Query psy14691
Match_columns 332
No_of_seqs 168 out of 484
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 18:11:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4304|consensus 100.0 2.1E-32 4.6E-37 255.2 5.2 114 51-167 30-152 (250)
2 PF07527 Hairy_orange: Hairy O 99.3 1.6E-12 3.5E-17 91.9 4.6 43 121-163 1-43 (43)
3 smart00511 ORANGE Orange domai 99.2 8.3E-12 1.8E-16 88.6 4.9 44 121-164 1-44 (45)
4 PF00010 HLH: Helix-loop-helix 98.3 9.7E-08 2.1E-12 69.3 -1.1 48 62-111 7-55 (55)
5 cd00083 HLH Helix-loop-helix d 98.2 1.4E-07 3E-12 68.3 -1.4 46 63-112 11-57 (60)
6 smart00353 HLH helix loop heli 98.2 1.9E-07 4.1E-12 66.6 -0.9 46 63-112 3-49 (53)
7 KOG4304|consensus 97.2 0.00011 2.4E-09 69.7 1.1 46 29-74 43-91 (250)
8 KOG3561|consensus 96.7 0.0005 1.1E-08 74.4 0.3 48 63-113 27-75 (803)
9 KOG1319|consensus 95.8 0.0065 1.4E-07 56.8 2.8 78 57-134 63-152 (229)
10 KOG1318|consensus 94.9 0.0043 9.3E-08 63.0 -1.6 49 62-113 239-288 (411)
11 KOG3560|consensus 94.7 0.0081 1.8E-07 63.2 -0.2 43 65-109 34-76 (712)
12 KOG3960|consensus 90.8 0.081 1.8E-06 51.3 0.4 52 56-112 119-170 (284)
13 KOG0561|consensus 83.9 0.38 8.2E-06 48.0 0.4 46 64-114 68-114 (373)
14 KOG2483|consensus 81.8 0.28 6.1E-06 46.7 -1.3 47 63-113 66-113 (232)
15 KOG2588|consensus 81.3 1.2 2.5E-05 49.9 3.0 45 64-114 284-329 (953)
16 KOG4029|consensus 80.3 0.44 9.5E-06 44.0 -0.6 48 62-112 115-163 (228)
17 KOG3558|consensus 39.7 12 0.00026 41.2 0.7 42 65-109 55-97 (768)
18 PF02182 SAD_SRA: SAD/SRA doma 25.8 9.1 0.0002 34.1 -2.5 47 254-303 6-55 (155)
19 PF00620 RhoGAP: RhoGAP domain 25.2 1.7E+02 0.0036 24.2 5.1 69 93-161 47-123 (151)
20 KOG4395|consensus 24.7 19 0.00041 35.5 -0.7 43 64-110 182-225 (285)
21 cd04393 RhoGAP_FAM13A1a RhoGAP 24.4 1.5E+02 0.0033 26.4 5.0 61 101-161 77-143 (189)
22 KOG1924|consensus 22.7 1.3E+03 0.027 27.0 12.5 21 26-46 413-433 (1102)
23 smart00466 SRA SET and RING fi 20.9 38 0.00083 30.5 0.4 49 254-305 7-59 (155)
24 PF12644 DUF3782: Protein of u 20.6 89 0.0019 23.2 2.3 17 118-134 46-62 (64)
No 1
>KOG4304|consensus
Probab=99.97 E-value=2.1e-32 Score=255.17 Aligned_cols=114 Identities=33% Similarity=0.573 Sum_probs=103.4
Q ss_pred cccccchhhHHHHHHHhhhccCCCCCCchh--hHHhhhcccccchhhhhhhHHHHHHHHhhccCCCCC-------hHHHH
Q psy14691 51 NINKLEKADILELTVRHLHRITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPHNP-------TEEVQ 121 (332)
Q Consensus 51 ~~~Kl~K~~ILEmEKRRRaRIN~sL~eLK~--le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~~p-------~~a~e 121 (332)
..+|..|+.| |||||||||+||+|||+ ++++++++.+++||||||||||||+|||++++.+.+ ....+
T Consensus 30 ~~rk~~Kpl~---EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~~~~~~d 106 (250)
T KOG4304|consen 30 QYRKVRKPLL---EKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAPAALPVD 106 (250)
T ss_pred HHhhhcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccccccccccccch
Confidence 4678888854 69999999999999999 689999988999999999999999999999876521 35789
Q ss_pred hHHHhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHhhhhcccCC
Q psy14691 122 RFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEAN 167 (332)
Q Consensus 122 ~FrsGF~eCa~EVsrFLss~pgvd~~l~~rLLsHL~~~l~~~~q~~ 167 (332)
+|++||++|+.||++||+.+|+++..++.+|++||+.+++++.+..
