Query psy14691
Match_columns 332
No_of_seqs 168 out of 484
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 18:11:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db7_A Hairy/enhancer-OF-split 99.2 1.2E-11 3.9E-16 94.4 5.0 50 115-164 11-63 (64)
2 4h10_A ARYL hydrocarbon recept 99.1 9.1E-12 3.1E-16 96.7 -0.5 48 62-112 15-63 (73)
3 1a0a_A BHLH, protein (phosphat 99.1 6.9E-12 2.4E-16 94.6 -1.2 52 63-114 9-61 (63)
4 4h10_B Circadian locomoter out 98.8 3.3E-10 1.1E-14 87.9 -1.6 44 63-112 15-59 (71)
5 1an4_A Protein (upstream stimu 98.6 1.1E-09 3.7E-14 81.8 -4.3 50 63-113 12-62 (65)
6 4f3l_A Mclock, circadian locom 98.2 7.2E-08 2.5E-12 90.3 -2.6 42 64-111 20-62 (361)
7 1am9_A Srebp-1A, protein (ster 98.1 2.6E-07 8.9E-12 72.3 -1.6 45 63-113 13-58 (82)
8 4ati_A MITF, microphthalmia-as 98.0 2.5E-07 8.7E-12 77.1 -2.2 47 63-112 34-81 (118)
9 4f3l_B BMAL1B; BHLH, PAS, circ 98.0 7.7E-07 2.6E-11 84.5 -0.3 48 63-113 20-68 (387)
10 1nkp_B MAX protein, MYC proto- 98.0 6.8E-07 2.3E-11 69.5 -1.2 45 63-112 9-54 (83)
11 1hlo_A Protein (transcription 97.9 9.1E-07 3.1E-11 68.5 -1.2 45 63-112 19-64 (80)
12 1nkp_A C-MYC, MYC proto-oncoge 97.4 1.6E-05 5.4E-10 63.2 -1.0 48 62-113 12-60 (88)
13 1nlw_A MAD protein, MAX dimeri 97.1 3.3E-05 1.1E-09 60.5 -2.3 47 62-112 7-54 (80)
14 2lfh_A DNA-binding protein inh 97.1 1.2E-05 4.2E-10 62.1 -4.8 45 64-112 22-67 (68)
15 3u5v_A Protein MAX, transcript 96.9 0.0001 3.6E-09 57.4 -0.6 47 64-113 13-60 (76)
16 2ql2_B Neurod1, neurogenic dif 96.8 6.1E-05 2.1E-09 56.2 -2.7 46 63-112 9-55 (60)
17 1mdy_A Protein (MYOD BHLH doma 96.4 0.00021 7.2E-09 54.6 -2.2 45 63-112 19-64 (68)
18 4aya_A DNA-binding protein inh 94.0 0.0037 1.3E-07 51.2 -2.4 60 64-128 33-95 (97)
19 4ath_A MITF, microphthalmia-as 88.9 0.018 6E-07 46.0 -3.7 44 68-114 4-48 (83)
20 2l3i_A Aoxki4A, antimicrobial 27.7 17 0.00058 23.7 0.6 7 309-315 4-11 (30)
No 1
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=99.20 E-value=1.2e-11 Score=94.37 Aligned_cols=50 Identities=30% Similarity=0.539 Sum_probs=43.8
Q ss_pred CChHHHHhHHH-hHHHHHHHHHhhhccCCCCChH--HHHHHHHHHHHhhhhcc
Q psy14691 115 NPTEEVQRFQA-GFTQCASEACGFLLSLPGLDTR--VGKRLVEHLGKRISQSL 164 (332)
Q Consensus 115 ~p~~a~e~Frs-GF~eCa~EVsrFLss~pgvd~~--l~~rLLsHL~~~l~~~~ 164 (332)
++.....+|++ ||++|++||+|||+++|++++. ++.|||+||+.++++++
T Consensus 11 d~~~~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~~e 63 (64)
T 2db7_A 11 DAHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQRE 63 (64)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHC-
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhccC
Confidence 34456789995 9999999999999999999976 99999999999998765
No 2
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.08 E-value=9.1e-12 Score=96.72 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=40.5
Q ss_pred HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
++||+||+|||.+|++|+. ++... + ..+|+|||+||++||+||+.++.
T Consensus 15 ~~ERrRR~rIN~~l~eL~~LvP~~~-~--~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 15 QIEKRRRDKMNSFIDELASLVPTCN-A--MSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHH-T--CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHccccc-c--ccccccHHHHHHHHHHHHHHHhc
Confidence 3579999999999999999 44333 2 34899999999999999999875
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.08 E-value=6.9e-12 Score=94.59 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=42.2
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH 114 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~ 114 (332)
+|++||+|||.++++|+. ++...+.....+|++||+||||||+|++.|+++.
T Consensus 9 aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 9 AEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp GTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999 4433333223589999999999999999998753
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.79 E-value=3.3e-10 Score=87.89 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=38.4
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
.||+||+|||.++.+|+. ++ . ..+|++||+||++||+||+.|+.
