BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14698
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OII|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1
BOUND TO S- Adenosylhomocysteine
pdb|3OII|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1
BOUND TO S- Adenosylhomocysteine
pdb|3OIJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1
BOUND TO S- Adenosylhomocysteine And 2 Molecules Of
Cognate Rna
pdb|3OIJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1
BOUND TO S- Adenosylhomocysteine And 2 Molecules Of
Cognate Rna
pdb|3OIN|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1
BOUND TO S- Adenosylhomocysteine And 1 Molecule Of
Cognate Rna
pdb|3OIN|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1
BOUND TO S- Adenosylhomocysteine And 1 Molecule Of
Cognate Rna
Length = 253
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 133/189 (70%), Gaps = 4/189 (2%)
Query: 21 NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
+ + LLNCDDH LLKK GR+ RPDI HQCLL L+DSP+N+AG LQVYI T + +LI
Sbjct: 64 DKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILI 123
Query: 81 EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
EVNP RIPRTFKRF+GLMVQLLHK S+R+ +S KLLKVIKNPIT HLP RK+ SF
Sbjct: 124 EVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF 183
Query: 141 SSS--KLTKPADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLC 196
+ ++ + + DE I + +GAMA G+ + +Y + + +SN+PLSA++ C+K C
Sbjct: 184 DAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFC 243
Query: 197 SAFEEAWGV 205
E+AW +
Sbjct: 244 HGAEDAWNI 252
>pdb|2V3K|A Chain A, The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta Knot
Fold Methyltransferase
pdb|2V3J|A Chain A, The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta Knot
Fold Methyltransferase
Length = 258
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/189 (52%), Positives = 131/189 (69%), Gaps = 4/189 (2%)
Query: 21 NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
+ + LLNCDDH LLKK GR+ RPDI HQCLL L+DSP+N+AG LQVYI T + +LI
Sbjct: 63 DKYVLLNCDDHQGLLKKXGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILI 122
Query: 81 EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
EVNP RIPRTFKRF+GL VQLLHK S+R+ +S KLLKVIKNPIT HLP RK+ SF
Sbjct: 123 EVNPTVRIPRTFKRFSGLXVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF 182
Query: 141 SSS--KLTKPADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLC 196
+ ++ + + DE I + +GA A G+ + +Y + + +SN+PLSA++ C+K C
Sbjct: 183 DAPVIRVQDYIEKLDDDESICVFVGAXARGKDNFADEYVDEKVGLSNYPLSASVACSKFC 242
Query: 197 SAFEEAWGV 205
E+AW +
Sbjct: 243 HGAEDAWNI 251
>pdb|3BBE|A Chain A, M. Jannaschii Nep1
pdb|3BBE|B Chain B, M. Jannaschii Nep1
pdb|3BBH|A Chain A, M. Jannaschii Nep1 Complexed With Sinefungin
pdb|3BBH|B Chain B, M. Jannaschii Nep1 Complexed With Sinefungin
Length = 205
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
+++L+ + H ++K + RPDI+H LL ++DSP+N L +YIHT + ++++
Sbjct: 31 YDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKI 90
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHL-PVGVRKIGTSFS 141
NP+TR+PR + RF G+M ++L + N L+K+ + + L + +KI
Sbjct: 91 NPETRLPRNYFRFLGVMEKVL------KGERN-HLIKMEEKTLEDLLNEINAKKIAIMTK 143
Query: 142 SSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTKLC 196
+ KLT P L D +IG +G++ + + ISI N L A C +C
Sbjct: 144 TGKLTHPKLLKEYD---TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIIC 200
Query: 197 SAF 199
+
Sbjct: 201 YSL 203
>pdb|3BBD|A Chain A, M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocysteine
pdb|3BBD|B Chain B, M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocysteine
Length = 205
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
+++L+ + H +K + RPDI+H LL ++DSP+N L +YIHT + ++++
Sbjct: 31 YDILDSNYHYKAXEKLKDKEXRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKI 90
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
NP+TR+PR + RF G+ ++L K L+ + N I +KI +
Sbjct: 91 NPETRLPRNYFRFLGVXEKVLKGERNHLIKXEEKTLEDLLNEI------NAKKIAIXTKT 144
Query: 143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTKLCS 197
KLT P L D +IG +G++ + + ISI N L A C +C
Sbjct: 145 GKLTHPKLLKEYD---TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLXAWTVCGIICY 201
Query: 198 AF 199
+
Sbjct: 202 SL 203
>pdb|3O7B|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bound To
S- Adenosylhomocysteine
Length = 244
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
RPDIVHQCLL+L+DSPL +VY+HT +I VN +TR+PR + RF GLM +L +
Sbjct: 86 RPDIVHQCLLLLLDSPLRD---FEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEE 142
Query: 106 FSVRASDSNIKLLKVI--KNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIG 163
