RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14695
(241 letters)
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase;
HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1
PDB: 1t9m_A*
Length = 222
Score = 125 bits (317), Expect = 6e-36
Identities = 42/211 (19%), Positives = 86/211 (40%), Gaps = 25/211 (11%)
Query: 35 DPIPADPMQLFKSWFTH--HSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGF 92
+PADPM + +W + + ++TA GR ++R +++ + + G
Sbjct: 31 QTLPADPMSVLHNWLERARRVGIRE-----PRALALATADSQGRPSTRIVVISEISDAGV 85
Query: 93 VIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAE 152
V T S K ++L NP A+ W ++QI + G+ V+L + D +
Sbjct: 86 VFSTHAGSQKGRELLHNPWASGVLYWRE------TSQQIILNGQAVRLPNAKADDAWLKR 139
Query: 153 PLFCKIRAYVCHQGQPVDWDTHKKNHDELLSK---FEKGQHDLARPDHVIAYKLFPTFMD 209
P + V Q + + + + + + Q L RP+ ++L ++
Sbjct: 140 PYATHPMSSVSRQSEELQ------DVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLE 193
Query: 210 FYESHGLKIADRLKYVRDNENAKDWECTRIA 240
F+ + ++ +RL+Y R + W R+
Sbjct: 194 FWGNGQERLHERLRYDRSDTG---WNVRRLQ 221
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex,
oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli
K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A*
1jnw_A* 1wv4_A*
Length = 199
Score = 123 bits (310), Expect = 4e-35
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 37 IPADPMQLFKSWFTH--HSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVI 94
+PADP+ LF+ W + ++L M V+T + G+ R ++L+ DE G V
Sbjct: 8 LPADPLTLFERWLSQACEAKLAD-----PTAMVVATVDEHGQPYQRIVLLKHYDEKGMVF 62
Query: 95 MTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPL 154
T+ S K+ ++ NP + F W L RQ+ + GK +L T + + + P
Sbjct: 63 YTNLGSRKAHQIENNPRVSLLFPWHT------LERQVMVIGKAERLSTLEVMKYFHSRPR 116
Query: 155 FCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEK-----GQHDLARPDHVIAYKLFPTFMD 209
+I A+V Q + L SKF + Q ++ P +++ ++
Sbjct: 117 DSQIGAWVSKQSSRIS------ARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIE 170
Query: 210 FYESHGLKIADRLKYVRDNENAKDWECTRIA 240
F++ ++ DR Y R+N+ W+ R+A
Sbjct: 171 FWQGGEHRLHDRFLYQRENDA---WKIDRLA 198
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN
PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A*
Length = 261
Score = 122 bits (307), Expect = 5e-34
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 27/236 (11%)
Query: 11 RYQAGLPQANPLTNLAEM--------TGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLV 62
Y + L + +L M ++ DP++ F +WF +
Sbjct: 20 GYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGE-- 77
Query: 63 ANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNV 122
AN M ++T ++DG+ ++R L+L+ +DGF T+ S K K+L NP A+ F W
Sbjct: 78 ANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEP-- 135
Query: 123 DGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELL 182
L RQ+R+ G V +L + + P +I A V HQ + + + L
Sbjct: 136 ----LNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIP------DREYLR 185
Query: 183 SKFEK-----GQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKD 233
K E+ ++ +P Y L+P M+F++ ++ DR+ + R
Sbjct: 186 KKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDS 241
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI,
protein structure initiative; HET: FMN; 2.70A
{Saccharomyces cerevisiae} SCOP: b.45.1.1
Length = 228
Score = 119 bits (301), Expect = 2e-33
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 17/209 (8%)
Query: 37 IPADPMQLFKSWFTH--HSELHSDSNLVANVMNVSTAS-KDGRVNSRSLILRRLDEDGFV 93
+ DP+ LF WF + + S+A GRV+SR L+ + LD GF
Sbjct: 31 LTDDPIDLFTKWFNEAKEDPRETL----PEAITFSSAELPSGRVSSRILLFKELDHRGFT 86
Query: 94 IMTD-GRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAE 152
I ++ G S K+ D+ NPNAA F W + L RQ+R+ G + ++
Sbjct: 87 IYSNWGTSRKAHDIATNPNAAIVFFWKD------LQRQVRVEGITEHVNRETSERYFKTR 140
