Query psy14695
Match_columns 241
No_of_seqs 227 out of 1407
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:16:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0259 PdxH Pyridoxamine-phos 100.0 1.2E-68 2.5E-73 453.4 21.3 208 4-241 4-214 (214)
2 PLN02918 pyridoxine (pyridoxam 100.0 7.9E-59 1.7E-63 446.8 25.0 225 7-241 302-544 (544)
3 KOG2586|consensus 100.0 5.4E-59 1.2E-63 393.1 15.6 201 31-241 26-228 (228)
4 PLN03049 pyridoxine (pyridoxam 100.0 5.2E-56 1.1E-60 423.3 24.9 225 7-241 220-462 (462)
5 TIGR00558 pdxH pyridoxamine-ph 100.0 2.3E-51 5E-56 357.5 24.2 196 32-241 21-217 (217)
6 PRK05679 pyridoxamine 5'-phosp 100.0 6.3E-51 1.4E-55 349.3 23.2 193 35-241 2-195 (195)
7 PF12766 Pyridox_oxase_2: Pyri 99.8 4.2E-19 9.1E-24 137.5 10.4 88 45-141 4-100 (100)
8 COG3871 Uncharacterized stress 99.8 7.9E-19 1.7E-23 142.7 9.6 118 61-216 15-134 (145)
9 TIGR03618 Rv1155_F420 PPOX cla 99.7 7.9E-16 1.7E-20 120.0 13.3 72 67-144 1-74 (117)
10 PF01243 Pyridox_oxidase: Pyri 99.6 8.7E-16 1.9E-20 113.5 9.3 79 61-144 10-89 (89)
11 TIGR03667 Rv3369 PPOX class pr 99.6 1.1E-15 2.3E-20 123.1 9.7 78 61-144 12-89 (130)
12 PF10590 PNPOx_C: Pyridoxine 5 99.6 1.6E-15 3.5E-20 99.6 6.3 42 198-241 1-42 (42)
13 COG5135 Uncharacterized conser 99.6 3.1E-15 6.7E-20 127.1 8.8 182 49-241 10-245 (245)
14 TIGR03668 Rv0121_F420 PPOX cla 99.4 1.6E-11 3.5E-16 100.6 12.7 118 61-211 10-140 (141)
15 TIGR03666 Rv2061_F420 PPOX cla 99.3 8.1E-12 1.7E-16 101.1 10.8 83 61-149 10-92 (132)
16 KOG4558|consensus 99.2 2.1E-10 4.5E-15 98.1 12.3 76 61-142 23-119 (251)
17 COG5015 Uncharacterized conser 98.9 7E-09 1.5E-13 82.2 8.0 82 61-150 9-91 (132)
18 PRK03467 hypothetical protein; 98.7 7.1E-07 1.5E-11 73.4 15.3 87 43-144 8-96 (144)
19 PRK06733 hypothetical protein; 98.6 2.1E-07 4.5E-12 77.1 9.4 73 61-141 18-92 (151)
20 PF12900 Pyridox_ox_2: Pyridox 98.6 1.2E-06 2.7E-11 71.0 13.0 80 61-143 10-96 (143)
21 COG3467 Predicted flavin-nucle 98.0 0.00019 4.2E-09 60.3 14.0 82 61-144 21-108 (166)
22 PF13883 Pyrid_oxidase_2: Pyri 97.8 0.00033 7.1E-09 59.0 10.9 122 62-214 16-157 (170)
23 TIGR00026 hi_GC_TIGR00026 deaz 97.0 0.0072 1.6E-07 47.8 9.3 74 64-150 8-87 (113)
24 COG3576 Predicted flavin-nucle 95.2 0.08 1.7E-06 44.9 7.3 75 62-142 40-118 (173)
25 PF04075 DUF385: Domain of unk 94.3 0.095 2.1E-06 42.4 5.3 74 64-150 26-105 (132)
26 COG3787 Uncharacterized protei 93.0 4.2 9.2E-05 33.1 12.7 128 61-227 10-139 (145)
27 PF04299 FMN_bind_2: Putative 79.9 35 0.00076 28.7 14.2 78 63-141 22-118 (169)
28 COG0748 HugZ Putative heme iro 79.7 0.3 6.5E-06 43.6 -1.8 59 61-120 92-150 (245)
29 PF04289 DUF447: Protein of un 72.7 8.9 0.00019 32.3 5.4 51 66-118 3-53 (177)
30 KOG3374|consensus 68.8 76 0.0016 27.3 10.1 70 74-143 70-151 (210)
31 KOG0290|consensus 37.8 48 0.001 30.9 4.1 49 66-117 210-262 (364)
32 PRK09731 putative general secr 30.4 1.2E+02 0.0027 25.8 5.3 45 37-84 131-175 (178)
33 PF14814 UB2H: Bifunctional tr 30.1 1.2E+02 0.0026 22.2 4.6 58 165-225 3-64 (85)
34 PF01613 Flavin_Reduct: Flavin 29.2 70 0.0015 25.5 3.5 55 65-120 8-65 (154)
35 TIGR02266 gmx_TIGR02266 Myxoco 28.1 2E+02 0.0044 20.6 5.6 47 85-143 22-68 (96)
36 PF04612 T2SM: Type II secreti 25.4 1.9E+02 0.0041 23.1 5.4 45 38-85 114-158 (160)
37 PF07238 PilZ: PilZ domain; I 24.5 2.5E+02 0.0055 19.6 8.2 59 70-143 17-75 (102)
38 COG2406 Protein distantly rela 23.8 74 0.0016 26.7 2.6 48 6-57 67-117 (172)
39 PF09631 Sen15: Sen15 protein; 23.6 1.7E+02 0.0037 22.1 4.5 32 41-76 54-85 (101)
40 COG2973 TrpR Trp operon repres 23.2 83 0.0018 24.5 2.6 38 4-53 62-99 (103)
No 1
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-68 Score=453.45 Aligned_cols=208 Identities=32% Similarity=0.632 Sum_probs=197.0
Q ss_pred hHHHHHHHhh-cCCCCCCCCCchhhhcCCCCCCCCC-CChHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEE
Q psy14695 4 TLRNMAQRYQ-AGLPQANPLTNLAEMTGIQKIDPIP-ADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRS 81 (241)
Q Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~ 81 (241)
.+.+|.-.|- .||.+ .++. +||+.+|.+||++|+++++ .+|++|+|||||++|+|++|+
T Consensus 4 ~~a~~r~~y~~~~l~~----------------~d~~~~~P~~lF~~Wl~eA~~~~~---~ePnAm~lATvd~~G~P~~R~ 64 (214)
T COG0259 4 VLANIRREYTKAGLRE----------------ADLPTANPLTLFRRWLEEAIRAEV---NEPNAMTLATVDEQGRPSSRI 64 (214)
T ss_pred cchhhHHHhhhccccc----------------ccCCccCHHHHHHHHHHHHHhccc---CCCceeEEEeecCCCCceeeE
Confidence 5666766776 66666 4444 9999999999999999999 999999999999999999999
Q ss_pred EEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhccCCccceeeEe
Q psy14695 82 LILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAY 161 (241)
Q Consensus 82 V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a~ 161 (241)
|+||++|+.||+||||+.|+|+++|++||+|++||+|+. +.|||||+|+|++|+++++++||.+||++|||+||
T Consensus 65 VLLK~~DerGfvFyTN~~S~Kg~eLa~np~Aal~F~W~~------L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAW 138 (214)
T COG0259 65 VLLKELDERGFVFYTNYGSRKGRELAANPYAALLFPWKE------LERQVRVEGRVERVSDEESDAYFASRPRGSQIGAW 138 (214)
T ss_pred EEecccCCCcEEEEeccCCcchhhHhhCcceeEEecchh------ccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchh
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ecCCCCcC-ChHHHHHHHHHHHhhhccCCCCCCCCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcCCCCCCceEEEec
Q psy14695 162 VCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIA 240 (241)
Q Consensus 162 ~s~qs~~i-~r~~l~~~~~~~~~~~~~~~~~~p~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~~~~~W~~~rL~ 240 (241)
+|+||.|| +|.+|+++..++.++|.++ +||+|++||||+|.|+.|||||++++|+|+|++|.++++ .|+..||+
T Consensus 139 AS~QS~~i~~r~~Le~~~ae~~~kf~~~--~iP~P~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r~~g---~W~~~RL~ 213 (214)
T COG0259 139 ASKQSRPIASRAALEAKVAELTAKFADG--EIPRPPHWGGFRIVPESIEFWQGRPSRLHDRLRYRRDDG---GWKIERLA 213 (214)
T ss_pred hccCccccCCHHHHHHHHHHHHHhcCCC--CCCCCCCccceEeeeeEEEEecCCCccceeeEEEeecCC---CeEEEecC
Confidence 99999999 9999999999999999887 799999999999999999999999999999999999855 59999999
Q ss_pred C
Q psy14695 241 A 241 (241)
Q Consensus 241 P 241 (241)
|
T Consensus 214 P 214 (214)
T COG0259 214 P 214 (214)
T ss_pred C
Confidence 8
No 2
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=100.00 E-value=7.9e-59 Score=446.82 Aligned_cols=225 Identities=28% Similarity=0.519 Sum_probs=205.0
Q ss_pred HHHHHhhcCCCCCCC--CC---------chhhhcC-----CCCCCCCCCChHHHHHHHHHHHHHhcCCCccccceEEEEe
Q psy14695 7 NMAQRYQAGLPQANP--LT---------NLAEMTG-----IQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVST 70 (241)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~---------~~~~~~~-----~~~~~~~~~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LAT 70 (241)
.++..|+.-||.+.- |. +++.++. .+.+++++.||+++|.+||++|+++++ .+|++|+|||
T Consensus 302 ~l~~ky~l~~p~y~g~~M~Vrig~~~~~~~~~~r~~y~~~~l~~~~~~~dP~~~F~~W~~eA~~~~~---~eP~Am~LAT 378 (544)
T PLN02918 302 SIVEKYKLHLPPYPGTSMCVRIGKPPSVDISALRENYISPELLEEQVETDPTDQFRKWFDEAVAAGL---REPNAMALST 378 (544)
T ss_pred HHHHHhCCCCCCCCCcccccccccccccCHHHHHhhccccCCChhhcCCCHHHHHHHHHHHHHhcCC---CCCccceEEe
Confidence 577889888887653 33 5665542 255678999999999999999999998 9999999999
Q ss_pred eCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhc
Q psy14695 71 ASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYE 150 (241)
Q Consensus 71 v~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~ 150 (241)
||.+|.|++|+|+||++|++||+||||++|+|++||++||+|+|+|||+. +.|||||+|+|++++++++++||+
T Consensus 379 v~~~G~P~~RtVlLk~~d~~g~~F~Tn~~S~K~~el~~Np~aal~F~w~~------l~rQVRi~G~v~~~~~~es~~yf~ 452 (544)
T PLN02918 379 ANKDGKPSSRMVLLKGVDKNGFVWYTNYESQKGSDLSENPSAALLFYWEE------LNRQVRVEGSVQKVPESESENYFH 452 (544)
T ss_pred eCCCCCeeeEEEEEeEEcCCceEEEECCCChhHHHHHhCCcEEEEeeecc------ccEEEEEEEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCccceeeEeecCCCCcC-ChHHHHHHHHHHHhhhccCCCCCCCCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcCC
Q psy14695 151 AEPLFCKIRAYVCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNE 229 (241)
Q Consensus 151 ~rp~~s~i~a~~s~qs~~i-~r~~l~~~~~~~~~~~~~~~~~~p~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~ 229 (241)
+||++|||+||+|+||++| +|++|++++.+++++|.+++ ++|+|++|+||+|+|++|||||++.+|+|||++|.+...
