RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14691
(332 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 7e-07
Identities = 64/358 (17%), Positives = 107/358 (29%), Gaps = 127/358 (35%)
Query: 17 TSVFCDAQNIQGVEF--SLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRITKP 74
T+ F A +Q +F L P + A + E EL + L ++
Sbjct: 24 TASFFIASQLQE-QFNKILPEPTEG------FAADD-----EPTTPAELVGKFLGYVSSL 71
Query: 75 HDPTEEVQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEA 134
+P++ Q +L L + F+ + + ++
Sbjct: 72 VEPSKVGQF-------------DQVLNLCLTE----------------FENCYLE-GNDI 101
Query: 135 CGFLLSLPG-LDTRVGKR--LVE------HLGKRISQSLEANPALL--LSNGES-----F 178
L DT + K L++ + KR ++N AL + G + F
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 179 SPAGG------Y--E-RD---DYATLPRD-----ARVPSSLGSATQDS---LRSGVA--- 215
GG Y E RD Y L D A S L T D+ G+
Sbjct: 161 ---GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 216 --DNASSQSSAMML---PQSNPGMSLNLPNSSLHPYTCDEATLHVVGVRMGDYVGNRVLL 270
+N S+ L P S P + + L Y T ++G G+ L
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGV----IQLAHY---VVTAKLLGFTPGEL--RSYLK 268
Query: 271 AFTGHTQ------------TGPINYMKNEITNDRQLVQCMISDGSCPPNGCPPWRCQQ 316
TGH+Q + + + R+ + + G RC +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWE-----SFFVSVRKAITVLFFIG---------VRCYE 312
Score = 32.3 bits (73), Expect = 0.26
Identities = 31/183 (16%), Positives = 47/183 (25%), Gaps = 72/183 (39%)
Query: 147 RVGKRLVEHLGKRISQSLEANPALLLSNGESFSPAGGYE-RDDYATL----PRDARV--- 198
R + G I + NP L + F G R++Y+ + D ++
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIH---FGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 199 -----------------PSSLGSATQDSLRSGVADNASSQSSAMMLPQSNPGMSL----- 236
L SATQ Q A+ L M
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQ---------FT--Q-PALTL------MEKAAFED 1746
Query: 237 -----NLPNSSL---HP---YT---CD------EATLHVVGVRMGDYVGNRVLLAFTGHT 276
+P + H Y E+ + VV R G + V G +
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRS 1805
Query: 277 QTG 279
G
Sbjct: 1806 NYG 1808
Score = 31.2 bits (70), Expect = 0.67
Identities = 41/230 (17%), Positives = 67/230 (29%), Gaps = 82/230 (35%)
Query: 102 LTVRHLHRITKPHNPTEEVQRFQAGFTQCASEA----------------CGFLLSLPGLD 145
L++ +L + E+VQ + G SL GL+
Sbjct: 339 LSISNLTQ--------EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 146 TRVGKRLVEHLGKRISQSLEANPALLLSNGESFS---PAGGYERDDYATLPRDARVP--S 200
+ K G S+ P FS + LP + P S
Sbjct: 391 LTLRKAKAPS-GLDQSRI----P---------FSERKLKFSNR---F--LPVAS--PFHS 429
Query: 201 S-LGSATQDSLRSGVADNASSQSSAMMLPQSNP--GMSLNLPNSSLHPYTCD-------- 249
L A+ + V +N S + + +P + G L + + S+ D
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 250 -EATL-----HVV-----GV-RMGDYV-------GNRVLLAFTGHTQTGP 280
E T H++ G +G G RV++A G P
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA--GTLDINP 537
Score = 30.0 bits (67), Expect = 1.2
Identities = 33/177 (18%), Positives = 53/177 (29%), Gaps = 44/177 (24%)
Query: 14 AMGTSVFCDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRITK 73
AM D + F +E T T E +L T + T+
Sbjct: 1690 AMIFETIVDGKLKTEKIFK---EINEHSTSY-TFRSEK-------GLLSAT-----QFTQ 1733
Query: 74 PHDPTEEV---QRFQAEGENINK--------L-E------KADILEL--TVRHLH-R-IT 111
P E + +++G I L E AD++ + V + R +T
Sbjct: 1734 PALTLMEKAAFEDLKSKG-LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 112 KPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLE-AN 167
V R + G + A + +VE +GKR +E N
Sbjct: 1793 M----QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Score = 29.6 bits (66), Expect = 1.8
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 22/77 (28%)
Query: 221 QSSAMMLPQSNPGMSLNLPNSSLHPY------TCDEATLHVVGVRMGDYVGN---RVLLA 271
Q S Q GM ++L +S D G + D V N + +
Sbjct: 1624 QGS-----QE-QGMGMDLYKTS--KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 272 FTGHTQTG-PI--NYMK 285
F G + G I NY
Sbjct: 1676 FGG--EKGKRIRENYSA 1690
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 43/267 (16%), Positives = 74/267 (27%), Gaps = 76/267 (28%)
Query: 53 NKLEKADILELTVRHLHRITKP---------------HDPTEEVQRFQAEGENINKL--- 94
N +LE+ + L++I H E++R N L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 95 ---EKADILE---------LTVR------------HLHRITKPHNPT---EEVQRFQAGF 127
+ A LT R H H+ T +EV+ +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 128 TQCA-----SEACG---FLLSLPGLDTRVG--------KRLVEHLGKRISQSLEA-NPAL 170
C E LS+ R G + L I SL PA
