RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14695
(241 letters)
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 94.1 bits (233), Expect = 2e-24
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 37 IPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMT 96
+PADP+ LF+ W + E M V+T + G+ R ++L+ DE G V T
Sbjct: 8 LPADPLTLFERWLSQACEAKLAD---PTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYT 64
Query: 97 DGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFC 156
+ S K+ ++ NP + F W RQ+ + GK +L T + + + P
Sbjct: 65 NLGSRKAHQIENNPRVSLLFPWHTLE------RQVMVIGKAERLSTLEVMKYFHSRPRDS 118
Query: 157 KIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGL 216
+I A+V Q + ++ L K + Q ++ P +++ ++F++
Sbjct: 119 QIGAWVSKQSSRISARGILESKFLEL-KQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEH 177
Query: 217 KIADRLKYVRDNENAKDWECTRIA 240
++ DR Y R+N+ W+ R+A
Sbjct: 178 RLHDRFLYQRENDA---WKIDRLA 198
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 90.7 bits (224), Expect = 5e-23
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 23/216 (10%)
Query: 38 PADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTD 97
DP++ F +WF + AN M ++T ++DG+ ++R L+L+ +DGF T+
Sbjct: 7 SLDPVKQFAAWFEEAVQCPDIGE--ANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTN 64
Query: 98 GRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCK 157
S K K+L NP A+ F W L RQ+R+ G V +L + + P +
Sbjct: 65 FESRKGKELDSNPFASLVFYWE------PLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQ 118
Query: 158 IRAYVCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGL 216
I A V HQ + D + +K ++EL ++ ++ +P Y L+P M+F++
Sbjct: 119 IGAVVSHQSSVIPDREYLRKKNEELEQLYQDQ--EVPKPKSWGGYVLYPQVMEFWQGQTN 176
Query: 217 KIADRLKYVRDNENA------------KDWECTRIA 240
++ DR+ + R +DW R+A
Sbjct: 177 RLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLA 212
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 89.2 bits (220), Expect = 2e-22
Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 11/206 (5%)
Query: 37 IPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTAS-KDGRVNSRSLILRRLDEDGFVIM 95
+ DP+ LF WF E + + S+A GRV+SR L+ + LD GF I
Sbjct: 8 LTDDPIDLFTKWFNEAKE--DPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIY 65
Query: 96 -TDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPL 154
G S K+ D+ NPNAA F W + RQ+R+ G + ++ P
Sbjct: 66 SNWGTSRKAHDIATNPNAAIVFFWKDLQ------RQVRVEGITEHVNRETSERYFKTRPR 119
Query: 155 FCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESH 214
KI A+ Q + + ++ K D+ PD+ ++ P ++F++
Sbjct: 120 GSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGR 179
Query: 215 GLKIADRLKYVRDNENAKDWECTRIA 240
++ DR Y R EN W+ R+A
Sbjct: 180 PSRLHDRFVYRRKTENDP-WKVVRLA 204
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 204
Score = 83.0 bits (204), Expect = 4e-20
Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 15/206 (7%)
Query: 35 DPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVI 94
+ PA+PM++ ++W + ++T GR ++R +++ L E G V
Sbjct: 13 EAPPANPMEVLRNWLERARRYGVRE---PRALALATVDGQGRPSTRIVVIAELGERGVVF 69
Query: 95 MTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPL 154
T S K ++L +NP A+ W + +QI + G+ +L + + P
Sbjct: 70 ATHADSQKGRELAQNPWASGVLYWRESS------QQIILNGRAERLPDERADAQWLSRPY 123
Query: 155 FCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESH 214
+ Q + + + L++ + L RP ++L ++F+ +
Sbjct: 124 QTHPMSIASRQSETLADIHALRAEARRLAETDG---PLPRPPGYCLFELCLESVEFWGNG 180
Query: 215 GLKIADRLKYVRDNENAKDWECTRIA 240
++ +RL+Y RD W+ +
Sbjct: 181 TERLHERLRYDRDEGG---WKHRYLQ 203
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP
oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 201