T Consensus 453 sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~-~vp~P~~WgGy~v~P~~iEFWQgr~~RLHdR~~Y~r~~~ 531 (544)
T PLN02918 453 SRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGS-VIPKPKNWGGYRLKPNLFEFWQGQQSRLHDRLQYSLQEV 531 (544)
T ss_pred hCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEEEecCEEEECCCCCCCccceEEEEecCC
Confidence 9999999999999999999 99999999999999997652 399999999999999999999999999999999999641
Q ss_pred -CCCCceEEEecC
Q psy14695 230 -NAKDWECTRIAA 241 (241)
Q Consensus 230 -~~~~W~~~rL~P 241 (241)
+++.|+.+||+|
T Consensus 532 ~~~~~W~~~rL~P 544 (544)
T PLN02918 532 NGKPVWKIHRLAP 544 (544)
T ss_pred CCCCCeEEEEeCC
Confidence 113599999998
No 3
>KOG2586|consensus
Probab=100.00 E-value=5.4e-59 Score=393.15 Aligned_cols=201 Identities=36% Similarity=0.639 Sum_probs=187.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCC-CCccchhcccC
Q psy14695 31 IQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDG-RSSKSKDLKEN 109 (241)
Q Consensus 31 ~~~~~~~~~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~-~S~K~~eL~~N 109 (241)
+.+....+.||+++|.+||+||.+.+. ..++++|+|||++.||.|++|+|++|+++.+||+||||+ .|+|+++|++|
T Consensus 26 L~e~~l~~~DPv~~F~~wf~EA~~~~~--~~~~~am~LsT~~~d~rvssRmvLlKgl~~~gf~fytn~~~srk~kdL~~N 103 (228)
T KOG2586|consen 26 LEEIELTPSDPVELFKKWFQEAAKDPD--IGEINAMTLSTADKDGRVSSRMVLLKGLDHDGFVFYTNYGTSRKGKDLQEN 103 (228)
T ss_pred hhhhhcCCCChHHHHHHHHHHHhhCCC--cCchhheeehhccccCCcceeeeeeecccCCCeEEEeeccccccccccccC
Confidence 344556678999999999999998764 279999999999999999999999999999999999999 69999999999
Q ss_pred CcEEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhccCCccceeeEeecCCCCcC-ChHHHHHHHHHHHhhhccC
Q psy14695 110 PNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPV-DWDTHKKNHDELLSKFEKG 188 (241)
Q Consensus 110 P~val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a~~s~qs~~i-~r~~l~~~~~~~~~~~~~~ 188 (241)
|+|||+|||+. +.|||||+|+|++++++++++||++||++|||+||+|+||.+| +|+.|++...++.+.|.++
T Consensus 104 P~Aal~Fyw~~------l~rQVRveG~ve~l~~ee~e~yf~srp~~SqIga~~s~qs~vI~~re~l~k~~e~l~~~~~~~ 177 (228)
T KOG2586|consen 104 PNAALLFYWED------LNRQVRVEGIVEKLPREEAEAYFKSRPRASQIGAWASPQSEVIPDREELEKKDEELTELFGDE 177 (228)
T ss_pred CcceEEEeehh------ccceeEEEeccccCCHHHHHHHHhcCcchhhccceecCCCCccCCHHHHHHHHHHHHHHhccc
Confidence 99999999999 9999999999999999999999999999999999999999999 9999999999999999876
Q ss_pred CCCCCCCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcCCCCCCceEEEecC
Q psy14695 189 QHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA 241 (241)
Q Consensus 189 ~~~~p~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~~~~~W~~~rL~P 241 (241)
+ .||+|++||||+|.|.++|||||+.+|+|||++|++.+.+ ..|+..||+|
T Consensus 178 ~-~IpkP~swgg~rl~P~~~EFwQg~~~rLhDR~~yr~~~~d-~~Wk~~rlap 228 (228)
T KOG2586|consen 178 Q-SIPKPDSWGGYRLVPQEFEFWQGQPDRLHDRIVYRRLTVD-EDWKLVRLAP 228 (228)
T ss_pred c-cccCCCcccceEEeeeeehhhcCCchhhhheEEEecccCC-CCeeEEecCC
Confidence 5 8999999999999999999999999999999999954432 3799999998
No 4
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=5.2e-56 Score=423.29 Aligned_cols=225 Identities=27% Similarity=0.523 Sum_probs=201.4
Q ss_pred HHHHHhhcCCCCCCC--CC---------chhhhc-----CCCCCCCCCCChHHHHHHHHHHHHHhcCCCccccceEEEEe
Q psy14695 7 NMAQRYQAGLPQANP--LT---------NLAEMT-----GIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVST 70 (241)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~---------~~~~~~-----~~~~~~~~~~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LAT 70 (241)
.++..|..-+|.+.. |. +++.++ +.+++++++.||+++|..||++|++++. .+|++|+|||
T Consensus 220 ~~~~~~~~~iP~y~g~~M~v~l~~~~~~~~~~~r~~y~~~~l~~~~~~~~P~~~f~~W~~~a~~~~~---~ep~am~LAT 296 (462)
T PLN03049 220 AIVEKFKLHLPPYPGTSMCVRIGKTPSVDIAALRENYVGPELLEEQVNADPIDQFKEWFDDAVAAGL---REPNAMTLAT 296 (462)
T ss_pred HHHHHhCCCCCCCCCCccccccccccccCHHHHHhhhccccCChhhcCCCHHHHHHHHHHHHHHcCC---CCCCeeEEEE
Confidence 456677766665443 22 566553 2355678999999999999999999998 9999999999
Q ss_pred eCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhc
Q psy14695 71 ASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYE 150 (241)
Q Consensus 71 v~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~ 150 (241)
+|++|.|++|+|+||+++++||+||||++|+|++||++||+|+|+|||+. ..|||||+|+|++++++++++||+
T Consensus 297 vd~~G~P~~R~VlLk~~d~~g~~F~Tn~~S~K~~eL~~Np~aal~F~w~~------~~rQvRv~G~a~~~~~~~s~~yf~ 370 (462)
T PLN03049 297 AGEDGRPSARIVLLKGVDKRGFVWYTNYDSRKAHELSANPKASLVFYWDG------LHRQVRVEGSVEKVSEEESDQYFH 370 (462)
T ss_pred ECCCCCeeEEEEEEeEEcCCcEEEEECCCCHHHHHHhhCCcEEEEeecCC------CCEEEEEEEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCccceeeEeecCCCCcC-ChHHHHHHHHHHHhhhccCCCCCCCCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcC-
Q psy14695 151 AEPLFCKIRAYVCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDN- 228 (241)
Q Consensus 151 ~rp~~s~i~a~~s~qs~~i-~r~~l~~~~~~~~~~~~~~~~~~p~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~- 228 (241)
+||++||++||+|.||++| +++.|+....++..+|.++. ++|+|++|+||+|+|++|||||++.+|+|+|++|.++.
