BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14691
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
           Saccharomyces Cerevisiae
 pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
           Saccharomyces Cerevisiae
          Length = 408

 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 16/146 (10%)

Query: 185 ERDDYATLPRDARVPSSLGSATQDSLRSGV-----------ADNASSQSSAMMLPQSNPG 233
           + D Y +  +++ +  ++G A  +SL+  V            DN+  + S   L  SN  
Sbjct: 103 DDDPYVSGLQESYLDQAIGWARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSNLA 162

Query: 234 MSLNLPNSSLHPYTCDEATLHVVGVRM-GDYVGNRVLLAFTGHTQTGP-INYMKNEITND 291
           +++N+ N  L  Y+ +E    V+G+ +  + +G  + +    +    P   Y++N I +D
Sbjct: 163 VTINVLNYILKKYSAEEYLDIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSD 222

Query: 292 RQLVQCMISDGSCPPNGCPPWRCQQD 317
           + ++   I D   P N    +  + D
Sbjct: 223 QVII---IHDAFQPYNYWDDFMTEND 245


>pdb|1EO0|A Chain A, Conserved Domain Common To Transcription Factors Tfiis,
           Elongin A, Crsp70
          Length = 77

 Score = 28.9 bits (63), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 53  NKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELT 103
           NK   A +LE+    LH + K   PTE++ R    G  +NK +K+  +E++
Sbjct: 16  NKSNDAAVLEI----LHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEIS 62


>pdb|2CAZ|A Chain A, Escrt-I Core
 pdb|2CAZ|D Chain D, Escrt-I Core
          Length = 82

 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 19/91 (20%)

Query: 31  FSLHHPADEEMTKIITAEGENINKLEK--------ADILELTVRHLHRITKPHDPTEEVQ 82
            S  H  DE++  I  A+ + +N+L           D +E   R LHR T P D      
Sbjct: 1   MSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDT----- 55

Query: 83  RFQAEGENINKLEKADILELTVRHLHRITKP 113
            F  +G  + + +      L   H+ RIT P
Sbjct: 56  -FVKQGRELARQQF-----LVRWHIQRITSP 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,251,900
Number of Sequences: 62578
Number of extensions: 414919
Number of successful extensions: 1065
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 14
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)