RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14691
(332 letters)
>gnl|CDD|219453 pfam07527, Hairy_orange, Hairy Orange. The Orange domain is found
in the Drosophila proteins Hesr-1, Hairy, and Enhancer
of Split. The Orange domain is proposed to mediate
specific protein-protein interaction between Hairy and
Scute.
Length = 42
Score = 47.2 bits (113), Expect = 1e-07
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 122 RFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQ 162
+F+AGF +C +E FL S+ G+D V RL+ HL ++Q
Sbjct: 1 KFRAGFRECLNEVARFLSSVEGVDPDVRARLLSHLASCLNQ 41
>gnl|CDD|128787 smart00511, ORANGE, Orange domain. This domain confers specificity
among members of the Hairy/E(SPL) family.
Length = 45
Score = 46.4 bits (111), Expect = 2e-07
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 121 QRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSL 164
F++G+ +CA+E FL LPG D V RL+ HL ++Q L
Sbjct: 1 SSFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQLL 44
>gnl|CDD|212139 cd11532, NTP-PPase_COG4997, Nucleoside Triphosphate
Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found
in a group of uncharacterized proteins from archaea and
bacteria. The family includes some uncharacterized
hypothetical proteins from archaea and bacteria.
Although their biological roles remain unclear, the
family members show significant sequence similarity to
the dimeric 2-deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTP pyrophosphatase or dUTPase)
and NTP-PPase MazG proteins. However, unlike typical
tandem-domain MazG proteins, the family contains a
single MazG-like domain.
Length = 95
Score = 31.4 bits (72), Expect = 0.17
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 23/97 (23%)
Query: 44 IITAEGEN--INKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILE 101
II A G+ L + LE L + EE + + E AD+LE
Sbjct: 12 IIRASGKTCVTRILSDEEYLEA----LKKKL-----VEEAAEYAEAKTEDSLEELADLLE 62
Query: 102 LTVRHLHRITKPHNPT-EEVQRFQA-------GFTQC 130
+ ++ I + H + EE+++ + GF +
Sbjct: 63 V----IYAIAEAHGISLEELEKVREKKREERGGFEKR 95
>gnl|CDD|179034 PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.
Length = 108
Score = 30.2 bits (69), Expect = 0.45
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 39 EEMTKIITAEGENINKLEKADILELTVRHL-HRITKPHDPTEEVQRFQAEGENINKLEKA 97
E +IT G I+K+E + R L + I K + F+A I +LE+
Sbjct: 24 ERFKGVITENGGTIHKVE-----DWGRRRLAYPINKLRKGHYVLLNFEAPPAAIAELERL 78
Query: 98 -----DIL-ELTVRHLHRITKP 113
D+L LTV+ +P
Sbjct: 79 FRINEDVLRFLTVKVEEAEEEP 100
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA-
binding proteins that act as transcription factors;
60-100 amino acids long. A DNA-binding basic region is
followed by two alpha-helices separated by a variable
loop region; HLH forms homo- and heterodimers,
dimerization creates a parallel, left-handed, four
helix bundle; the basic region N-terminal to the first
amphipathic helix mediates high-affinity DNA-binding;
there are several groups of HLH proteins: those
(E12/E47) which bind specific hexanucleotide sequences
such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3),
those lacking the basic domain (Emc, Id) function as
negative regulators since they fail to bind DNA, those
(hairy, E(spl), deadpan) which repress transcription
although they can bind specific hexanucleotide
sequences such as N-box (5-CACGc/aG-3), those which
have a COE domain (Collier/Olf-1/EBF) which is involved
in both in dimerization and in DNA binding, and those
which bind pentanucleotides ACGTG or GCGTG and have a
PAS domain which allows the dimerization between PAS
proteins, the binding of small molecules (e.g.,
dioxin), and interactions with non-PAS proteins.
Length = 60
Score = 29.1 bits (66), Expect = 0.47
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 51 NINKLEKADILELTVRHLH 69
KL KA+IL V ++
Sbjct: 35 PSKKLSKAEILRKAVDYIK 53
Score = 29.1 bits (66), Expect = 0.47
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 90 NINKLEKADILELTVRHLH 108
KL KA+IL V ++
Sbjct: 35 PSKKLSKAEILRKAVDYIK 53
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain.
Length = 52
Score = 28.6 bits (65), Expect = 0.52
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 54 KLEKADILELTVRHLH 69
KL KA+IL L + ++
Sbjct: 34 KLSKAEILRLAIEYIK 49
Score = 28.6 bits (65), Expect = 0.52
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 93 KLEKADILELTVRHLH 108
KL KA+IL L + ++
Sbjct: 34 KLSKAEILRLAIEYIK 49
>gnl|CDD|182277 PRK10161, PRK10161, transcriptional regulator PhoB; Provisional.
Length = 229
Score = 30.5 bits (68), Expect = 1.1
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 28 GVEFSLHHPADEEMTK-----IITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQ 82
G++F + H E MT+ ++TA GE E+ + L ITKP P E V
Sbjct: 61 GIQF-IKHLKRESMTRDIPVVMLTARGE-----EEDRVRGLETGADDYITKPFSPKELVA 114
Query: 83 RFQAEGENINKLEKADILELTVRHL----HRITKPHNPTE 118
R +A I+ + +++E+ L HR+ P E
Sbjct: 115 RIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLE 154
>gnl|CDD|216388 pfam01250, Ribosomal_S6, Ribosomal protein S6.
