BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14695
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human
Pyridoxine-5'-Phosphate Oxidase
Length = 261
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 11/188 (5%)
Query: 40 DPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGR 99
DP++ F +WF + AN M ++T ++DG+ ++R L+L+ +DGF T+
Sbjct: 57 DPVKQFAAWFEEAVQCPDIGE--ANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFE 114
Query: 100 SSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIR 159
S K K+L NP A+ F W L RQ+R+ G V +L + + P +I
Sbjct: 115 SRKGKELDSNPFASLVFYWEP------LNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIG 168
Query: 160 AYVCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKI 218
A V HQ + D + +K ++EL ++ ++ +P Y L+P M+F++ ++
Sbjct: 169 AVVSHQSSVIPDREYLRKKNEELEQLYQ--DQEVPKPKSWGGYVLYPQVMEFWQGQTNRL 226
Query: 219 ADRLKYVR 226
DR+ + R
Sbjct: 227 HDRIVFRR 234
>pdb|1CI0|A Chain A, Pnp Oxidase From Saccharomyces Cerevisiae
pdb|1CI0|B Chain B, Pnp Oxidase From Saccharomyces Cerevisiae
Length = 228
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 40 DPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTD-G 98
DP+ LF WF E ++ L + S GRV+SR L+ + LD GF I ++ G
Sbjct: 34 DPIDLFTKWFNEAKEDPRET-LPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWG 92
Query: 99 RSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKV--VQLETSNWIDIYEAEPLFC 156
S K+ D+ NPNAA F W + L RQ+R+ G V ETS ++ P
Sbjct: 93 TSRKAHDIATNPNAAIVFFWKD------LQRQVRVEGITEHVNRETSE--RYFKTRPRGS 144
Query: 157 KIRAYVCHQGQPVDWDTHKKNHDELLSKFE---KGQHDLARPDHVIAYKLFPTFMDFYES 213
KI A+ Q + +++ DEL K K D+ PD+ ++ P ++F++
Sbjct: 145 KIGAWASRQSDVI---KNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQG 201
Query: 214 HGLKIADRLKYVRDNENAKDWECTRIA 240
++ DR Y R EN W+ R+A
Sbjct: 202 RPSRLHDRFVYRRKTEN-DPWKVVRLA 227
>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase
R229w Mutant
Length = 261
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 11/188 (5%)
Query: 40 DPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGR 99
DP++ F +WF + AN M ++T ++DG+ ++R L+L+ +DGF T+
Sbjct: 57 DPVKQFAAWFEEAVQCPDIGE--ANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFE 114
Query: 100 SSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIR 159
S K K+L NP A+ F W L RQ+R+ G V +L + + P +I
Sbjct: 115 SRKGKELDSNPFASLVFYWEP------LNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIG 168
Query: 160 AYVCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKI 218
A V HQ + D + +K ++EL ++ ++ +P Y L+P M+F++ ++
Sbjct: 169 AVVSHQSSVIPDREYLRKKNEELEQLYQ--DQEVPKPKSWGGYVLYPQVMEFWQGQTNRL 226
Query: 219 ADRLKYVR 226
D + + R
Sbjct: 227 HDWIVFRR 234
>pdb|1G76|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1G79|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1WV4|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase In Tetragonal Crystal Form
pdb|1WV4|B Chain B, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase In Tetragonal Crystal Form
Length = 218
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 30 GIQKIDPIPADPMQLFKSWFTHHSELHSDSNLV-ANVMNVSTASKDGRVNSRSLILRRLD 88
G+++ D +PADP+ LF+ W + E + L M V+T + G+ R ++L+ D
Sbjct: 21 GLRRRD-LPADPLTLFERWLSQACE----AKLADPTAMVVATVDEHGQPYQRIVLLKHYD 75
Query: 89 EDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDI 148
E G V T+ S K+ ++ NP + F W L RQ+ + GK +L T +
Sbjct: 76 EKGMVFYTNLGSRKAHQIENNPRVSLLFPWHT------LERQVMVIGKAERLSTLEVMKY 129
Query: 149 YEAEPLFCKIRAYVCHQGQPVDW-DTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTF 207
+ + P +I A+V Q + + EL KF++G+ L P +++
Sbjct: 130 FHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPL--PSFWGGFRVSLEQ 187
Query: 208 MDFYESHGLKIADRLKYVRDNENAKDWECTRIA 240
++F++ ++ DR Y R+N+ W+ R+A
Sbjct: 188 IEFWQGGEHRLHDRFLYQRENDA---WKIDRLA 217
>pdb|1DNL|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Fmn At 1.8 Angstrom
Resolution
Length = 199
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Query: 30 GIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDE 89