Query: 153 PLFCKIRAYVCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFY 211
P KI A+ Q + + + + + +F+ + D+ PD+ ++ P ++F+
Sbjct: 141 PRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAE-DIPCPDYWGGLRIVPLEIEFW 199
Query: 212 ESHGLKIADRLKYVRDNENAKDWECTRIA 240
+ ++ DR Y R EN W+ R+A
Sbjct: 200 QGRPSRLHDRFVYRRKTENDP-WKVVRLA 227
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural
genomics, mycobacterium tuberculosis structural
proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium
tuberculosis} SCOP: b.45.1.1
Length = 246
Score = 111 bits (280), Expect = 3e-30
Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 33/214 (15%)
Query: 35 DPIPADPMQLFKSWFTH--HSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGF 92
D + + L + W + + N M ++T + DG+ +RS++ + LDE G
Sbjct: 55 DWLDDGWLTLLRRWLNDAQRAGVSE-----PNAMVLATVA-DGKPVTRSVLCKILDESGV 108
Query: 93 VIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAE 152
T S+K + L P A+ TF W L RQ + G V ++ T +
Sbjct: 109 AFFTSYTSAKGEQLAVTPYASATFPWYQ------LGRQAHVQGPVSKVSTEEIFTYWSMR 162
Query: 153 PLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEK------GQHDLARPDHVIAYKLFPT 206
P ++ A+ Q +PV + +L ++ + Q + P Y++ P
Sbjct: 163 PRGAQLGAWASQQSRPVG------SRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPE 216
Query: 207 FMDFYESHGLKIADRLKYVRDNENAKDWECTRIA 240
++F++ ++ +R++ R+
Sbjct: 217 IVEFWQGRENRMHNRIRVAN-------GRLERLQ 243
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine
5'-phosphate oxidase-related protein, structura
genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}
Length = 195
Score = 94.5 bits (235), Expect = 4e-24
Identities = 38/207 (18%), Positives = 77/207 (37%), Gaps = 18/207 (8%)
Query: 39 ADPMQLFKSWFTHHSELHSDSNLV-ANVMNVSTASKDGRVNSRSLILRRLDED--GFVIM 95
+ ++ H LH + +LV A + ++T +GR +R+L+ R ED +
Sbjct: 1 GMSLAPWRGAIAHA--LHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFI 58
Query: 96 TDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQL--ETSNWIDIYEAEP 153
TD RS+K+ +++ P A + + N Q R+AG + + + S+
Sbjct: 59 TDTRSAKADQIQQQPWAEICWYFPN------TREQFRMAGDLTLISSDDSHQDLQPARIA 112
Query: 154 LFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYES 213
++ ++ Q + + + L P +D E
Sbjct: 113 MWQELSDAARLQFGWPYPGKPRIKESGAFEPSPPDPIE--PVPNFCLLLLDPVQVDHLEL 170
Query: 214 HGLKIADRLKYVRDNENAKDWECTRIA 240
G + +R Y R+++ +W I
Sbjct: 171 RG-EPQNRWLYHRNDQQ--EWSSEAIN 194
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI-2; 2.00A {Streptococcus suis}
Length = 150
Score = 73.4 bits (180), Expect = 1e-16
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 64 NVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVD 123
V +T + G ++R + +E+G MT + L + A T + +
Sbjct: 15 KVGVFATLDEYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAIS----E 70
Query: 124 GLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRA 160
YL + +R+ G +E ++ P + I
Sbjct: 71 EGYLIQVVRVEGTARPVENDYLKTVFADNPYYQHIYK 107
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis;
NP_350077.1, structural genomics, joint center for
structural genomics; 2.00A {Clostridium acetobutylicum}
SCOP: b.45.1.1
Length = 146
Score = 53.1 bits (127), Expect = 3e-09
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 63 ANVMNVSTASKDGRVNSRSLILRRLDEDG-FVIMTDGRSSKSKDLKENPNAAFTFLWINN 121
+ ++ V T ++G N ++++ + D F + T+ + + LK+N F+ N
Sbjct: 18 SKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK 77
Query: 122 VDGLYLARQIRIAGKVVQLETSN-----WIDIYEA 151
+ + G + L W D E
Sbjct: 78 ------FAGLMLVGTIEILHDRASKEMLWTDGCEI 106
>2fhq_A Putative general stress protein; alpha-beta structure, structural
genomics, PSI, protein STRU initiative; HET: MSE; 1.87A
{Bacteroides thetaiotaomicron} SCOP: b.45.1.1
Length = 141
