RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14694
(102 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 34.6 bits (80), Expect = 9e-05
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 32 SSRKKYDCFMCPYRTPYSGTMRRHIRA-HIGDRPYKC 67
S K Y C C + HI+ H +RP+KC
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 26.5 bits (59), Expect = 0.13
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 62 DRPYKCFVCPYRSNQRANLMSH 83
+PY C C ++ +L H
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGH 24
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 34.0 bits (78), Expect = 2e-04
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 54 RHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
R R YKC C + ++L H
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKH 31
Score = 24.4 bits (53), Expect = 0.85
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIG 61
++Y C C +S + +H R H G
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTG 37
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.6 bits (75), Expect = 6e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 57 RAHIGDRPYKCFVCPYRSNQRANLMSH 83
R H G++PY+C++C R Q + H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMH 27
Score = 21.5 bits (46), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAH 59
K Y+C++C R SGTM+ HI
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQK 31
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 32.0 bits (73), Expect = 0.001
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 55 HIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
R G +P++C C ++ +L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 24.3 bits (53), Expect = 0.98
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIG 61
K + C C S + H + H+
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHML 36
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.0 bits (73), Expect = 0.001
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 57 RAHIGDRPYKCFVCPYRSNQRANLMSH 83
R H G++PY C C Q+ L H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMH 27
Score = 23.9 bits (52), Expect = 1.2
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAH 59
K Y C C + H + +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRY 31
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 31.4 bits (72), Expect = 0.002
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 59 HIGDRPYKCFVCPYRSNQRANLMSH 83
H G++PY C C ++ + L+ H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQH 26
Score = 25.3 bits (56), Expect = 0.33
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIG 61
K Y C C S + +H R H G
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVHTG 32
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.8 bits (70), Expect = 0.003
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 38 DCFMCPYRTPYSGTMRRHIRAHIGDRPYKC 67
C + ++ H++ H R Y C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.9 bits (64), Expect = 0.021
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
K Y C C + RH+ H+G RPY C VC + + +L+ H
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 27.8 bits (62), Expect = 0.034
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 59 HIGDRPYKCFVCPYRSNQRANLMSH 83
G RP+ C +C +AN H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH 26
Score = 22.4 bits (48), Expect = 3.8
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAH 59
+ + C +C RH++ H
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 27.3 bits (61), Expect = 0.052
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDR 63
KK+ C CP R S + +HI+ H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 25.4 bits (56), Expect = 0.29
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 63 RPYKCFVCPYRSNQRANLMSH 83
+ + C CP R + +L H
Sbjct: 1 KKFACPECPKRFMRSDHLSKH 21
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.2 bits (57), Expect = 0.15
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 62 DRPYKCFVCPYRSNQRANLMSH 83
+RP+KC +CPY S + L H
Sbjct: 1 ERPFKCQICPYASRNSSQLTVH 22
Score = 26.2 bits (57), Expect = 0.17
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGD 62
+ + C +CPY + S + H+R+H GD
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSHTGD 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 25.3 bits (56), Expect = 0.28
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 63 RPYKCFVCPYRSNQRANLMSH 83
R + C VC ++ +L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
Score = 25.3 bits (56), Expect = 0.30
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIGDR 63
+ + C +C ++RH R+H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 25.7 bits (56), Expect = 0.37
Identities = 3/23 (13%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 50 GTMRRHIRAHIGDRPYKCFVCPY 72
G++ ++++ + D+ ++C
Sbjct: 5 GSIDKYVK-EMPDKTFECLFPGC 26
Score = 24.9 bits (54), Expect = 0.73
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 36 KYDCFMCPYRTPYSGTMRRHIRAHIGDR 63
+ C +R HI+ H+ DR
Sbjct: 20 ECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.1 bits (54), Expect = 0.41
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 63 RPYKCFVCPYRSNQRANLMSHPLVQISDEQ 92
+ Y+C C +RS +NL +H + S E+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 21.6 bits (45), Expect = 6.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRA 58
K Y C C +R+ S ++ HI+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKT 24
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (54), Expect = 0.42
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 63 RPYKCFVCPYRSNQRANLMSH 83
RP+KC C + + Q +NL H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKH 21
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.9 bits (55), Expect = 0.47
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 63 RPYKCFVCPYRSNQRANLMSH 83
+P++C +C ++ +L +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH 22
Score = 23.0 bits (50), Expect = 2.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAHIG 61
K + C +C S + HIR H G
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 24.1 bits (52), Expect = 3.8
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 48 YSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
Y R + + P CP+ + R M
Sbjct: 334 YGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRV 369
>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 121
Score = 23.7 bits (51), Expect = 3.9
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 38 DCFMCPYRTPYSGTMRRHIRAHIGDR--PYKCFVCPYRSNQRANLMSHPLVQISDEQ 92
D ++ Y + G + I G + + + Q + VQ Q
Sbjct: 34 DSYIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQ 90
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.1 bits (47), Expect = 4.5
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 36 KYDCFMCPYRTPYSGTMRRHIRAHIGDR 63
KY C C R +++HIR H R
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 23.7 bits (51), Expect = 5.4
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 48 YSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
Y+ T + A+ P + + ++
Sbjct: 332 YADTQMYRLGANGLSLPVNQPKVAVNNGNQDGALNT 367
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 23.4 bits (50), Expect = 5.8
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 14 DTEIILQHYKLCSEGARQSSRKKYDCFMCPYRTPYSGTMRRHIRAHIGDRP 64
D E++ + A + + F+ + I G P
Sbjct: 80 DAELLALLFTRLGANALALAEGDFCFFIDEPNGELTV-----ITESRGFSP 125
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 21.8 bits (47), Expect = 6.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 63 RPYKCFVCPYRSNQRANLMSH 83
+PYKC C +Q + L++H
Sbjct: 1 KPYKCLECGKAFSQNSGLINH 21
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 23.4 bits (50), Expect = 7.7
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 48 YSGTMRRHIRAHIGDRPYKCFVCPYRSNQRANLMSH 83
Y T R + + P CP+ S+ R M +
Sbjct: 339 YGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQN 374
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.6 bits (45), Expect = 8.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 35 KKYDCFMCPYRTPYSGTMRRHIRAH 59
K Y C C Y S ++ +H+R H
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIH 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.140 0.451
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,296
Number of extensions: 16318
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 52
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)