T Consensus 371 ~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~-~~p~p~~w~g~~v~p~~iEfwq~~~~rlHdR~~y~~~~~ 449 (462)
T PLN03049 371 SRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSS-AIPKPKHWGGYRLKPELIEFWQGRESRLHDRLQYTREEI 449 (462)
T ss_pred hCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCC-CCCCCCceEEEEEEeeEEEEccCCCCCCeeEEEEEecCC
Confidence 9999999999999999999 99999999999999886532 78999999999999999999999999999999999862
Q ss_pred CCCCCceEEEecC
Q psy14695 229 ENAKDWECTRIAA 241 (241)
Q Consensus 229 ~~~~~W~~~rL~P 241 (241)
++++.|+.+||+|
T Consensus 450 ~~~~~W~~~rl~P 462 (462)
T PLN03049 450 NGKSVWKIDRLAP 462 (462)
T ss_pred CCCCCEEEEEeCC
Confidence 1112599999998
No 5
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=100.00 E-value=2.3e-51 Score=357.47 Aligned_cols=196 Identities=32% Similarity=0.597 Sum_probs=185.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCc
Q psy14695 32 QKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPN 111 (241)
Q Consensus 32 ~~~~~~~~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~ 111 (241)
+.+++++.||+++|..||++|.+++. .+|++|+|||+|.+|.|++|+|+++++++++|+|||+.+|+|+.||++||+
T Consensus 21 l~~~~~~~~P~~~f~~W~~~a~~~~~---~~~~~~~LaTvd~~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~ 97 (217)
T TIGR00558 21 LNEKDLPDDPIDLFEIWFNEAIEARL---TEPNAMTLSTVDESGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPN 97 (217)
T ss_pred CChhhcCCCHHHHHHHHHHHHHhcCC---CCCceEEEEEECCCCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCc
Confidence 34467999999999999999999998 899999999999999999999999999988999999999999999999999
Q ss_pred EEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhccCCccceeeEeecCCCCcC-ChHHHHHHHHHHHhhhccCCC
Q psy14695 112 AAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPV-DWDTHKKNHDELLSKFEKGQH 190 (241)
Q Consensus 112 val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a~~s~qs~~i-~r~~l~~~~~~~~~~~~~~~~ 190 (241)
|+|||||+. ..+||||+|+|++++++++++||.++|..+|+++|+++||++| +++.|+.....+.++++++
T Consensus 98 v~l~f~~~~------~~~qvrv~G~a~~~~~~~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~-- 169 (217)
T TIGR00558 98 AALVFFWPD------LERQVRVEGKVEKLPREESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKNTEKFEDA-- 169 (217)
T ss_pred EEEEEEeCC------CCEEEEEEEEEEECCHHHHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHHHhhccCC--
Confidence 999999999 8999999999999999999999999999999999999999999 9999999888888777655
Q ss_pred CCCCCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcCCCCCCceEEEecC
Q psy14695 191 DLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA 241 (241)
Q Consensus 191 ~~p~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~~~~~W~~~rL~P 241 (241)
++|+|++||||+|.|++||||+++.+++|+|++|.++++ +|+.+||+|
T Consensus 170 ~~p~p~~f~~~~l~p~~vEf~~l~~~r~H~R~~y~~~~~---~W~~~~l~P 217 (217)
T TIGR00558 170 EIPRPDYWGGYRVVPEEIEFWQGRPSRLHDRFVYRREND---PWKRVRLAP 217 (217)
T ss_pred CCCCCCceEEEEEECCEEEEccCCCCCCceEEEEEecCC---CEEEEEeCC
Confidence 689999999999999999999999999999999998754 599999998
No 6
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=6.3e-51 Score=349.34 Aligned_cols=193 Identities=30% Similarity=0.615 Sum_probs=183.0
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEE
Q psy14695 35 DPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAF 114 (241)
Q Consensus 35 ~~~~~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val 114 (241)
.+++.+|+++|..||++|++.+. .++++|+|||||.||.|++|+|+++++++++|+|||+.+|+|++||++||+|+|
T Consensus 2 ~~~~~~P~~~~~~wl~~a~~~~~---~~~~~~~lATv~~dG~P~~R~V~lr~~~~~~l~f~T~~~S~K~~~l~~np~val 78 (195)
T PRK05679 2 ADLPAEPLALFERWLAEAVKAEL---NDPNAMTLATVDEDGRPSQRIVLLKGFDERGFVFYTNYESRKGRQLAANPKAAL 78 (195)
T ss_pred CcccCCHHHHHHHHHHHHHhcCC---CCCceEEEEeeCCCCCEEEEEEEEEEECCCeEEEEeCCCCHHHHHHhhCCcEEE
Confidence 35899999999999999999888 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhccCCccceeeEeecCCCCcC-ChHHHHHHHHHHHhhhccCCCCCC
Q psy14695 115 TFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLA 193 (241)
Q Consensus 115 ~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a~~s~qs~~i-~r~~l~~~~~~~~~~~~~~~~~~p 193 (241)
||||+. ..+||||+|+|+++++++++++|.++|+++|+++|+++||++| +++.++....++..+|.+. +++
T Consensus 79 ~~~~~~------~~~qvrv~G~a~~~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~~--~~~ 150 (195)
T PRK05679 79 LFPWKS------LERQVRVEGRVEKVSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQG--EVP 150 (195)
T ss_pred EEecCC------CCEEEEEEEEEEEeCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccCC--CCC
Confidence 999999 8999999999999999999999999999999999999999999 9999998888888888554 688
Q ss_pred CCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcCCCCCCceEEEecC
Q psy14695 194 RPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA 241 (241)
Q Consensus 194 ~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~~~~~W~~~rL~P 241 (241)
+|++||||+|.|++||||+++.+++|+|++|.++++ +|+.++|+|
T Consensus 151 ~p~~f~~~~l~p~~veflql~~~r~H~R~~y~~~~~---~W~~~~l~P 195 (195)
T PRK05679 151 RPPHWGGYRVVPESIEFWQGRPSRLHDRILYRRDDG---GWKIERLAP 195 (195)
T ss_pred CCCccEEEEEECCEEEEcCCCCCCCcceEEEEECCC---CEEEEEeCC
Confidence 999999999999999999999989999999998754 599999998
No 7
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=99.80 E-value=4.2e-19 Score=137.46 Aligned_cols=88 Identities=25% Similarity=0.402 Sum_probs=75.9
Q ss_pred HHHHHHHHHHh-cCCCccccceEEEEeeC-CCCceeEEEEEeeEEeCC------eEEEEeCCCCccchhcc-cCCcEEEE
Q psy14695 45 FKSWFTHHSEL-HSDSNLVANVMNVSTAS-KDGRVNSRSLILRRLDED------GFVIMTDGRSSKSKDLK-ENPNAAFT 115 (241)
Q Consensus 45 f~~Wl~~A~~~-~~~~~~~~~~~~LATv~-~dG~P~~R~V~lr~~d~~------g~~F~T~~~S~K~~eL~-~NP~val~ 115 (241)
++.=|+++++. .. ...+.++|||++ ++|.|.+|+|+||++..+ -|.|+||.+|+|+.||. .||.|+++
T Consensus 4 Wr~~L~~~~~~~~~---~~~~~~~LATv~~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~ 80 (100)
T PF12766_consen 4 WRQLLERALKKNRS---HPFRYFQLATVDPPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELV 80 (100)
T ss_dssp CHHHHHHHHHHTTT---CGGGCEEEEEEE-TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEE
T ss_pred cHHHHHHHHhhcCC---CCCceeEEEEecCCCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEE
Confidence 34446777766 44 678999999999 899999999999999875 49999999999999999 99999999
Q ss_pred EEecCCcCCcccceeEEEEEEEEEeC
Q psy14695 116 FLWINNVDGLYLARQIRIAGKVVQLE 141 (241)
Q Consensus 116 f~~~~~~~~~~~~rQVri~G~a~~~~ 141 (241)
||+++ ...|+||+|+|.+++
T Consensus 81 ~~~~~------~~~Q~Ri~G~a~ii~ 100 (100)
T PF12766_consen 81 FWFPE------TREQFRIRGRASIIG 100 (100)
T ss_dssp EEECC------CTEEEEEEEEEEEE-
T ss_pred EEeCC------ccEEEEEEEEEEEEC
Confidence 99999 999999999999874
No 8
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=99.78 E-value=7.9e-19 Score=142.71 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=98.1
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeC-CeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEE
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDE-DGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQ 139 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~-~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~ 139 (241)
....+++|+|+..+|.||+|+|.+..-.. ..|||+|+..|+|+.+|+.||+|+++|..+. ..-.|.|+|+|+.