G+++ D +PADP+ LF+ W + E ++ A V V+T + G+ R ++L+ DE
Sbjct: 2 GLRRRD-LPADPLTLFERWLSQACEAKL-ADPTAXV--VATVDEHGQPYQRIVLLKHYDE 57
Query: 90 DGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIY 149
G V T+ S K+ ++ NP + F W L RQ+ + GK +L T +
Sbjct: 58 KGXVFYTNLGSRKAHQIENNPRVSLLFPWHT------LERQVXVIGKAERLSTLEVXKYF 111
Query: 150 EAEPLFCKIRAYVCHQGQPVDW-DTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFM 208
+ P +I A+V Q + + EL KF++G+ L P +++ +
Sbjct: 112 HSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPL--PSFWGGFRVSLEQI 169
Query: 209 DFYESHGLKIADRLKYVRDNENAKDWECTRIA 240
+F++ ++ DR Y R+N+ W+ R+A
Sbjct: 170 EFWQGGEHRLHDRFLYQRENDA---WKIDRLA 198
>pdb|1G77|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5`-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1G78|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1JNW|A Chain A, Active Site Structure Of E. Coli Pyridoxine 5'-Phosphate
Oxidase
Length = 218
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Query: 30 GIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDE 89
G+++ D +PADP+ LF+ W + E ++ A V V+T + G+ R ++L+ DE
Sbjct: 21 GLRRRD-LPADPLTLFERWLSQACEAKL-ADPTAXV--VATVDEHGQPYQRIVLLKHYDE 76
Query: 90 DGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIY 149
G V T+ S K+ ++ NP + F W L RQ+ + GK +L T +
Sbjct: 77 KGXVFYTNLGSRKAHQIENNPRVSLLFPWHT------LERQVXVIGKAERLSTLEVXKYF 130
Query: 150 EAEPLFCKIRAYVCHQGQPVDW-DTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFM 208
+ P +I A+V Q + + EL KF++G+ L P +++ +
Sbjct: 131 HSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPL--PSFWGGFRVSLEQI 188
Query: 209 DFYESHGLKIADRLKYVRDNENAKDWECTRIA 240
+F++ ++ DR Y R+N+ W+ R+A
Sbjct: 189 EFWQGGEHRLHDRFLYQRENDA---WKIDRLA 217
>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
pdb|2A2J|B Chain B, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
Length = 246
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 7/160 (4%)
Query: 64 NVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVD 123
N M ++T + DG+ +RS++ + LDE G T S+K + L P A+ TF W
Sbjct: 81 NAMVLATVA-DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQ--- 136
Query: 124 GLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLS 183
L RQ + G V ++ T + P ++ A+ Q +PV N ++
Sbjct: 137 ---LGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVT 193
Query: 184 KFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLK 223
+ Q + P Y++ P ++F++ ++ +R++
Sbjct: 194 RRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIR 233
>pdb|1TY9|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
Fluorescens
pdb|1TY9|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
Fluorescens
Length = 222
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 15/203 (7%)
Query: 37 IPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMT 96
+PADPM + +W + + ++TA GR ++R +++ + + G V T
Sbjct: 33 LPADPMSVLHNWLERARRVGIRE---PRALALATADSQGRPSTRIVVISEISDAGVVFST 89
Query: 97 DGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFC 156
S K ++L NP A+ W ++QI + G+ V+L + D + P
Sbjct: 90 HAGSQKGRELLHNPWASGVLYWRET------SQQIILNGQAVRLPNAKADDAWLKRPYAT 143
Query: 157 KIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGL 216
+ V Q + + +N L++ Q L RP+ ++L ++F+ +
Sbjct: 144 HPMSSVSRQSEELQDVQAMRNAARQLAEL---QGPLPRPEGYCVFELRLESLEFWGNGQE 200
Query: 217 KIADRLKYVRDNENAKDWECTRI 239
++ +RL+Y R + W R+
Sbjct: 201 RLHERLRYDRSDTG---WNVRRL 220
>pdb|1T9M|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
Aeruginosa
pdb|1T9M|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
Aeruginosa
Length = 214
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 12/195 (6%)
Query: 38 PADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTD 97
PA+PM++ ++W + ++T GR ++R +++ L E G V T
Sbjct: 26 PANPMEVLRNWLERARRYGVRE---PRALALATVDGQGRPSTRIVVIAELGERGVVFATH 82
Query: 98 GRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCK 157
S K ++L +NP A+ W + ++QI + G+ +L + + P
