D VDKIV
Sbjct: 122 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 156
Score = 70.0 bits (170), Expect = 4e-15
Identities = 24/92 (26%), Positives = 54/92 (58%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
+ + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+T
Sbjct: 86 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 145
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPRE 123
+ + VD+ + + H ++G E ++A+ ++
Sbjct: 146 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 177
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 88.9 bits (220), Expect = 4e-23
Identities = 55/82 (67%), Positives = 67/82 (81%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
EPE LRKLFIGGL + T D+SL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 99 DEAMSNRPHEIDGRVVETKRAV 120
D AM+ RPH++DGRVVE KRAV
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAV 83
Score = 33.5 bits (76), Expect = 0.004
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+F Q+GT+ ++ + T RGF F+ + + VD +
Sbjct: 25 SHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 89.0 bits (220), Expect = 5e-23
Identities = 53/85 (62%), Positives = 66/85 (77%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E E RKLFIGGL + T ++SL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 99 DEAMSNRPHEIDGRVVETKRAVPRE 123
D AM+ RPH IDGRVVE KRAV RE
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVARE 100
Score = 33.9 bits (77), Expect = 0.005
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+Y+ Q+G + ++ + + RGF F+ F VD +
Sbjct: 39 NYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 78.5 bits (193), Expect = 2e-19
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GGL T ++ ++ +F +GE+ + + D T + RGF FIT+ E + V + M
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 105 RPHEIDGRVVETKRA 119
+ H + E K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 33.4 bits (76), Expect = 0.005
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196
+YFG +G +ES+ + + +T +RGF FI F + + V K ++E +
Sbjct: 18 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK-------IMEKKYHNVGL 67
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 78.1 bits (192), Expect = 3e-19
Identities = 35/75 (46%), Positives = 54/75 (72%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL + T LK +F ++GE+VD + DP+T RSRGFGF+ + ES+ VD+ M
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 105 RPHEIDGRVVETKRA 119
+ H+++G+V++ KRA
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 31.1 bits (70), Expect = 0.023
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
DYF ++G + + + TG RGF F+ F + + VDK++
Sbjct: 18 DYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 58
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 78.5 bits (193), Expect = 4e-19
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
+ L + GL ++T + LK +F +GE++ V V KD T S+GFGF+ ++E + +
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 101 AMSNRPHEIDGRVVETKRAVPRE 123
MS R H IDGR + K ++
Sbjct: 66 VMSQR-HMIDGRWCDCKLPNSKQ 87
Score = 32.6 bits (74), Expect = 0.009
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+YF +G + V + + +TG +GF F+ F +Y+ K++
Sbjct: 27 EYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 67
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 77.3 bits (190), Expect = 7e-19
Identities = 33/75 (44%), Positives = 55/75 (73%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+FIGGL ++T + L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD+ ++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 105 RPHEIDGRVVETKRA 119
HE+D + ++ K A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 35.7 bits (82), Expect = 6e-04
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196
+YFGQ+G ++ ++ + T RGF F+ F D VDK VL + ++
Sbjct: 19 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK-------VLAQSRHELDS 68
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 74.3 bits (182), Expect = 2e-17
Identities = 20/97 (20%), Positives = 43/97 (44%)
Query: 30 KAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGF 89
+ D+ E R +F L R L+ FF G++ DV ++ D ++RS+G +
Sbjct: 5 REPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAY 64
Query: 90 ITYSESKMVDEAMSNRPHEIDGRVVETKRAVPREVKV 126
+ + E + V A+ + G + + + + ++
Sbjct: 65 VEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRL 101
Score = 32.3 bits (73), Expect = 0.015
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
D+F G + V +++++ + +G A++EF + V +
Sbjct: 37 DFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 77
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 72.1 bits (176), Expect = 9e-17
Identities = 11/81 (13%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV-----MKDPVTKRSRGFGFITYSESKMV 98