T Consensus 15 e~~kv~~l~tv~~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~------~~~fv~v~Gtael 88 (145)
T COG3871 15 EGSKVGMLATVQENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDD------HDAFVEVSGTAEL 88 (145)
T ss_pred hhCceEEEEEecCCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCC------CcceEEEEEEEEe
Confidence 56788999999999999999999765332 4599999999999999999999999998877 6678999999999
Q ss_pred eCCcchHhhhccCCccceeeEeecCCCCcCChHHHHHHHH-HHHhhhccCCCCCCCCCceEEEEEEeeEEEEeecCCC
Q psy14695 140 LETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHD-ELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGL 216 (241)
Q Consensus 140 ~~~~~~~~~f~~rp~~s~i~a~~s~qs~~i~r~~l~~~~~-~~~~~~~~~~~~~p~p~~w~~~~l~P~~iEfw~~~~~ 216 (241)
+.+ |+.+++.|. .++.||+.|+ ..|++|+++|+|+.++||+...+
T Consensus 89 ~~d----------------------------ra~~d~~W~~~~~~wFe~Gk----edP~l~~Lkv~~e~i~yw~~~~~ 134 (145)
T COG3871 89 VED----------------------------RAKIDELWTSVLEAWFEQGK----EDPDLTMLKVTAEDIDYWNSGDN 134 (145)
T ss_pred ecc----------------------------HHHHHHhhhhhHHHHHhcCC----CCCCeEEEEEchhHhHHHhccCC
Confidence 984 444444444 3678998774 34679999999999999997554
No 9
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.68 E-value=7.9e-16 Score=119.95 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=63.5
Q ss_pred EEEeeCCCCceeEEEEEeeEEeC-CeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccc-eeEEEEEEEEEeCCcc
Q psy14695 67 NVSTASKDGRVNSRSLILRRLDE-DGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLA-RQIRIAGKVVQLETSN 144 (241)
Q Consensus 67 ~LATv~~dG~P~~R~V~lr~~d~-~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~-rQVri~G~a~~~~~~~ 144 (241)
+|||++++|.|++++|.+...++ +.|||+|+..|+|+++|++||+|+|+|+++. .. ++++|+|+|+++.+.+
T Consensus 1 ~LaTv~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~------~~~~~v~i~G~a~~v~d~~ 74 (117)
T TIGR03618 1 VLATIRADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPD------FPYRYVEVEGTAELVEDPD 74 (117)
T ss_pred CEEEECCCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCC------CCccEEEEEEEEEEecCCc
Confidence 59999999999999999864333 4599999999999999999999999999987 44 8999999999998654
No 10
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.65 E-value=8.7e-16 Score=113.54 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=70.8
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeCC-eEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEE
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDED-GFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQ 139 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~~-g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~ 139 (241)
.+.++++|||+++||.|++|+|.+...+++ .++|+|+..|+|+++|++||+|+|+|..+. + ..++|+|.|+|++
T Consensus 10 ~~~~~~~laTv~~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~---~--~~~~v~~~G~a~~ 84 (89)
T PF01243_consen 10 EESKYCVLATVDEDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE---G--TRRGVRVSGTAEI 84 (89)
T ss_dssp HSTSEEEEEEEETTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT---T--TTEEEEEEEEEEE
T ss_pred cCCCEEEEEEECCCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC---c--CceEEEEEEEEEE
Confidence 567899999999999999999999876665 699999999999999999999999999876 1 4789999999999
Q ss_pred eCCcc
Q psy14695 140 LETSN 144 (241)
Q Consensus 140 ~~~~~ 144 (241)
++++|
T Consensus 85 ~~d~E 89 (89)
T PF01243_consen 85 LTDEE 89 (89)
T ss_dssp ESHHH
T ss_pred EcCCC
Confidence 98754
No 11
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.64 E-value=1.1e-15 Score=123.05 Aligned_cols=78 Identities=12% Similarity=0.225 Sum_probs=68.2
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEe
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQL 140 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~ 140 (241)
.+.++++|||+++||.|++|+|++. .+++.++|+|+.+|.|+++|++||+|+|+|+.+.+ ..++|+|+|+|+++
T Consensus 12 ~~~~~~~LaT~~~dG~P~~~P~~~~-~~d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~-----~~~~v~v~G~a~i~ 85 (130)
T TIGR03667 12 REESIVWLTTVRRSGQPQPVPVWFL-WDGTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGR-----GGDVVVFTGTAEVV 85 (130)
T ss_pred cCCCeEEEEEECCCCceEEEEEEEE-EECCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCC-----CceEEEEEEEEEEe
Confidence 5788899999999999999999984 46667999999999999999999999999987550 34799999999999
Q ss_pred CCcc
Q psy14695 141 ETSN 144 (241)
Q Consensus 141 ~~~~ 144 (241)
.+.+
T Consensus 86 ~d~~ 89 (130)
T TIGR03667 86 ADAP 89 (130)
T ss_pred CCch
Confidence 8653
No 12
>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1.4.3.5 from EC) is an enzyme that is involved in the de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. It oxidizes pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P. The enzyme requires the presence of flavin mononucleotide (FMN) as a cofactor, although there is some evidence that coenzyme F420 may perform this role in some species []. The sequences of the enzyme from bacterial (genes pdxH or fprA) [] and fungal (gene PDX3) [] sources show that this protein has been highly conserved throughout evolution. PdxH is evolutionary related [] to one of the enzymes in the phenazine biosynthesis protein pathway, phzD (also known as phzG). This entry represents one of the two dimerisation regions of the protein, located at the edge of the dimer interface, at the C terminus, being the last three beta strands, S6, S7, and S8 along with the last three residues to the end. In P21159 from SWISSPROT, S6 runs from residues 178-192, S7 from 200-206 and S8 from 211-215. the extended loop, of residues 167-177 may well be involved in the pocket formed between the two dimers that positions the FMN molecule []. ; GO: 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0055114 oxidation-reduction process; PDB: 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A 1JNW_A 1G78_A 1TY9_A 1CI0_A 1NRG_A ....
Probab=99.61 E-value=1.6e-15 Score=99.56 Aligned_cols=42 Identities=26% Similarity=0.673 Sum_probs=38.5
Q ss_pred eEEEEEEeeEEEEeecCCCCceeEEEEEEcCCCCCCceEEEecC
Q psy14695 198 VIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA 241 (241)
Q Consensus 198 w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~~~~~W~~~rL~P 241 (241)
|+||+|.|++|||||++++|+|+|++|.++.++ +|++++|+|
T Consensus 1 WgGy~l~P~~iEFWqg~~~RlHdR~~y~r~~~~--~W~~~rL~P 42 (42)
T PF10590_consen 1 WGGYRLVPEEIEFWQGRPDRLHDRIRYTRDEDG--GWTKERLQP 42 (42)
T ss_dssp EEEEEEEECEEEEEEEETTSEEEEEEEEEETTT--CEEEEEE-T
T ss_pred CCeEEEEcCEEEEeCCCCCCCEEEEEEEecCCC--CEEEEEEcC
Confidence 899999999999999999999999999998553 699999998
No 13
>COG5135 Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.1e-15 Score=127.09 Aligned_cols=182 Identities=20% Similarity=0.258 Sum_probs=119.6
Q ss_pred HHHHHHhcCCCccccceEEEEeeCCC-CceeEEEEEeeEEe-CC----eEEEEeCCCCccchhcccCC-----------c
Q psy14695 49 FTHHSELHSDSNLVANVMNVSTASKD-GRVNSRSLILRRLD-ED----GFVIMTDGRSSKSKDLKENP-----------N 111 (241)
Q Consensus 49 l~~A~~~~~~~~~~~~~~~LATv~~d-G~P~~R~V~lr~~d-~~----g~~F~T~~~S~K~~eL~~NP-----------~ 111 (241)
|-.+++.+. ++.-+.++.||||+.. |.|..|+|++|++- .| -|.|.||.+|.|+.||...| .
T Consensus 10 ~~~~lk~N~-dv~~~~yfQlATv~~~~~~PrnRTVvfRgFl~~D~~tn~L~F~TD~rS~Ki~ei~~qp~~~~~s~~~~~~ 88 (245)
T COG5135 10 FIQSLKNNT-DVEPFVYFQLATVDELTNKPRNRTVVFRGFLFHDKRTNVLTFNTDMRSSKITEIFIQPNSNNSSDSKTPF 88 (245)
T ss_pred HHHHHhcCC-ccccceeEEEEeecccCCCCccceEEEeeeeecccccceEEEecchhhhhhhHHhhccccCCCCCCCccH
Confidence 334445554 2356888999999985 99999999999986 33 37899999999999999888 7
Q ss_pred EEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhccCCccceeeE-ee-cCCCCcC--ChHHHHHHH-----HHHH
Q psy14695 112 AAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRA-YV-CHQGQPV--DWDTHKKNH-----DELL 182 (241)
Q Consensus 112 val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a-~~-s~qs~~i--~r~~l~~~~-----~~~~ 182 (241)
...|||.|+ ...|+||+|.+-.++.+.+...|. |..+-+-- .. +.-..|+ +.++=.... .+.+
T Consensus 89 fEaC~yfP~------T~eQ~RisGQ~~l~s~~~~~~~~~--Pa~~~t~d~l~~~~~r~p~~w~~~~~~r~i~~~~~~Ed~ 160 (245)
T COG5135 89 FEACFYFPE------TWEQYRISGQCFLISKQFKYDIFS--PAFSETNDDLTDEEIRTPINWDDDDDKRNIENDEHHEDE 160 (245)
T ss_pred HHHHhcccc------hhhheEeeeeEEEEchhhcCcccC--chhhhhhhhhccccccCcccCCCchhccccccccCccch
Confidence 889999999 999999999999887665543332 11111100 00 1111122 100000000 0111
Q ss_pred hhhccCC------CC---CCCC-------------------CceEEEEEEeeEEEEeecCCCCceeEEEEEEcCCCCCCc
Q psy14695 183 SKFEKGQ------HD---LARP-------------------DHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDW 234 (241)
Q Consensus 183 ~~~~~~~------~~---~p~p-------------------~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~~~~~W 234 (241)
+.|.-.+ .+ -|-| ++||++.+.+++|||+.++ .+.-.|+.|.|+.+. +.|
T Consensus 161 a~f~ppP~~s~~q~~~~~~P~P~~~~~~e~~~~l~~~~~~~~~F~lv~le~~~VdfLnL~-g~pg~R~l~~rd~n~-~~W 238 (245)
T COG5135 161 ADFYPPPQLSRHQKSLYRKPAPGQKLTSETSKQLDKLHAGLENFGLVCLEVDSVDFLNLK-GRPGERWLFQRDDNK-DLW 238 (245)
T ss_pred hhcCCCCCCCcccccccccCCCcccccccChhhHHHHHhhhcceeEEEeecCceeeeeec-CCCCceeeEeccCCc-chh
Confidence 2221000 00 0222 4699999999999999987 557899999998753 479
Q ss_pred eEEEecC
Q psy14695 235 ECTRIAA 241 (241)
Q Consensus 235 ~~~rL~P 241 (241)
..++++|
T Consensus 239 ~~q~Vnp 245 (245)
T COG5135 239 EEQEVNP 245 (245)
T ss_pred hccccCC
Confidence 9999887
No 14
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.35 E-value=1.6e-11 Score=100.57 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=81.1
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEe-------CCeEEEEe------CCCCccchhcccCCcEEEEEEecCCcCCccc
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLD-------EDGFVIMT------DGRSSKSKDLKENPNAAFTFLWINNVDGLYL 127 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d-------~~g~~F~T------~~~S~K~~eL~~NP~val~f~~~~~~~~~~~ 127 (241)
.+.+++.|||+++||.|++-+|++.- + ++.|||++ ...++|.++|++||+||+++.... +....