T Consensus 107 ~f~~Gf~ec~~EVsr~ls~~~~~~~~~~~~L~~HL~~~~~~~~~~~ 152 (250)
T KOG4304|consen 107 SFRAGFRECAAEVSRYLSICPGMDAAKGTRLLTHLQAHLAQLEQST 152 (250)
T ss_pred hhhccHHHHHHHHHHHHhhCCCCChHHHhHHHHHHHHHhhcccCcc
Confidence 9999999999999999999999999999999999999999999744
No 2
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=99.32 E-value=1.6e-12 Score=91.91 Aligned_cols=43 Identities=37% Similarity=0.714 Sum_probs=36.7
Q ss_pred HhHHHhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHhhhhc
Q psy14691 121 QRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQS 163 (332)
Q Consensus 121 e~FrsGF~eCa~EVsrFLss~pgvd~~l~~rLLsHL~~~l~~~ 163 (332)
++|++||++|++||++||++.+++++.++.+|++||+++++++
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~~~ 43 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLNQI 43 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999999999999999999998764
No 3
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=99.25 E-value=8.3e-12 Score=88.64 Aligned_cols=44 Identities=41% Similarity=0.770 Sum_probs=41.1
Q ss_pred HhHHHhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHhhhhcc
Q psy14691 121 QRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSL 164 (332)
Q Consensus 121 e~FrsGF~eCa~EVsrFLss~pgvd~~l~~rLLsHL~~~l~~~~ 164 (332)
++|++||++|+.||++||++.++++++++.+||+||+.+++++.
T Consensus 1 ~~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~~~ 44 (45)
T smart00511 1 SSFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQLL 44 (45)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999999999999999999999999988764
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=98.27 E-value=9.7e-08 Score=69.32 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhcc
Q psy14691 62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRIT 111 (332)
Q Consensus 62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq 111 (332)
+.|++||++||.++++|+. ++... .....|+.|++||+.|+.|++.||
T Consensus 7 ~~Er~RR~~i~~~~~~L~~llp~~~--~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 7 ERERRRRDRINDCFDELRELLPSCS--AGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSHH--CCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchh--ccccccCCHHHHHHHHHHHHHHhC
Confidence 3479999999999999999 44321 224589999999999999999875
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=98.22 E-value=1.4e-07 Score=68.27 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=39.1
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
.|++||++||.++++|+. ++... ...|+.|++||++||+|++.|+.
T Consensus 11 ~Er~RR~~~n~~~~~L~~llp~~~----~~~k~~k~~iL~~a~~yI~~L~~ 57 (60)
T cd00083 11 RERRRRERINDAFDELRSLLPTLP----PSKKLSKAEILRKAVDYIKSLQE 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 43322 34899999999999999999875
No 6
>smart00353 HLH helix loop helix domain.
Probab=98.20 E-value=1.9e-07 Score=66.62 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=38.9
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
.|++||++||.++++|+. ++... ...|+.|++||++|++|++.|+.
T Consensus 3 ~Er~RR~~~n~~~~~L~~lip~~~----~~~k~~k~~iL~~ai~yi~~L~~ 49 (53)
T smart00353 3 RERRRRRKINEAFDELRSLLPTLP----NNKKLSKAEILRLAIEYIKSLQE 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 43322 24899999999999999998875
No 7
>KOG4304|consensus
Probab=97.22 E-value=0.00011 Score=69.66 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=40.2
Q ss_pred ccccccCCC---hHHHHHHHHhhcccccccchhhHHHHHHHhhhccCCC
Q psy14691 29 VEFSLHHPA---DEEMTKIITAEGENINKLEKADILELTVRHLHRITKP 74 (332)
Q Consensus 29 ~~f~l~~~l---k~lm~~~l~~~~~~~~Kl~K~~ILEmEKRRRaRIN~s 74 (332)
.+-+||+|| |++|.+.++.++....||+|+|||||+++|.+.+++.
T Consensus 43 RRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~ 91 (250)
T KOG4304|consen 43 RRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS 91 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 455799998 6799999999988999999999999999999887653
No 8
>KOG3561|consensus
Probab=96.66 E-value=0.0005 Score=74.38 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=40.2
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP 113 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q 113 (332)
.|||||+.+|..|+||-. +.+... -..|++|--||+|||+|||.+...