R+L++G + + ++++ FF + + + + + F F+ +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 99 DEAMSNRPHEIDGRVVETKRA 119
+AM+ G+ ++ +R
Sbjct: 62 TQAMAFDGIIFQGQSLKIRRP 82
Score = 33.2 bits (75), Expect = 0.006
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 137 EQMDYFGQYGTIESVN-----MVTNKETGAKRGFAFIEFDDYDVVDKIV 180
MD+F + + V + + FAF+EF D + +
Sbjct: 17 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 65
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 71.5 bits (175), Expect = 1e-16
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 36 QCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDP-VTKRSRGFGFITYSE 94
Q + ++ K+ + + ++ N ++ F +GE+ V + K T RGFGF+ +
Sbjct: 1 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 60
Query: 95 SKMVDEAMSNRPH--EIDGRVVETKRAVPRE 123
+ +A + H + GR + + A
Sbjct: 61 KQDAKKAFNALCHSTHLYGRRLVLEWADSEV 91
Score = 34.9 bits (80), Expect = 0.002
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 139 MDYFGQYGTIESVNMVTNKE-TGAKRGFAFIEFDDYDVVDKIV 180
+ F +G +++V + TGA RGF F++F K
Sbjct: 26 RELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 67.8 bits (165), Expect = 3e-15
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
M SQ + + K+F+GGL Y T D SL+ +FE +G+I + VV+ D T +SRG+GF+T
Sbjct: 1 MHGSQ--KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 58
Query: 92 YSESKMVDEAMSNRPHEIDGRVVETKRAVPR 122
++ + A + IDGR A
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLG 89
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 65.5 bits (159), Expect = 2e-14
Identities = 24/79 (30%), Positives = 50/79 (63%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
+++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+T+ + VD+
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 102 MSNRPHEIDGRVVETKRAV 120
+ + H ++G E ++A+
Sbjct: 61 VIQKYHTVNGHNCEVRKAL 79
Score = 24.7 bits (53), Expect = 5.7
Identities = 25/41 (60%), Positives = 33/41 (80%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
DYF QYG IE + ++T++ +G KRGFAF+ FDD+D VDKIV
Sbjct: 21 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 61
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 65.4 bits (159), Expect = 2e-14
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
SE +++GGLD + ++ L F Q G +V+ + KD VT + +G+GF+ + +
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 98 VDEAMSN-RPHEIDGRVVETKRAVPRE 123
D A+ ++ G+ + +A
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAHN 90
Score = 26.1 bits (57), Expect = 1.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+ F Q G + + +M ++ TG +G+ F+EF + D +
Sbjct: 28 ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 68
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 64.8 bits (157), Expect = 3e-14
Identities = 30/75 (40%), Positives = 49/75 (65%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
K+F+GGL T + +K +FEQ+G++ D ++M D T R RGFGF+T+ +V++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 105 RPHEIDGRVVETKRA 119
HEI+ ++VE K+A
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 26.6 bits (58), Expect = 0.88
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196
YF Q+G ++ ++ +K T RGF F+ F+ D+V+K V E+ IN
Sbjct: 18 HYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-------VCEIHFHEINN 67
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 65.1 bits (158), Expect = 3e-14
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+F+G +D L+ FF Q+G+++DV + K R F F+T+++ ++
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCG 60
Query: 104 NRPHEIDGRVVETKRAVPRE 123
I G V A P+
Sbjct: 61 E-DLIIKGISVHISNAEPKH 79
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 64.3 bits (156), Expect = 5e-14
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
KLFIGGL NDD +K +G + ++KD T S+G+ F Y + + D+A++
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 104 N-RPHEIDGRVVETKRAVPR 122
++ + + +RA
Sbjct: 62 GLNGMQLGDKKLLVQRASVG 81
Score = 26.5 bits (58), Expect = 1.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 139 MDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+ +G +++ N+V + TG +G+AF E+ D +V D+ +
Sbjct: 19 KELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 63.5 bits (154), Expect = 1e-13
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
R L++GGL +D L A F +G+I D+ + D T++ RGF F+ + ++ A+
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 104 N-RPHEIDGRVVETKRAVPREVK 125
N E+ GR + A P +K
Sbjct: 66 NMNESELFGRTIRVNLAKPMRIK 88
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 62.8 bits (152), Expect = 2e-13
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 46 LFIGGLDYRTNDDSLKAFFEQWGEI-VDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
+FIG LD ++ L F +G I +M+DP T S+G+ FI ++ D A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 105 -RPHEIDGRVVETKRAVPREVK 125