T Consensus 10 ~~~~~~~LaTv~~dG~P~vvPv~f~~-d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~~--~~~~~ 86 (141)
T TIGR03668 10 AQARVARLATVSPDGEPHLVPVVFAV-GAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRYD--DDWTR 86 (141)
T ss_pred ccCCEEEEEEECCCCCeEEEeEEEEE-ccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecCC--CCccc
Confidence 56889999999999999999999864 4 55688874 356799999999999999864222 11112
Q ss_pred ceeEEEEEEEEEeCCcchHhhhccCCccceeeEeecCCCCcCChHHHHHHHHHHHhhhccCCCCCCCCCceEEEEEEeeE
Q psy14695 128 ARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTF 207 (241)
Q Consensus 128 ~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a~~s~qs~~i~r~~l~~~~~~~~~~~~~~~~~~p~p~~w~~~~l~P~~ 207 (241)
.+.|.|+|+|+++.+++. +.++..+.+.++|.. ..+.|..-++++|+|++
T Consensus 87 ~~~v~v~G~a~~~~d~~~---------------------------e~~~~~~~l~~kY~~---~~~~~~~~~vi~i~~~r 136 (141)
T TIGR03668 87 LWWVRADGRAEILRPGEE---------------------------EHAAAVRLLRAKYHQ---YQAVPLEGPVIAIRVER 136 (141)
T ss_pred eEEEEEEEEEEEecCCch---------------------------hhHHHHHHHHHHhHh---hhhcCCCCcEEEEEEEE
Confidence 356999999999986541 111222233344432 11223336889999998
Q ss_pred EEEe
Q psy14695 208 MDFY 211 (241)
Q Consensus 208 iEfw 211 (241)
+-=|
T Consensus 137 ~~~w 140 (141)
T TIGR03668 137 WASW 140 (141)
T ss_pred Eecc
Confidence 8665
No 15
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.35 E-value=8.1e-12 Score=101.10 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=69.1
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEe
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQL 140 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~ 140 (241)
.+.++++|+|++.||.|++++|++. .+++.+||+|...++|+++|++||+|++++.... + ....|.|+|+|+++
T Consensus 10 ~~~~~~~LaT~~~dG~P~~~Pv~~~-~d~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~---~--~~~~v~v~G~A~~v 83 (132)
T TIGR03666 10 ARARYALLTTFRKDGTPVPTPVWAA-VDGDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRR---G--RPTGPVVPGRARIL 83 (132)
T ss_pred ccCcEEEEEEECCCCcEEEEEEEEE-EECCEEEEEECCcCHHHHHHHhCCCEEEEEECCC---C--CEeEEEEEEEEEEE
Confidence 5788899999999999999999984 4667899999999999999999999999986543 1 23569999999999
Q ss_pred CCcchHhhh
Q psy14695 141 ETSNWIDIY 149 (241)
Q Consensus 141 ~~~~~~~~f 149 (241)
.+++..+.+
T Consensus 84 ~~~e~~~~~ 92 (132)
T TIGR03666 84 DGAETARAR 92 (132)
T ss_pred cchhHHHHH
Confidence 755554433
No 16
>KOG4558|consensus
Probab=99.21 E-value=2.1e-10 Score=98.15 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=63.2
Q ss_pred cccceEEEEeeC-CCCceeEEEEEeeEEeC-----CeEEEEeCCCCccchhcccC--------------Cc-EEEEEEec
Q psy14695 61 LVANVMNVSTAS-KDGRVNSRSLILRRLDE-----DGFVIMTDGRSSKSKDLKEN--------------PN-AAFTFLWI 119 (241)
Q Consensus 61 ~~~~~~~LATv~-~dG~P~~R~V~lr~~d~-----~g~~F~T~~~S~K~~eL~~N--------------P~-val~f~~~ 119 (241)
-.+.++.|||++ ..++|+.|+|++|++.. +.+.|.|+.+|.|..+.-.. |- ..+|||+|
T Consensus 23 ~hs~yfQlAT~~~l~~~PrnRTVvfRgF~~h~~R~~~v~~ntdlrssk~~~sf~~~~~a~~~~~~~~~~P~~femC~yfp 102 (251)
T KOG4558|consen 23 IHSEYFQLATLPTLEIYPRNRTVVFRGFVWHKPRPDDVLANTDLRSSKDIASFKAAEIAEQQKNTFPSGPIPFEMCGYFP 102 (251)
T ss_pred cccceEEEeecccccCCcccceEEEecceecCCCCcceeeeccchhhhhhhhhhchhhhccccccccCCCcccceeeeec
Confidence 456779999999 69999999999999863 24889999999998775433 32 67899999
Q ss_pred CCcCCcccceeEEEEEEEEEeCC
Q psy14695 120 NNVDGLYLARQIRIAGKVVQLET 142 (241)
Q Consensus 120 ~~~~~~~~~rQVri~G~a~~~~~ 142 (241)
+ ...|+||.|.+..++.
T Consensus 103 ~------TweQ~RisGqi~~it~ 119 (251)
T KOG4558|consen 103 K------TWEQIRISGQIWLITP 119 (251)
T ss_pred h------hhhheEecceEEEEcc
Confidence 9 9999999999998843
No 17
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=7e-09 Score=82.23 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=68.2
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEe
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQL 140 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~ 140 (241)
.+.....|||++ +|.|.+|+.-..-.+++.+||.|+....-.+||++||.|++|-+... ...|||+|.|+.+
T Consensus 9 ken~~~~laTve-~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kd-------g~~vrlrg~a~f~ 80 (132)
T COG5015 9 KENKSVALATVE-DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKD-------GVMVRLRGRAEFV 80 (132)
T ss_pred HhCCcEEEEEcc-CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCC-------ceEEEEeeeEEec
Confidence 345568899999 99999999877777788999999999999999999999999998654 5679999999998
Q ss_pred CCcchHh-hhc
Q psy14695 141 ETSNWID-IYE 150 (241)
Q Consensus 141 ~~~~~~~-~f~ 150 (241)
.+-+... .|.
T Consensus 81 ~nielkk~ale 91 (132)
T COG5015 81 ENIELKKLALE 91 (132)
T ss_pred cchHHHHHHhh
Confidence 8554433 444
No 18
>PRK03467 hypothetical protein; Provisional
Probab=98.74 E-value=7.1e-07 Score=73.43 Aligned_cols=87 Identities=15% Similarity=0.267 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEEEEeeEEeCCe--EEEEeCCCCccchhcccCCcEEEEEEecC
Q psy14695 43 QLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDG--FVIMTDGRSSKSKDLKENPNAAFTFLWIN 120 (241)
Q Consensus 43 ~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g--~~F~T~~~S~K~~eL~~NP~val~f~~~~ 120 (241)
..+.+|| ...++++|||.+.+| |.+-.+.. -+|+++ |||.|+..|++++.+.+||+|+.+..-..
T Consensus 8 ~~I~~fl-----------~~~hvltLa~~~~~~-~w~A~cFY-~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~ 74 (144)
T PRK03467 8 TAISRWL-----------AKQHVVTLCVGQEGE-LWCANCFY-VFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQP 74 (144)
T ss_pred HHHHHHH-----------HhCcEEEEEEEcCCC-cceEEEEE-EEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCC
Confidence 4556776 567889999999765 55667754 467654 79999999999999999999999987543
Q ss_pred CcCCcccceeEEEEEEEEEeCCcc
Q psy14695 121 NVDGLYLARQIRIAGKVVQLETSN 144 (241)
Q Consensus 121 ~~~~~~~~rQVri~G~a~~~~~~~ 144 (241)
..=+ .-+.|.++|+++.+++++
T Consensus 75 ~~v~--~I~GvQ~~G~~~~l~~~e 96 (144)
T PRK03467 75 KTVA--LIRGVQFKGEIRRLEGEE 96 (144)
T ss_pred cchh--hceEEEEEEEEEecChhH
Confidence 1111 357788999999998765
No 19
>PRK06733 hypothetical protein; Provisional
Probab=98.64 E-value=2.1e-07 Score=77.10 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=63.1
Q ss_pred cccceEEEEeeC-CCCceeEEEEEee-EEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEE
Q psy14695 61 LVANVMNVSTAS-KDGRVNSRSLILR-RLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVV 138 (241)
Q Consensus 61 ~~~~~~~LATv~-~dG~P~~R~V~lr-~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~ 138 (241)
.....+.|||+| +||.|++-++... -+|++.++|.-+..|+=+++|++||+|+|+++.++ .. ..|+|+++
T Consensus 18 ~~~~~~~laTv~kedG~Pnv~~Iswv~a~d~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~------~~--yqIkG~a~ 89 (151)
T PRK06733 18 RKERIVTLATTDFEKQVPNVSAISWVYAVSKTSIRFAVDQRSRIVENIRHNPGVVLTIIANE------SV--YSISGAAE 89 (151)
T ss_pred cCCceEEEEEEccCCCceeEEEEEEEEEcCCCEEEEEEccCcHhHHHHhhCCcEEEEEEeCC------cE--EEEEEEEE
Confidence 344668999999 5999999988775 44667899999999999999999999999999887 55 89999999
Q ss_pred EeC
Q psy14695 139 QLE 141 (241)
Q Consensus 139 ~~~ 141 (241)
++.
T Consensus 90 i~~ 92 (151)
T PRK06733 90 ILT 92 (151)
T ss_pred EEe
Confidence 887
No 20
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=98.60 E-value=1.2e-06 Score=70.97 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=62.6
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCC-cCCc------ccceeEEE
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINN-VDGL------YLARQIRI 133 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~-~~~~------~~~rQVri 133 (241)
....++.||+++ +|.|.+.||.+- ++++.|||+|...++|...|++|| |+++++-... ..+. ...+.|.+
T Consensus 10 ~~~~~g~la~~~-~~~Py~vP~~f~-~~~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~~~~~y~SVi~ 86 (143)
T PF12900_consen 10 DRAPVGRLAFVD-DGYPYIVPVNFV-YDGGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACSFSMNYRSVIV 86 (143)
T ss_dssp HH-SEEEEEEEE-TTEEEEEEEEEE-EETTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGGEEEEEEEEEE
T ss_pred hhCCEEEEEEEe-CCEEEEEEEEEE-EECCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCcCcceEEEEEE
Confidence 345678999999 888999999985 567789999999999999999999 9999885321 0000 02678999
Q ss_pred EEEEEEeCCc
Q psy14695 134 AGKVVQLETS 143 (241)
Q Consensus 134 ~G~a~~~~~~ 143 (241)
.|+++.++++
T Consensus 87 ~G~~~~v~d~ 96 (143)
T PF12900_consen 87 FGRAEEVEDE 96 (143)
T ss_dssp EEEEEEEHSH
T ss_pred EEEEEEeCCH
Confidence 9999999743
No 21
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=98.04 E-value=0.00019 Score=60.32 Aligned_cols=82 Identities=16% Similarity=0.155 Sum_probs=66.0
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCC------cCCcccceeEEEE
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINN------VDGLYLARQIRIA 134 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~------~~~~~~~rQVri~ 134 (241)
....++.||+++ +|.|.+-|+.+- ++.+.|||++...++|+.-|+.||.||+......- -++....+.|.+.
