RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14697
(175 letters)
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 95
Score = 124 bits (313), Expect = 3e-38
Identities = 49/74 (66%), Positives = 57/74 (77%)
Query: 100 IPDLKDHSAVQQYFLQEIQLGETLLAAGDLDNGVEHLANALTVCGQPNQLLGVLQQTLPP 159
+PDLKD AVQ++FL+EIQLGE LLA GD + GV+HL NA+ VCGQP QLL VLQQTLPP
Sbjct: 7 LPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPP 66
Query: 160 NVFNALIEKLPPAG 173
VF L+ KLP
Sbjct: 67 PVFQMLLTKLPTIS 80
>d1zbxb1 d.339.1.1 (B:485-613) Regulatory protein SIR1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 129
Score = 28.3 bits (63), Expect = 0.31
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 58 AVVVGYCLYFDKKRRSDPLFKEKLKERRRKNRELLQQKNKRGIPDLKDHS 107
V G+ + +++ +P L + R ++ Q N D K +
Sbjct: 11 LVADGFLIDLAEEKPINPKDPRLLTLLKDHQRAMIDQMNLVKWNDFKKYQ 60
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli
[TaxId: 562]}
Length = 133
Score = 27.5 bits (61), Expect = 0.55
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 23 YFGLWSGRIGPSGRLMSPMELISGNKVVTAVAVG 56
+ G + + R+ +P+ + K + VA+G
Sbjct: 89 NVAINRGFLAQALRVFTPIYDENH-KQIGVVAIG 121
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 27.6 bits (60), Expect = 0.98
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 148 QLLGVLQQTLPPNVFNALIEKLPPA 172
+ L N ++ +L
Sbjct: 924 EALNKYNAISGNTFLNTILPQLTQE 948
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 27.0 bits (58), Expect = 1.5
Identities = 2/25 (8%), Positives = 9/25 (36%)
Query: 148 QLLGVLQQTLPPNVFNALIEKLPPA 172
++L + + + ++ P
Sbjct: 853 KILHGFKNQVGDENWRRFSDQFPLP 877
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase
(SAMT) {Clarkia breweri [TaxId: 36903]}
Length = 359
Score = 26.8 bits (59), Expect = 1.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 122 TLLAAGDLDNGVEHLANALTVCGQPNQLLGVLQQTLPPNVFNALIEKLPP 171
L A +L VE L + + + + LP N FNA+ LP
Sbjct: 66 ALFAVTELIKTVEELRKKM--GRENSPEYQIFLNDLPGNDFNAIFRSLPI 113
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Length = 385
Score = 26.6 bits (59), Expect = 1.8
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 132 GVEHLANALTVCGQPNQLLGVLQQTLPPNVFNALIEKLP 170
G H + +T C PN L TLP + N + E L
Sbjct: 148 GGGHAPDIITACAHPNILPSSTNPTLPYTL-NTIDEHLD 185
>d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId:
28095]}
Length = 377
Score = 26.2 bits (56), Expect = 2.4
Identities = 19/101 (18%), Positives = 30/101 (29%)
Query: 39 SPMELISGNKVVTAVAVGAAVVVGYCLYFDKKRRSDPLFKEKLKERRRKNRELLQQKNKR 98
+ L S K + A+AV V G R P F+ +L + +
Sbjct: 55 TLFRLASVTKPIVALAVLRLVARGELALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHT 114
Query: 99 GIPDLKDHSAVQQYFLQEIQLGETLLAAGDLDNGVEHLANA 139
+ + L DLD + LA+A
Sbjct: 115 SGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASA 155
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 25.8 bits (57), Expect = 2.9
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 132 GVEHLANALTVCGQPNQLLGVLQQTLPPNVFNALIEKLP 170
G H + + + G PN L T P V N + E L
Sbjct: 149 GGGHAPDIMAMAGHPNVLPSSTNPTRPFTV-NTIDEHLD 186
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 25.3 bits (55), Expect = 2.9
Identities = 3/41 (7%), Positives = 14/41 (34%)
Query: 68 DKKRRSDPLFKEKLKERRRKNRELLQQKNKRGIPDLKDHSA 108
D++ + ++++ R + + + + L
Sbjct: 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGK 74
>d2mhra_ a.24.4.1 (A:) Myohemerythin {Sipunculan worm (Themiste
zostericola) [TaxId: 6437]}
Length = 118
Score = 24.9 bits (54), Expect = 3.3
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 97 KRGIPDLKDHSAVQQYFLQEIQLGETLLAAGDLDNGVEHLAN 138
++ H + + FL++I + A ++D E L N
Sbjct: 64 AAKYSEVVPHKKMHKDFLEKIGGLSAPVDAKNVDYCKEWLVN 105
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase,
N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 162
Score = 25.2 bits (55), Expect = 3.7
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 88 NRELLQQKNKRGIPDLKDHSAVQQYFLQEI 117
L K I KD A+ +F +
Sbjct: 9 AMLNLYDKAGH-IQFDKDQQAIDAFFATHV 37
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 25.0 bits (53), Expect = 5.0
Identities = 12/67 (17%), Positives = 16/67 (23%), Gaps = 4/67 (5%)
Query: 4 CGSSWVLPSSFCWFGDWCGYFGLWSG----RIGPSGRLMSPMELISGNKVVTAVAVGAAV 59
F + + Y RI P + G TAVA G
Sbjct: 203 IFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE 262
Query: 60 VVGYCLY 66
+Y
Sbjct: 263 GDCTAIY 269
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 24.8 bits (54), Expect = 5.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 73 SDPLFKEKLKERRRKNRELLQQKNKR 98
P K+KE + + + + +K +R
Sbjct: 131 KYPEIARKVKEYKERMKREVLEKAQR 156
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Length = 163
Score = 24.5 bits (53), Expect = 6.5
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 73 SDPLFKEKLKERRRKNRE-LLQQKNKRG 99
D ++L + R+ + +L+ + RG
Sbjct: 134 HDKELHQRLNDWRKAQTDEVLENPDPRG 161
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 117
Score = 24.1 bits (52), Expect = 7.6
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 76 LFKEKLKERRRKNR 89
L E++ RR+ +R
Sbjct: 101 LLGERVARRRQDSR 114
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 24.8 bits (53), Expect = 8.4
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 100 IPDLKDHSAVQQYFLQEIQ 118
+ + K AV++Y ++EIQ
Sbjct: 1334 LLEAKGPEAVERYLVEEIQ 1352
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.442
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 702,401
Number of extensions: 31885
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 17
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)