+ R + A ++ K
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
Score = 26.2 bits (57), Expect = 1.4
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 140 DYFGQYGTIESVNMV-TNKETGAKRGFAFIEFDDYDVVDKIV 180
D F +G I + + +TG +G+AFI F +D D +
Sbjct: 17 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 58
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 62.3 bits (150), Expect = 3e-13
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
SE + LFIG L+ + LK + D+ V+ T +R FG++ + ++
Sbjct: 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAED 66
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPR 122
+++A+ ++ G ++ ++ R
Sbjct: 67 LEKALELTGLKVFGNEIKLEKPKGR 91
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 61.5 bits (149), Expect = 4e-13
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
L++G L + L F G I+ + V +D +T+RS G+ ++ + + + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 105 RP-HEIDGRVVETKRA 119
I G+ V +
Sbjct: 62 MNFDVIKGKPVRIMWS 77
Score = 33.7 bits (77), Expect = 0.004
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+ F G I S+ + + T G+A++ F ++ +
Sbjct: 19 EKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 59
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 60.9 bits (147), Expect = 1e-12
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVV--VMKDPVTKRSRGFGFITYSESKMVDEA- 101
+LFIGG+ + + + E V V ++RGF F+ Y + A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 102 --MSNRPHEIDGRVVETKRAVPRE 123
+ ++ G + A P
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEI 86
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 60.9 bits (147), Expect = 1e-12
Identities = 15/80 (18%), Positives = 32/80 (40%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
F+G L Y ++S+K FF + + +R +GFG+ + + + A+S
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 104 NRPHEIDGRVVETKRAVPRE 123
+ + + A +
Sbjct: 76 LNEESLGNKRIRVDVADQAQ 95
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 59.8 bits (144), Expect = 2e-12
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
KLF+GGL + TN+ SL+ F ++G+I +VVV+KD T+RSRGFGF+T+ +AM
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 104 N-RPHEIDGRVVETKRAVPRE 123
+DGR + +A
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSS 86
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 59.3 bits (143), Expect = 3e-12
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS- 103
KL+IG L D L+ F + V+ G+ F+ Y + A+
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIET 56
Query: 104 -NRPHEIDGRVVETKRAVPRE 123
+ E+ G+++E +V ++
Sbjct: 57 LSGKVELHGKIMEVDYSVSKK 77
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 58.9 bits (142), Expect = 4e-12
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S + + + + + D + FF + I V +K G + +
Sbjct: 4 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 63
Query: 98 VDEAMSNRP-HEIDGRVVETKRA 119
A+ + I R V+
Sbjct: 64 ATAAVIDLNDRPIGSRKVKLVLG 86
Score = 27.3 bits (60), Expect = 0.79
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
E +D+F Y I + E G G A + F+ D V
Sbjct: 25 EILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 68
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 59.6 bits (144), Expect = 5e-12
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
PE R L+I L Y+ + + F ++G I ++ T +RG ++ Y +
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAK 60
Query: 100 EAMSN-RPHEIDGRVVETKRAVPREVKVRRVTKVQ 133
A + + R + + TK +
Sbjct: 61 NACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKK 95
Score = 29.6 bits (66), Expect = 0.18
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDK 178
E D FG+YG I + + T RG A++ ++D
Sbjct: 23 EMYDIFGKYGPIRQIRV---GNTPETRGTAYVVYEDIFDAKN 61
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 59.0 bits (142), Expect = 5e-12
Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S +LF+ L Y ++++ L+ F +G + ++ D +TK+ +GF F+T+ +
Sbjct: 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEH 62
Query: 98 VDEAMSN-RPHEIDGRVVETKRAVPREVKVRR 128
+A + GR++ + ++ +
Sbjct: 63 AVKAYAEVDGQVFQGRMLHVLPSTIKKEASQS 94
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 59.1 bits (142), Expect = 6e-12
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S+ + +FI L + + +++L +Q+G++ V V+ P T+ S+G F + +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 98 VDEAMSNRPH-------EIDGRVVETKRAVPRE 123
+ ++ ++DGR ++ AV R+
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 95
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 58.2 bits (140), Expect = 8e-12
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
+ P+ L + GL T + L+ F ++G I DV ++ D ++RSRGF F+ +
Sbjct: 4 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 63
Query: 98 VDEAMSN-RPHEIDGRVVE 115
EA E+DGR +
