RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14694
(102 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 50.6 bits (122), Expect = 4e-10
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 28 GARQSSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
G+ SS C C Y +R H R H DRP+KC C + + Q +NL H
Sbjct: 1 GSSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 26.3 bits (59), Expect = 0.80
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
+ + C C + T + +H++ GD
Sbjct: 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 42.8 bits (100), Expect = 3e-07
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 36 KYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
KY C C R +++HIR H RPY C C + + NL H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 23.9 bits (51), Expect = 4.4
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 31 QSSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDR 63
+ + Y C C + G + +H+++ +
Sbjct: 24 HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 38.9 bits (91), Expect = 1e-05
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAH---IGDRPYKCFVCPYRSNQRANLMSH 83
C +C + ++ H R H + + C C R + ++ +H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 30.5 bits (69), Expect = 0.025
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 59 HIGDRPYKCFVCPYRSNQRANLMSH 83
G +C +C + Q+A+L H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH 26
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 38.6 bits (91), Expect = 2e-05
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
K Y C C Y S ++ +H+R H +RP+KC +CPY S + L H
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 35.1 bits (82), Expect = 6e-04
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ C +C ++ H+R H G +PYKC C Y + ++L H
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 31.2 bits (72), Expect = 0.014
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
+ + C +CPY + S + H+R+H GD
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 27.8 bits (63), Expect = 0.30
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 59 HIGDRPYKCFVCPYRSNQRANLMSH 83
P+KC VC +++ L +H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH 27
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 37.9 bits (89), Expect = 3e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 50 GTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
G+ R H G++PY+C++C R Q + H
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMH 34
Score = 36.7 bits (86), Expect = 9e-05
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIG--DRPYKCFVCPYRSNQRANLMSH 83
K Y+C++C R SGTM+ HI + C C ++++L H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.8 bits (87), Expect = 5e-05
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 21 HYKLCSEGARQSSRKKYDCFMCPYRTPYSGTMRRHIR-AHIG---DRPYKCFVCPYRSNQ 76
H+ + Y+C C ++TP H+ H + Y C C + + +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 77 RANLMSH 83
L H
Sbjct: 63 YDALSEH 69
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 34.1 bits (78), Expect = 6e-04
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 26 SEGARQSSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVC 70
S G+ +RK+ C +C + RH +H G++PY
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 34.4 bits (80), Expect = 6e-04
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
K Y C C Y G + H H G++PY+C +C + N+ ANL +H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 30.9 bits (71), Expect = 0.013
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
H D+PYKC C + NL SH
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.7 bits (78), Expect = 7e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C R Q A+L +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 25.9 bits (58), Expect = 0.66
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPY 65
K Y C C R +R H+ H G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 34.9 bits (81), Expect = 8e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + RH R H G +P++C VC ++ +L H
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 28.7 bits (65), Expect = 0.16
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 49 SGTMRRHIRAHIGDRPYKC 67
S ++ H+R H G++PYKC
Sbjct: 30 SSHLKAHLRTHTGEKPYKC 48
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 33.8 bits (78), Expect = 0.001
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + RHIR H G +P++C +C ++ +L +H
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P+KC C R Q + L SH
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 25.6 bits (57), Expect = 0.77
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C R + + H R H G++P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 33.6 bits (78), Expect = 0.002
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
SG++ RHIR H G +P++C +C ++ +L +H
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 31.3 bits (72), Expect = 0.012
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + HIR H G++P+ C +C + + H
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ ++PYKC C N+R NL H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 23.6 bits (52), Expect = 4.7
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H R H+G++
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P+KC C NQR +L H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 25.6 bits (57), Expect = 1.0
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C + +H R H G++P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIR--AHIGDRPYKCFVCPYRSNQRANLMSH 83
Y C +C + RH + Y C C ++ N+ +H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Score = 28.3 bits (64), Expect = 0.11
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 57 RAHIGDRPYKCFVCPYRSNQRANLMSH 83
G+ Y+C VC +N H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRH 29
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S ++RH R H G +P++C C + ++ +L +H
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 29.8 bits (68), Expect = 0.076
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC--FVCPYRSNQRANLMSH 83
K + C C + S ++ H R H G++P+ C C + + L+ H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 29.4 bits (67), Expect = 0.11
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 49 SGTMRRHIRAHIGDRPYKCFV--CPYRSNQRANLMSH 83
++ H R H G++PY+C C R ++ L H
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 33.6 bits (78), Expect = 0.002
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
K + C +C S + HIR H G++P+ C +C + + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 27.5 bits (62), Expect = 0.34
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S +RH P ++ +L +
Sbjct: 44 SDERKRHRDIQ-HILPILEDKVEELLSKNYHLENE 77
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.003