Score = 79.0 bits (194), Expect = 9e-19
Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 21/209 (10%)
Query: 34 IDPIPADPMQLFKSWFT--HHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDG 91
D + + L + W + + N M ++T + DG+ +RS++ + LDE G
Sbjct: 11 FDWLDDGWLTLLRRWLNDAQRAGVSE-----PNAMVLATVA-DGKPVTRSVLCKILDESG 64
Query: 92 FVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEA 151
T S+K + L P A+ TF W L RQ + G V ++ T +
Sbjct: 65 VAFFTSYTSAKGEQLAVTPYASATFPWY------QLGRQAHVQGPVSKVSTEEIFTYWSM 118
Query: 152 EPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFY 211
P ++ A+ Q +PV N +++ Q + P Y++ P ++F+
Sbjct: 119 RPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFW 178
Query: 212 ESHGLKIADRLKYVRDNENAKDWECTRIA 240
+ ++ +R++ R+
Sbjct: 179 QGRENRMHNRIRVAN-------GRLERLQ 200
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 135
Score = 43.9 bits (103), Expect = 2e-06
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 63 ANVMNVSTASKDGRVNSRSLILRRLDEDGFV-IMTDGRSSKSKDLKENPNAAFTFLWINN 121
V+ +++ +K+G + + + + T S K+ D NP A F
Sbjct: 15 CEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQE--- 71
Query: 122 VDGLYLARQIRIAGKVVQLETSNWIDIYEAEPL 154
+ + G+V + +
Sbjct: 72 -----KGDSVALMGEVEVVTDEKLKQELWQDWF 99
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium
acetobutylicum [TaxId: 1488]}
Length = 141
Score = 40.9 bits (95), Expect = 2e-05
Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 48 WFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDG-FVIMTDGRSSKSKDL 106
+ +EL + ++ V T ++G N ++++ + D F + T+ + + L
Sbjct: 5 FLIESNELVES----SKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERL 60
Query: 107 KENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPL 154
K+N F+ N + + G + L ++ +
Sbjct: 61 KKNNKICLYFVDDNK------FAGLMLVGTIEILHDRASKEMLWTDGC 102
>d1ixha_ c.94.1.1 (A:) Phosphate-binding protein {Escherichia coli
[TaxId: 562]}
Length = 321
Score = 28.3 bits (62), Expect = 0.86
Identities = 20/163 (12%), Positives = 45/163 (27%), Gaps = 19/163 (11%)
Query: 82 LILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLE 141
++ R + T + +++ K N T W + G ++
Sbjct: 132 VVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAI 191
Query: 142 TS-NWIDIYEAEPLFCKIRAYVCHQGQP---------VDWDTHKKNHDELLSKFEKGQHD 191
+ + + K+ + P D K +L ++ +
Sbjct: 192 GYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWP 251
Query: 192 LARPDHVIAYKLFPT---------FMDFYESHGLKIADRLKYV 225
+ ++ +K F D+ G K A+ L Y
Sbjct: 252 ITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYA 294
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 26.5 bits (58), Expect = 1.6
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 80 RSLILRRLDEDGF--VIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIR 132
R + + L+ GF + + + + + + +DGL L R+I
Sbjct: 13 RKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKIL 67
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus
halodurans [TaxId: 86665]}
Length = 112
Score = 25.9 bits (57), Expect = 2.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 155 FCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHD 191
+ I+ Y+ G P DW K+ +L FE+G +
Sbjct: 35 YKAIQKYMWTSGGPTDWQDTKRIFGGILDLFEEGAAE 71
>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 206
Score = 26.8 bits (59), Expect = 2.3
Identities = 5/49 (10%), Positives = 14/49 (28%)
Query: 68 VSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTF 116
V T N+ + + +D + + +++ N
Sbjct: 24 VVTWDDSMVGNAAPIGVLCTGDDTVTLYLYQGTRTVENVLNNGRFTVNV 72
>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 189
Score = 26.3 bits (58), Expect = 2.5
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 68 VSTASKDGRVNSRSL-ILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLW 118