Sbjct: 64 AKEAKERANGMELDGRRIR 82
Score = 25.0 bits (54), Expect = 4.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+ F +YG I V++V ++++ RGFAF+ F++ D +
Sbjct: 28 EVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 68
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 58.3 bits (141), Expect = 9e-12
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 38 SEPESL-RKLFIGGLD-YRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSES 95
++P S+ ++FIG L+ ++A F ++G+IV V +GF F+ Y
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNE 60
Query: 96 KMVDEAMSNRP-HEIDGRVVETKRAVPRE 123
+ A++ I G+V++ A +
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPK 89
Score = 31.0 bits (70), Expect = 0.038
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
F +YG I ++ +GFAF+++ + V
Sbjct: 35 AIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAV 67
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 58.0 bits (140), Expect = 9e-12
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
L++G L + T ++ + F + G+I +++ D + K + GF F+ Y + AM
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 104 N-RPHEIDGRVVETKRAVPRE 123
+D R++ T +
Sbjct: 68 YINGTRLDDRIIRTDWDAGFK 88
Score = 27.2 bits (60), Expect = 0.79
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+ F + G I+ + M +K GF F+E+ + +
Sbjct: 26 ELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 58.2 bits (140), Expect = 1e-11
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
++L + + +R D L+ F Q+G+I+DV ++ + + S+GFGF+T+ S D A
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRARE 69
Query: 104 N-RPHEIDGRVVETKRAVPR 122
++GR +E A R
Sbjct: 70 KLHGTVVEGRKIEVNNATAR 89
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 57.3 bits (138), Expect = 2e-11
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 46 LFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDP---VTKRSRGFGFITYSESKMVDEAM 102
LFI L++ T +++LK F + G I + K S GFGF+ Y + + +A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 103 SN-RPHEIDGRVVETKRAVPRE 123
+ H +DG +E + +
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
Score = 28.8 bits (64), Expect = 0.19
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 140 DYFGQYGTIESVNMVTNKE---TGAKRGFAFIEFDDYDVVDKIV 180
F + G I+S + K GF F+E+ + K +
Sbjct: 17 GVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 57.5 bits (138), Expect = 2e-11
Identities = 14/93 (15%), Positives = 38/93 (40%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
+ + + + GL + + + + FF + + + + RS G F+ +
Sbjct: 5 SSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQF 64
Query: 93 SESKMVDEAMSNRPHEIDGRVVETKRAVPREVK 125
+ ++ ++A+ I R +E ++ EV+
Sbjct: 65 ASQEIAEKALKKHKERIGHRYIEIFKSSRAEVR 97
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 57.0 bits (137), Expect = 2e-11
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+ + L T + L+ F +G I + + KD T +S+GF FI++ + A++
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 104 N-RPHEIDGRVVETKRAVPRE 123
D ++ + A P
Sbjct: 69 GVSGFGYDHLILNVEWAKPST 89
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 57.0 bits (137), Expect = 3e-11
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 35 SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE 94
SQ PE LFI L D L F +G +V V D T S+ FGF++Y
Sbjct: 11 SQKEGPEG-ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 69
Query: 95 SKMVDEAMSN-RPHEIDGRVVETKRAVPRE 123
A+ + +I + ++ + +
Sbjct: 70 PVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 99
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 56.2 bits (135), Expect = 4e-11
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
L++ GL L+ F Q+G I+ ++ D VT SRG GFI + + +EA+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 104 N-RPHEIDGR 112
+ G
Sbjct: 67 GLNGQKPSGA 76
Score = 31.9 bits (72), Expect = 0.017
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 139 MDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
F QYG I + ++ ++ TG RG FI FD ++ +
Sbjct: 24 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 56.1 bits (135), Expect = 5e-11
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA-- 101
L++ L DD L F ++G IV +++D +T R RG F+ Y++ + EA
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 102 -MSNRPHEIDGRVVETKRA 119
++N E + + + A
Sbjct: 67 ALNNVIPEGGSQPLSVRLA 85
Score = 33.4 bits (76), Expect = 0.004
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
FG+YG+I N++ +K TG RG AF+ ++ + + +
Sbjct: 25 TIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 65
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 56.2 bits (135), Expect = 5e-11
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 42 SLRK-----LFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESK 96
SLRK +FI LD ++ +L F +G I+ V+ D S+G+GF+ + +