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ +G++ YKC VC +Q ++L +H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 25.2 bits (56), Expect = 1.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C +C S ++ H R H G++P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.003
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+RPY C VC R+NL+ H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 25.1 bits (56), Expect = 1.4
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
+ Y C +C + +H + H G++P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.004
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C Q+ANL H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 25.2 bits (56), Expect = 1.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + +H R H G++P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 32.9 bits (76), Expect = 0.004
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + RH R H G RP++C C ++ +L H
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 28.3 bits (64), Expect = 0.20
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 30 RQSSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
++++ D C S ++ H+R H G++PY C
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 38
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 32.4 bits (75), Expect = 0.004
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S T+ H+ H RPY C C R +Q++++ H
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 31.6 bits (73), Expect = 0.010
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ Y C C R M++H H G++P+KC VC +Q +NL++H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 32.4 bits (75), Expect = 0.004
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
SG+ R R YKC C + ++L H
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 30.5 bits (70), Expect = 0.019
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + +H R H G++PYKC C QR++L+ H
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.005
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C Q ++L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 25.2 bits (56), Expect = 1.4
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + + H R H G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.005
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+R ++C C Q +N + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.005
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C N + NL H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 25.2 bits (56), Expect = 1.1
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H + H G+RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.005
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C VC Q+A+L H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 26.0 bits (58), Expect = 0.71
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C +C + +H + H G++P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.005
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+RP+KC C Q A+L+ H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 25.9 bits (58), Expect = 0.63
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
+ + C C S + +H R H G++P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.005
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C Q ++L +H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 24.8 bits (55), Expect = 1.8
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + + H R H G++P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.005
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC VC ++L+ H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 25.9 bits (58), Expect = 0.70
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C +C S + +H H G+RP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 31.7 bits (73), Expect = 0.005
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 53 RRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+RH R+H ++PY C +C +R L+ H
Sbjct: 19 KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.007
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P+KC +C R+ L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 26.7 bits (60), Expect = 0.39
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C +C + RH H ++P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 31.8 bits (73), Expect = 0.007
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
++RH + H G K C + + H
Sbjct: 46 PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 80
Score = 24.9 bits (55), Expect = 2.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 53 RRHIRAHIGDRPYKC 67
+ H +H PY+C
Sbjct: 20 KVHQFSHTQQLPYEC 34
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.007
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P++C C N ++NL+ H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 25.5 bits (57), Expect = 1.0
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K ++C C + H R H G++P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.007
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P+KC C Q +L SH
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 24.8 bits (55), Expect = 1.6
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C + + H+R H G++P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 31.7 bits (73), Expect = 0.007
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
K Y C C S + +H R H G++PYKC C +Q + L++H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 29.0 bits (66), Expect = 0.068
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
H G++PY C C ++ + L+ H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.007
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C R+NL +H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 24.4 bits (54), Expect = 2.8
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H + H G++P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 30.9 bits (71), Expect = 0.008
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C +C R L SH
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 30.9 bits (71), Expect = 0.008
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPY 65
K Y C +C R + T++ H+R H G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.008
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C Q ++L+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 24.0 bits (53), Expect = 3.4
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + + RH H G++P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.008
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C C + L H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 26.7 bits (60), Expect = 0.33
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C + ++ H R H G++P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 31.0 bits (71), Expect = 0.009
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C C + L+ H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 28.3 bits (64), Expect = 0.087