T Consensus 21 ~~~~~~~La~~~-~~~PyivP~~y~-~~~~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~~s~~y~SVvv~ 98 (166)
T COG3467 21 AAGRVGRLAFAG-DGQPYVVPLNYG-YEGGHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFNSSRNYRSVVVF 98 (166)
T ss_pred hhCCEEEEEEcC-CCCcEEEEeEeE-EeCCeEEEEeCCcchhhHHhhcCCcEEEEEEccccceecccccCCcceEEEEEE
Confidence 456679999999 556999999985 56667999999999999999999999998864430 0123367899999
Q ss_pred EEEEEeCCcc
Q psy14695 135 GKVVQLETSN 144 (241)
Q Consensus 135 G~a~~~~~~~ 144 (241)
|+++.+++.+
T Consensus 99 G~~~~l~~~~ 108 (166)
T COG3467 99 GRAEELSDLE 108 (166)
T ss_pred eEEEEcCChH
Confidence 9999999754
No 22
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=97.77 E-value=0.00033 Score=58.99 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=70.6
Q ss_pred ccceEEEEeeCC----CCceeEEEEEeeE---EeCCe-EEEEeCCCCccchhcccCCcEEEEEEecCCcC-------Cc-
Q psy14695 62 VANVMNVSTASK----DGRVNSRSLILRR---LDEDG-FVIMTDGRSSKSKDLKENPNAAFTFLWINNVD-------GL- 125 (241)
Q Consensus 62 ~~~~~~LATv~~----dG~P~~R~V~lr~---~d~~g-~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~-------~~- 125 (241)
.....+|+|++. +|.|-.-.|.+-+ .+.+| .+|+-..-+.-.++|++||+|+|++.+....+ ..
T Consensus 16 ~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~~~~~~~~~~dp~~ 95 (170)
T PF13883_consen 16 QSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQGGDCDNSGVDPED 95 (170)
T ss_dssp H-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGGSSHHHHHT--TTS
T ss_pred hCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCCCCcccccCCCCCC
Confidence 456678999988 8999998887651 23344 78888888999999999999999999876211 10
Q ss_pred ccceeEEEEEEEEEeCCcch----HhhhccCCccceeeEeecCCCCcCChHHHHHHHHHHHhhhccCCCCCCCCCceEEE
Q psy14695 126 YLARQIRIAGKVVQLETSNW----IDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAY 201 (241)
Q Consensus 126 ~~~rQVri~G~a~~~~~~~~----~~~f~~rp~~s~i~a~~s~qs~~i~r~~l~~~~~~~~~~~~~~~~~~p~p~~w~~~ 201 (241)
+..--|.|.|+++.+..++. +.|+..-|. .+.+++.. .+..|.-|
T Consensus 96 ~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~--------------------------a~~w~~~~-----~~hdf~~~ 144 (170)
T PF13883_consen 96 PACPRVTLTGRAEPVPPDEAAAARAAYLSRHPD--------------------------AKHWLPFN-----SPHDFFFY 144 (170)
T ss_dssp TTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GG--------------------------GGGS-GG--------G--EEE
T ss_pred CCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcC--------------------------cccccccc-----ccCccEEE
Confidence 12457999999999986542 223332221 12222221 24679999
Q ss_pred EEEeeEEEEeecC
Q psy14695 202 KLFPTFMDFYESH 214 (241)
Q Consensus 202 ~l~P~~iEfw~~~ 214 (241)
+|.+++|-|-.+=
T Consensus 145 rl~i~~v~~vgGF 157 (170)
T PF13883_consen 145 RLEIERVYLVGGF 157 (170)
T ss_dssp EEEEEEEEEE-SS
T ss_pred EEEEEEEEEECcc
Confidence 9999999777653
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=97.00 E-value=0.0072 Score=47.78 Aligned_cols=74 Identities=16% Similarity=0.327 Sum_probs=58.6
Q ss_pred ceEEEEeeCC-CCceeEEEEEeeEEeCCeEEEE-eCCC----CccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEE
Q psy14695 64 NVMNVSTASK-DGRVNSRSLILRRLDEDGFVIM-TDGR----SSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKV 137 (241)
Q Consensus 64 ~~~~LATv~~-dG~P~~R~V~lr~~d~~g~~F~-T~~~----S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a 137 (241)
..+.|.|++. +|.|+..+|.+.. ++++++++ ++.. +..++||.+||.|.+.+ . . -+..+++
T Consensus 8 p~~lL~t~GRkSG~~r~tpl~~~~-~~~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~---~-------g--~~~~~~a 74 (113)
T TIGR00026 8 PVLLLTTTGRKSGKPRTTPVTYVR-HDPGVLIVASNGGAPRHPDWYKNLKANPRVRVRV---G-------G--KTFVATA 74 (113)
T ss_pred CEEEEEECCCCCCcEEEEEEEEEE-ECCEEEEEEecCCCCCCCHHHHHhhhCCcEEEEE---C-------C--EEEEEEE
Confidence 3788999965 8999999998754 45677655 7775 67799999999999986 2 1 2479999
Q ss_pred EEeCCcchHhhhc
Q psy14695 138 VQLETSNWIDIYE 150 (241)
Q Consensus 138 ~~~~~~~~~~~f~ 150 (241)
++++++|.++.|.
T Consensus 75 r~v~~~e~~~~~~ 87 (113)
T TIGR00026 75 RLVSGDERDQLWA 87 (113)
T ss_pred EECCchhHHHHHH
Confidence 9999988888876
No 24
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=95.23 E-value=0.08 Score=44.92 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=55.7
Q ss_pred ccceEEEEeeCCCCceeEEEEEee-EEeCCeEEEEeCCC-Cccchh-cccCCcEEEEEEec-CCcCCcccceeEEEEEEE
Q psy14695 62 VANVMNVSTASKDGRVNSRSLILR-RLDEDGFVIMTDGR-SSKSKD-LKENPNAAFTFLWI-NNVDGLYLARQIRIAGKV 137 (241)
Q Consensus 62 ~~~~~~LATv~~dG~P~~R~V~lr-~~d~~g~~F~T~~~-S~K~~e-L~~NP~val~f~~~-~~~~~~~~~rQVri~G~a 137 (241)
-..++.|||+|.||.|..-++..- ..|.+++...++.. ..|... |.+||++++.+... . ...-+.|.|++
T Consensus 40 ~~~~~~laT~d~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~~------~~~~f~v~gt~ 113 (173)
T COG3576 40 TSQLAALATVDKDGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRNR------RALLFLVKGTA 113 (173)
T ss_pred cccEEEEEEeccCCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccCC------ccceEEecceE
Confidence 466789999999999998877752 33446766666655 455554 99999999999876 3 45668899988
Q ss_pred EEeCC
Q psy14695 138 VQLET 142 (241)
Q Consensus 138 ~~~~~ 142 (241)
++...
T Consensus 114 ~I~~~ 118 (173)
T COG3576 114 RIQGR 118 (173)
T ss_pred EEEec
Confidence 87663
No 25
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=94.32 E-value=0.095 Score=42.43 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=52.5
Q ss_pred ceEEEEeeCC-CCceeEEEEEeeEEeCCeEEEEeC-----CCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEE
Q psy14695 64 NVMNVSTASK-DGRVNSRSLILRRLDEDGFVIMTD-----GRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKV 137 (241)
Q Consensus 64 ~~~~LATv~~-dG~P~~R~V~lr~~d~~g~~F~T~-----~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a 137 (241)
..+.|.|++. .|+|+..+|.... +++.+++... ..+.=+.||.+||.|.+.+- . -+..+++
T Consensus 26 ~~~lLtt~GRkSG~~r~tpl~~~~-~g~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~----------g--~~~~~~a 92 (132)
T PF04075_consen 26 PVLLLTTTGRKSGRPRRTPLVYVR-DGGRLVVVASNGGAPRHPDWYRNLRANPEVTVEVG----------G--RRRRVRA 92 (132)
T ss_dssp EEEEEEEE-TTT-SEEEEEEEEEE-ETTEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEET----------T--EEEEEEE
T ss_pred cEEEEEECCCCCCCeEEEEEEEEE-eCCEEEEEEccCCCCCCChhHHhhhhCCcEEEEEC----------C--EEEEEEE
Confidence 3789999976 8999999997654 4556665544 35777899999999999752 1 3677888
Q ss_pred EEeCCcchHhhhc
Q psy14695 138 VQLETSNWIDIYE 150 (241)
Q Consensus 138 ~~~~~~~~~~~f~ 150 (241)
+.+++++-+++|.
