RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14694
         (102 letters)



>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain. 
          Length = 26

 Score = 30.4 bits (69), Expect = 0.014
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 52 MRRHIRAHIGDRPYKCFVCPYRSNQ 76
          +RRH+R H G++PYKC VC    + 
Sbjct: 2  LRRHMRTHTGEKPYKCPVCGKSFSS 26


>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger. 
          Length = 23

 Score = 23.6 bits (51), Expect = 5.3
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 37 YDCFMCPYRTPYSGTMRRHIRAH 59
          Y C  C         +R H+R H
Sbjct: 1  YRCPECGKVFKSKSALREHMRTH 23


>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
          Length = 400

 Score = 25.6 bits (56), Expect = 5.9
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 8/47 (17%)

Query: 51  TMRRHIRAHIGDRPYKCFVCPYRSNQRANL--------MSHPLVQIS 89
             R  +   +GD   K +  PY    RA+L         ++P ++I 
Sbjct: 80  KARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIK 126


>gnl|CDD|221378 pfam12013, DUF3505, Protein of unknown function (DUF3505).  This
           family of proteins is functionally uncharacterized. This
           protein is found in eukaryotes. Proteins in this family
           are typically between 247 to 1018 amino acids in length.
           This region contains two segments that are likely to be
           C2H2 zinc binding domains.
          Length = 108

 Score = 25.0 bits (55), Expect = 6.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 42  CPYRTPYSGTMRRHIRAH 59
           CPY T    TMR+H R H
Sbjct: 89  CPYITRSLKTMRKHWREH 106


>gnl|CDD|222525 pfam14072, DndB, DNA-sulfur modification-associated.  This is
          family of bacterial proteins likely to be necessary for
          binding to DNA and recognising the modification sites.
          Members are found in bacteria, archaea and on viral
          plasmids, and are typically between 354 and 474 amino
          acids in length. There is a conserved DGQHR sequence
          motif.
          Length = 342

 Score = 24.9 bits (55), Expect = 8.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 56 IRAHIGDRPYKCFVCPYR 73
          IR   G R Y   +CP +
Sbjct: 4  IRGVQGGREYYVTMCPLK 21


>gnl|CDD|239395 cd03121, alpha_CARP_X_XI_like, Carbonic anhydrase alpha related
          protein: groups X, XI and related proteins. This
          subgroup contains carbonic anhydrase related proteins
          (CARPs) X and XI, which have been implicated in various
          biological processes of the central nervous system.
          CARPs are sequence similar to carbonic anhydrases.
          Carbonic anhydrases are zinc-containing enzymes that
          catalyze the reversible hydration of carbon dioxide in
          a two-step mechanism. CARPs have lost conserved
          histidines involved in zinc binding and consequently
          their catalytic activity. CARP XI plays a role in the
          development of gastrointestinal stromal tumors.
          Length = 256

 Score = 25.1 bits (55), Expect = 8.3
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 13/54 (24%)

Query: 24 LCSEGARQS------SRKKYDCFMCPYR--TPY--SGTMR---RHIRAHIGDRP 64
          LCS+G RQS      SR  +D F+ P R  T    SGT     RH+       P
Sbjct: 14 LCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGRKVSGTFYNTGRHVSFRPDKDP 67


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,893,222
Number of extensions: 375463
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 16
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)