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C ++ + +H R H G++P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.009
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P++C C R Q ++L SH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 25.2 bits (56), Expect = 1.2
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C R + + H R H G++P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.010
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G +PY C C + ++L +H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 25.6 bits (57), Expect = 0.88
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C ++ H H G++P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 31.7 bits (73), Expect = 0.010
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ RH +H G++PY C VC R ++ + H
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 27.1 bits (61), Expect = 0.58
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIG--DRPYKCFVCPYRSNQRANLMSH 83
K Y C +C R M H+R+H G +PY C C ++ +L H
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 24.8 bits (55), Expect = 3.6
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 58 AHIGDRPYKCFVCPYRSNQRANLMSH 83
G C +C +L H
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRH 26
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 30.6 bits (70), Expect = 0.010
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C +Q+ +L+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 24.5 bits (54), Expect = 2.4
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPY 65
K Y C C G++ HIR H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 31.3 bits (72), Expect = 0.010
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 50 GTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
G+ R H G++PY C C Q+ L H
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34
Score = 28.6 bits (65), Expect = 0.12
Identities = 7/40 (17%), Positives = 9/40 (22%)
Query: 31 QSSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVC 70
+ C C TM RH G +
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 24.8 bits (55), Expect = 3.4
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 52 MRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+R+ + + C C +R + H
Sbjct: 35 FKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.011
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 25.9 bits (58), Expect = 0.64
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C ++ + RH R H G++P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.011
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C + ++L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 24.4 bits (54), Expect = 2.5
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 54 RHIRAHIGDRPYKC 67
RH H G++P
Sbjct: 30 RHQLIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.011
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C +Q + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 25.9 bits (58), Expect = 0.65
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + + RH R H G++P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 31.4 bits (72), Expect = 0.012
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVC 70
++ H++ H R Y C
Sbjct: 53 KKHLKEHMKLHSDTRDYICEFS 74
Score = 26.4 bits (59), Expect = 0.79
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 49 SGTMRRHIR-AHIGDRPYKC--FVCPYRSNQRANLMSH 83
+ H + HI + + C C N + +L H
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 31.6 bits (73), Expect = 0.014
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
RH+ H+G RPY C VC + + +L+ H
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Score = 26.3 bits (59), Expect = 1.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ H++ H G +PY+C +C R R + H
Sbjct: 50 KHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 24.7 bits (55), Expect = 4.1
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMS 82
H + Y+ + + + S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.014
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C C A L+ H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 25.9 bits (58), Expect = 0.66
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C S + RH R H G++P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.1 bits (69), Expect = 0.014
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C N ++NLM H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 24.0 bits (53), Expect = 3.0
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C + H R H G+
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.015
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+ P+ C C + NL+ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 24.4 bits (54), Expect = 2.2
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
+ C C + + H + H G+RP
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.015
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C ++ +L H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 25.1 bits (56), Expect = 1.4
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 54 RHIRAHIGDRPYKC 67
H R H G RP
Sbjct: 30 EHRRIHTGYRPSGP 43
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.016
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 28 GARQSSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDR 63
G+ SS K Y C C Y + + H+R H G++
Sbjct: 1 GSSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.6 bits (55), Expect = 0.77
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 63 RPYKCFVCPYRSNQRANLMSH 83
+PYKC C Y S +ANL H
Sbjct: 8 KPYKCPQCSYASAIKANLNVH 28
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.016
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C +R +L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 24.8 bits (55), Expect = 1.7
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H R H G++
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 31.7 bits (71), Expect = 0.017
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 12/87 (13%)
Query: 2 LKCTHCKVDLNLDTEI-----ILQHYKLCSEGARQSSRKKYDCFMCPYRTPYSGTMRRHI 56
+C C + E+ HY R + + + + P ++
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHY-------RDDNHETDNNNPKRWSKPRKRSLLEME 72
Query: 57 RAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ KC C + +L H
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 27.8 bits (61), Expect = 0.33
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ + + G ++C C + L H
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
Score = 24.0 bits (51), Expect = 8.8
Identities = 5/54 (9%), Positives = 13/54 (24%), Gaps = 5/54 (9%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIR-----AHIGDRPYKCFVCPYRSNQRANLMSH 83
K+ C C + H+ + ++ +L+
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 31.3 bits (72), Expect = 0.017
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 49 SGTMRRHIRAHIGDRPYKCFV--CPYRSNQRANLMSH 83
+R H+R H GDRPY C C + Q NL SH