Sbjct: 2 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 59
Query: 97 MVDEAMSN-RPHEIDGRVVETKRAVPRE 123
+ A+ ++ R V R R+
Sbjct: 60 AAERAIEKMNGMLLNDRKVFVGRFKSRK 87
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 55.8 bits (134), Expect = 8e-11
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 32 MEDSQCSE-PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFI 90
+ED S+ + R L L + +D LK FE EI +S+G +I
Sbjct: 4 LEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI-----RLVSQDGKSKGIAYI 58
Query: 91 TYSESKMVDEAMSN-RPHEIDGRVVETKRAVPR 122
+ ++ + + EIDGR V +
Sbjct: 59 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 55.0 bits (132), Expect = 1e-10
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
S L + L D L A F G I +M+D T S G+ F+ ++ A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 102 MSN-RPHEIDGRVVETKRAVP 121
+ + + ++ A P
Sbjct: 61 IKVLNGITVRNKRLKVSYARP 81
Score = 28.4 bits (63), Expect = 0.29
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 139 MDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
F G I + ++ + +TG G+AF++F + +
Sbjct: 20 YALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 56.0 bits (134), Expect = 1e-10
Identities = 12/87 (13%), Positives = 34/87 (39%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S E+ +++ GL + + + FF++ + D + + ++ G GF+ +
Sbjct: 13 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 72
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREV 124
A+ + R ++ + +
Sbjct: 73 YKAALCRHKQYMGNRFIQVHPITKKGM 99
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 55.0 bits (132), Expect = 1e-10
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 41 ESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDE 100
S++ L++ L T+++ ++ F K+ R + F+ +S + E
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNREDAVE 59
Query: 101 AMSN-RPHEIDGRVVETKRAVPRE 123
AM +DG +E A P +
Sbjct: 60 AMKALNGKVLDGSPIEVTLAKPVD 83
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 55.6 bits (133), Expect = 1e-10
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVV--------MKDPVTKRSRGFGF 89
E +++ GL+ D L FF+Q G + D T + +G
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 90 ITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPRE 123
++Y + A+ + G ++ A +
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 97
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 54.8 bits (131), Expect = 1e-10
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 44 RKLFIGGLDYR-TNDDSLKAFFEQ-WGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
R++ I L +++ L+ FE + + F+ + + A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 102 MSNRPHEIDGRVVETKRAVPR 122
+ + R + A +
Sbjct: 65 LQMNRSLLGNREISVSLADKK 85
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 55.7 bits (133), Expect = 2e-10
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 35 SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE 94
EP+ LR L + + ++ L+ FE++G I V ++ D T++SRG+GF+ +
Sbjct: 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQS 93
Query: 95 SKMVDEAMSN-RPHEIDGRVVETKRAVPREVK 125
+A++ I + ++ A +
Sbjct: 94 GSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 54.9 bits (131), Expect = 2e-10
Identities = 7/82 (8%), Positives = 23/82 (28%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
I + + + F E + V + + G + + ++
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 104 NRPHEIDGRVVETKRAVPREVK 125
+++GR +++
Sbjct: 69 LHRKKLNGREAFVHVVTLEDMR 90
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 53.5 bits (128), Expect = 4e-10
Identities = 12/80 (15%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
++++G L ++ F ++G I D+ + F F+ + + + ++A+
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP---PFAFVEFEDPRDAEDAVY 71
Query: 104 NRP-HEIDGRVVETKRAVPR 122
R ++ DG + +
Sbjct: 72 GRDGYDYDGYRLRVEFPRSG 91
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 53.3 bits (127), Expect = 8e-10
Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+ L++ L R + L + F ++ E + +T R RG FIT+ ++ +A+
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 104 N-RPHEIDGRVVETKRAVPREVK 125
+++ G+++ + ++ +
Sbjct: 79 LVNGYKLYGKILVIEFGKNKKQR 101
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 52.4 bits (125), Expect = 9e-10
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 42 SLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA 101
S L + L + ++ F GEI +++D +T +S G+GF+ Y + K ++A
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 102 MSN-RPHEIDGRVVETKRAVP 121
++ + + ++ A P
Sbjct: 61 INTLNGLRLQTKTIKVSYARP 81
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 52.0 bits (124), Expect = 2e-09
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
LF+ + +D ++ F +GEI ++ + D T S+G+ + Y K A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 104 N-RPHEIDGRVVETKRAVPR 122