+ A D+ + K + ++ + + R+ G F S+L D + + IG
Sbjct: 143 RRITAGDTTLIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELL--------DGDVAVCIG 194
Query: 164 AMAHG 168
A HG
Sbjct: 195 AFPHG 199
>pdb|3SOZ|A Chain A, Cytoplasmic Protein Stm1381 From Salmonella Typhimurium
Lt2
pdb|3SOZ|B Chain B, Cytoplasmic Protein Stm1381 From Salmonella Typhimurium
Lt2
pdb|3SOZ|C Chain C, Cytoplasmic Protein Stm1381 From Salmonella Typhimurium
Lt2
Length = 248
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 139 SFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSA-ALTC 192
SF+SSK + AD + + + G +D DY +I + FP +A AL C
Sbjct: 25 SFTSSKYEEGADYL---------LSCLRQGNIDVDYXPAHIVQTRFPQTAEALAC 70
>pdb|3GQQ|A Chain A, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|B Chain B, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|C Chain C, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|D Chain D, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|E Chain E, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|F Chain F, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
Length = 195
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 105 KFSVRASDSNIKLLKVIKNPITQHLPVGVRKI 136
+F +R DS L ++ K P+++ LP+ R +
Sbjct: 45 RFKIRDXDSGTVLFEIKKPPVSERLPINRRDL 76
>pdb|1K96|A Chain A, Crystal Structure Of Calcium Bound Human S100a6
pdb|1K9K|A Chain A, Crystal Structure Of Calcium Bound Human S100a6
pdb|1K9K|B Chain B, Crystal Structure Of Calcium Bound Human S100a6
pdb|1K9P|A Chain A, Crystal Structure Of Calcium Free (or Apo) Human S100a6
Length = 90
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 97 GLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVR 134
GL+V + HK+S R D + K +K I + L +G +
Sbjct: 10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSK 47
>pdb|3RBQ|A Chain A, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|B Chain B, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|C Chain C, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|D Chain D, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|E Chain E, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|F Chain F, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
Length = 195
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 105 KFSVRASDSNIKLLKVIKNPITQHLPVGVRKI 136
+F +R DS L ++ K P+++ LP+ R +
Sbjct: 45 RFKIRDMDSGTVLFEIKKPPVSERLPINRRDL 76
>pdb|1K8U|A Chain A, Crystal Structure Of Calcium-Free (Or Apo) Human S100a6;
Cys3met Mutant (Selenomethionine Derivative)
Length = 90
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 97 GLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVR 134
GL+V + HK+S R D + K +K I + L +G +
Sbjct: 10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSK 47
>pdb|4GOJ|C Chain C, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|D Chain D, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOK|G Chain G, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|C Chain C, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 240
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 105 KFSVRASDSNIKLLKVIKNPITQHLPVGVRKI 136
+F +R DS L ++ K P+++ LP+ R +
Sbjct: 90 RFKIRDMDSGTVLFEIKKPPVSERLPINRRDL 121
>pdb|3EDN|A Chain A, Crystal Structure Of The Bacillus Anthracis Phenazine
Biosynthesis Protein, Phzf Family
pdb|3EDN|B Chain B, Crystal Structure Of The Bacillus Anthracis Phenazine
Biosynthesis Protein, Phzf Family
Length = 299
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 64 RAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKL 117
+AG+L + I +N + + P+ FK FAG +L H + +D ++ L
Sbjct: 101 KAGILPIQIGVNENGETFIKXRQTAPQ-FKDFAGSKEELAHSIGLEVNDLDVSL 153
>pdb|1K0O|A Chain A, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0O|B Chain B, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0N|A Chain A, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0N|B Chain B, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0M|A Chain A, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
pdb|1K0M|B Chain B, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
Length = 241
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 72 IHTEKNVLIEVNPQTRIPRTFKRFAGLM-------VQLLHKFSVRASDSN---------- 114
+HT+ N + E P + + A L + + KFS +SN
Sbjct: 73 VHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKG 132
Query: 115 -IKLLKVIKNPITQHLPVGV 133
+K LKV+ N +T LP GV
Sbjct: 133 LLKALKVLDNYLTSPLPEGV 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,051,942
Number of Sequences: 62578
Number of extensions: 234576
Number of successful extensions: 393
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 15
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)