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 30.2 bits (69), Expect = 0.056
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 49 SGTMRRHIRAHIGDRPYKCFV--CPYRSNQRANLMSH 83
S ++RH H G++P++C C R + NL +H
Sbjct: 47 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Score = 29.4 bits (67), Expect = 0.087
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 48 YSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ MR+H+ H G R + C C + + L H
Sbjct: 19 DNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH 53
Score = 24.8 bits (55), Expect = 4.8
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 49 SGTMRRHIRAHIGDRPYK 66
S ++ HI H + +
Sbjct: 107 STNLKSHILTHAKAKNNQ 124
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.017
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+ PY+C C +++ L+SH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 25.2 bits (56), Expect = 1.1
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
Y+C C + H R H G++P
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.018
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+RP+KC C +R++L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 23.6 bits (52), Expect = 4.1
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 54 RHIRAHIGDRPYKC 67
H+R H ++
Sbjct: 30 GHLRLHSREKSSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 29.8 bits (68), Expect = 0.019
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++ YKC C ++ + L H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 24.4 bits (54), Expect = 2.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K+Y C C + + +H + H G++P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 29.8 bits (68), Expect = 0.020
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P++C C + + L +H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 25.9 bits (58), Expect = 0.58
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K ++C C S + H R H G++P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.020
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC VC ++L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 27.1 bits (61), Expect = 0.27
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C +C Y ++ H R H G++P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 31.6 bits (73), Expect = 0.020
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+R H R H G++PY C C +Q A+L +H
Sbjct: 90 RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 31.6 bits (73), Expect = 0.022
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + G++PY C C ++ +L H
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
Score = 30.9 bits (71), Expect = 0.037
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
K Y C C +R H R H G++PYKC C ++ NL +H
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 30.5 bits (70), Expect = 0.053
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ H R H G++PYKC C ++R L H
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 30.5 bits (70), Expect = 0.054
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ RH R H G++PYKC C +QRANL +H
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 30.5 bits (70), Expect = 0.058
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + H R H G++PYKC C + + +L H
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 29.9 bits (68), Expect = 0.021
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCF 68
K + C C +S ++ +H+R+H P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 27.9 bits (63), Expect = 0.13
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P++C C + +L H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 29.8 bits (68), Expect = 0.021
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G +PY C C + ++ L+ H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 25.2 bits (56), Expect = 1.3
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H R+H G +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.022
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G RPY+C C +++L+ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 26.0 bits (58), Expect = 0.58
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
+ Y+C C ++ H R+H G++P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.022
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C C + ++ L+ H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 26.0 bits (58), Expect = 0.56
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H+R H G++P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.022
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+R Y+C C +++ L+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 23.6 bits (52), Expect = 4.2
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
+ Y+C C T+ H R H G++P
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.022
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G PYKC C + + L+ H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 25.6 bits (57), Expect = 0.97
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
Y C C + H R H ++P
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.023
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C +NL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 24.8 bits (55), Expect = 1.8
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H H G++P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.023
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C VC A+L H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 25.2 bits (56), Expect = 1.3
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C +C S + +H+R H +
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 29.8 bits (68), Expect = 0.023
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G +P++C C + NL++H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 26.3 bits (59), Expect = 0.50
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K ++C C G + H R H G++
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.024
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P+KC C + SH
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 26.0 bits (58), Expect = 0.67
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C + H R+H G++P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.024
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ +G++ +KC C +Q ++L H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 28.3 bits (64), Expect = 0.078
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C + ++R H H+G++P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.025
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C R +L +H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 26.7 bits (60), Expect = 0.28
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H H G++P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.026
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G + +KC C Q ++L H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 24.8 bits (55), Expect = 1.8