T Consensus 93 ~~~~~~er~~~~~ 105 (132)
T PF04075_consen 93 REVTDDERARLWA 105 (132)
T ss_dssp EEE-HHHHHHHHH
T ss_pred EEcCchHHHHHHH
Confidence 8888887777775
No 26
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.01 E-value=4.2 Score=33.14 Aligned_cols=128 Identities=15% Similarity=0.237 Sum_probs=82.6
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeCC--eEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEE
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDED--GFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVV 138 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~~--g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~ 138 (241)
...+++++|-.+ +|.|.+-.... -+|+. .|++.|...++.++=+..|+.|+.+..-+. .--.+-+.|..+|..+
T Consensus 10 kkq~v~Tw~~~~-e~~~w~asafY-vFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qs--Ktva~ikGVQfkge~~ 85 (145)
T COG3787 10 KKQHVLTWCVQQ-EGELWCASAFY-VFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQS--KTVALIKGVQFKGEIS 85 (145)
T ss_pred Hhhheeeeeeec-CCceeeeeeEE-EEcccceEEEEEeccchhHHHhhCCCCceeeEeccCc--eeeeeeeeeeeeeeeh
Confidence 345678888776 66677766654 36664 488889999999999999999999987654 0001346788888888
Q ss_pred EeCCcchHhhhccCCccceeeEeecCCCCcCChHHHHHHHHHHHhhhccCCCCCCCCCceEEEEEEeeEEEEeecCCCCc
Q psy14695 139 QLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKI 218 (241)
Q Consensus 139 ~~~~~~~~~~f~~rp~~s~i~a~~s~qs~~i~r~~l~~~~~~~~~~~~~~~~~~p~p~~w~~~~l~P~~iEfw~~~~~r~ 218 (241)
.++.+++++. ...+..+||-. .+. .-.+|.|.+++|-|-+. .-.+
T Consensus 86 ~l~~~q~~~A-----------------------------rk~Y~~rfp~a--kvd---~a~vwqleL~~ikftdN-aLG~ 130 (145)
T COG3787 86 RLSGEQSDAA-----------------------------RKAYNRRFPVA--KVD---SAPVWQLELDEIKFTDN-ALGF 130 (145)
T ss_pred hhhcchHHHH-----------------------------HHHHhccCchh--hcc---cCceEEeeeeeEEeecc-cccc
Confidence 8876654321 11223333321 111 12388999999998874 3335
Q ss_pred eeEEEEEEc
Q psy14695 219 ADRLKYVRD 227 (241)
Q Consensus 219 h~R~~y~~~ 227 (241)
-..+.|.|.
T Consensus 131 ~kklew~r~ 139 (145)
T COG3787 131 GKKLEWLRG 139 (145)
T ss_pred cceEEEecc
Confidence 556666553
No 27
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=79.90 E-value=35 Score=28.67 Aligned_cols=78 Identities=10% Similarity=0.019 Sum_probs=48.0
Q ss_pred cceEEEEeeCCCCceeEEEEEeeEEe---CC-eEEEEeCCCCccchhcccCCcEEEEEEecC------Cc-------CCc
Q psy14695 63 ANVMNVSTASKDGRVNSRSLILRRLD---ED-GFVIMTDGRSSKSKDLKENPNAAFTFLWIN------NV-------DGL 125 (241)
Q Consensus 63 ~~~~~LATv~~dG~P~~R~V~lr~~d---~~-g~~F~T~~~S~K~~eL~~NP~val~f~~~~------~~-------~~~ 125 (241)
..+.+|.|.+.+| |.+-.+-+.--. +. .|..+-....+-.+.|..+..|-+.|.-+. +- +.-
T Consensus 22 ~pfa~Lvt~~~~~-~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISPsWYp~k~~~~~~V 100 (169)
T PF04299_consen 22 HPFATLVTNGDGG-PVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISPSWYPTKAEHGKVV 100 (169)
T ss_dssp S-EEEEEEEETTE-EEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-CCCS----STTS--
T ss_pred CCcEEEEEcCCCC-cceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECchhhcccCcCCCCC
Confidence 4467788876554 877766553221 22 488999999999999998888888876432 11 111
Q ss_pred c--cceeEEEEEEEEEeC
Q psy14695 126 Y--LARQIRIAGKVVQLE 141 (241)
Q Consensus 126 ~--~~rQVri~G~a~~~~ 141 (241)
| ..-.|.++|+++.+.
T Consensus 101 PTWNY~aVh~~G~~~~~~ 118 (169)
T PF04299_consen 101 PTWNYAAVHAYGTVRIID 118 (169)
T ss_dssp -EEEEEEEEEEEEEEE--
T ss_pred CCcCEEEEEEEEEEEEEe
Confidence 1 245789999999986
No 28
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=79.75 E-value=0.3 Score=43.62 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=48.8
Q ss_pred cccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecC
Q psy14695 61 LVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWIN 120 (241)
Q Consensus 61 ~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~ 120 (241)
.+...+.|||++++|.|..-.--+. ++..++|+|-..-.+...+|..||+|++.|.-+.
T Consensus 92 ~~~~sv~lat~~~~g~~~~syAp~~-~~~~d~~iyis~~arh~~N~~~~p~vs~m~iede 150 (245)
T COG0748 92 LEFDSVALATLRERGLPRASYAPLY-VDDGDYYIYISEIARHARNLGFNPKVSVMFIEDE 150 (245)
T ss_pred hccchHHHhhhhhcCCcCCCcCceE-ecCCceEEEEehHHHHhhccCcCCchhhheecCc
Confidence 4677899999999999877665554 4556799999989999999999999999887554
No 29
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=72.73 E-value=8.9 Score=32.34 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=42.6
Q ss_pred EEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEe
Q psy14695 66 MNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLW 118 (241)
Q Consensus 66 ~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~ 118 (241)
..++|.+++ .|++.||-+.. +++.+.+.--.+|.=.++|.++|.+.+.+-+
T Consensus 3 ~IvtT~~~~-~~N~APiGi~~-~~~~~~~~lf~gS~T~~Nl~~~~~~vvnit~ 53 (177)
T PF04289_consen 3 VIVTTKNED-EPNAAPIGIIR-DGDELIIRLFKGSHTYENLKETGYFVVNITD 53 (177)
T ss_dssp EEEEEESTT--EEEEEEEEEE-SSSEEEEEEETTSHHHHHHHHHSEEEEEE--
T ss_pred EEEEECCCC-CCcCCcEEEEE-ECCEEEEEEcCCCchHHHHhhCCEEEEEECC
Confidence 468899999 99999999975 6678888888889999999999999998865
No 30
>KOG3374|consensus
Probab=68.77 E-value=76 Score=27.32 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=49.4
Q ss_pred CCceeEEEEEeeEEeC---Ce-EEEEeCCCCccchhcccCCcEEEEEEecCC----cCC----cccceeEEEEEEEEEeC
Q psy14695 74 DGRVNSRSLILRRLDE---DG-FVIMTDGRSSKSKDLKENPNAAFTFLWINN----VDG----LYLARQIRIAGKVVQLE 141 (241)
Q Consensus 74 dG~P~~R~V~lr~~d~---~g-~~F~T~~~S~K~~eL~~NP~val~f~~~~~----~~~----~~~~rQVri~G~a~~~~ 141 (241)
.|.|-+-.|.+-+=+. .| .|||-..--.-+.++++||+|.|+|....- +.| +|..--+-|+|++.++.
T Consensus 70 kG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~ 149 (210)
T KOG3374|consen 70 KGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFSDEQTLRCKEGGKDPMEPTCARSMLSGQVKKMD 149 (210)
T ss_pred cCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEeeccccchhhcCCCCCCCchhhhheecceEEEeC
Confidence 5788777777654332 23 688866667788999999999999976541 222 23445678999999987
Q ss_pred Cc
Q psy14695 142 TS 143 (241)
Q Consensus 142 ~~ 143 (241)
..
T Consensus 150 ~~ 151 (210)
T KOG3374|consen 150 PS 151 (210)
T ss_pred Cc
Confidence 43
No 31
>KOG0290|consensus
Probab=37.78 E-value=48 Score=30.90 Aligned_cols=49 Identities=29% Similarity=0.283 Sum_probs=35.2
Q ss_pred EEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCC-CccchhcccCC---cEEEEEE
Q psy14695 66 MNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGR-SSKSKDLKENP---NAAFTFL 117 (241)
Q Consensus 66 ~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~-S~K~~eL~~NP---~val~f~ 117 (241)
-++|+|++|| ++|..-||.++...+ +|-+.. |.+..-|.-|+ +.-.+|.
T Consensus 210 ~~FASvgaDG--SvRmFDLR~leHSTI-IYE~p~~~~pLlRLswnkqDpnymATf~ 262 (364)
T KOG0290|consen 210 DVFASVGADG--SVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSWNKQDPNYMATFA 262 (364)
T ss_pred ceEEEecCCC--cEEEEEecccccceE-EecCCCCCCcceeeccCcCCchHHhhhh
Confidence 4689999999 589999998766555 666666 78888887654 4444444
No 32
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=30.43 E-value=1.2e+02 Score=25.80 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=33.7
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEEEEe
Q psy14695 37 IPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLIL 84 (241)
Q Consensus 37 ~~~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~V~l 84 (241)
+..-|+..+-.||.+-..... -....+-|+=.+.+|...+|-+.|
T Consensus 131 ld~v~F~~ll~WL~~L~~q~G---V~V~~ldl~~~~~pG~V~V~RL~L 175 (178)
T PRK09731 131 IEPVVFNDLLNWLNALDEKYA---LRVTQIDVSAAEKPGMVNVQRLEF 175 (178)
T ss_pred ECCCCHHHHHHHHHHHHHhcC---ceEEEEeeecCCCCCEEEEEEEEe
Confidence 466799999999999875533 356667777678899999965554
No 33
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=30.09 E-value=1.2e+02 Score=22.23 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCCcCChHHHHHHHHHHHhhhccCCCCCCCCCceE----EEEEEeeEEEEeecCCCCceeEEEEE
Q psy14695 165 QGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVI----AYKLFPTFMDFYESHGLKIADRLKYV 225 (241)
Q Consensus 165 qs~~i~r~~l~~~~~~~~~~~~~~~~~~p~p~~w~----~~~l~P~~iEfw~~~~~r~h~R~~y~ 225 (241)
+|.+|+.++|+..++.+. |.... .+..|..|. .+.|.--.+.||++.....+.|+.|.
