RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14691
(332 letters)
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with
YRPW motif protein 1; HESR-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 55
Score = 33.6 bits (77), Expect = 0.002
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 116 PTEEVQRFQA-GFTQCASEACGFLLSLPGLDTR--VGKRLVEHLGKRISQ 162
+++ GF +C +E +L + GLD + RLV HL SQ
Sbjct: 5 AHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 54
>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 32.8 bits (75), Expect = 0.010
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 39 EEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKA- 97
E T IT I++LE +L + I K H + +A E I++LE
Sbjct: 23 ERYTAAITGAEGKIHRLEDWGRRQLA----YPINKLHKAHYVLMNVEAPQEVIDELETTF 78
Query: 98 ----DILE-LTVRHLHRITKP 113
++ + +R H +T+
Sbjct: 79 RFNDAVIRSMVMRTKHAVTEA 99
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 30.3 bits (68), Expect = 0.29
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 23 AQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPT-EEV 81
AQN+ S P E I+ + + +++ ++ + P E++
Sbjct: 12 AQNLSIFLGSFRMPYQEIKNVILEVNEAVLTE----SMIQNLIKQM--------PEPEQL 59
Query: 82 QRFQAEGENINKLEKADILELTVRHLHRI 110
+ E + L +++ + + + R+
Sbjct: 60 KMLSELKEEYDDLAESEQFGVVMGTVPRL 88
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus
[TaxId: 10497]}
Length = 174
Score = 28.8 bits (64), Expect = 0.54
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 149 GKRLVEHLGKRISQSLEANPALLLSNGESFSPAGGYER 186
GK++V HL R+ + E N L+ ++ G R
Sbjct: 7 GKKIVNHLRSRL--AFEYNGQLIKILSKNIVAVGSLRR 42
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter
calcoaceticus [TaxId: 471]}
Length = 309
Score = 29.2 bits (65), Expect = 0.63
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 78 TEEVQRFQAEGENINKLEKAD-----ILELTVRHLHRITKPHNPTEE 119
T++VQ F + + E + I+ + L++ + N T +
Sbjct: 6 TQDVQDFLRVASGLEQ-EGGNPRVKQIIHRVLSDLYKAIEDLNITSD 51
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 91
Score = 27.3 bits (61), Expect = 0.87
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 21 CDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILE 62
+ +N+ GV L IT G N++ + ++E
Sbjct: 27 SELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIE 68
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 26.8 bits (59), Expect = 1.2
Identities = 6/59 (10%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 39 EEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKA 97
+++ ++ KL K+ +L + ++ + Q+ + E ++
Sbjct: 23 DKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQH------SNQKLKQENLSLRTAVHK 75
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 93
Score = 27.0 bits (60), Expect = 1.2
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 21 CDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILE 62
+ + ++GV +L E +T +G +++ E +E
Sbjct: 27 SELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE 68
>d1pprm1 a.131.1.1 (M:1-156) Peridinin-chlorophyll protein
{Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
Length = 156
Score = 27.2 bits (60), Expect = 1.7
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 158 KRISQSLEANPALLLSNGESFS--------PAGGYERDDYATLPRD-ARVPSSLGSATQD 208
K I A+P LL + E+ P G R D+ + RV +S+
Sbjct: 46 KMIVMGAAADPKLLKAAAEAHHKAIGSISGPNGVTSRADWDNVNAALGRVIASVPENMVM 105
Query: 209 SLRSGVADNASSQSSAMMLPQSNP 232
+ V+ + A M N
Sbjct: 106 DVYDSVSKITDPKVPAYMKSLVNG 129
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 25.1 bits (55), Expect = 3.1
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 54 KLEKADILELTVRHLH 69
K IL ++
Sbjct: 42 GQSKGGILSKASDYIQ 57
Score = 25.1 bits (55), Expect = 3.1
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 93 KLEKADILELTVRHLH 108
K IL ++
Sbjct: 42 GQSKGGILSKASDYIQ 57
>d1pgsa1 b.121.1.1 (A:4-140) Peptide:N-glycosidase F, PNGase F
{Flavobacterium meningosepticum [TaxId: 238]}
Length = 137
Score = 26.3 bits (58), Expect = 3.6
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 266 NRVLLAFT-GHTQTGPINY-MKNEITNDRQLVQCMISDGSCPPNGCPPW 312
++V AF G +Q+ + ++T + + M CP C W
Sbjct: 10 DKVKNAFGDGLSQSAEGTFTFPADVTTVKTIK--MFIKNECPNKTCDEW 56
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus
opacus [TaxId: 37919]}
Length = 256
Score = 25.7 bits (56), Expect = 8.3
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 58 ADILELTVRHLHRITKPHDPTEE 80
++ + + H+ T
Sbjct: 6 IELFDEFTDLIRDFIVRHEITTP 28
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio
cholerae [TaxId: 666]}
Length = 201
Score = 25.1 bits (55), Expect = 9.8
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 12 CKAMGTSVFCDAQNI-QGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHR 70
M S+F AQ+ + V L + + ++ IT E I+ + L +
Sbjct: 32 AHCMMNSLFT-AQSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKA 90
Query: 71 ITKPHDPTEEVQRFQAEGENINKLEKADILE 101
+ +E R G + + +L
Sbjct: 91 LDASVGMGKEQTRVVQPGLTVRTISFEALLG 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,203,823
Number of extensions: 53925
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 21
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)