Sbjct: 83 ADSQKGRELAQNPWASGVLYWRES------SQQIILNGRAERLPDERADAQWLSRPYQTH 136
Query: 158 IRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLK 217
+ Q + + D H + + + L RP ++L ++F+ + +
Sbjct: 137 PMSIASRQSETLA-DIHALRAE--ARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTER 193
Query: 218 IADRLKYVRDNENAK 232
+ +RL+Y RD K
Sbjct: 194 LHERLRYDRDEGGWK 208
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 142 TSNWIDIYEAEPL--FCKIRAYVCHQGQ--PVDWDTHKKNHDELLSKFEKGQHD 191
TS W D YE P+ F Y C +G PVD +KN + S K HD
Sbjct: 108 TSTWFDTYEDSPMHRFTSFSVY-CSRGHLCPVDTGLIEKNVELYFSGCAKAIHD 160
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 32 QKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDG 91
QK PI LFK + H+ + A+V V +A D + LI+ +++ G
Sbjct: 647 QKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGG 706
Query: 92 FVIMTDGRSSKSKDLKENPNAAFTFLWINN 121
++ LK N + FT L IN
Sbjct: 707 EKVV----------LKSNDVSVFTTLTING 726
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 32 QKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDG 91
QK PI LFK + H+ + A+V V +A D + LI+ +++ G
Sbjct: 647 QKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGG 706
Query: 92 FVIMTDGRSSKSKDLKENPNAAFTFLWINN 121
++ LK N + FT L IN
Sbjct: 707 EKVV----------LKSNDVSVFTTLTING 726
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
Length = 345
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 112 AAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIY 149
AAF WI+N D LY R + A K + N+ ++
Sbjct: 161 AAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMF 198
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 32 QKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDG 91
QK PI LFK + H+ + A+V V +A D + LI+ +++ G
Sbjct: 342 QKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGG 401
Query: 92 FVIMTDGRSSKSKDLKENPNAAFTFLWIN 120
++ LK N + FT L IN
Sbjct: 402 EKVV----------LKSNDVSVFTTLTIN 420
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 165 QGQPVDWDTHKKNHDELLSKFEKGQHDL 192
+GQ + WD ++N LL KF+ G +D+
Sbjct: 867 KGQQLAWDFVRENWTHLLKKFDLGSYDI 894
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 165 QGQPVDWDTHKKNHDELLSKFEKGQHDL 192
+GQ + WD ++N LL KF+ G +D+
Sbjct: 867 KGQQLAWDFVRENWTHLLKKFDLGSYDI 894
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 166 GQPVDWDTHKKNHDELLSKFEKGQHDLA 193
G P+ W +KN ++L+ KFE G +A
Sbjct: 851 GYPLAWQFLRKNWNKLVQKFELGSSSIA 878
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 166 GQPVDWDTHKKNHDELLSKFEKGQHDLA 193
G P+ W +KN ++L+ KFE G +A
Sbjct: 800 GYPLAWQFLRKNWNKLVQKFELGSSSIA 827
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 166 GQPVDWDTHKKNHDELLSKFEKGQHDLA 193
G P+ W +KN ++L+ KFE G +A
Sbjct: 317 GYPLAWQFLRKNWNKLVQKFELGSSSIA 344
>pdb|2RFB|A Chain A, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|B Chain B, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|C Chain C, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFC|A Chain A, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|B Chain B, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|C Chain C, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|D Chain D, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
Length = 343
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 31 IQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDED 90
I KI IP M LFK W + ++ N + + + R+ SR L + + D
Sbjct: 107 ISKILGIPDSDMPLFKLWSDY---------IIGNKRDENFNYVNNRMVSRLLEIFKSDSH 157
Query: 91 GFVIMTDGRSSKSKDLKENPNAAFTFLWI 119
G + + G S K++ L + + L I
Sbjct: 158 GIINVLAGSSLKNRKLTMDEKIKYIMLLI 186
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 166 GQPVDWDTHKKNHDELLSKFEKGQHDLA 193
G P+ W +KN ++L+ KFE G +A
Sbjct: 809 GYPLAWQFLRKNWNKLVQKFELGSSSIA 836
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,427,886
Number of Sequences: 62578
Number of extensions: 302800
Number of successful extensions: 732
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 22
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)