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C S ++ H R H G++P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 29.4 bits (67), Expect = 0.027
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C +Q +L+ H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 25.2 bits (56), Expect = 1.4
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C + + +H R H G++P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.028
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C +C +++ L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 24.8 bits (55), Expect = 1.7
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C +C + H + H G++P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.0 bits (67), Expect = 0.030
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
SG+ + + H+GDR KC C +R+ L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 23.9 bits (51), Expect = 6.6
Identities = 9/52 (17%), Positives = 12/52 (23%), Gaps = 7/52 (13%)
Query: 32 SSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ C C G + + C C S Q A L
Sbjct: 14 LGDRSQKCSKC-------GIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.031
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C +++ L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 25.5 bits (57), Expect = 1.0
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H ++H G+R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 29.4 bits (66), Expect = 0.031
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+ P+KC C QR L+ H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 30.5 bits (70), Expect = 0.032
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + + C C + NL+ H
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH 36
Score = 30.1 bits (69), Expect = 0.046
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
S + H R H +RPY C +C ++ +L H
Sbjct: 30 SYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 29.3 bits (67), Expect = 0.079
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+R H H ++P+KC C Q L H
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 25.5 bits (57), Expect = 2.5
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 49 SGTMRRHIRAHIGDRPYKC 67
S T+ H H+
Sbjct: 86 SRTLAVHKTLHMQTSSPTA 104
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 29.4 bits (67), Expect = 0.033
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P+KC C ++R+ L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 25.9 bits (58), Expect = 0.72
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C + H + H G++P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 29.2 bits (66), Expect = 0.033
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+ PY C C QR +L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.035
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C ++ L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 28.7 bits (65), Expect = 0.058
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + +R H + H G+R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.035
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C C R+NL+ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 25.6 bits (57), Expect = 1.0
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + +H + H +P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.035
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C C Q+++L H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 24.8 bits (55), Expect = 1.6
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 54 RHIRAHIGDRPYKC 67
RH R H G++P
Sbjct: 30 RHRRIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.037
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C Q ++L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 24.4 bits (54), Expect = 2.3
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 54 RHIRAHIGDRPYKC 67
RH H G++P
Sbjct: 30 RHRGIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.038
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++ Y C C ++ L+ H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 26.0 bits (58), Expect = 0.65
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C + + +H R H G++P
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.039
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G +PY+C C +Q + L H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 26.3 bits (59), Expect = 0.41
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + + RH R H G++P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.039
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C VC + R +L H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 25.5 bits (57), Expect = 1.0
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C +C + ++ H R H G +P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.040
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY C C +Q++ L +H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 25.6 bits (57), Expect = 0.78
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H R H G++P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.040
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C ++ H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 27.2 bits (61), Expect = 0.23
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + + +H R H G RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.042
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C R++L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 26.0 bits (58), Expect = 0.75
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C ++ H H G++P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.042
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P+ C C + L H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 24.4 bits (54), Expect = 2.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K +DC C + +H R H G++P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.043
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C + R++L +H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 25.2 bits (56), Expect = 1.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C ++ H H G +P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 28.7 bits (65), Expect = 0.050
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C ++ L+ H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 23.6 bits (52), Expect = 4.7
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C + + H R H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.050
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P++C C + + L+ H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 25.6 bits (57), Expect = 0.88
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K ++C C ++ + H R H G+ P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.052