Score = 47.6 bits (113), Expect = 3e-07
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 63 ANVMNVSTASKDGRVNSRSLILRRLDEDGFV-IMTDGRSSKSKDLKENPNAAFTFLWINN 121
V+ +++ +K+G + + + + T S K+ D NP A F
Sbjct: 20 CEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQE--- 76
Query: 122 VDGLYLARQIRIAGKVVQLETSN-----WIDIYEA 151
+ + G+V + W D +
Sbjct: 77 -----KGDSVALMGEVEVVTDEKLKQELWQDWFIE 106
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}
Length = 150
Score = 47.6 bits (113), Expect = 3e-07
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 65 VMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDG 124
V ++T + R E I+++ K + +NP + +
Sbjct: 32 VFYLATNE-GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKKG--- 87
Query: 125 LYLARQIRIAGKVVQLETSNWID-IYEAEPLFCKI 158
+ IR+ G+V + + EA P +
Sbjct: 88 ----QWIRLTGEVANDDRREVKELALEAVPSLKNM 118
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like
family protein, structural genomics, joint center for
structural genomics; HET: MSE FMN P33; 1.80A {Nostoc
punctiforme} SCOP: b.45.1.1
Length = 148
Score = 41.5 bits (97), Expect = 4e-05
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 68 VSTASKDGRVNSRSLILRR-LDEDGFV-IMTDGRSSKSKDLKENPNAAFTFLWINNVDGL 125
+T DG ++S + ++ + + T S K +++ + +F
Sbjct: 27 FTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQ---- 82
Query: 126 YLARQIRIAGKVVQLETSNWIDIY 149
R + I+G ++ N +
Sbjct: 83 --QRYVSISGTSQLVKDRNKMREL 104
>2re7_A Uncharacterized protein; general stress protein COG3871, structural
genomics, joint C structural genomics, JCSG; 2.50A
{Psychrobacter arcticus}
Length = 134
Score = 41.1 bits (96), Expect = 5e-05
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 68 VSTASKDGRVNSRSLILRRLDEDGFVI--MTDGRSSKSKDLKENPNAAFTFLWINNVDGL 125
+ST++K G +++ + ++ D I + D S KD++++ T+ +
Sbjct: 23 ISTSNKKGDIHAWPMTTSEVNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDE---- 78
Query: 126 YLARQIRIAGKV 137
+ I+G
Sbjct: 79 --KNYVSISGDA 88
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420
dependent reductase, unknown function; HET: MSE; 1.23A
{Mycobacterium smegmatis}
Length = 131
Score = 39.8 bits (93), Expect = 1e-04
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 63 ANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNV 122
+++T DG + + D + + K +++K NP A + +
Sbjct: 15 PLYGHLATVRPDGTPQV-NAMWFAWDGEVLRFTHTTKRQKYRNIKANPAVAMSV-----I 68
Query: 123 DGLYLARQIRIAGKVVQLETSNWIDIYEA 151
D R + + G V + Y
Sbjct: 69 DPDNPYRYLEVRGLVEDIVPDPTGAFYLK 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 66/228 (28%)
Query: 28 MTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRL 87
M+ I+ P+ +++ L++D+ + A NVS L L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAK-YNVSRLQP---YLKLRQALLEL 147
Query: 88 DEDGFVI---MTDGRSSKS-------KDLKENPNAAFTFLWINNVDGLYLARQIRIAGKV 137
V+ + S K+ K F W+N L +
Sbjct: 148 RPAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMDFKIFWLN------LKNCNSPETVL 199
Query: 138 VQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDH 197
L+ + +Q P +W + + + + Q +L R
Sbjct: 200 EMLQK-------------------LLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRR--- 236
Query: 198 VIAYKLFPTFMDFYESHGLKIADRLKYVRDNE--NAKDWEC-----TR 238
++ K + + L + V++ + NA + C TR
Sbjct: 237 LLKSKPYE--------NCLLVLLN---VQNAKAWNAFNLSCKILLTTR 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 8e-04
Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 60/168 (35%)
Query: 22 LTNLAEMTGIQKIDPIPADPMQLFKSWFTHHS--E---LHSDSNLVANVMNVSTASK--- 73
L A ++ IPAD + F HS E L S +A+VM++ + +
Sbjct: 1738 LMEKAAFEDLKSKGLIPAD------ATFAGHSLGEYAALAS----LADVMSIESLVEVVF 1787
Query: 74 --------------DGRVNSR------SLILRRLDEDGFVIMTDGRSSKSKDLKENPNAA 113
GR N + ++ + + ++ L E
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE---IV 1844