T Consensus 3 ~G~~ls~~~l~~eL~~Lg--YR~v~-~~~~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~ 64 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLG--YRKVS-NPDRPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFS 64 (85)
T ss_dssp TT-S--HHHHHHHHHHTT---EE-S-S--STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEE
T ss_pred CCcccCHHHHHHHHHHcC--CCcCC-CCCCCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEEC
Confidence 456667888876665432 32222 345666665 48888899999998777677777774
No 34
>PF01613 Flavin_Reduct: Flavin reductase like domain; InterPro: IPR002563 The FMN-binding domain is found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes, and various other oxidoreductase and monooxygenase enzymes [, , ]. This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0042602 flavin reductase activity, 0055114 oxidation-reduction process; PDB: 2ECU_A 2ED4_B 2ECR_A 1YOA_A 2QCK_A 3HMZ_A 2D36_A 2D38_A 2D37_A 3NFW_D ....
Probab=29.16 E-value=70 Score=25.45 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=41.6
Q ss_pred eEEEEeeCCCCceeEEEEEee-EEeCC--eEEEEeCCCCccchhcccCCcEEEEEEecC
Q psy14695 65 VMNVSTASKDGRVNSRSLILR-RLDED--GFVIMTDGRSSKSKDLKENPNAAFTFLWIN 120 (241)
Q Consensus 65 ~~~LATv~~dG~P~~R~V~lr-~~d~~--g~~F~T~~~S~K~~eL~~NP~val~f~~~~ 120 (241)
++.++| +++|.++.-++..- .+..+ -+.|.-+..+.-.+.|++.+..++.+...+
T Consensus 8 v~vvtt-~~~g~~~~~~~s~~~~~s~~Pp~v~~~l~~~~~t~~~i~~~~~f~vn~l~~~ 65 (154)
T PF01613_consen 8 VAVVTT-DEDGEPNGMTVSSVTSVSLDPPLVLVSLNKSSHTYDNIEESGEFTVNVLSED 65 (154)
T ss_dssp -EEEEE-EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBGG
T ss_pred cEEEEE-CCCCeEEEEEeeeeEEEECCCCEEEEEECCCCchhHHHhhCCcEEEEeCHHH
Confidence 456677 88999988666532 23333 578888888999999999999999997665
No 35
>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.
Probab=28.15 E-value=2e+02 Score=20.62 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=35.8
Q ss_pred eEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEeCCc
Q psy14695 85 RRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETS 143 (241)
Q Consensus 85 r~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~~~~ 143 (241)
.++...|+.|.|+ ..+..+-.+.+.|..+. ....+.+.|+|..+.+.
T Consensus 22 ~diS~gG~~~~~~------~~~~~g~~v~l~l~l~~------~~~~i~~~g~Vv~~~~~ 68 (96)
T TIGR02266 22 INLSKGGLFIRTR------KPLAVGTRVELKLTLPG------GERPVELKGVVAWVRPA 68 (96)
T ss_pred hhcCCceEEEecC------CCcCCCCEEEEEEEcCC------CCeEEEEEEEEEEeCCC
Confidence 4567789888874 35677889999998877 55679999999887643
No 36
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=25.43 E-value=1.9e+02 Score=23.14 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEEEEee
Q psy14695 38 PADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILR 85 (241)
Q Consensus 38 ~~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~V~lr 85 (241)
..=|++.+-.||........ -....+.|.-.+..|..+++.++++
T Consensus 114 ~~v~~~~L~~WL~~l~~~~g---i~v~~l~l~~~~~~g~v~~~~~l~~ 158 (160)
T PF04612_consen 114 ENVSFDQLLQWLQQLEQQHG---ISVTQLSLTRADEPGLVSVRLTLLR 158 (160)
T ss_dssp --B-HHHHHHHHHHHHHHS-----EEEEEEEEE------EEEEEEEEE
T ss_pred ecCCHHHHHHHHHHHHHhCC---cEEEEEEEEEcCCCCEEEEEEEEec
Confidence 34488999999999874433 4677788887778999999998875
No 37
>PF07238 PilZ: PilZ domain; InterPro: IPR009875 The ubiquitous bacterial second messenger cyclic-di-GMP (c-di-GMP) is associated with the regulation of biofilm formation, the control of exopolysaccharide synthesis, flagellar- and pili-based motility, gene expression, interactions of bacteria with eukaryotic hosts and multicellular behaviour in diverse bacteria. With the exception of bacterial cellulose synthases, the identities of c-di-GMP receptors and end targets of the proteins having one or more PilZ domains are mostly uncharacterised. However it was suggested that the PilZ domains present in the BcsA subunits of bacterial cellulose synthases function in c-di-GMP binding []. More recently YcgR (see IPR023787 from INTERPRO) was found to bind c-di-GMP tightly and specifically; also isolated PilZ domains from YcgR and BcsA bound c-di-GMP indicating that the PilZ domain was sufficient for binding of c-di-GMP and significantly that site-directed mutagenesis performed on YcgR implicated the most conserved residues in the PilZ domain directly in c-di-GMP binding []. It was suggested that c-di-GMP binding to PilZ brings about conformational changes in the protein that stabilise the bound ligand and probability initiates the downstream signal transduction cascade. In the case of YcgR, c-di-GMP binding regulates flagellum-based motility in a c-di-GMP-dependent manner (see IPR023787 from INTERPRO) []. The association of the PilZ domain with a variety of other domains, including likely components of bacterial multidrug secretion system, could provide clues to multiple functions of the c-di-GMP in bacterial pathogenesis and cell development. Binding and mutagenesis studies of several PilZ domain proteins have confirmed this observation and demonstrated that c-di-GMP binding depends on residues in RxxxR and D/NxSxxG sequence motifs. The crystal structure, at 1.7 A, of a PilZ domain::c-di-GMP complex from Vibrio cholerae shows c-di-GMP contacting seven of nine strongly conserved residues. Binding of c-di-GMP causes a conformational switch whereby the C- and N-terminal domains are brought into close opposition forming a new allosteric interaction surface that spans these domains and the c-di-GMP at their interface []. ; GO: 0035438 cyclic-di-GMP binding; PDB: 2RDE_B 1YLN_A 3KYG_A 3DSG_B 2GJG_A 3KYF_A 1YWU_A 2L74_A 2L1T_A 3CNR_A ....
Probab=24.54 E-value=2.5e+02 Score=19.60 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=40.5
Q ss_pred eeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEeCCc
Q psy14695 70 TASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETS 143 (241)
Q Consensus 70 Tv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~~~~ 143 (241)
....+|.+. .+.+.++...|+-|.++. .+..+-.+.+.|..+. ....+ +.|++..+...
T Consensus 17 ~~~~~~~~~--~~~~~diS~~G~~~~~~~------~~~~~~~v~l~~~~~~------~~~~~-~~~~V~~~~~~ 75 (102)
T PF07238_consen 17 ILDPGGSSF--QGTIVDISEGGCAFRSPK------PLEPGDRVRLSFSLPG------GGFPI-VTGRVVRIQKD 75 (102)
T ss_dssp EEEETTEEE--EEEEEEETTSEEEEEECT------G--TTSEEEEEEECTT------TSCEE-EEEEEEEEEEE
T ss_pred EEecCCcEE--EEEEEEECccceEEEECC------CCCCCCEEEEEEEeCC------CCeeE-EEEEEEEEECC
Confidence 344455543 466678889999999854 7777778899998776 44444 99998877644
No 38
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=23.76 E-value=74 Score=26.65 Aligned_cols=48 Identities=19% Similarity=0.397 Sum_probs=34.9
Q ss_pred HHHHHHhh---cCCCCCCCCCchhhhcCCCCCCCCCCChHHHHHHHHHHHHHhcC
Q psy14695 6 RNMAQRYQ---AGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHS 57 (241)
Q Consensus 6 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~lf~~Wl~~A~~~~~ 57 (241)
+-|++|-| .+||+ .|+.+.++++|-. .-+|.||-+. ..||..+++++.
T Consensus 67 e~i~~Ri~elg~~~Pr--d~~~l~dISgC~~-a~LPedp~D~-~~~l~vlv~AE~ 117 (172)
T COG2406 67 ELIAPRIYELGGDLPR--DMKKLHDISGCKP-AYLPEDPYDI-DEILAVLVKAER 117 (172)
T ss_pred HHHHHHHHHhCCCCch--hHHHHHhhcCCCC-CCCCCCccCH-HHHHHHHHHHHH
Confidence 45777655 45555 6889999999975 6788888755 688887776554
No 39
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=23.55 E-value=1.7e+02 Score=22.15 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCc
Q psy14695 41 PMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGR 76 (241)
Q Consensus 41 P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~ 76 (241)
-++.|.+||+.-..... .+..++||.|+.||.
T Consensus 54 s~~~i~~~f~~l~~~~~----~~~ri~LAiv~~DsT 85 (101)
T PF09631_consen 54 SLEQIDEVFDSLPNPSG----DPKRILLAIVDDDST 85 (101)
T ss_dssp EHHHHHHHHHHHHHHCT-------EEEEEEE-TTS-
T ss_pred CHHHHHHHHHHhcccCC----CCcEEEEEEEcCCCC
Confidence 46788999887655444 377899999998884
No 40
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=23.16 E-value=83 Score=24.45 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=23.2
Q ss_pred hHHHHHHHhhcCCCCCCCCCchhhhcCCCCCCCCCCChHHHHHHHHHHHH
Q psy14695 4 TLRNMAQRYQAGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHS 53 (241)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~lf~~Wl~~A~ 53 (241)
+=|+|+|.|-+|.-...-.+ ..+..-| ..|++||++.+
T Consensus 62 sQREi~~~LgvsiAtITRGS-----------N~LK~~~-~~~k~~L~~~l 99 (103)
T COG2973 62 SQREIAQKLGVSIATITRGS-----------NSLKTAD-PEFKQWLEKVL 99 (103)
T ss_pred cHHHHHHHhCcchhhhccch-----------hhhccCC-HHHHHHHHHHh
Confidence 34788888887765533222 2333323 37899998765
Done!