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C VC + A+L H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 25.9 bits (58), Expect = 0.64
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C +C + ++ +H R H G++P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 30.3 bits (69), Expect = 0.053
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 35 KKYDCFMCPYRTPY-----SGTMRRHIRAHIGDRPYKCFV--CPYRSNQRANLMSH 83
K++ C + H+R H G++P+KC C ++ NL +H
Sbjct: 33 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 29.1 bits (66), Expect = 0.17
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 49 SGTMRRHIRAHIGDRPYKC--FVCPYRSNQRANLMSH 83
++ H+R+H G++PY C C + ++ H
Sbjct: 82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 27.2 bits (61), Expect = 0.86
Identities = 7/57 (12%), Positives = 12/57 (21%), Gaps = 8/57 (14%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHI---RAHIGDRPYKCFVCPYRS-----NQRANLMSH 83
C + HI H + + C + L+ H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Score = 25.2 bits (56), Expect = 3.6
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 49 SGTMRRHI-RAHIGDRPYKCFV--CPYRSNQRANLMSH 83
+ +H R H ++PY C + C R ++L H
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 29.1 bits (66), Expect = 0.055
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 26 SEGARQSSRKKYDCFMCPYRTPYSGTMRRHIRA-HIGDRPYKCFVC 70
S G+ S K Y C C + HI+ H +RP+KC V
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.055
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G +PY+C C Q +L H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 24.8 bits (55), Expect = 1.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C G + +H R H G+R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 28.7 bits (65), Expect = 0.061
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G +PY+C C Q +L+ H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 24.4 bits (54), Expect = 2.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRA-HIGDRPYKC 67
K Y+C C + ++ RH R H G++P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 29.8 bits (68), Expect = 0.061
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
++ H R H G++P++C C ++ NL+ H
Sbjct: 20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 29.8 bits (68), Expect = 0.068
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 49 SGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+R H+ +H G+ PYKC C + Q+ +L SH
Sbjct: 79 RMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 26.3 bits (59), Expect = 1.1
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRA---HIGDRPYKCFVCPYRSNQRANLMSH 83
K ++C C + H + ++ + C VC +R L H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 25.2 bits (56), Expect = 3.0
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 58 AHIGDRPYKCFVCPYRSNQRANLMSH 83
G +C C + + L H
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVH 26
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.062
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+R Y+C C Q++ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 25.2 bits (56), Expect = 1.4
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
+ Y+C C T+ H R H G++P
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.065
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PYKC C Q ++L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 25.2 bits (56), Expect = 1.3
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + + RH R H G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.066
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C + L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 25.2 bits (56), Expect = 1.2
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C S + +H H ++P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.084
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G +PYKC C Q ++L H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 24.8 bits (55), Expect = 2.0
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 54 RHIRAHIGDRPYKC 67
RH H G++P
Sbjct: 30 RHRGIHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.085
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++PY+C C +++ L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 24.8 bits (55), Expect = 1.5
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y+C C + H R H G+ P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.3 bits (64), Expect = 0.091
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ + Y C C + +L H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.2 bits (64), Expect = 0.092
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G +PY C C ++ L+ H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 24.8 bits (55), Expect = 1.8
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K Y C C + H R H G+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.097
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G + ++C C +++ L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 24.4 bits (54), Expect = 2.5
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K ++C C T+ H + H G++P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.099
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ + ++C C +++L H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.12
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+RPY C C + ++L+ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 25.9 bits (58), Expect = 0.66
Identities = 2/14 (14%), Positives = 6/14 (42%)
Query: 54 RHIRAHIGDRPYKC 67
H++ H ++
Sbjct: 30 EHLKRHFREKSSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 27.7 bits (62), Expect = 0.13
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
R G +P++C C ++ +L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 28.8 bits (64), Expect = 0.14
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 52 MRRHIRAHIGDRPYKC 67
+ HIR H G++
Sbjct: 78 LVNHIRVHTGEKSGPS 93
Score = 27.6 bits (61), Expect = 0.34
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 9/58 (15%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHI-RAHIGDRPYKCFVCPYR--------SNQRANLMSH 83
C + H+ H+G VC + + L++H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 29.1 bits (66), Expect = 0.16
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 48 YSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
++RH + H G K C + + H
Sbjct: 148 LPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183
Score = 26.4 bits (59), Expect = 1.7
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 49 SGTMRRHIRAHIGDRPYKC--FVCPYRSNQRANLMSH 83
+ RH H G++ + C C R +AN+ H
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 93
Score = 26.0 bits (58), Expect = 2.1
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 49 SGTMRRHIRAHIGDRPYKC--FVCPYRSNQRANLMSH 83
+ ++ H+ H G++P+ C C +L H
Sbjct: 27 NWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Score = 25.2 bits (56), Expect = 3.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 49 SGTMRRHIRAHIGDRPYKC--FVCPYRSNQRANLMSH 83