T Consensus 27 ~EKrRRdq~N~yI~ELs~Mvp~~~~---~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 27 IEKRRRDQMNKYIEELSEMVPTNAS---LSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchh---cccCchHHHHHHHHHHHHHHHhhh
Confidence 379999999999999999 543221 358999999999999999988764
No 9
>KOG1319|consensus
Probab=95.81 E-value=0.0065 Score=56.78 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=58.3
Q ss_pred hhhHHHHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCCC-----------ChHHHHhHH
Q psy14691 57 KADILELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPHN-----------PTEEVQRFQ 124 (332)
Q Consensus 57 K~~ILEmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~~-----------p~~a~e~Fr 124 (332)
|+--+..|.+||+-||+--+.|+. ++.....-+.--||-||-||.-|++|+..|.+++. .+.+.+...
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk 142 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIK 142 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556789999999999999999 55544332333499999999999999999987641 135677788
Q ss_pred HhHHHHHHHH
Q psy14691 125 AGFTQCASEA 134 (332)
Q Consensus 125 sGF~eCa~EV 134 (332)
.||.+=++-+
T Consensus 143 ~~YEqM~~~~ 152 (229)
T KOG1319|consen 143 VNYEQMVKAH 152 (229)
T ss_pred HHHHHHHHhc
Confidence 8887655544
No 10
>KOG1318|consensus
Probab=94.89 E-value=0.0043 Score=62.98 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=39.7
Q ss_pred HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691 62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP 113 (332)
Q Consensus 62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q 113 (332)
|.|+|||+.||.-+.||.. ++... +...|++|.-||--+|+|++.+++.
T Consensus 239 eVERRRR~nIN~~IkeLg~liP~~~---~~~~~~nKgtILk~s~dYIr~Lqq~ 288 (411)
T KOG1318|consen 239 EVERRRRENINDRIKELGQLIPKCN---SEDMKSNKGTILKASCDYIRELQQT 288 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC---cchhhcccchhhHHHHHHHHHHHHH
Confidence 3479999999999999999 43222 2347999999999999999998863
No 11
>KOG3560|consensus
Probab=94.69 E-value=0.0081 Score=63.24 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=35.7
Q ss_pred HHhhhccCCCCCCchhhHHhhhcccccchhhhhhhHHHHHHHHhh
Q psy14691 65 VRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHR 109 (332)
Q Consensus 65 KRRRaRIN~sL~eLK~le~~~k~~s~~sKLEKADILEMTVkyLK~ 109 (332)
||||+|+|.-|+.|-+|--+..+ ..+||+|--||.++|.|||.
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqd--iisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQD--IISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHH--HHhhhhhhhhhhhhHHHHHH
Confidence 89999999888877774334443 68999999999999999985
No 12
>KOG3960|consensus
Probab=90.79 E-value=0.081 Score=51.33 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=38.0
Q ss_pred chhhHHHHHHHhhhccCCCCCCchhhHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 56 EKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 56 ~K~~ILEmEKRRRaRIN~sL~eLK~le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
+|+--+- ||||++++|+..+.||+=. -..-+-+|=|-|||.-+++|+..||.
T Consensus 119 RKAATMR-ERRRLkKVNEAFE~LKRrT----~~NPNQRLPKVEILRsAI~YIE~Lq~ 170 (284)
T KOG3960|consen 119 RKAATMR-ERRRLKKVNEAFETLKRRT----SSNPNQRLPKVEILRSAIRYIERLQA 170 (284)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhc----CCCccccccHHHHHHHHHHHHHHHHH
Confidence 4443333 6888899999988888811 11134688899999999999998763
No 13
>KOG0561|consensus
Probab=83.86 E-value=0.38 Score=48.03 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=37.3
Q ss_pred HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC
Q psy14691 64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH 114 (332)
Q Consensus 64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~ 114 (332)
|+||..-||.-...||. ++ +++| .||-||-||+.|-+|+-.|.+++
T Consensus 68 ERRRMQSINAGFqsLr~LlP--r~eG---EKLSKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 68 ERRRMQSINAGFQSLRALLP--RKEG---EKLSKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred HHHHHHhhhHHHHHHHHhcC--cccc---hhhHHHHHHHHHHHHHHHHHhcc
Confidence 47888889988888888 33 3443 69999999999999999987665
No 14
>KOG2483|consensus
Probab=81.81 E-value=0.28 Score=46.67 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=34.8
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP 113 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q 113 (332)
+||+|||-|..|++.||. ++....+ .+.. -+-||.-++.|++.++..