EI G+ ++ +
Sbjct: 68 ALNGAEIMGQTIQVDWCFVK 87
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.1 bits (124), Expect = 2e-09
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
+ SLR +F+G + Y ++ LK F + G +V ++ D T + +G+GF Y + +
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 98 VDEAMSNRP-HEIDGRVVETKRAVPREVKVRR 128
AM N E GR + A + K
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASEKNKEEL 94
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 50.7 bits (121), Expect = 3e-09
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
KL + LD+ +D ++ F ++G + V D + RS G + + +AM
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 60
Query: 105 -RPHEIDGRVVETKRA 119
+DGR + +
Sbjct: 61 YNGVPLDGRPMNIQLV 76
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 51.1 bits (122), Expect = 3e-09
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 33 EDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITY 92
ED ++ GG+ D ++ F +G+I+++ V + + F+ +
Sbjct: 8 EDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRF 61
Query: 93 SESKMVDEAMSN-RPHEIDGRVVETKRAVPR 122
S + A+ + I+G VV+
Sbjct: 62 STHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 51.3 bits (122), Expect = 3e-09
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
+ + + + GL YR ++ + FF + + + R G + ++ +
Sbjct: 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHED 67
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVK 125
AM+ + R VE
Sbjct: 68 AVAAMAKDKANMQHRYVELFLNSTAGTS 95
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 50.8 bits (121), Expect = 4e-09
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 32 MEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFIT 91
MED +P R L++G L + + F Q G ++ + + + F+
Sbjct: 2 MEDD--GQP---RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVE 54
Query: 92 YSESKMVDEAMSNRP-HEIDGRVVETKRAVPR 122
+ E + A++ +I G+ V+ A
Sbjct: 55 FYEHRDAAAALAAMNGRKILGKEVKVNWATTP 86
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 49.0 bits (116), Expect = 1e-08
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
L++ +++ + + + + SR F +I + + +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 104 N-RPHEIDGRVVETKRAVP 121
+I+G + TK + P
Sbjct: 62 KLNGLKIEGYTLVTKVSNP 80
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 49.6 bits (118), Expect = 2e-08
Identities = 9/94 (9%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
+ + ++ + L Y D L F ++G ++ ++ ++ + Y++
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVS 57
Query: 98 VDEA---MSNRPHEIDGRVVETKRAVPREVKVRR 128
A + + + + + V+
Sbjct: 58 AQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKY 91
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 48.0 bits (114), Expect = 3e-08
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+LF+G L ++ ++ FE++G+ +V + KD FGFI + + A
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKV 62
Query: 104 NRP-HEIDGRVVETKRAVPR 122
+ G+ + + A
Sbjct: 63 ELDNMPLRGKQLRVRFACHS 82
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 48.0 bits (114), Expect = 3e-08
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
+ + G + L F Q+G I+ V+ + I Y +A+S
Sbjct: 6 WVTVFGFPQASASYILLQFA-QYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK 58
Query: 105 RPHEIDGRV-VETKRAVPREV 124
+ + K + + V
Sbjct: 59 DGRIFGESIMIGVKPCIDKNV 79
Score = 25.7 bits (56), Expect = 2.7
Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 13/60 (21%)
Query: 137 EQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEVDQEVING 196
+ F QYG I M + I + K L D +
Sbjct: 19 YILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARK-------ALSKDGRIFGE 65
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 46.6 bits (110), Expect = 9e-08
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 40 PESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
P L++ G D L+ F +G I+D+ + F+TY + + D
Sbjct: 2 PRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESAD 53
Query: 100 EAMSN-RPHEIDGRVVETKRAVPREV 124
+A++ +++ ++ A + +
Sbjct: 54 QAVAELNGTQVESVQLKVNIARKQPM 79
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 47.0 bits (111), Expect = 1e-07
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 44 RKLFIGGLDYRTNDDSLK----AFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
++I L+ + D LK A F ++G+I+D++V + + RG F+ + E
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL---KMRGQAFVIFKEVSSAT 60
Query: 100 EAMSN-RPHEIDGRVVETKRAVPREVKVRRV 129
A+ + + + + + A + ++
Sbjct: 61 NALRSMQGFPFYDKPMRIQYAKTDSDIIAKM 91
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 46.0 bits (108), Expect = 1e-07
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
+ + L N + + +F+ G I+ V V K++ F I ++ A++