++ H +H PY+C C R + + L H
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 24.5 bits (54), Expect = 6.6
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 55 HIRAHIGDRPYKCFV--CPYRSNQRANLMSH 83
+ + Y C C N+ L +H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH 33
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 28.1 bits (63), Expect = 0.18
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 49 SGTMRRHIRAHIGDRPYKC 67
S ++ H R H G++P+ C
Sbjct: 32 SSHLKAHTRTHTGEKPFSC 50
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.18
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++P KC C ++ L+ H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 26.4 bits (59), Expect = 0.46
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K C C + + H R H+ D+
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 27.3 bits (61), Expect = 0.19
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 55 HIRAHIGDRPYKC 67
+ G++P+ C
Sbjct: 3 SGSSGTGEKPFAC 15
Score = 26.9 bits (60), Expect = 0.29
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 49 SGTMRRHIRAHIGDRPYKC 67
S + RH R+H G +P
Sbjct: 27 SDELSRHRRSHSGVKPSGP 45
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 28.7 bits (63), Expect = 0.22
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
++ C +C S ++++HIR + C VC + + H
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.1 bits (61), Expect = 0.23
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G+ PY+C C +++ L+SH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 26.3 bits (59), Expect = 0.41
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 57 RAHIGDRPYKCFVCPYRSNQRANLMSH 83
G+ PY+C C N++ L+SH
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 24.4 bits (54), Expect = 2.0
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
Y+C C + H R H G+
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.1 bits (58), Expect = 0.44
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 59 HIGDRPYKCFVCPYRSNQRANLMSH 83
G++PY C C + L+ H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH 29
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.4 bits (59), Expect = 0.46
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
+ G++ + C C + L H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 23.7 bits (52), Expect = 4.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C Y +R H R H+G++
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 27.6 bits (62), Expect = 0.60
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 49 SGTMRRHIRAHIGDRPYKCFV--CPYRSNQRANLMSH 83
+ HIR H G++P+ C C + NL H
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 27.3 bits (61), Expect = 0.79
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 49 SGTMRRHIRAHIGDRPYKC 67
S ++H+ H D+
Sbjct: 135 SSDRKKHMHVHTSDKSGPS 153
Score = 26.9 bits (60), Expect = 0.89
Identities = 6/58 (10%), Positives = 12/58 (20%), Gaps = 9/58 (15%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRS---------NQRANLMSH 83
C + H+ P + Y + L++H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Score = 26.5 bits (59), Expect = 1.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 49 SGTMRRHIRAHIGDRPYKC 67
S ++ H R H G++P+KC
Sbjct: 105 SENLKIHKRTHTGEKPFKC 123
Score = 24.9 bits (55), Expect = 3.9
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
C + L++H
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTH 44
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.9 bits (56), Expect = 0.62
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 58 AHIGDRPYKCFVCPYRSNQRANLMSH 83
G RP+ C +C +AN H
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARH 26
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 0.82
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 63 RPYKCFVCPYRSNQRANLMSH 83
+P+KC +C Y + ++NL +H
Sbjct: 8 KPFKCSLCEYATRSKSNLKAH 28
Score = 23.3 bits (49), Expect = 6.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 28 GARQSSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDR 63
G+ SS K + C +C Y T ++ H+ H ++
Sbjct: 1 GSSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin,
Fe/alpha-ketoglutarate dependent hydroxylase,
2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas
aeruginosa}
Length = 293
Score = 27.4 bits (61), Expect = 0.88
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 44 YRTPYSGTMRRHI-RAHI-GDRPY 65
R ++ RH+ R HI +
Sbjct: 262 GREAFAHRAPRHLRRVHIHAEPAL 285
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (57), Expect = 0.93
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 57 RAHIGDRPYKCFVCPYRSNQRANLMSH 83
G++P+ C C + ++ L+ H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 24.4 bits (54), Expect = 2.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
K + C C + H + H ++P
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 24.8 bits (53), Expect = 1.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 63 RPYKCFVCPYRSNQRANLMSHPLVQISDEQ 92
+ Y+C C +RS +NL +H + S E+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 26.4 bits (57), Expect = 2.2
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 30 RQSSRKKYDCFMCPYRTPYSGTMRRHIRAH 59
SS Y C +C + H+ +H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 23.9 bits (51), Expect = 3.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDR 63
K Y C C + G ++RH+R H G++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 23.3 bits (49), Expect = 5.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 31 QSSRKKYDCFMCPYRTPYSGTMRRHIRAHIG 61
S K Y C +C R M H+R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 23.0 bits (48), Expect = 9.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 58 AHIGDRPYKCFVCPYRSNQRANLMSH 83
G++PY C VC R ++ + H
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYH 29
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 6.1
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 15/38 (39%)
Query: 23 KLCSEGARQSSRKKYDCFMCPYRTPYSGTMRRHIRAHI 60
KL Q+S K Y P I+A +
Sbjct: 24 KL------QASLKLY----ADDSAPALA-----IKATM 46
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 22.8 bits (48), Expect = 7.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAH 59
K + C +CP R+ M +H+R H
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHLRTH 26
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 22.9 bits (49), Expect = 10.0
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 53 RRHIRAHIGDRPYKCFVCPY-----RSNQRANLMSH 83
R I ++ + P K F C + +R N+ SH
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSH 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.140 0.451
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,528,410
Number of extensions: 75710
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 315
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.5 bits)