T Consensus 66 LEk~RRahlk~~~~~Lk~~vP~~~~~-~~~t---~lsiL~kA~~~i~~l~~~ 113 (232)
T KOG2483|consen 66 LEKRRRAHLKDCFESLKDSVPLLNGE-TRST---TLSILDKALEHIQSLERK 113 (232)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCc-chhh---hhHhhhhHHHHHHHHHhH
Confidence 459999999999999999 4433322 1111 678889999999988764
No 15
>KOG2588|consensus
Probab=81.34 E-value=1.2 Score=49.86 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=38.1
Q ss_pred HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC
Q psy14691 64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH 114 (332)
Q Consensus 64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~ 114 (332)
|||+|--||..+.|||+ +.- ...|+-|...|.-+.+|++.++...
T Consensus 284 EKRYRsSINDKI~eLk~lV~g------~~aKl~kSavLr~ai~~i~dl~~~n 329 (953)
T KOG2588|consen 284 EKRYRSSINDKIIELKDLVPG------TEAKLNKSAVLRKAIDYIEDLQGYN 329 (953)
T ss_pred HHHhhcchhHHHHHHHHhcCc------cHhhhhhhhhHHHHHHHHHHhhccc
Confidence 59999999999999999 321 2389999999999999999988653
No 16
>KOG4029|consensus
Probab=80.35 E-value=0.44 Score=44.03 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
+.|+.|-.-+|...++||. ++..-. ...||=|.|+|.++++|++.|+.
T Consensus 115 ~RER~Rv~~vN~~f~~Lr~~lP~~~~---~~kklSKveTLr~A~~YI~~L~~ 163 (228)
T KOG4029|consen 115 ARERQRVQSVNSAFAELRALLPTEPP---QSKKLSKVETLRLATSYIRYLTK 163 (228)
T ss_pred hhhhhcccchhhhhHHHHhcCCCCCC---cccccCcccchHHHHHHHHHHHH
Confidence 3467777889999999999 433222 14899999999999999998764
No 17
>KOG3558|consensus
Probab=39.67 E-value=12 Score=41.20 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhh
Q psy14691 65 VRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHR 109 (332)
Q Consensus 65 KRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~ 109 (332)
+-||-+=|.-..||+. |+ +.. ...+.|+||-|+.+|+.|||-
T Consensus 55 RsRRsKEn~~FyeLa~~lP-lp~--aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 55 RSRRSKENEEFYELAKLLP-LPA--AISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhcccchHHHHHHHHhCC-Ccc--hhhhhhhhHHHHHHHHHHHHH
Confidence 5566665655567777 33 222 234899999999999999994
No 18
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=25.79 E-value=9.1 Score=34.11 Aligned_cols=47 Identities=36% Similarity=0.523 Sum_probs=28.1
Q ss_pred EEeeeeccccccceEEEEeec---cccccccccccccccccchhheecccCCC
Q psy14691 254 HVVGVRMGDYVGNRVLLAFTG---HTQTGPINYMKNEITNDRQLVQCMISDGS 303 (332)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (332)
||-||..||..-+|+-+++.| ++|.| |.+++++-. .-.+-..+|.||
T Consensus 6 ~ipGv~vG~~f~~r~~~~~~G~H~~~~~G-I~g~~~~g~--~~A~SIV~Sg~y 55 (155)
T PF02182_consen 6 HIPGVEVGDWFPYRMELSIVGLHGPTQAG-IDGMKKEGG--PVAYSIVLSGGY 55 (155)
T ss_dssp --TT--TT-EESSHHHHHHTTSS--SS-S-EEEETTTES--EEEEEEEESSSS
T ss_pred CCCCccCccEEhHHHHHhHhccCCCccCC-eecccCCCc--eeeEEEEECCCc
Confidence 788999999999999887765 56666 999998754 112234455555
No 19
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=25.16 E-value=1.7e+02 Score=24.19 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=38.6
Q ss_pred hhhhhhhHHHHH---HHHhhccCCCCChHHHHhHHH-----hHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHhhh
Q psy14691 93 KLEKADILELTV---RHLHRITKPHNPTEEVQRFQA-----GFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRIS 161 (332)
Q Consensus 93 KLEKADILEMTV---kyLK~Lq~q~~p~~a~e~Frs-----GF~eCa~EVsrFLss~pgvd~~l~~rLLsHL~~~l~ 161 (332)
.++..|+...+- +||+.+...--+....+.|.+ -..+-...+...+...|.....+-..|+.||.....
