BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14697
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OM2|A Chain A, Solution Nmr Structure Of The Mitochondrial Protein Import
Receptor Tom20 From Rat In A Complex With A Presequence
Peptide Derived From Rat Aldehyde Dehydrogenase (Aldh)
Length = 95
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 57/71 (80%)
Query: 100 IPDLKDHSAVQQYFLQEIQLGETLLAAGDLDNGVEHLANALTVCGQPNQLLGVLQQTLPP 159
+PDLKD AVQ++FL+EIQLGE LLA GD + GV+HL NA+ VCGQP QLL VLQQTLPP
Sbjct: 7 LPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPP 66
Query: 160 NVFNALIEKLP 170
VF L+ KLP
Sbjct: 67 PVFQMLLTKLP 77
>pdb|2V1S|A Chain A, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
pdb|2V1S|B Chain B, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
pdb|2V1S|C Chain C, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
pdb|2V1S|D Chain D, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
pdb|2V1S|E Chain E, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
pdb|2V1S|F Chain F, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
pdb|2V1S|G Chain G, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
pdb|3AWR|A Chain A, Crystal Structure Of Rat Tom20-Aldh Presequence Complex:
The Intermolecular Disulfide Bond Was Cleaved In The
Crystal Of A Disulfide-Tethered Complex.
pdb|3AWR|B Chain B, Crystal Structure Of Rat Tom20-Aldh Presequence Complex:
The Intermolecular Disulfide Bond Was Cleaved In The
Crystal Of A Disulfide-Tethered Complex.
pdb|3AX2|A Chain A, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Disulfide- Tethered Complex With A Non-Optimized, Long
Linker
pdb|3AX2|C Chain C, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Disulfide- Tethered Complex With A Non-Optimized, Long
Linker
pdb|3AX2|E Chain E, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Disulfide- Tethered Complex With A Non-Optimized, Long
Linker
pdb|3AX2|G Chain G, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Disulfide- Tethered Complex With A Non-Optimized, Long
Linker
pdb|3AX5|A Chain A, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Complex (Form1) Between Tom20 And A Disulfide-Bridged
Presequence Peptide Containing D-Cys And L-Cys At The I
And I+3 Positions.
pdb|3AX5|C Chain C, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Complex (Form1) Between Tom20 And A Disulfide-Bridged
Presequence Peptide Containing D-Cys And L-Cys At The I
And I+3 Positions
Length = 73
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 54/68 (79%)
Query: 102 DLKDHSAVQQYFLQEIQLGETLLAAGDLDNGVEHLANALTVCGQPNQLLGVLQQTLPPNV 161
DLKD AVQ++FL+EIQLGE LLA GD + GV+HL NA+ VCGQP QLL VLQQTLPP V
Sbjct: 6 DLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPV 65
Query: 162 FNALIEKL 169
F L+ KL
Sbjct: 66 FQMLLTKL 73
>pdb|2V1T|A Chain A, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
pdb|2V1T|B Chain B, Crystal Structure Of Rat Tom20-Aldh Presequence Complex
Length = 73
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 54/68 (79%)
Query: 102 DLKDHSAVQQYFLQEIQLGETLLAAGDLDNGVEHLANALTVCGQPNQLLGVLQQTLPPNV 161
DLKD AVQ++FL+EIQLGE LLA GD + GV+HL NA+ VCGQP QLL VLQQTLPP V
Sbjct: 6 DLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPV 65
Query: 162 FNALIEKL 169
F L+ KL
Sbjct: 66 FQXLLTKL 73
>pdb|3AX3|A Chain A, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Complex (Form2) Between Tom20 And A Disulfide-Bridged
Presequence Peptide Containing D-Cys And L-Cys At The I
And I+3 Positions.
pdb|3AX3|C Chain C, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Complex (Form2) Between Tom20 And A Disulfide-Bridged
Presequence Peptide Containing D-Cys And L-Cys At The I
And I+3 Positions.
pdb|3AX3|E Chain E, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Complex (Form2) Between Tom20 And A Disulfide-Bridged
Presequence Peptide Containing D-Cys And L-Cys At The I
And I+3 Positions.
pdb|3AX3|G Chain G, Crystal Structure Of Rat Tom20-Aldh Presequence Complex: A
Complex (Form2) Between Tom20 And A Disulfide-Bridged
Presequence Peptide Containing D-Cys And L-Cys At The I
And I+3 Positions
Length = 73
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%)
Query: 102 DLKDHSAVQQYFLQEIQLGETLLAAGDLDNGVEHLANALTVCGQPNQLLGVLQQTLPPNV 161
DLKD AVQ++FL+EIQLGE LLA GD + GV+HL NA+ V GQP QLL VLQQTLPP V
Sbjct: 6 DLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVSGQPQQLLQVLQQTLPPPV 65
Query: 162 FNALIEKL 169
F L+ KL
Sbjct: 66 FQMLLTKL 73
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 113 FLQEIQLGETLLAAGDLDNGVEHLANALTVCGQPNQLLGVLQQTLPPNVFNALIEKLP 170
FL E++ G + A DL+ GV+ NA + G+ + +P +V +++ LP
Sbjct: 45 FLFEVKDGNFYICATDLETGVKATVNAAEISGEA-------RFVVPGDVIQKMVKVLP 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,677,442
Number of Sequences: 62578
Number of extensions: 151488
Number of successful extensions: 276
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 9
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)