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL--KKNFRFARIEFARYDGALAAITK 59
Query: 105 RPHEIDGRVVETKRA 119
+ +
Sbjct: 60 THKVVGQNEIIVSHL 74
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 43.9 bits (103), Expect = 1e-06
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 38 SEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKM 97
S + GGL + + L E+ G + +++ + + F Y ++
Sbjct: 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEE 68
Query: 98 VDEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQ 133
A ++G+ V + + V KVQ
Sbjct: 69 SKRAY----VTLNGKEVVDDLGQKITLYLNFVEKVQ 100
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 43.6 bits (102), Expect = 1e-06
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
R ++I G D +K + E G++++ + M+ + K +G F+ + + + +
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 104 NRPHEIDGRVVETKRA 119
+ +
Sbjct: 66 TPGQKYKETDLLILFK 81
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 42.9 bits (100), Expect = 2e-06
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFE---QWGEIVDVVVMKDPVTKRS---RGFGFITYSESKM 97
+F+ GL R D + E ++G+I VV+ S ++TY S+
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 98 VDEAMSN-RPHEIDGRVV 114
A+ +DGR +
Sbjct: 69 ALRAIQCVNNVVVDGRTL 86
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 42.9 bits (100), Expect = 4e-06
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 28 INKAMEDSQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGF 87
+ M Q +P L+I L ++ L+ + +G++ + + SRG
Sbjct: 6 VQAQMAKQQEQDP---TNLYISNLPLSMDEQELENMLKPFGQV-ISTRILRDSSGTSRGV 61
Query: 88 GFITYSESKMVDEAMSN-RPHEIDGRVVETKRAVPREVK 125
GF ++ + + + I + P K
Sbjct: 62 GFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCK 100
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 40.9 bits (95), Expect = 1e-05
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 46 LFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN- 104
L+I GL T D L + +G+IV + D T + +G+GF+ + +A++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 105 RPHEIDGRVV 114
+ + ++
Sbjct: 61 KASGVQAQMA 70
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 40.9 bits (95), Expect = 1e-05
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 8/86 (9%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
S ++ + GL + LK + + G G + Y + +
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREA-------GDVCYADVQKDGMGMVEYLRKEDM 63
Query: 99 DEAMSN-RPHEIDGRVVETKRAVPRE 123
+ A+ + ET
Sbjct: 64 EYALRKLDDTKFRSHEGETSYIRVYP 89
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.2 bits (96), Expect = 1e-05
Identities = 11/97 (11%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 20 TVVPLAMIINKAMEDSQCSEPES-LRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKD 78
T+ L + N S + + + ++ E++GE+ ++ V +
Sbjct: 3 TIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN 62
Query: 79 PVTKRSRGFGFITYSESKMVDEAMSN-RPHEIDGRVV 114
G ++ + + ++A+ + +G+ +
Sbjct: 63 L-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98
Score = 28.5 bits (63), Expect = 0.40
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 139 MDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDKIV 180
+ +YG +E +N+ N G +++F + +K V
Sbjct: 45 TEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAV 85
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 40.9 bits (95), Expect = 2e-05
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 2/108 (1%)
Query: 39 EPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMV 98
E F G LD +T + L F GEI + ++ E+
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKE--KAKEALGK 64
Query: 99 DEAMSNRPHEIDGRVVETKRAVPREVKVRRVTKVQIALEQMDYFGQYG 146
+ +N ++ + V + K ++ E ++ + G
Sbjct: 65 AKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKG 112
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 39.0 bits (90), Expect = 7e-05
Identities = 9/87 (10%), Positives = 20/87 (22%), Gaps = 12/87 (13%)
Query: 45 KLFIGGLD-----YRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVD 99
L + ++ F + + K I +S
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAA 60
Query: 100 EAMSN-RPHEIDGRVVETKRAVPREVK 125
+A E G+ ++ A +
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHIG 87
Score = 29.0 bits (64), Expect = 0.24
Identities = 6/55 (10%), Positives = 12/55 (21%), Gaps = 10/55 (18%)
Query: 120 VPREVKVRRVTKVQIALEQMDYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYD 174
+V T+ + F Y + + I F +
Sbjct: 13 ANDDVFSESETRAKF----ESLFRTYDKDTTFQYFKS------FKRVRINFSNPL 57
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 37.9 bits (87), Expect = 2e-04
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA-- 101
+ + GL + L E++G I V++M + + E
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVT 69
Query: 102 -MSNRPHEIDGRVVETKRAVPREVK 125
++ P I G+ + + +