T ++DG N+ + I+ R+ +L+ +
Sbjct: 17 AITENEDGSWNAAPIGIIVEDSSSDTAKAKLYRNRTRANLERSGVLFANVTD 68
>d1yvka1 d.108.1.1 (A:5-156) Hypothetical protein YvbK (BSu33890)
{Bacillus subtilis [TaxId: 1423]}
Length = 152
Score = 26.3 bits (57), Expect = 2.6
Identities = 7/106 (6%), Positives = 20/106 (18%), Gaps = 10/106 (9%)
Query: 131 IRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQH 190
++ + E I Q + ++
Sbjct: 40 AWAGDELAGVYVLLKTRPQTVE--IVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIE 97
Query: 191 DLARPDHVIAYKLFPTFMDFYESHGLKIADRLK-YVRDNENAKDWE 235
+ Y+ G +I + + + +E
Sbjct: 98 IGTGNSSIHQLS-------LYQKCGFRIQAIDHDFFLRHYDEDIFE 136
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 25.6 bits (56), Expect = 3.2
Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 80 RSLILRRLDEDGFVIMT--DGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIR 132
R ++ L+++GF + D S+ ++ + P+ + G+ + ++
Sbjct: 13 REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLK 67
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 63
Score = 24.3 bits (53), Expect = 3.6
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 59 SNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRS 100
+A ++ S + V+ + R++ DG + + R
Sbjct: 26 RARIAERLDQSGPT----VSQ---TVSRMERDGLLRVAGDRH 60
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM
{Vibrio cholerae [TaxId: 666]}
Length = 80
Score = 24.7 bits (54), Expect = 4.2
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 34 IDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRR 86
I P+P QL SW + L + + +++ +G V + L L+R
Sbjct: 32 IQPLPFS--QLV-SWI---AYLQERQGVSVDAIDIDRGKVNGVVEVKRLQLKR 78
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Length = 128
Score = 25.3 bits (55), Expect = 4.9
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 80 RSLILRRLDEDGFVIMT---DGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIR 132
R ++ L E GF + DG + +K + + N+DGL L + IR
Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIR 72
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 25.2 bits (54), Expect = 6.4
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 109 NPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEP 153
PN + +I +L + + G+V ++ + + EA
Sbjct: 107 GPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG 151
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 158
Score = 24.8 bits (54), Expect = 6.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 164 HQGQPVDWDTHKKNHDELLSKFE-KGQHDLARPD 196
H G PV T+ HD F+ KG+HD RP+
Sbjct: 115 HGGFPV---TNFWRHDGRFIFFQSKGEHDHPRPE 145
>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 197
Score = 25.0 bits (54), Expect = 7.2
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 15/55 (27%)
Query: 4 TLRNMAQRYQAGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHSD 58
T ++A +Y QA + + MQ+++ W +L
Sbjct: 6 TASSLANQYHIDSEQARRVLDTT---------------MQMYEQWREQQPKLAHP 45
>d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase),
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 294
Score = 24.8 bits (53), Expect = 9.8
Identities = 12/79 (15%), Positives = 23/79 (29%)
Query: 161 YVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIAD 220
+V + G PV ++ + R + Y S L
Sbjct: 116 FVKYDGNPVISKPPEEGTHAFRDPKVNRSNGEWRMVLGSGKDEKIGRVLLYTSDDLFHWK 175
Query: 221 RLKYVRDNENAKDWECTRI 239
+ ++E K+ EC +
Sbjct: 176 YEGAIFEDETTKEIECPDL 194
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.409
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 926,137
Number of extensions: 42096
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 32
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)