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 171 LLSNGESFSPAGGYERDDYATLPRDARVPSS-LGSATQDSLRSGVADNASSQSSAMMLPQ 229
++ + P A +P+ L D ++S V + ++ +
Sbjct: 371 YRKM---------FD--RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 230 SNPGMSLNLPN--SSLHPYTCDEATLH 254
++++P+ L +E LH
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALH 446
Score = 40.6 bits (94), Expect = 7e-04
Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 88/299 (29%)
Query: 34 HHPADEEMT-------KIITAEGENINK-LEKADILELT--------VRHLHRITKPHD- 76
HH D E I++ + + D+ ++ + H+ I
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAV 61
Query: 77 -------------PTEEVQRFQAEGENIN--------KLEKADILELTVRHLHRITKPHN 115
E VQ+F E IN K E+ +T ++ + + +N
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 116 -----PTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEH----LGKRISQSLEA 166
V R Q + + +A LL L R K ++ GK + A
Sbjct: 122 DNQVFAKYNVSRLQP-YLK-LRQA---LLEL-----RPAKNVLIDGVLGSGK---TWV-A 167
Query: 167 NPALLLSNGESFSPAGGYERDDYATLPRDARVPSSLGSATQDSLRSGVADNASSQSSAMM 226
L + + + L + L L + N +S+S
Sbjct: 168 LDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHS- 220
Query: 227 LPQSNPGMSLNLPNSSL------HPYTCDEATLHVVGVRMGDYVGN-RVLLAFTGHTQT 278
SN + ++ + L PY E L V+ V N + AF +
Sbjct: 221 ---SNIKLRIHSIQAELRRLLKSKPY---ENCLLVL-----LNVQNAKAWNAFNLSCKI 268
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural
genomics, unknown function, DNA binding protein, NPPSFA;
1.90A {Homo sapiens} SCOP: a.273.1.1
Length = 64
Score = 30.4 bits (68), Expect = 0.12
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 124 QAGFTQCASEACGFLLSLPGLDTR--VGKRLVEHLGKRISQ 162
GF +C +E +L + GLD + RLV HL SQ
Sbjct: 21 SLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.6
Identities = 4/24 (16%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 221 QS-----SAMML--PQSNPGMSLN 237
Q+ +++ L S P +++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK 43
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription
regulation, repressor, activator, DNA-binding; 2.60A
{Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Length = 178
Score = 28.7 bits (64), Expect = 2.1
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 110 ITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRV---GKRLVEHLGKRISQSLE 165
I K ++P E+ F + ++ G + + D + G ++L K IS+ LE
Sbjct: 45 ILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLE 103
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 28.8 bits (64), Expect = 2.6
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 39 EEMTKIITAEGENINKLEKADILELTVRHLH 69
+E+ ++ KL+K +L + V+H+
Sbjct: 33 DELASLVPTCNAMSRKLDKLTVLRMAVQHMK 63
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Length = 96
Score = 27.0 bits (60), Expect = 3.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 21 CDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILE 62
++GV S+ E M +I EG ++N + +LE
Sbjct: 28 SKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLE 69
>2raq_A Conserved protein MTH889; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 3.11A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: d.58.61.1
Length = 97
Score = 26.6 bits (59), Expect = 4.1
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 21 CDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILE 62
+ + ++GV +L E +T +G +++ E +E
Sbjct: 29 SELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE 70
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC,
structural genom protein structure initiative; 2.80A
{Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Length = 100
Score = 26.6 bits (59), Expect = 4.4
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 21 CDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILE 62
+ +N+ GV L IT G N++ + ++E
Sbjct: 29 SELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIE 70
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 26.9 bits (60), Expect = 4.6
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 39 EEMTKIITAEGENINKLEKADILELTVRHL-HRITKPHDPTEEVQRFQAEGENINKLEKA 97
E T IT I++LE + R L + I K H + +A E I++LE
Sbjct: 23 ERYTAAITGAEGKIHRLE-----DWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETT 77
Query: 98 -----DIL-ELTVRHLHRITKP 113
++ + +R H +T+
Sbjct: 78 FRFNDAVIRSMVMRTKHAVTEA 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,958,160
Number of extensions: 290414
Number of successful extensions: 720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 21
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)