Sbjct: 70 FAADVPVYIAGQQAFFNYSTSKRIT 94
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 36.6 bits (84), Expect = 4e-04
Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 8/80 (10%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+ + L +N + + + +K R++ F+T + A+
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 104 N-RPHEIDGRVVETKRAVPR 122
+ G+ + +
Sbjct: 59 MFHQYSFRGKDLIVQLQPTD 78
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 36.2 bits (83), Expect = 6e-04
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
+L++GGL T+ +L F+++G I + +K F +I Y A +
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAACA 71
Query: 104 N-RPHEIDGR 112
R + G
Sbjct: 72 KMRGFPLGGP 81
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.5 bits (81), Expect = 0.001
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMS 103
L + + +++ LK F G VV ++ R I + +A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGG----VVKGFKFFQKDRKMALIQMGSVEEAVQALI 66
Query: 104 NRPHE--IDGRVVETKRAVPR 122
+ + + + +
Sbjct: 67 DLHNHDLGENHHLRVSFSKST 87
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.8 bits (79), Expect = 0.002
Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 44 RKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEA-- 101
R L I L + + A + + + + + + F+ + +
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATEEAAITMVN 62
Query: 102 -MSNRPHEIDGRVVETKRAVPREVK 125
S + + + + + +E+K
Sbjct: 63 YYSAVTPHLRNQPIYIQYSNHKELK 87
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 35.3 bits (81), Expect = 0.002
Identities = 7/72 (9%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 53 YRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNR-PHEIDG 111
+ L+ ++G+I +++ G +++ + + D + G
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGRWFGG 84
Query: 112 RVVETKRAVPRE 123
R + +
Sbjct: 85 RQITAQAWDGTT 96
Score = 29.1 bits (65), Expect = 0.18
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVDK 178
++G I + + G A + F D + D
Sbjct: 38 VECSKFGQIRKLLLFDRH----PDGVASVSFRDPEEADY 72
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 34.5 bits (78), Expect = 0.002
Identities = 10/85 (11%), Positives = 22/85 (25%), Gaps = 8/85 (9%)
Query: 45 KLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSN 104
++ + GL + LK + G G + + + + A+
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA-------GDVCYADVYRDGTGVVEFVRKEDMTYAVRK 54
Query: 105 -RPHEIDGRVVETKRAVPREVKVRR 128
+ ET + R
Sbjct: 55 LDNTKFRSHEGETAYIRVKVDGPRS 79
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 31.1 bits (69), Expect = 0.061
Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 35 SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE 94
S S S + L T ++ F ++G + V++ + + + E
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG------ITAIVEFLE 55
Query: 95 SKMVDEAMSN-RPHEIDGRVVETKRA 119
+A + + + + A
Sbjct: 56 PLEARKAFRHLAYSKFHHVPLYLEWA 81
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 29.8 bits (66), Expect = 0.081
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 35 SQCSEPESLRKLFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSE 94
+Q +P + + LF+ L TN+ L F Q+ +V ++ + F S
Sbjct: 1 AQTEQPPN-QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSN 59
Query: 95 SKMVDEAMSNRPHEIDGRVVETKRA 119
+ EA+ ++ A
Sbjct: 60 AAK--EALQGFKI-TPTHAMKITFA 81
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 26.0 bits (56), Expect = 1.9
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 46 LFIGGLDYRTNDDSLKAFFEQWGEIVDVVVMKDPVTKRSRGFGFITYSESKMVDEAMSNR 105
+ I GL + + + +K + +G F+T + + A++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 106 PH 107
Sbjct: 54 HQ 55
>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
{Burkholderia pseudomallei [TaxId: 28450]}
Length = 267
Score = 26.7 bits (59), Expect = 3.5
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 97 MVDEAMSNR-PHEIDGRVVETKRA 119
+DE S R P IDGR V+ +RA
Sbjct: 23 AIDEFASLRLPDRIDGRFVDGRRA 46
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 26.5 bits (58), Expect = 3.7
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 157 KETGAKRGFAFIEFDDYDVVDKIVLDKVVVLEV 189
++ G G + + Y ++K V VLE
Sbjct: 88 EKKGGGTGAQYEDGKQYTTLEKPVAGAPQVLEF 120
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp.
Thermophilus [TaxId: 271]}
Length = 387
Score = 25.7 bits (56), Expect = 6.9
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 140 DYFGQYGTIESVNMVTNKETGAKRGFAFIEFDDYDVVD 177
D FG E ++ V A+ G + D D++
Sbjct: 23 DPFGD-AVRERLDPVYVVHKLAELGAYGVNLHDEDLIP 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.392
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,120,658
Number of extensions: 52144
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 119
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)