T Consensus 15 iErrRRd~IN~~i~eL~~LvP----~--~~~K~dK~sIL~~aI~yik~Lq~ 59 (71)
T 4h10_B 15 SEKKRRDQFNVLIKELGSMLP----G--NARKMDKSTVLQKSIDFLRKHKE 59 (71)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS----S--CCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHhCC----C--CCCCCcHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 43 1 34799999999999999999875
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.57 E-value=1.1e-09 Score=81.77 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=40.6
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP 113 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q 113 (332)
+|++||++||.++++|+. ++..... +...|++||+||++||+||+.|+++
T Consensus 12 ~Er~RR~~in~~~~~L~~lvP~~~~~-~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 12 VERRRRDKINNWIVQLSKIIPDSSME-STKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCC-SSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcccc-cccCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 4433322 1236999999999999999999865
No 6
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.21 E-value=7.2e-08 Score=90.26 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=37.3
Q ss_pred HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhcc
Q psy14691 64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRIT 111 (332)
Q Consensus 64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq 111 (332)
||+||+|||..+.+|+. ++ . ..+||+||.||++||.|||.++
T Consensus 20 e~~rr~~~n~~~~~l~~~~p----~--~~~~~dk~~il~~~~~~~~~~~ 62 (361)
T 4f3l_A 20 EKKRRDQFNVLIKELGSMLP----G--NARKMDKSTVLQKSIDFLRKHK 62 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTCC----S--SSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC----C--CCCCcCHHHHHHHHHHHHHHHH
Confidence 69999999999999999 44 2 3489999999999999999876
No 7
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.06 E-value=2.6e-07 Score=72.32 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP 113 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q 113 (332)
.|++||++||..+.+|+. ++. ...|+.||+||+.||+|++.|+.+
T Consensus 13 ~ErrRR~~in~~f~~L~~lvP~------~~~k~~Ka~IL~~Ai~YI~~Lq~~ 58 (82)
T 1am9_A 13 IEKRYRSSINDKIIELKDLVVG------TEAKLNKSAVLRKAIDYIRFLQHS 58 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC------CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 432 238999999999999999998863
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.04 E-value=2.5e-07 Score=77.07 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
.|++||++||..+.+|+. ++...+ ...|++||.||++||+||+.|++
T Consensus 34 ~ERrRR~~In~~~~~L~~lvP~~~~---~~~k~~Ka~IL~~aieYIk~Lq~ 81 (118)
T 4ati_A 34 IERRRRFNINDRIKELGTLIPKSND---PDMRWNKGTILKASVDYIRKLQR 81 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC---ccccCCHHHHHHHHHHHHHHHHH
Confidence 369999999999999999 443332 13799999999999999999875
No 9
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.99 E-value=7.7e-07 Score=84.50 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=40.4
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP 113 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q 113 (332)
.|||||+|||..+.+|+. ++... + ..+||+||.||++||.|||.++..
T Consensus 20 ~ek~rR~~~n~~~~~L~~l~p~~~-~--~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 20 IEKRRRDKMNSFIDELASLVPTCN-A--MSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHH-H--CSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcchHHHHHHHHHHHHhcCCCC-c--cccccCHHHHHHHHHHHHHHhhcc
Confidence 479999999999999999 44432 2 358999999999999999998754
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=97.95 E-value=6.8e-07 Score=69.47 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=39.0
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
.|++||++||.++++|+. ++.+. ..|+.||+||.+||.|++.|+.
T Consensus 9 ~Er~RR~~in~~f~~Lr~lvP~~~-----~~k~sK~~iL~~Ai~YI~~L~~ 54 (83)
T 1nkp_B 9 LERKRRDHIKDSFHSLRDSVPSLQ-----GEKASRAQILDKATEYIQYMRR 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTSGGGT-----TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 54332 3799999999999999999886
No 11
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.91 E-value=9.1e-07 Score=68.53 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=38.8
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
.|++||..||.++++|+. ++.+. ..|+.|++||.+||.|++.|+.
T Consensus 19 ~Er~RR~~in~~f~~Lr~lvP~~~-----~~k~sK~~iL~~Ai~YI~~L~~ 64 (80)
T 1hlo_A 19 LERKRRDHIKDSFHSLRDSVPSLQ-----GEKASRAQILDKATEYIQYMRR 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGT-----TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCC-----CCCccHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 54333 2699999999999999999875
No 12
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.39 E-value=1.6e-05 Score=63.16 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=40.5
Q ss_pred HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691 62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP 113 (332)
Q Consensus 62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q 113 (332)
++|++||+.||.+++.|+. ++.+.. ..|+-|+.||..|+.|++.|+..