T Consensus 47 ~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~ 123 (151)
T PF00620_consen 47 NLENYDVHDVASLLKRFLRELPEPLIPSELYDKFIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSD 123 (151)
T ss_dssp TGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHHHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred cccccChhhccccceeeeeccccchhhhhHHHHHhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhc
Confidence 566666666554 888888764433334555542 223334445555555555444566777777766544
No 20
>KOG4395|consensus
Probab=24.73 E-value=19 Score=35.51 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhc
Q psy14691 64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRI 110 (332)
Q Consensus 64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~L 110 (332)
|+||..-+|..++.|+. +... ....||-|=|-|.|+-.|+-.+
T Consensus 182 Errrm~gLN~AfD~Lr~v~p~~----~~d~~LSkyetLqmaq~yi~~l 225 (285)
T KOG4395|consen 182 ERRRMNGLNSAFDRLRLVVPDG----DSDKKLSKYETLQMAQGYILAL 225 (285)
T ss_pred HHHHhhhHHHHHHHHHHhcCCC----CccchhhhhhHHHHHHHHHhhh
Confidence 46777778877788877 3333 3458999999999998887654
No 21
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=24.35 E-value=1.5e+02 Score=26.36 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHHhhccCCCCChHHHHhHHHhHHHH------HHHHHhhhccCCCCChHHHHHHHHHHHHhhh
Q psy14691 101 ELTVRHLHRITKPHNPTEEVQRFQAGFTQC------ASEACGFLLSLPGLDTRVGKRLVEHLGKRIS 161 (332)
Q Consensus 101 EMTVkyLK~Lq~q~~p~~a~e~FrsGF~eC------a~EVsrFLss~pgvd~~l~~rLLsHL~~~l~ 161 (332)
.+--+||+.+...--+....+.|...|.++ +.++.+++..+|..+-.+-..|+.||+....
T Consensus 77 ~~lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~ 143 (189)
T cd04393 77 SLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVAS 143 (189)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 344568888776543444556666666554 4566777777776666777888888877654
No 22
>KOG1924|consensus
Probab=22.67 E-value=1.3e+03 Score=27.02 Aligned_cols=21 Identities=5% Similarity=0.115 Sum_probs=12.2
Q ss_pred ccCccccccCCChHHHHHHHH
Q psy14691 26 IQGVEFSLHHPADEEMTKIIT 46 (332)
Q Consensus 26 ~~g~~f~l~~~lk~lm~~~l~ 46 (332)
+-.-||.+-..|.-++.++|.
T Consensus 413 lirnDy~~rpqYykLIEecIS 433 (1102)
T KOG1924|consen 413 LIRNDYYIRPQYYKLIEECIS 433 (1102)
T ss_pred HHhhhhhhhHHHHHHHHHHHH
Confidence 334456555556566666664
No 23
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=20.89 E-value=38 Score=30.54 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=32.9
Q ss_pred EEeeeeccccccceEEEEeec---cccccccccccccccccchhheecc-cCCCCC
Q psy14691 254 HVVGVRMGDYVGNRVLLAFTG---HTQTGPINYMKNEITNDRQLVQCMI-SDGSCP 305 (332)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 305 (332)
||-||..||.+-.|+-|++.| ++| +-|.||+.+ +...++.+.+ |.||..
T Consensus 7 ~vpGv~vGd~f~~R~el~~~GlH~~~~-~GI~~~~~~--~~~~~A~SIV~SggYed 59 (155)
T smart00466 7 PVPGVEVGDIFFFRVELCLVGLHRPTQ-AGIDGLTAD--EGEPGATSVVSSGGYED 59 (155)
T ss_pred CCCCccCCCEEcchhHhhhhcccCccc-CCccccccc--CCCccEEEEEECCCccC
Confidence 567899999999997666555 444 459999866 4444555554 444543
No 24
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=20.57 E-value=89 Score=23.17 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.5
Q ss_pred HHHHhHHHhHHHHHHHH
Q psy14691 118 EEVQRFQAGFTQCASEA 134 (332)
Q Consensus 118 ~a~e~FrsGF~eCa~EV 134 (332)
.....|+.||+.|+..+
T Consensus 46 ~~e~afr~G~~d~l~~~ 62 (64)
T PF12644_consen 46 ESEEAFRQGFRDGLRLL 62 (64)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46889999999999764
Done!