Query: 114 FTFLWIN-NVDGLYLARQIRIAGKVVQLET-SNWIDIYEAEPLFCKIR 159
N NV+ +Q AG + L+T +N ++ F K++
Sbjct: 1845 ------NYNVEN----QQYVAAGDLRALDTVTNVLN-------FIKLQ 1875
Score = 33.1 bits (75), Expect = 0.097
Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 81/240 (33%)
Query: 2 GSTLRNMAQRYQAGLPQA-------NPLTNLAEMTG------IQKIDPIPADP------- 41
S L+ +++ LP+ + T AE+ G ++P
Sbjct: 30 ASQLQ---EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 42 -MQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRS 100
+ F++ + +++H+ L A + D + +++ R
Sbjct: 87 CLTEFENCYLEGNDIHA---LAAKL----LQENDTTLVKTKELIK--------NYITARI 131
Query: 101 SKSKDLKENPNAAFTFLWINNVDGLYLARQIRIA----GKVVQLETSNWID----IYEAE 152
+ + N+A V ++ G Q T ++ + +Y+
Sbjct: 132 MAKRPFDKKSNSAL----FRAVG----EGNAQLVAIFGG---QGNTDDYFEELRDLYQTY 180
Query: 153 PLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYE 212
+ + + K E LS+ + D A K+F ++ E
Sbjct: 181 HVL--VGDLI-------------KFSAETLSELIRTTLD--------AEKVFTQGLNILE 217
Score = 30.8 bits (69), Expect = 0.54
Identities = 28/204 (13%), Positives = 58/204 (28%), Gaps = 62/204 (30%)
Query: 18 QANPLTNLAEMTGIQKIDP---IPADPM---------QLFKSWFTHHSELHSDSNLVANV 65
+A P T+L ++ +P+ PM Q+ +S L + + ++
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 66 MNVSTASKDGRV---NSRSLI-----LRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFL 117
+N V +SL LR+ + S+ + + FL
Sbjct: 371 VN----GAKNLVVSGPPQSLYGLNLTLRKAKAP-----SGLDQSRIPFSERKLKFSNRFL 421
Query: 118 WIN-------------NVDGLYLARQIRIAGKVVQLE-----TSNWIDIYEAEPLFCKIR 159
+ ++ + + K ++ T + D+ I
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAK--DIQIPVYDTFDGSDLRVLSG---SIS 476
Query: 160 AYVCHQ--GQPVDWD-------TH 174
+ PV W+ TH
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATH 500
Score = 26.9 bits (59), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 14 AGLPQA-NPLTNLAEMTGIQKIDPIP 38
AG +A + +TN+ +QKID I
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIE 1881
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split
barrel-like fold, structural genomics, joint center FO
structural genomics, JCSG; HET: MSE FMN; 1.60A
{Jannaschia SP}
Length = 175
Score = 37.6 bits (86), Expect = 0.001
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 66 MNVSTASKDGRVNSRSLILRRLDEDG--FVIMTDGRSSKSKDLKENPNAAFTFLWINNVD 123
++T DG + R+L+LR TD S K ++ + A
Sbjct: 32 PTLATIGTDG-PDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKASL 90
Query: 124 GLYLARQIRI 133
+ +I
Sbjct: 91 QVRAKAIAKI 100
>3ec6_A General stress protein 26; alpha-beta structure, structural
genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis}
Length = 139
Score = 33.3 bits (76), Expect = 0.027
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 63 ANVMNVSTASKDGRVNSRSLILRRLDEDG-FVIMTDGRSSKSKDLKENPNAAFTFLWINN 121
+ST D ++ + ED + TD +S K D++ NPN
Sbjct: 15 QRTGVLSTVRNDKPHSAF---MMFFHEDFVLYVATDRQSKKITDIENNPNVHVLL---GR 68
Query: 122 VDGLYLARQIRIAGKV 137
I + G
Sbjct: 69 EGKKLDEDYIEVEGLA 84
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein;
NP_783940.1, structural genomics; HET: MSE; 1.55A
{Lactobacillus plantarum WCFS1}
Length = 145
Score = 32.2 bits (72), Expect = 0.067
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 64 NVMNVSTASKDGRVNSRSLILRRLDEDG--FVIMTDGRSSKSKDLKENPNAAFTFLWINN 121
N + +ST + + + + + + + S K +NP+ AF + +
Sbjct: 15 NKIALST-AVNNEADVKIVNFVWYEAQPDTLYFSSVKTSPALKVYDQNPDIAFITIPNDG 73
Query: 122 VDGLYLARQIRIAGKVVQLETSNWIDIYE 150
G +R +Q T D+
Sbjct: 74 TAG---NPYLRAQHVKLQRSTKTMTDLLP 99
>2htd_A Predicted flavin-nucleotide-binding protein from family
structurally related to pyridoxine...; putative
pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A
{Lactobacillus delbrueckii subsp}
Length = 140
Score = 30.9 bits (70), Expect = 0.17
Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 68 VSTASKDGRVN-SRSLILRRLDEDGFVIMTDGRSSKS-KDLKENPNAAFTFLWINNVDGL 125
++T DG + LD + + ++ +++K A + + +
Sbjct: 43 LATVDADGNPQVGPKGSMTVLD-PSHLQYLEKTKGEAYENIKRGSKVALVAADVPSHTAV 101
Query: 126 YLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYV 162
R+ E ++ A+ F
Sbjct: 102 ------RVLATAEVHEDDDYAKKVLAKTEFPNAFVVN 132
>3rqi_A Response regulator protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET: PHD
CIT; 1.70A {Burkholderia pseudomallei}
Length = 184
Score = 30.0 bits (68), Expect = 0.41
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 80 RSLILRRLDEDGFVIMT--DGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIR 132
+ R L+ G+ + + + E L + N GL L +
Sbjct: 20 AGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLC 74
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN;
1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A*
3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A*
2e83_A*
Length = 122
Score = 29.2 bits (65), Expect = 0.47
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 65 VMNVSTASKDGR--VNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNV 122
V+ ++T +DG VN+ + L+ LD + V+ G ++ + T L V
Sbjct: 15 VVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMT-LGSRKV 73
Query: 123 DGL-YLARQIRIAGKV 137
G I G
Sbjct: 74 AGRNGPGTGFLIRGSA 89
>3crn_A Response regulator receiver domain protein, CHEY-; structural
genomics, signal regulator receiver domain; HET: PHD;
1.58A {Methanospirillum hungatei jf-1}
Length = 132
Score = 29.0 bits (65), Expect = 0.72
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 80 RSLILRRLDEDGFVIMT--DGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIR 132
+ L+ +G+ + +K E N A + + +++G L +
Sbjct: 16 LDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAH 70
>1uv7_A General secretion pathway protein M; transport; HET: MSE; 1.7A
{Vibrio cholerae} SCOP: d.67.4.1
Length = 110
Score = 26.9 bits (59), Expect = 3.0
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 3 STLRNMAQRYQAGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLV 62
+ N +++ L + P + ++ I P+P F + + L +
Sbjct: 27 QVITNSTRQFNIELIRVQPRGEMMQVW----IQPLP------FSQLVSWIAYLQERQGVS 76
Query: 63 ANVMNVSTASKDGRVNSRSLILRR 86
+ +++ +G V + L L+R
Sbjct: 77 VDAIDIDRGKVNGVVEVKRLQLKR 100
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for
STRU genomics, JCSG, protein structure initiative, PSI,
unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Length = 113
Score = 26.3 bits (58), Expect = 5.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 155 FCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHD 191
+ I+ Y+ G P DW K+ +L FE+G +
Sbjct: 36 YKAIQKYMWTSGGPTDWQDTKRIFGGILDLFEEGAAE 72
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding
protein, metalloregulatory protein; 1.61A {Bacillus
subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A
2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A*
2hyg_D 3r60_A* 3r61_A*
Length = 142
Score = 26.5 bits (59), Expect = 5.7
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 59 SNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRS 100
+ +A + V +S V ++++LD+D ++I R
Sbjct: 25 VSDIAEALAVHPSS----VTK---MVQKLDKDEYLIYEKYRG 59
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 26.9 bits (60), Expect = 7.5
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 144 NWIDIYEAEPLFCKIRAYVCHQGQPV 169
N ++ E +F K V G +
Sbjct: 74 NETGLFNDETVFAKDT--VTCVGHII 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.409
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,813,470
Number of extensions: 222499
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 38
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)