Length = 92
Score = 28.6 bits (65), Expect = 1.4
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 39 EEMTKIITAEGENINKLEKADILELTVRHL-HRITKPHDPTEEVQRFQAEGENINKLEKA 97
E+ K+I G + K+E + R L + I K + + F+AE E I +LE+
Sbjct: 23 EKYKKLIEENGGEVVKVE-----DWGKRKLAYPIKKKREGYYVLINFEAEPEAIAELERR 77
Query: 98 -----DIL-ELTVR 105
D+L LTV+
Sbjct: 78 LRINEDVLRFLTVK 91
>gnl|CDD|181467 PRK08559, nusG, transcription antitermination protein NusG;
Validated.
Length = 153
Score = 28.3 bits (64), Expect = 3.4
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 37 ADEEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEK 96
A E+ + E E+ +E+A + H+ + EEV+ F + +++
Sbjct: 41 APPELKGYVLVEAESKGAVEEAI---RGIPHVRGVVPGEISFEEVEHFLKPKPIVEGIKE 97
Query: 97 ADILELT 103
DI+EL
Sbjct: 98 GDIVELI 104
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain.
Length = 53
Score = 26.4 bits (59), Expect = 3.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 51 NINKLEKADILELTVRHLHRITK 73
KL KA+IL L + ++ + +
Sbjct: 27 KNKKLSKAEILRLAIEYIKSLQE 49
Score = 26.4 bits (59), Expect = 3.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 90 NINKLEKADILELTVRHLHRITK 112
KL KA+IL L + ++ + +
Sbjct: 27 KNKKLSKAEILRLAIEYIKSLQE 49
>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 29.0 bits (66), Expect = 3.9
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
Query: 37 ADEEMTKIITAEGENINKLEK-ADILELTVRHLHRITKP--HDPTEEVQRFQAEGENINK 93
+EE+ + + KL D E+ + + H PT ++ EG++
Sbjct: 356 REEELERAL-------KKLGPGEDEEEVLEKLARSLVNKLLHAPTVRLKEAAEEGDD--- 405
Query: 94 LEKADILE 101
E + L
Sbjct: 406 -EYLEALR 412
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen
specific [Signal transduction mechanisms].
Length = 363
Score = 28.9 bits (65), Expect = 4.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 27 QGVEFSLHHPADEEMTKIITAEGENINKL 55
Q +E +L A E+T++I E + + L
Sbjct: 155 QLLERALPDEALRELTQLIIEEADRLRNL 183
>gnl|CDD|129499 TIGR00405, L26e_arch, ribosomal protein L24p/L26e, archaeal. This
protein contains a KOW domain, shared by bacterial NusG
and the L24p/L26e family of ribosomal proteins. Although
called archaeal NusG in several publications, it is the
only close homolog of eukaryotic L26e in archaeal
genomes, shares an operon with L11 in many genomes, and
has been sequenced from purified ribosomes. It is here
designated as a ribosomal protein for these reasons
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 145
Score = 27.9 bits (62), Expect = 4.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 37 ADEEMTKIITAEGENINKLEKADILELTVR--HLHRITKPHDPTEEVQRFQAEGENINKL 94
A E + I E E K D+ + H+ + + EE++RF + I +
Sbjct: 33 APESLKGYILVEAET-----KIDMRNPIIGVPHVRGVVEGEIDFEEIERFLTPKKIIESI 87
Query: 95 EKADILEL 102
+K DI+E+
Sbjct: 88 KKGDIVEI 95
>gnl|CDD|179752 PRK04151, PRK04151, IMP cyclohydrolase; Provisional.
Length = 197
Score = 27.6 bits (62), Expect = 6.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 184 YERDDYATLPRDARVPSS----LGSATQDSLR 211
YE+DDY T PR A V +G +D+LR
Sbjct: 102 YEKDDYNT-PRIAGVVGKDEAYIGIVRKDALR 132
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 27.6 bits (61), Expect = 9.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 38 DEEMTKIITAEGENINKLEKADILE------LTVRHLHRITKPHDPTEEVQRFQAEGENI 91
+ E+ K T NI+ ++ D E +R L RI + + EE++R +AE E +
Sbjct: 89 ELELKKRNTLLEANIDDVDTDDENEEEEYEAWKLRELKRIKRDREEREEMEREKAEIEKM 148
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 27.8 bits (61), Expect = 9.7
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 179 SPAGGYERDDYATLPRDARVPSSLGSATQDSLRSGVADNASSQSSAMMLPQSNPGMSLNL 238
S GG D ++ G + + S + N +++ S LP N ++N
Sbjct: 820 SIDGGRSIDGGRSIDGGEGGDERDGGTCKSNRVSNIYFNDNARRSVSALPHMN---AINA 876
Query: 239 PNSSLHPYTCDEATLHVVGVRM 260
+S++ TCDE TL G +
Sbjct: 877 KKASIYNNTCDEGTLSKKGGEV 898
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,261,159
Number of extensions: 1512170
Number of successful extensions: 1393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1388
Number of HSP's successfully gapped: 21
Length of query: 332
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 235
Effective length of database: 6,635,264
Effective search space: 1559287040
Effective search space used: 1559287040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)