T Consensus 12 ~~ER~RR~~ln~~f~~Lr~~vP~~~~----~~K~sK~~iL~~A~~YI~~L~~~ 60 (88)
T 1nkp_A 12 VLERQRRNELKRSFFALRDQIPELEN----NEKAPKVVILKKATAYILSVQAE 60 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGTT----CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999 554432 37999999999999999998864
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=97.07 E-value=3.3e-05 Score=60.53 Aligned_cols=47 Identities=9% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
++|++||+.||.|++.|+. ++.+. ...|+-|++||..++.|++.|+.
T Consensus 7 ~~ER~RR~~lk~~f~~Lr~~vP~~~----~~~k~sk~~iL~kA~~yI~~L~~ 54 (80)
T 1nlw_A 7 EMEKNRRAHLRLSLEKLKGLVPLGP----DSSRHTTLSLLTKAKLHIKKLED 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCS----SSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC----CCCCCCHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999 54332 23788899999999999999876
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.06 E-value=1.2e-05 Score=62.14 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=38.1
Q ss_pred HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
|++|++.||.+++.||. ++.+.. ..||-|.|||.+++.|++.||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p~----~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVPR----GTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCCT----TCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC----CCCccHHHHHHHHHHHHHHHHc
Confidence 58888999999999999 554432 3799999999999999999875
No 15
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=96.92 E-value=0.0001 Score=57.36 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=36.6
Q ss_pred HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691 64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP 113 (332)
Q Consensus 64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q 113 (332)
|++||..||.++++|+. ++..... . .++-|.+||..||+|++.|+++
T Consensus 13 ER~Rr~~IN~~f~~Lr~~vP~~~~~-~--K~~sK~~IL~~AieYI~~Lq~~ 60 (76)
T 3u5v_A 13 ERKRRRDINEAFRELGRMCQMHLKS-D--KAQTKLLILQQAVQVILGLEQQ 60 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-C--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHcCCCCCc-c--ccccHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999 5532211 1 2336899999999999998753
No 16
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=96.81 E-value=6.1e-05 Score=56.23 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
-|++|+..||..++.|+. ++... ...||-|.|||.+++.|++.|+.
T Consensus 9 rER~R~~~iN~af~~LR~~lP~~~----~~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 9 RERNRMHGLNAALDNLRKVVPCYS----KTQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCC----SSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCC----CcCcCCHHHHHHHHHHHHHHHHH
Confidence 369999999999999999 54432 23799999999999999998864
No 17
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=96.40 E-value=0.00021 Score=54.63 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=37.9
Q ss_pred HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691 63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK 112 (332)
Q Consensus 63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~ 112 (332)
.|++|+..||..++.|+. ++.. + ..||-|.+||.++++|++.|+.
T Consensus 19 rER~R~~~iN~af~~LR~~iP~~---~--~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 19 RERRRLSKVNEAFETLKRSTSSN---P--NQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSC---T--TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC---C--CCCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5432 1 3699999999999999998874
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=94.02 E-value=0.0037 Score=51.15 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=39.3
Q ss_pred HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC--CChHHHHhHHHhHH
Q psy14691 64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH--NPTEEVQRFQAGFT 128 (332)
Q Consensus 64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~--~p~~a~e~FrsGF~ 128 (332)
|+.|...+|..++.||. ++.+. ...||-|-|||.+++.|++.|+..- .+. ....|.+||.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p----~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~-~~~~~~~g~~ 95 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIP----QNKKVSKMEILQHVIDYILDLQIALDSHLK-PSFLVQSGDI 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSC----SSSCCCHHHHHHHHHHHHHHHHHHHHTTTS-TTCC------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC----CCCcccHHHHHHHHHHHHHHHHHHHhcCCC-CcchhhcCcc
Confidence 36777889999999999 55443 2379999999999999999987421 111 2334777775
No 19
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=88.94 E-value=0.018 Score=46.04 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=33.6
Q ss_pred hhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC
Q psy14691 68 LHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH 114 (332)
Q Consensus 68 RaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~ 114 (332)
|..||..+.+|.. ++.. .+ ...|..|+-||..||+|++.|++..
T Consensus 4 R~nIN~~I~EL~~LiP~~-~~--~~~k~nKg~IL~ksvdYI~~Lq~e~ 48 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKS-ND--PDMRWNKGTILKASVDYIRKLQREQ 48 (83)
T ss_dssp HHHHHHHHHHHHHHSCCC-CC--TTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred hhhHHHhhhhhhccCCCC-CC--cccCcchHHHHHHHHHHHHHHHHHH
Confidence 6678888888888 3222 12 3489999999999999999998743
No 20
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=27.73 E-value=17 Score=23.69 Aligned_cols=7 Identities=57% Similarity=2.347 Sum_probs=5.3
Q ss_pred CC-CCccc
Q psy14691 309 CP-PWRCQ 315 (332)
Q Consensus 309 ~~-~~~~~ 315 (332)
|| +|+|.
T Consensus 4 cpkswkck 11 (30)
T 2l3i_A 4 CPKSWKCK 11 (30)
T ss_dssp SSSCSCCC
T ss_pred CCcchhHH
Confidence 55 79995
Done!